Multiple sequence alignment - TraesCS5B01G280400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G280400 chr5B 100.000 5716 0 0 1 5716 466030456 466024741 0.000000e+00 10556.0
1 TraesCS5B01G280400 chr5B 81.849 1190 186 21 2979 4148 466173354 466172175 0.000000e+00 974.0
2 TraesCS5B01G280400 chr5B 81.478 1177 190 18 2979 4133 466222258 466221088 0.000000e+00 941.0
3 TraesCS5B01G280400 chr5B 80.412 679 108 15 3487 4148 466004346 466003676 1.430000e-135 494.0
4 TraesCS5B01G280400 chr5B 73.635 971 214 33 3199 4148 466006667 466005718 2.550000e-88 337.0
5 TraesCS5B01G280400 chr5B 84.848 297 34 8 878 1166 564531794 564531501 7.250000e-74 289.0
6 TraesCS5B01G280400 chr5B 86.486 259 28 4 3196 3451 466004605 466004351 1.570000e-70 278.0
7 TraesCS5B01G280400 chr5B 85.053 281 29 6 887 1166 564180960 564180692 2.030000e-69 274.0
8 TraesCS5B01G280400 chr5B 83.972 287 37 6 887 1166 564473070 564472786 3.400000e-67 267.0
9 TraesCS5B01G280400 chr5B 82.759 290 37 8 878 1166 564213740 564213463 4.420000e-61 246.0
10 TraesCS5B01G280400 chr5B 81.443 291 41 6 878 1167 564028973 564028695 5.760000e-55 226.0
11 TraesCS5B01G280400 chr5B 83.217 143 16 3 1024 1166 564318399 564318265 2.160000e-24 124.0
12 TraesCS5B01G280400 chr5B 97.436 39 1 0 5404 5442 466025023 466024985 3.700000e-07 67.6
13 TraesCS5B01G280400 chr5B 97.436 39 1 0 5434 5472 466025053 466025015 3.700000e-07 67.6
14 TraesCS5B01G280400 chr5B 92.857 42 2 1 1260 1301 564472691 564472651 6.180000e-05 60.2
15 TraesCS5B01G280400 chr5B 92.857 42 2 1 1260 1301 564531406 564531366 6.180000e-05 60.2
16 TraesCS5B01G280400 chr5B 96.970 33 1 0 1269 1301 564028518 564028486 8.000000e-04 56.5
17 TraesCS5B01G280400 chr5D 94.123 3216 111 22 2227 5398 387694516 387691335 0.000000e+00 4820.0
18 TraesCS5B01G280400 chr5D 92.659 1226 65 11 1 1218 387696705 387695497 0.000000e+00 1742.0
19 TraesCS5B01G280400 chr5D 93.501 954 37 8 1275 2227 387695492 387694563 0.000000e+00 1395.0
20 TraesCS5B01G280400 chr5D 81.918 1189 185 19 2979 4148 387706733 387705556 0.000000e+00 977.0
21 TraesCS5B01G280400 chr5D 81.263 950 161 10 2988 3922 387713355 387712408 0.000000e+00 752.0
22 TraesCS5B01G280400 chr5D 84.381 525 71 8 3199 3716 387661696 387661176 6.610000e-139 505.0
23 TraesCS5B01G280400 chr5D 82.440 541 61 15 2414 2921 387694923 387694384 5.260000e-120 442.0
24 TraesCS5B01G280400 chr5D 86.301 365 43 5 1868 2231 387694322 387693964 1.930000e-104 390.0
25 TraesCS5B01G280400 chr5D 94.400 125 7 0 2257 2381 387693906 387693782 5.840000e-45 193.0
26 TraesCS5B01G280400 chr5D 98.039 51 1 0 1203 1253 387695543 387695493 7.890000e-14 89.8
27 TraesCS5B01G280400 chr5D 96.970 33 1 0 1269 1301 459753624 459753592 8.000000e-04 56.5
28 TraesCS5B01G280400 chr5D 96.970 33 1 0 1269 1301 459761661 459761629 8.000000e-04 56.5
29 TraesCS5B01G280400 chr5A 93.988 3210 121 20 2227 5398 490420594 490417419 0.000000e+00 4793.0
30 TraesCS5B01G280400 chr5A 93.213 1223 61 13 1 1218 490422788 490421583 0.000000e+00 1779.0
31 TraesCS5B01G280400 chr5A 93.501 954 56 5 1275 2227 490421578 490420630 0.000000e+00 1413.0
32 TraesCS5B01G280400 chr5A 82.086 1189 182 21 2981 4148 490594826 490593648 0.000000e+00 987.0
33 TraesCS5B01G280400 chr5A 81.239 1178 196 16 2979 4139 490652557 490651388 0.000000e+00 928.0
34 TraesCS5B01G280400 chr5A 82.209 978 138 20 3199 4148 490321264 490320295 0.000000e+00 809.0
35 TraesCS5B01G280400 chr5A 93.392 227 15 0 269 495 490339963 490339737 2.550000e-88 337.0
36 TraesCS5B01G280400 chr5A 83.288 371 47 9 1867 2231 490420408 490420047 1.540000e-85 327.0
37 TraesCS5B01G280400 chr5A 83.103 290 39 4 878 1167 579846998 579847277 7.350000e-64 255.0
38 TraesCS5B01G280400 chr5A 87.705 122 6 3 899 1018 490340080 490339966 3.590000e-27 134.0
39 TraesCS5B01G280400 chr5A 89.286 56 4 1 4157 4210 618604468 618604523 1.030000e-07 69.4
40 TraesCS5B01G280400 chr5A 92.308 39 3 0 1263 1301 579847445 579847483 8.000000e-04 56.5
41 TraesCS5B01G280400 chrUn 96.970 33 1 0 1269 1301 459190431 459190399 8.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G280400 chr5B 466024741 466030456 5715 True 10556.000000 10556 100.000000 1 5716 1 chr5B.!!$R1 5715
1 TraesCS5B01G280400 chr5B 466172175 466173354 1179 True 974.000000 974 81.849000 2979 4148 1 chr5B.!!$R2 1169
2 TraesCS5B01G280400 chr5B 466221088 466222258 1170 True 941.000000 941 81.478000 2979 4133 1 chr5B.!!$R3 1154
3 TraesCS5B01G280400 chr5B 466003676 466006667 2991 True 369.666667 494 80.177667 3196 4148 3 chr5B.!!$R7 952
4 TraesCS5B01G280400 chr5D 387691335 387696705 5370 True 1295.971429 4820 91.637571 1 5398 7 chr5D.!!$R6 5397
5 TraesCS5B01G280400 chr5D 387705556 387706733 1177 True 977.000000 977 81.918000 2979 4148 1 chr5D.!!$R2 1169
6 TraesCS5B01G280400 chr5D 387712408 387713355 947 True 752.000000 752 81.263000 2988 3922 1 chr5D.!!$R3 934
7 TraesCS5B01G280400 chr5D 387661176 387661696 520 True 505.000000 505 84.381000 3199 3716 1 chr5D.!!$R1 517
8 TraesCS5B01G280400 chr5A 490417419 490422788 5369 True 2078.000000 4793 90.997500 1 5398 4 chr5A.!!$R5 5397
9 TraesCS5B01G280400 chr5A 490593648 490594826 1178 True 987.000000 987 82.086000 2981 4148 1 chr5A.!!$R2 1167
10 TraesCS5B01G280400 chr5A 490651388 490652557 1169 True 928.000000 928 81.239000 2979 4139 1 chr5A.!!$R3 1160
11 TraesCS5B01G280400 chr5A 490320295 490321264 969 True 809.000000 809 82.209000 3199 4148 1 chr5A.!!$R1 949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 467 0.731855 GTTCCAGCCACGACGACTAC 60.732 60.000 0.0 0.0 0.00 2.73 F
1194 1205 0.037160 TAGCCTCCGTTTTCCAACCC 59.963 55.000 0.0 0.0 0.00 4.11 F
1391 1402 0.109342 CATGGCTCTGATGTACCCCC 59.891 60.000 0.0 0.0 0.00 5.40 F
2213 2225 1.197036 GCTTGCTGAACCGGTAGAAAC 59.803 52.381 8.0 0.0 0.00 2.78 F
3164 3271 1.140312 GGAGATGCCATCCCAACCTA 58.860 55.000 0.0 0.0 36.34 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1408 1419 0.038166 TGTTGGCAGGGTGATCCTTC 59.962 55.000 0.00 0.00 45.47 3.46 R
2254 2313 0.677731 GGCTGCCATGTCACTTAGCA 60.678 55.000 15.17 0.00 33.05 3.49 R
2265 2324 1.033746 CGAAATGACCAGGCTGCCAT 61.034 55.000 22.65 11.58 0.00 4.40 R
3354 3465 1.812571 CCCAGGAATATGCGGCATAAC 59.187 52.381 24.94 20.10 29.74 1.89 R
4813 4966 0.038526 ACGAAACAGAGTACGGCCTG 60.039 55.000 0.00 10.14 36.53 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.241506 TGTTGATCAAACCATCAGGAACTTC 59.758 40.000 10.35 0.00 38.06 3.01
51 52 1.478510 TCAGGAACTTCCATCGCTCTC 59.521 52.381 10.57 0.00 39.61 3.20
114 115 8.319057 TCTTAGAAAAGCCATCATACTCCTTA 57.681 34.615 0.00 0.00 32.36 2.69
125 126 4.021229 TCATACTCCTTAAGAAGCACCGA 58.979 43.478 3.36 0.00 0.00 4.69
176 177 4.556697 TCCATTACTCTCTGCTAATCCCA 58.443 43.478 0.00 0.00 0.00 4.37
260 261 3.206150 GCTTCCACACGATATTCATGGT 58.794 45.455 0.00 0.00 0.00 3.55
264 265 2.158827 CCACACGATATTCATGGTGGGA 60.159 50.000 3.89 0.00 44.60 4.37
328 329 2.420547 GCAATCACAGTCCATCTAGCCA 60.421 50.000 0.00 0.00 0.00 4.75
353 354 7.004086 ACCACCTTCAAATCTTCAAATACTCA 58.996 34.615 0.00 0.00 0.00 3.41
415 416 2.697751 ACCTTCCGAGAAGATCATCCAG 59.302 50.000 13.28 0.00 0.00 3.86
466 467 0.731855 GTTCCAGCCACGACGACTAC 60.732 60.000 0.00 0.00 0.00 2.73
471 472 1.183676 AGCCACGACGACTACCCTTT 61.184 55.000 0.00 0.00 0.00 3.11
478 479 2.158959 CGACTACCCTTTGCTCGCG 61.159 63.158 0.00 0.00 0.00 5.87
541 545 1.001764 CATCACAAGAGGGCCTGCA 60.002 57.895 12.95 0.00 0.00 4.41
616 621 2.439701 CTCGCCGAGGGGTCACTA 60.440 66.667 6.13 0.00 34.97 2.74
663 668 4.965119 AGTTTCTCAAAGGTGTTCACAC 57.035 40.909 1.10 1.10 45.72 3.82
873 884 5.852282 AAAGAGTAACTTGTTGCCATTGT 57.148 34.783 0.00 0.00 38.98 2.71
874 885 6.952773 AAAGAGTAACTTGTTGCCATTGTA 57.047 33.333 0.00 0.00 38.98 2.41
875 886 5.941948 AGAGTAACTTGTTGCCATTGTAC 57.058 39.130 0.00 0.00 0.00 2.90
876 887 4.760204 AGAGTAACTTGTTGCCATTGTACC 59.240 41.667 0.00 0.00 0.00 3.34
929 940 1.770658 CCATCTATCTGTCTGGCCCAA 59.229 52.381 0.00 0.00 0.00 4.12
1183 1194 1.006805 CTCCGCATCTTAGCCTCCG 60.007 63.158 0.00 0.00 0.00 4.63
1186 1197 0.462047 CCGCATCTTAGCCTCCGTTT 60.462 55.000 0.00 0.00 0.00 3.60
1187 1198 1.369625 CGCATCTTAGCCTCCGTTTT 58.630 50.000 0.00 0.00 0.00 2.43
1188 1199 1.327764 CGCATCTTAGCCTCCGTTTTC 59.672 52.381 0.00 0.00 0.00 2.29
1191 1202 3.343617 CATCTTAGCCTCCGTTTTCCAA 58.656 45.455 0.00 0.00 0.00 3.53
1192 1203 2.774687 TCTTAGCCTCCGTTTTCCAAC 58.225 47.619 0.00 0.00 0.00 3.77
1193 1204 1.810755 CTTAGCCTCCGTTTTCCAACC 59.189 52.381 0.00 0.00 0.00 3.77
1194 1205 0.037160 TAGCCTCCGTTTTCCAACCC 59.963 55.000 0.00 0.00 0.00 4.11
1196 1207 1.524008 GCCTCCGTTTTCCAACCCTG 61.524 60.000 0.00 0.00 0.00 4.45
1198 1209 1.687563 CTCCGTTTTCCAACCCTGTT 58.312 50.000 0.00 0.00 0.00 3.16
1199 1210 2.028876 CTCCGTTTTCCAACCCTGTTT 58.971 47.619 0.00 0.00 0.00 2.83
1200 1211 3.215975 CTCCGTTTTCCAACCCTGTTTA 58.784 45.455 0.00 0.00 0.00 2.01
1201 1212 3.215975 TCCGTTTTCCAACCCTGTTTAG 58.784 45.455 0.00 0.00 0.00 1.85
1202 1213 3.117963 TCCGTTTTCCAACCCTGTTTAGA 60.118 43.478 0.00 0.00 0.00 2.10
1203 1214 3.824443 CCGTTTTCCAACCCTGTTTAGAT 59.176 43.478 0.00 0.00 0.00 1.98
1204 1215 4.082949 CCGTTTTCCAACCCTGTTTAGATC 60.083 45.833 0.00 0.00 0.00 2.75
1206 1217 5.240844 CGTTTTCCAACCCTGTTTAGATCTT 59.759 40.000 0.00 0.00 0.00 2.40
1207 1218 6.428771 CGTTTTCCAACCCTGTTTAGATCTTA 59.571 38.462 0.00 0.00 0.00 2.10
1209 1220 5.099042 TCCAACCCTGTTTAGATCTTAGC 57.901 43.478 0.00 0.00 0.00 3.09
1212 1223 5.119694 CAACCCTGTTTAGATCTTAGCCTC 58.880 45.833 0.00 0.00 0.00 4.70
1254 1265 4.343814 AGATCTTAGCCTCAGTTTAGGAGC 59.656 45.833 0.00 0.00 39.15 4.70
1255 1266 3.441101 TCTTAGCCTCAGTTTAGGAGCA 58.559 45.455 0.00 0.00 39.15 4.26
1256 1267 4.033709 TCTTAGCCTCAGTTTAGGAGCAT 58.966 43.478 0.00 0.00 39.15 3.79
1257 1268 2.706339 AGCCTCAGTTTAGGAGCATG 57.294 50.000 0.00 0.00 39.15 4.06
1258 1269 1.912043 AGCCTCAGTTTAGGAGCATGT 59.088 47.619 0.00 0.00 39.15 3.21
1260 1271 3.133721 AGCCTCAGTTTAGGAGCATGTAG 59.866 47.826 0.00 0.00 39.15 2.74
1278 1289 6.203530 GCATGTAGCAAGCTGATTAACTCATA 59.796 38.462 4.53 0.00 44.79 2.15
1287 1298 8.584157 CAAGCTGATTAACTCATAGATAGGTCT 58.416 37.037 0.00 0.00 38.52 3.85
1376 1387 7.065085 CCACTGTTTTCTGTACTCTTATCATGG 59.935 40.741 0.00 0.00 0.00 3.66
1391 1402 0.109342 CATGGCTCTGATGTACCCCC 59.891 60.000 0.00 0.00 0.00 5.40
1408 1419 1.542915 CCCCAGATGTCTGCAAACAAG 59.457 52.381 0.00 0.00 42.47 3.16
1410 1421 2.886523 CCCAGATGTCTGCAAACAAGAA 59.113 45.455 0.00 0.00 42.47 2.52
1413 1424 3.817084 CAGATGTCTGCAAACAAGAAGGA 59.183 43.478 0.00 0.00 37.15 3.36
1418 1429 3.057946 GTCTGCAAACAAGAAGGATCACC 60.058 47.826 0.00 0.00 0.00 4.02
1527 1538 8.799367 ACCATAATAAACCTTATAATTTCGCCC 58.201 33.333 0.00 0.00 0.00 6.13
1655 1666 8.589701 TTAGTAGTGTGATGATTTCTCTGGTA 57.410 34.615 0.00 0.00 0.00 3.25
1782 1793 8.312564 GGTATACACAGAAACTAAAGGAACTCT 58.687 37.037 5.01 0.00 38.49 3.24
1802 1813 9.313118 GAACTCTTATCTTCTTCCTCTGATTTC 57.687 37.037 0.00 0.00 0.00 2.17
1973 1985 8.398665 GCTCGGAAAATGATTAATTAGACAACT 58.601 33.333 0.00 0.00 0.00 3.16
2168 2180 5.768662 ACCATGATGAGTCCATTGAATGATC 59.231 40.000 6.76 2.04 31.11 2.92
2178 2190 7.769220 AGTCCATTGAATGATCACTTCAAATC 58.231 34.615 24.30 17.72 43.61 2.17
2184 2196 3.694043 TGATCACTTCAAATCCACCGA 57.306 42.857 0.00 0.00 0.00 4.69
2213 2225 1.197036 GCTTGCTGAACCGGTAGAAAC 59.803 52.381 8.00 0.00 0.00 2.78
2254 2313 1.618343 CCCGAATGGCTCCTTGTTTTT 59.382 47.619 0.00 0.00 0.00 1.94
2265 2324 4.202010 GCTCCTTGTTTTTGCTAAGTGACA 60.202 41.667 0.00 0.00 0.00 3.58
2279 2338 2.352422 GACATGGCAGCCTGGTCA 59.648 61.111 23.44 1.30 31.26 4.02
2483 2549 4.743493 AGTGCAATGTTTCGAACAAAAGT 58.257 34.783 0.00 0.00 45.86 2.66
2516 2582 6.430007 AGGGCTCTGAAAATGATTTAGACAT 58.570 36.000 0.00 0.00 0.00 3.06
2518 2584 7.398332 AGGGCTCTGAAAATGATTTAGACATTT 59.602 33.333 0.00 0.00 45.75 2.32
2519 2585 7.704047 GGGCTCTGAAAATGATTTAGACATTTC 59.296 37.037 0.00 0.00 43.94 2.17
2550 2636 4.713553 TGAAGTTCACAATGTCTGGCTTA 58.286 39.130 0.08 0.00 0.00 3.09
2658 2749 4.460948 AGACTGCCCAAATTGCTTAATG 57.539 40.909 0.00 0.00 0.00 1.90
2710 2801 4.641396 TGATGACTTCAAATTCACCGTCT 58.359 39.130 0.00 0.00 0.00 4.18
2764 2855 4.769859 TGCGGTTTTCCTAATTTGTACC 57.230 40.909 0.00 0.00 37.95 3.34
2803 2894 2.131972 GCACGTATGGCATGTTCGATA 58.868 47.619 21.30 0.00 0.00 2.92
2831 2922 4.714632 TGACTCCTTGTTTTCCTAACTGG 58.285 43.478 0.00 0.00 37.10 4.00
2936 3041 2.837498 TGGACTATGTGGATGAATGCG 58.163 47.619 0.00 0.00 0.00 4.73
3164 3271 1.140312 GGAGATGCCATCCCAACCTA 58.860 55.000 0.00 0.00 36.34 3.08
3172 3279 4.532834 TGCCATCCCAACCTAATCTTAAC 58.467 43.478 0.00 0.00 0.00 2.01
3182 3289 6.349363 CCAACCTAATCTTAACTCACAAAGCC 60.349 42.308 0.00 0.00 0.00 4.35
3354 3465 3.461946 GAGTTGAAGAACTCGCCATTG 57.538 47.619 0.00 0.00 46.64 2.82
3712 3847 3.149981 CTCCAAACCTCTCCACCTTTTC 58.850 50.000 0.00 0.00 0.00 2.29
3923 4073 9.562583 GAGTATAGACTAGCTGTTTGCATATAC 57.437 37.037 0.00 0.92 39.29 1.47
3965 4115 9.254133 CTTGTCATATAACTAATCTGAGGTGTG 57.746 37.037 0.00 0.00 0.00 3.82
4046 4197 8.506168 ACTTGCATATTTCTCTAATCGGAAAA 57.494 30.769 0.00 0.00 35.50 2.29
4047 4198 8.398665 ACTTGCATATTTCTCTAATCGGAAAAC 58.601 33.333 0.00 0.00 35.50 2.43
4255 4408 4.935205 GTGTGTATTGTGGAACTGCTGATA 59.065 41.667 0.00 0.00 38.04 2.15
4277 4430 2.354510 CGAGCATTTTCGGCTTTCCATA 59.645 45.455 0.00 0.00 42.78 2.74
4311 4464 4.132336 GCCTGACATGAAGCATGATTCTA 58.868 43.478 23.12 11.05 43.81 2.10
4400 4553 3.774528 ATCGGCTTCTGCTCGGCA 61.775 61.111 0.00 0.00 39.59 5.69
4447 4600 4.201812 CCACATTATTGAGAACGCGACATT 60.202 41.667 15.93 0.00 0.00 2.71
4451 4604 1.225855 TTGAGAACGCGACATTGCTT 58.774 45.000 15.93 0.00 0.00 3.91
4555 4708 0.905357 GTGAGTGGTAGCCTCATGGT 59.095 55.000 13.74 0.00 40.79 3.55
4609 4762 1.380403 CGTGGCATCGAGGAGTCTCT 61.380 60.000 0.00 0.00 37.86 3.10
4621 4774 2.507324 GTCTCTCAGGGCGCGTTC 60.507 66.667 8.43 0.00 0.00 3.95
4671 4824 1.619654 TCCCTTCGGAGTCGTGTTTA 58.380 50.000 0.00 0.00 37.69 2.01
4680 4833 3.426191 CGGAGTCGTGTTTAAAATCGTCA 59.574 43.478 11.24 0.00 0.00 4.35
4681 4834 4.090930 CGGAGTCGTGTTTAAAATCGTCAT 59.909 41.667 11.24 2.29 0.00 3.06
4788 4941 6.194967 TCCAAACTATCACTATCAGGTCTGA 58.805 40.000 2.93 2.93 44.59 3.27
4807 4960 2.616376 TGAAAACGATGGTTGTGTGAGG 59.384 45.455 0.00 0.00 36.25 3.86
4813 4966 5.981716 AACGATGGTTGTGTGAGGTTTCAC 61.982 45.833 0.00 0.87 43.39 3.18
4851 5004 4.529897 TCGTAAACTATCAGAGGTGCCTA 58.470 43.478 0.00 0.00 0.00 3.93
4860 5013 7.048512 ACTATCAGAGGTGCCTAATGTTTAAC 58.951 38.462 0.00 0.00 0.00 2.01
4933 5087 3.182372 GGAAATGACTTTGCTGCGTTTTC 59.818 43.478 0.00 0.00 30.65 2.29
4935 5089 0.383949 TGACTTTGCTGCGTTTTCCC 59.616 50.000 0.00 0.00 0.00 3.97
4972 5126 2.866085 ATCAGAAGCCAGCGTGCTCC 62.866 60.000 3.43 0.00 41.80 4.70
5007 5161 7.870826 TGTTTTCCAGATTGTTATGTGTACTG 58.129 34.615 0.00 0.00 0.00 2.74
5008 5162 7.500892 TGTTTTCCAGATTGTTATGTGTACTGT 59.499 33.333 0.00 0.00 0.00 3.55
5009 5163 8.995220 GTTTTCCAGATTGTTATGTGTACTGTA 58.005 33.333 0.00 0.00 0.00 2.74
5010 5164 8.542497 TTTCCAGATTGTTATGTGTACTGTAC 57.458 34.615 10.98 10.98 0.00 2.90
5011 5165 7.476540 TCCAGATTGTTATGTGTACTGTACT 57.523 36.000 17.98 1.87 0.00 2.73
5033 5187 5.009210 ACTTTTGTACTTTAAGAATGCGGCA 59.991 36.000 4.58 4.58 0.00 5.69
5051 5205 3.424962 CGGCAAACTCTTTAGCTGCTTAC 60.425 47.826 7.79 0.00 35.92 2.34
5059 5213 4.352039 TCTTTAGCTGCTTACGAATCTCG 58.648 43.478 7.79 0.00 46.93 4.04
5075 5229 4.771590 ATCTCGTTGATTTTGTGCATGT 57.228 36.364 0.00 0.00 29.59 3.21
5264 5420 7.118245 GGTTGAATGTCAAAAATTCCAAGGATC 59.882 37.037 0.00 0.00 38.22 3.36
5299 5468 2.403987 CGGGAGCTCGTCGTAGTG 59.596 66.667 16.67 0.00 0.00 2.74
5300 5469 2.396955 CGGGAGCTCGTCGTAGTGT 61.397 63.158 16.67 0.00 0.00 3.55
5301 5470 1.428620 GGGAGCTCGTCGTAGTGTC 59.571 63.158 7.83 0.00 0.00 3.67
5302 5471 1.060622 GGAGCTCGTCGTAGTGTCG 59.939 63.158 7.83 0.00 0.00 4.35
5303 5472 1.580639 GAGCTCGTCGTAGTGTCGC 60.581 63.158 0.00 0.00 0.00 5.19
5304 5473 2.175078 GCTCGTCGTAGTGTCGCA 59.825 61.111 0.00 0.00 0.00 5.10
5305 5474 1.226323 GCTCGTCGTAGTGTCGCAT 60.226 57.895 0.00 0.00 0.00 4.73
5306 5475 0.797249 GCTCGTCGTAGTGTCGCATT 60.797 55.000 0.00 0.00 0.00 3.56
5307 5476 0.907837 CTCGTCGTAGTGTCGCATTG 59.092 55.000 0.00 0.00 0.00 2.82
5308 5477 0.518195 TCGTCGTAGTGTCGCATTGA 59.482 50.000 0.00 0.00 0.00 2.57
5309 5478 1.069091 TCGTCGTAGTGTCGCATTGAA 60.069 47.619 0.00 0.00 0.00 2.69
5310 5479 1.317611 CGTCGTAGTGTCGCATTGAAG 59.682 52.381 0.00 0.00 0.00 3.02
5311 5480 2.325761 GTCGTAGTGTCGCATTGAAGT 58.674 47.619 0.00 0.00 0.00 3.01
5312 5481 2.341760 GTCGTAGTGTCGCATTGAAGTC 59.658 50.000 0.00 0.00 0.00 3.01
5313 5482 2.030628 TCGTAGTGTCGCATTGAAGTCA 60.031 45.455 0.00 0.00 0.00 3.41
5314 5483 2.923655 CGTAGTGTCGCATTGAAGTCAT 59.076 45.455 0.00 0.00 0.00 3.06
5315 5484 3.241773 CGTAGTGTCGCATTGAAGTCATG 60.242 47.826 0.00 0.00 0.00 3.07
5316 5485 3.044235 AGTGTCGCATTGAAGTCATGA 57.956 42.857 0.00 0.00 0.00 3.07
5317 5486 3.603532 AGTGTCGCATTGAAGTCATGAT 58.396 40.909 0.00 0.00 0.00 2.45
5318 5487 4.005650 AGTGTCGCATTGAAGTCATGATT 58.994 39.130 0.00 0.00 0.00 2.57
5319 5488 4.456911 AGTGTCGCATTGAAGTCATGATTT 59.543 37.500 2.67 2.67 0.00 2.17
5320 5489 5.048504 AGTGTCGCATTGAAGTCATGATTTT 60.049 36.000 4.81 0.04 0.00 1.82
5384 5553 1.296867 CGGCATGTTCGACGAATGC 60.297 57.895 22.09 22.09 41.00 3.56
5398 5567 2.924926 ACGAATGCGCGTTTCAATACTA 59.075 40.909 17.37 0.00 42.71 1.82
5399 5568 3.241868 ACGAATGCGCGTTTCAATACTAC 60.242 43.478 17.37 0.00 42.71 2.73
5400 5569 3.000078 CGAATGCGCGTTTCAATACTACT 60.000 43.478 17.37 0.00 0.00 2.57
5401 5570 4.491924 CGAATGCGCGTTTCAATACTACTT 60.492 41.667 17.37 0.00 0.00 2.24
5402 5571 4.939509 ATGCGCGTTTCAATACTACTTT 57.060 36.364 8.43 0.00 0.00 2.66
5403 5572 4.735662 TGCGCGTTTCAATACTACTTTT 57.264 36.364 8.43 0.00 0.00 2.27
5404 5573 4.704457 TGCGCGTTTCAATACTACTTTTC 58.296 39.130 8.43 0.00 0.00 2.29
5405 5574 4.086574 GCGCGTTTCAATACTACTTTTCC 58.913 43.478 8.43 0.00 0.00 3.13
5406 5575 4.644954 CGCGTTTCAATACTACTTTTCCC 58.355 43.478 0.00 0.00 0.00 3.97
5407 5576 4.152759 CGCGTTTCAATACTACTTTTCCCA 59.847 41.667 0.00 0.00 0.00 4.37
5408 5577 5.334260 CGCGTTTCAATACTACTTTTCCCAA 60.334 40.000 0.00 0.00 0.00 4.12
5409 5578 5.854866 GCGTTTCAATACTACTTTTCCCAAC 59.145 40.000 0.00 0.00 0.00 3.77
5410 5579 6.376177 CGTTTCAATACTACTTTTCCCAACC 58.624 40.000 0.00 0.00 0.00 3.77
5411 5580 6.206048 CGTTTCAATACTACTTTTCCCAACCT 59.794 38.462 0.00 0.00 0.00 3.50
5412 5581 7.572539 CGTTTCAATACTACTTTTCCCAACCTC 60.573 40.741 0.00 0.00 0.00 3.85
5413 5582 5.812286 TCAATACTACTTTTCCCAACCTCC 58.188 41.667 0.00 0.00 0.00 4.30
5414 5583 4.857130 ATACTACTTTTCCCAACCTCCC 57.143 45.455 0.00 0.00 0.00 4.30
5415 5584 1.709115 ACTACTTTTCCCAACCTCCCC 59.291 52.381 0.00 0.00 0.00 4.81
5416 5585 1.993301 CTACTTTTCCCAACCTCCCCT 59.007 52.381 0.00 0.00 0.00 4.79
5417 5586 0.482887 ACTTTTCCCAACCTCCCCTG 59.517 55.000 0.00 0.00 0.00 4.45
5418 5587 0.251787 CTTTTCCCAACCTCCCCTGG 60.252 60.000 0.00 0.00 0.00 4.45
5419 5588 2.380571 TTTTCCCAACCTCCCCTGGC 62.381 60.000 0.00 0.00 0.00 4.85
5438 5607 4.096003 GCACGCTAGGGCTCCCAA 62.096 66.667 6.73 0.00 45.11 4.12
5439 5608 2.125106 CACGCTAGGGCTCCCAAC 60.125 66.667 6.73 0.00 38.92 3.77
5440 5609 3.400054 ACGCTAGGGCTCCCAACC 61.400 66.667 6.73 0.00 38.92 3.77
5441 5610 3.083997 CGCTAGGGCTCCCAACCT 61.084 66.667 7.82 0.00 40.89 3.50
5442 5611 2.911928 GCTAGGGCTCCCAACCTC 59.088 66.667 7.82 0.00 38.30 3.85
5443 5612 2.747443 GCTAGGGCTCCCAACCTCC 61.747 68.421 7.82 0.00 38.30 4.30
5444 5613 2.042261 TAGGGCTCCCAACCTCCC 59.958 66.667 7.82 0.00 38.30 4.30
5445 5614 3.653122 TAGGGCTCCCAACCTCCCC 62.653 68.421 7.82 0.00 39.59 4.81
5447 5616 3.732849 GGCTCCCAACCTCCCCTG 61.733 72.222 0.00 0.00 0.00 4.45
5448 5617 3.732849 GCTCCCAACCTCCCCTGG 61.733 72.222 0.00 0.00 0.00 4.45
5449 5618 3.732849 CTCCCAACCTCCCCTGGC 61.733 72.222 0.00 0.00 0.00 4.85
5467 5636 3.712907 GGCACGCTAGGGTTCCCA 61.713 66.667 16.29 0.00 0.00 4.37
5468 5637 2.349755 GCACGCTAGGGTTCCCAA 59.650 61.111 10.17 0.00 0.00 4.12
5469 5638 2.038837 GCACGCTAGGGTTCCCAAC 61.039 63.158 10.17 0.00 0.00 3.77
5482 5651 4.311520 GTTCCCAACCTATACCAACCTT 57.688 45.455 0.00 0.00 0.00 3.50
5483 5652 4.669700 GTTCCCAACCTATACCAACCTTT 58.330 43.478 0.00 0.00 0.00 3.11
5484 5653 5.818887 GTTCCCAACCTATACCAACCTTTA 58.181 41.667 0.00 0.00 0.00 1.85
5485 5654 5.440207 TCCCAACCTATACCAACCTTTAC 57.560 43.478 0.00 0.00 0.00 2.01
5486 5655 4.227982 TCCCAACCTATACCAACCTTTACC 59.772 45.833 0.00 0.00 0.00 2.85
5487 5656 4.529897 CCAACCTATACCAACCTTTACCC 58.470 47.826 0.00 0.00 0.00 3.69
5488 5657 4.193865 CAACCTATACCAACCTTTACCCG 58.806 47.826 0.00 0.00 0.00 5.28
5489 5658 3.723325 ACCTATACCAACCTTTACCCGA 58.277 45.455 0.00 0.00 0.00 5.14
5490 5659 4.301205 ACCTATACCAACCTTTACCCGAT 58.699 43.478 0.00 0.00 0.00 4.18
5491 5660 4.723285 ACCTATACCAACCTTTACCCGATT 59.277 41.667 0.00 0.00 0.00 3.34
5492 5661 5.192321 ACCTATACCAACCTTTACCCGATTT 59.808 40.000 0.00 0.00 0.00 2.17
5493 5662 5.761726 CCTATACCAACCTTTACCCGATTTC 59.238 44.000 0.00 0.00 0.00 2.17
5494 5663 3.801307 ACCAACCTTTACCCGATTTCT 57.199 42.857 0.00 0.00 0.00 2.52
5495 5664 3.682696 ACCAACCTTTACCCGATTTCTC 58.317 45.455 0.00 0.00 0.00 2.87
5496 5665 3.073356 ACCAACCTTTACCCGATTTCTCA 59.927 43.478 0.00 0.00 0.00 3.27
5497 5666 3.439129 CCAACCTTTACCCGATTTCTCAC 59.561 47.826 0.00 0.00 0.00 3.51
5498 5667 2.968675 ACCTTTACCCGATTTCTCACG 58.031 47.619 0.00 0.00 0.00 4.35
5499 5668 2.301009 ACCTTTACCCGATTTCTCACGT 59.699 45.455 0.00 0.00 0.00 4.49
5500 5669 3.244318 ACCTTTACCCGATTTCTCACGTT 60.244 43.478 0.00 0.00 0.00 3.99
5501 5670 3.124636 CCTTTACCCGATTTCTCACGTTG 59.875 47.826 0.00 0.00 0.00 4.10
5502 5671 2.373540 TACCCGATTTCTCACGTTGG 57.626 50.000 0.00 0.00 0.00 3.77
5503 5672 0.682852 ACCCGATTTCTCACGTTGGA 59.317 50.000 0.00 0.00 0.00 3.53
5504 5673 1.278127 ACCCGATTTCTCACGTTGGAT 59.722 47.619 0.00 0.00 0.00 3.41
5505 5674 2.290071 ACCCGATTTCTCACGTTGGATT 60.290 45.455 0.00 0.00 0.00 3.01
5506 5675 2.095853 CCCGATTTCTCACGTTGGATTG 59.904 50.000 0.00 0.00 0.00 2.67
5507 5676 3.000041 CCGATTTCTCACGTTGGATTGA 59.000 45.455 0.00 0.00 0.00 2.57
5508 5677 3.623060 CCGATTTCTCACGTTGGATTGAT 59.377 43.478 0.00 0.00 0.00 2.57
5509 5678 4.260375 CCGATTTCTCACGTTGGATTGATC 60.260 45.833 0.00 0.00 0.00 2.92
5519 5688 2.426651 GGATTGATCCTCGGGTCGA 58.573 57.895 2.72 0.00 43.73 4.20
5520 5689 0.969894 GGATTGATCCTCGGGTCGAT 59.030 55.000 0.00 0.00 43.73 3.59
5521 5690 1.067495 GGATTGATCCTCGGGTCGATC 60.067 57.143 15.37 15.37 43.73 3.69
5522 5691 1.889829 GATTGATCCTCGGGTCGATCT 59.110 52.381 16.12 0.00 36.62 2.75
5523 5692 2.651382 TTGATCCTCGGGTCGATCTA 57.349 50.000 0.00 0.00 36.62 1.98
5524 5693 1.893544 TGATCCTCGGGTCGATCTAC 58.106 55.000 0.00 0.00 36.62 2.59
5525 5694 1.142262 TGATCCTCGGGTCGATCTACA 59.858 52.381 0.00 0.00 36.62 2.74
5526 5695 1.536331 GATCCTCGGGTCGATCTACAC 59.464 57.143 0.00 0.00 34.61 2.90
5528 5697 1.094073 CCTCGGGTCGATCTACACGT 61.094 60.000 19.98 0.00 46.32 4.49
5529 5698 0.027716 CTCGGGTCGATCTACACGTG 59.972 60.000 19.98 15.48 46.32 4.49
5530 5699 0.391528 TCGGGTCGATCTACACGTGA 60.392 55.000 25.01 4.97 46.32 4.35
5531 5700 0.661552 CGGGTCGATCTACACGTGAT 59.338 55.000 25.01 5.02 41.36 3.06
5532 5701 1.333881 CGGGTCGATCTACACGTGATC 60.334 57.143 25.01 13.88 41.36 2.92
5533 5702 1.674441 GGGTCGATCTACACGTGATCA 59.326 52.381 25.01 4.96 40.03 2.92
5534 5703 2.293677 GGGTCGATCTACACGTGATCAT 59.706 50.000 25.01 10.04 40.03 2.45
5535 5704 3.556513 GGTCGATCTACACGTGATCATC 58.443 50.000 25.01 17.07 40.03 2.92
5536 5705 3.556513 GTCGATCTACACGTGATCATCC 58.443 50.000 25.01 5.60 40.03 3.51
5537 5706 3.003378 GTCGATCTACACGTGATCATCCA 59.997 47.826 25.01 5.63 40.03 3.41
5538 5707 3.003378 TCGATCTACACGTGATCATCCAC 59.997 47.826 25.01 4.79 40.03 4.02
5539 5708 3.243068 CGATCTACACGTGATCATCCACA 60.243 47.826 25.01 0.00 40.03 4.17
5540 5709 3.503827 TCTACACGTGATCATCCACAC 57.496 47.619 25.01 0.00 36.89 3.82
5541 5710 2.165641 TCTACACGTGATCATCCACACC 59.834 50.000 25.01 0.00 36.89 4.16
5542 5711 0.684535 ACACGTGATCATCCACACCA 59.315 50.000 25.01 0.00 36.89 4.17
5543 5712 1.071542 ACACGTGATCATCCACACCAA 59.928 47.619 25.01 0.00 36.89 3.67
5544 5713 2.150390 CACGTGATCATCCACACCAAA 58.850 47.619 10.90 0.00 36.89 3.28
5545 5714 2.551887 CACGTGATCATCCACACCAAAA 59.448 45.455 10.90 0.00 36.89 2.44
5546 5715 2.552315 ACGTGATCATCCACACCAAAAC 59.448 45.455 0.00 0.00 36.89 2.43
5547 5716 2.551887 CGTGATCATCCACACCAAAACA 59.448 45.455 0.00 0.00 36.89 2.83
5548 5717 3.365264 CGTGATCATCCACACCAAAACAG 60.365 47.826 0.00 0.00 36.89 3.16
5549 5718 2.557924 TGATCATCCACACCAAAACAGC 59.442 45.455 0.00 0.00 0.00 4.40
5550 5719 1.327303 TCATCCACACCAAAACAGCC 58.673 50.000 0.00 0.00 0.00 4.85
5551 5720 1.133513 TCATCCACACCAAAACAGCCT 60.134 47.619 0.00 0.00 0.00 4.58
5552 5721 2.107378 TCATCCACACCAAAACAGCCTA 59.893 45.455 0.00 0.00 0.00 3.93
5553 5722 2.270352 TCCACACCAAAACAGCCTAG 57.730 50.000 0.00 0.00 0.00 3.02
5554 5723 1.202879 TCCACACCAAAACAGCCTAGG 60.203 52.381 3.67 3.67 0.00 3.02
5555 5724 1.202879 CCACACCAAAACAGCCTAGGA 60.203 52.381 14.75 0.00 0.00 2.94
5556 5725 2.154462 CACACCAAAACAGCCTAGGAG 58.846 52.381 14.75 6.53 0.00 3.69
5557 5726 1.168714 CACCAAAACAGCCTAGGAGC 58.831 55.000 14.75 0.00 0.00 4.70
5558 5727 0.321653 ACCAAAACAGCCTAGGAGCG 60.322 55.000 14.75 1.51 38.01 5.03
5559 5728 0.321653 CCAAAACAGCCTAGGAGCGT 60.322 55.000 14.75 2.24 38.01 5.07
5560 5729 0.798776 CAAAACAGCCTAGGAGCGTG 59.201 55.000 14.75 6.14 38.01 5.34
5561 5730 0.321653 AAAACAGCCTAGGAGCGTGG 60.322 55.000 14.75 0.00 38.01 4.94
5562 5731 1.192146 AAACAGCCTAGGAGCGTGGA 61.192 55.000 14.75 0.00 38.01 4.02
5563 5732 0.978146 AACAGCCTAGGAGCGTGGAT 60.978 55.000 14.75 0.00 38.01 3.41
5564 5733 0.978146 ACAGCCTAGGAGCGTGGATT 60.978 55.000 14.75 0.00 38.01 3.01
5565 5734 0.249657 CAGCCTAGGAGCGTGGATTC 60.250 60.000 14.75 0.00 38.01 2.52
5566 5735 0.687757 AGCCTAGGAGCGTGGATTCA 60.688 55.000 14.75 0.00 38.01 2.57
5567 5736 0.394565 GCCTAGGAGCGTGGATTCAT 59.605 55.000 14.75 0.00 0.00 2.57
5568 5737 1.875576 GCCTAGGAGCGTGGATTCATG 60.876 57.143 14.75 0.00 0.00 3.07
5569 5738 1.270518 CCTAGGAGCGTGGATTCATGG 60.271 57.143 1.05 0.00 0.00 3.66
5570 5739 0.106708 TAGGAGCGTGGATTCATGGC 59.893 55.000 0.00 0.00 0.00 4.40
5571 5740 1.153086 GGAGCGTGGATTCATGGCT 60.153 57.895 2.39 2.39 37.93 4.75
5572 5741 1.442526 GGAGCGTGGATTCATGGCTG 61.443 60.000 7.20 0.00 36.25 4.85
5573 5742 1.442526 GAGCGTGGATTCATGGCTGG 61.443 60.000 7.20 0.00 36.25 4.85
5574 5743 1.451927 GCGTGGATTCATGGCTGGA 60.452 57.895 0.00 0.00 0.00 3.86
5575 5744 1.031571 GCGTGGATTCATGGCTGGAA 61.032 55.000 0.00 0.00 0.00 3.53
5576 5745 0.734889 CGTGGATTCATGGCTGGAAC 59.265 55.000 0.00 0.00 0.00 3.62
5577 5746 0.734889 GTGGATTCATGGCTGGAACG 59.265 55.000 0.00 0.00 0.00 3.95
5578 5747 0.394216 TGGATTCATGGCTGGAACGG 60.394 55.000 0.00 0.00 38.10 4.44
5587 5756 2.725008 CTGGAACGGCGGCAAAAA 59.275 55.556 13.24 0.00 0.00 1.94
5588 5757 1.288752 CTGGAACGGCGGCAAAAAT 59.711 52.632 13.24 0.00 0.00 1.82
5589 5758 1.006805 TGGAACGGCGGCAAAAATG 60.007 52.632 13.24 0.00 0.00 2.32
5590 5759 2.379634 GGAACGGCGGCAAAAATGC 61.380 57.895 13.24 0.00 0.00 3.56
5598 5767 4.458164 GCAAAAATGCCCTCGACG 57.542 55.556 0.00 0.00 0.00 5.12
5599 5768 1.154035 GCAAAAATGCCCTCGACGG 60.154 57.895 0.00 0.00 0.00 4.79
5600 5769 1.582610 GCAAAAATGCCCTCGACGGA 61.583 55.000 4.46 0.00 33.16 4.69
5601 5770 0.447801 CAAAAATGCCCTCGACGGAG 59.552 55.000 4.46 0.00 40.14 4.63
5602 5771 0.323629 AAAAATGCCCTCGACGGAGA 59.676 50.000 4.46 0.00 43.27 3.71
5603 5772 0.323629 AAAATGCCCTCGACGGAGAA 59.676 50.000 4.46 0.00 43.27 2.87
5604 5773 0.108138 AAATGCCCTCGACGGAGAAG 60.108 55.000 4.46 0.00 43.27 2.85
5605 5774 1.961180 AATGCCCTCGACGGAGAAGG 61.961 60.000 4.46 0.00 43.27 3.46
5606 5775 2.754658 GCCCTCGACGGAGAAGGA 60.755 66.667 4.46 0.00 43.27 3.36
5607 5776 2.776913 GCCCTCGACGGAGAAGGAG 61.777 68.421 4.46 0.00 43.27 3.69
5608 5777 2.122167 CCCTCGACGGAGAAGGAGG 61.122 68.421 2.03 0.00 43.27 4.30
5609 5778 2.122167 CCTCGACGGAGAAGGAGGG 61.122 68.421 0.00 0.00 43.27 4.30
5610 5779 2.754658 TCGACGGAGAAGGAGGGC 60.755 66.667 0.00 0.00 0.00 5.19
5611 5780 4.194720 CGACGGAGAAGGAGGGCG 62.195 72.222 0.00 0.00 0.00 6.13
5612 5781 3.839432 GACGGAGAAGGAGGGCGG 61.839 72.222 0.00 0.00 0.00 6.13
5613 5782 4.698625 ACGGAGAAGGAGGGCGGT 62.699 66.667 0.00 0.00 0.00 5.68
5614 5783 2.441532 CGGAGAAGGAGGGCGGTA 60.442 66.667 0.00 0.00 0.00 4.02
5615 5784 2.491022 CGGAGAAGGAGGGCGGTAG 61.491 68.421 0.00 0.00 0.00 3.18
5616 5785 2.798364 GGAGAAGGAGGGCGGTAGC 61.798 68.421 0.00 0.00 44.18 3.58
5617 5786 3.140225 GAGAAGGAGGGCGGTAGCG 62.140 68.421 10.57 10.57 46.35 4.26
5618 5787 4.222847 GAAGGAGGGCGGTAGCGG 62.223 72.222 17.08 0.00 46.35 5.52
5652 5821 3.049674 CGTGACGGTGGCTGCAAT 61.050 61.111 0.50 0.00 0.00 3.56
5653 5822 2.870372 GTGACGGTGGCTGCAATC 59.130 61.111 0.50 0.00 0.00 2.67
5654 5823 1.672356 GTGACGGTGGCTGCAATCT 60.672 57.895 0.50 0.00 0.00 2.40
5655 5824 1.672030 TGACGGTGGCTGCAATCTG 60.672 57.895 0.50 0.00 0.00 2.90
5656 5825 2.360350 ACGGTGGCTGCAATCTGG 60.360 61.111 0.50 0.00 0.00 3.86
5657 5826 2.046023 CGGTGGCTGCAATCTGGA 60.046 61.111 0.50 0.00 0.00 3.86
5658 5827 2.110967 CGGTGGCTGCAATCTGGAG 61.111 63.158 0.50 0.00 38.97 3.86
5659 5828 1.751927 GGTGGCTGCAATCTGGAGG 60.752 63.158 0.50 0.00 36.25 4.30
5660 5829 1.300963 GTGGCTGCAATCTGGAGGA 59.699 57.895 0.50 0.00 36.25 3.71
5661 5830 1.028868 GTGGCTGCAATCTGGAGGAC 61.029 60.000 0.50 0.00 36.25 3.85
5662 5831 1.452833 GGCTGCAATCTGGAGGACC 60.453 63.158 0.50 0.00 36.25 4.46
5663 5832 1.817099 GCTGCAATCTGGAGGACCG 60.817 63.158 0.00 0.00 36.25 4.79
5664 5833 1.153289 CTGCAATCTGGAGGACCGG 60.153 63.158 0.00 0.00 43.52 5.28
5665 5834 1.903877 CTGCAATCTGGAGGACCGGT 61.904 60.000 6.92 6.92 42.77 5.28
5666 5835 1.299976 GCAATCTGGAGGACCGGTT 59.700 57.895 9.42 0.00 42.77 4.44
5667 5836 0.322546 GCAATCTGGAGGACCGGTTT 60.323 55.000 9.42 0.00 42.77 3.27
5668 5837 1.886655 GCAATCTGGAGGACCGGTTTT 60.887 52.381 9.42 0.00 42.77 2.43
5669 5838 2.514803 CAATCTGGAGGACCGGTTTTT 58.485 47.619 9.42 0.00 42.77 1.94
5688 5857 3.370840 TTTGGACTGAATCTCCATGGG 57.629 47.619 13.02 2.57 37.65 4.00
5689 5858 1.216064 TGGACTGAATCTCCATGGGG 58.784 55.000 13.02 9.18 32.52 4.96
5690 5859 1.274358 TGGACTGAATCTCCATGGGGA 60.274 52.381 18.95 18.95 42.29 4.81
5698 5867 2.705410 TCCATGGGGAGGAGGAGG 59.295 66.667 13.02 0.00 38.64 4.30
5699 5868 1.946707 TCCATGGGGAGGAGGAGGA 60.947 63.158 13.02 0.00 38.64 3.71
5700 5869 1.768077 CCATGGGGAGGAGGAGGAC 60.768 68.421 2.85 0.00 35.59 3.85
5701 5870 1.768077 CATGGGGAGGAGGAGGACC 60.768 68.421 0.00 0.00 0.00 4.46
5712 5881 2.065899 AGGAGGACCTTGATCTCTCG 57.934 55.000 0.00 0.00 45.36 4.04
5713 5882 1.036707 GGAGGACCTTGATCTCTCGG 58.963 60.000 0.00 0.00 0.00 4.63
5714 5883 1.410365 GGAGGACCTTGATCTCTCGGA 60.410 57.143 0.00 0.00 0.00 4.55
5715 5884 1.953686 GAGGACCTTGATCTCTCGGAG 59.046 57.143 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.511850 TGTGTTTGTGAGAGCGATGG 58.488 50.000 0.00 0.00 0.00 3.51
51 52 6.149973 ACATGAACTCCATAGATGTGTTTGTG 59.850 38.462 0.00 0.00 33.31 3.33
114 115 1.202758 TGTGATTGGTCGGTGCTTCTT 60.203 47.619 0.00 0.00 0.00 2.52
125 126 5.046663 GGTCCATGGTTATTTTGTGATTGGT 60.047 40.000 12.58 0.00 0.00 3.67
160 161 3.327757 TGTGTTTGGGATTAGCAGAGAGT 59.672 43.478 0.00 0.00 0.00 3.24
260 261 5.886609 TCAACCAGAACTCATTTATTCCCA 58.113 37.500 0.00 0.00 0.00 4.37
328 329 7.004086 TGAGTATTTGAAGATTTGAAGGTGGT 58.996 34.615 0.00 0.00 0.00 4.16
353 354 5.882557 AGTGGACGAGCAAATTAATCTTGAT 59.117 36.000 11.94 7.38 0.00 2.57
415 416 2.117051 AGTCGGGAAATAGGGAAGACC 58.883 52.381 0.00 0.00 40.67 3.85
466 467 1.717937 CTTGATCGCGAGCAAAGGG 59.282 57.895 35.48 22.84 36.18 3.95
478 479 2.740447 ACGACGTTTTTAGGGCTTGATC 59.260 45.455 0.00 0.00 0.00 2.92
541 545 5.133830 CCAATTAGGGGGTGGAGTAAACTAT 59.866 44.000 0.00 0.00 34.05 2.12
666 672 8.375493 TCATGTACTACTCCAATCTAGGTTTT 57.625 34.615 0.00 0.00 0.00 2.43
677 683 2.047061 GCCCCATCATGTACTACTCCA 58.953 52.381 0.00 0.00 0.00 3.86
742 748 5.116882 ACAAACTGGATCTACGGATAAAGC 58.883 41.667 0.00 0.00 31.46 3.51
743 749 6.421202 GCTACAAACTGGATCTACGGATAAAG 59.579 42.308 0.00 0.00 31.46 1.85
929 940 1.761784 TGCAGTTTGAGCCAAATTGGT 59.238 42.857 14.17 0.20 40.02 3.67
1183 1194 6.650427 AAGATCTAAACAGGGTTGGAAAAC 57.350 37.500 0.00 0.00 0.00 2.43
1186 1197 5.497474 GCTAAGATCTAAACAGGGTTGGAA 58.503 41.667 0.00 0.00 0.00 3.53
1187 1198 4.080526 GGCTAAGATCTAAACAGGGTTGGA 60.081 45.833 0.00 0.00 0.00 3.53
1188 1199 4.080299 AGGCTAAGATCTAAACAGGGTTGG 60.080 45.833 0.00 0.00 0.00 3.77
1191 1202 4.362677 TGAGGCTAAGATCTAAACAGGGT 58.637 43.478 0.00 0.00 0.00 4.34
1192 1203 4.407296 ACTGAGGCTAAGATCTAAACAGGG 59.593 45.833 5.69 0.00 0.00 4.45
1193 1204 5.606348 ACTGAGGCTAAGATCTAAACAGG 57.394 43.478 5.69 0.00 0.00 4.00
1194 1205 7.065204 GGAAAACTGAGGCTAAGATCTAAACAG 59.935 40.741 5.69 0.00 0.00 3.16
1196 1207 6.879458 TGGAAAACTGAGGCTAAGATCTAAAC 59.121 38.462 5.69 0.00 0.00 2.01
1198 1209 6.620877 TGGAAAACTGAGGCTAAGATCTAA 57.379 37.500 5.69 0.00 0.00 2.10
1199 1210 6.183361 GGATGGAAAACTGAGGCTAAGATCTA 60.183 42.308 5.69 0.00 0.00 1.98
1200 1211 5.397334 GGATGGAAAACTGAGGCTAAGATCT 60.397 44.000 5.69 0.00 0.00 2.75
1201 1212 4.819088 GGATGGAAAACTGAGGCTAAGATC 59.181 45.833 5.69 0.93 0.00 2.75
1202 1213 4.385754 GGGATGGAAAACTGAGGCTAAGAT 60.386 45.833 5.69 0.00 0.00 2.40
1203 1214 3.054361 GGGATGGAAAACTGAGGCTAAGA 60.054 47.826 5.69 0.00 0.00 2.10
1204 1215 3.054065 AGGGATGGAAAACTGAGGCTAAG 60.054 47.826 0.00 0.00 0.00 2.18
1206 1217 2.239654 CAGGGATGGAAAACTGAGGCTA 59.760 50.000 0.00 0.00 32.86 3.93
1207 1218 1.005215 CAGGGATGGAAAACTGAGGCT 59.995 52.381 0.00 0.00 32.86 4.58
1209 1220 2.887151 ACAGGGATGGAAAACTGAGG 57.113 50.000 0.00 0.00 35.08 3.86
1212 1223 6.183347 AGATCTAAACAGGGATGGAAAACTG 58.817 40.000 0.00 0.00 37.01 3.16
1254 1265 6.615264 ATGAGTTAATCAGCTTGCTACATG 57.385 37.500 0.00 0.00 42.53 3.21
1255 1266 7.730084 TCTATGAGTTAATCAGCTTGCTACAT 58.270 34.615 0.00 0.00 42.53 2.29
1256 1267 7.112452 TCTATGAGTTAATCAGCTTGCTACA 57.888 36.000 0.00 0.00 42.53 2.74
1257 1268 9.352784 CTATCTATGAGTTAATCAGCTTGCTAC 57.647 37.037 0.00 0.00 42.53 3.58
1258 1269 8.526978 CCTATCTATGAGTTAATCAGCTTGCTA 58.473 37.037 0.00 0.00 42.53 3.49
1260 1271 7.158021 ACCTATCTATGAGTTAATCAGCTTGC 58.842 38.462 0.00 0.00 42.53 4.01
1270 1281 9.588096 TGCAGAATTAGACCTATCTATGAGTTA 57.412 33.333 0.00 0.00 37.28 2.24
1271 1282 8.484214 TGCAGAATTAGACCTATCTATGAGTT 57.516 34.615 0.00 0.00 37.28 3.01
1273 1284 7.035004 GCTGCAGAATTAGACCTATCTATGAG 58.965 42.308 20.43 0.00 37.28 2.90
1278 1289 5.363939 GTTGCTGCAGAATTAGACCTATCT 58.636 41.667 20.43 0.00 39.15 1.98
1287 1298 3.552604 GGAAACGTTGCTGCAGAATTA 57.447 42.857 20.43 0.00 0.00 1.40
1328 1339 4.256920 GGATACAAGCAGAAGCAAAGAGA 58.743 43.478 0.00 0.00 45.49 3.10
1331 1342 3.084039 TGGGATACAAGCAGAAGCAAAG 58.916 45.455 0.00 0.00 41.10 2.77
1339 1350 4.074970 AGAAAACAGTGGGATACAAGCAG 58.925 43.478 0.00 0.00 39.74 4.24
1376 1387 1.071385 CATCTGGGGGTACATCAGAGC 59.929 57.143 14.34 0.00 40.80 4.09
1391 1402 3.817084 TCCTTCTTGTTTGCAGACATCTG 59.183 43.478 11.30 4.43 46.40 2.90
1408 1419 0.038166 TGTTGGCAGGGTGATCCTTC 59.962 55.000 0.00 0.00 45.47 3.46
1413 1424 1.355381 TCATCTTGTTGGCAGGGTGAT 59.645 47.619 0.00 0.00 36.99 3.06
1418 1429 1.843368 ACCATCATCTTGTTGGCAGG 58.157 50.000 4.83 0.00 40.10 4.85
1527 1538 6.808212 AGAAAATCATTGTTTATCGCTTGTGG 59.192 34.615 0.00 0.00 0.00 4.17
1634 1645 7.561356 TCAGATACCAGAGAAATCATCACACTA 59.439 37.037 0.00 0.00 0.00 2.74
1782 1793 7.621285 TGGAGAGAAATCAGAGGAAGAAGATAA 59.379 37.037 0.00 0.00 0.00 1.75
1802 1813 8.253810 TCTCATTTGTAGTGTATTCTTGGAGAG 58.746 37.037 0.00 0.00 0.00 3.20
2168 2180 2.813754 ACATGTCGGTGGATTTGAAGTG 59.186 45.455 0.00 0.00 0.00 3.16
2178 2190 1.003355 AAGCCAGACATGTCGGTGG 60.003 57.895 26.56 25.15 34.09 4.61
2184 2196 1.242076 GTTCAGCAAGCCAGACATGT 58.758 50.000 0.00 0.00 0.00 3.21
2254 2313 0.677731 GGCTGCCATGTCACTTAGCA 60.678 55.000 15.17 0.00 33.05 3.49
2265 2324 1.033746 CGAAATGACCAGGCTGCCAT 61.034 55.000 22.65 11.58 0.00 4.40
2477 2543 3.823304 AGAGCCCTTTTCTAGCACTTTTG 59.177 43.478 0.00 0.00 0.00 2.44
2483 2549 3.788227 TTTCAGAGCCCTTTTCTAGCA 57.212 42.857 0.00 0.00 0.00 3.49
2516 2582 9.778741 ACATTGTGAACTTCAACTCTATAGAAA 57.221 29.630 3.57 0.00 0.00 2.52
2518 2584 8.807118 AGACATTGTGAACTTCAACTCTATAGA 58.193 33.333 1.69 1.69 0.00 1.98
2519 2585 8.867935 CAGACATTGTGAACTTCAACTCTATAG 58.132 37.037 0.00 0.00 0.00 1.31
2574 2660 2.179427 ACAAAGGGCTTAGGCAAATCC 58.821 47.619 8.32 0.00 40.87 3.01
2625 2716 1.067060 GGGCAGTCTTTTCTTGCGTTT 59.933 47.619 0.00 0.00 0.00 3.60
2710 2801 4.481195 GCTCCACAAGCCAGACAA 57.519 55.556 0.00 0.00 45.92 3.18
2764 2855 4.437495 CGTGCGCATTTACTTTTATCCATG 59.563 41.667 15.91 0.00 0.00 3.66
2803 2894 3.146847 GGAAAACAAGGAGTCATTCGGT 58.853 45.455 0.00 0.00 30.70 4.69
2936 3041 5.989551 AAACAAGATGCAAACAAATCACC 57.010 34.783 0.00 0.00 0.00 4.02
3164 3271 5.014228 ACCTAGGGCTTTGTGAGTTAAGATT 59.986 40.000 14.81 0.00 0.00 2.40
3172 3279 2.162681 CCAAACCTAGGGCTTTGTGAG 58.837 52.381 14.81 0.11 0.00 3.51
3182 3289 3.969976 TGAGATCTCCATCCAAACCTAGG 59.030 47.826 20.03 7.41 0.00 3.02
3354 3465 1.812571 CCCAGGAATATGCGGCATAAC 59.187 52.381 24.94 20.10 29.74 1.89
3712 3847 2.871096 TACTAAGCCACCAAACAGGG 57.129 50.000 0.00 0.00 43.89 4.45
3763 3904 5.440685 CGAATTTTAAGCACGACACTTCTT 58.559 37.500 0.00 0.00 0.00 2.52
3923 4073 5.437289 TGACAAGGCATGAAAACTGTTAG 57.563 39.130 0.00 0.00 0.00 2.34
3926 4076 7.394359 AGTTATATGACAAGGCATGAAAACTGT 59.606 33.333 0.00 0.00 31.04 3.55
3965 4115 5.414454 TGGTGTACTTTCCATCTGCATAAAC 59.586 40.000 0.00 0.00 0.00 2.01
4007 4158 2.325484 TGCAAGTACTTGAGGTGGAGA 58.675 47.619 34.43 8.01 42.93 3.71
4040 4191 4.475944 CTGGTGAAATAGCTTGTTTTCCG 58.524 43.478 0.00 0.00 32.14 4.30
4255 4408 0.521735 GGAAAGCCGAAAATGCTCGT 59.478 50.000 0.00 0.00 38.34 4.18
4263 4416 5.607477 CTGTACCTATATGGAAAGCCGAAA 58.393 41.667 0.00 0.00 39.71 3.46
4266 4419 3.244078 TGCTGTACCTATATGGAAAGCCG 60.244 47.826 0.32 0.00 37.85 5.52
4277 4430 1.866015 TGTCAGGCTGCTGTACCTAT 58.134 50.000 10.34 0.00 33.38 2.57
4311 4464 0.613777 GGCGAGGAATCCCCGATAAT 59.386 55.000 7.57 0.00 40.87 1.28
4331 4484 0.317479 GTTGTGGTAGCCGTCTCAGT 59.683 55.000 0.00 0.00 0.00 3.41
4400 4553 1.884235 CCAACTCGACCAAGCTCTTT 58.116 50.000 0.00 0.00 0.00 2.52
4447 4600 1.227943 AAAGTGAGGCGCTCAAGCA 60.228 52.632 7.64 0.00 42.46 3.91
4451 4604 1.301716 GTCCAAAGTGAGGCGCTCA 60.302 57.895 7.64 6.39 38.25 4.26
4508 4661 7.914427 ATAGTACCATCTGTCAGGTTTATCA 57.086 36.000 0.00 0.00 39.31 2.15
4621 4774 3.899734 TCAATGTGTTTTCTGATTGCGG 58.100 40.909 0.00 0.00 0.00 5.69
4671 4824 0.813184 CTGCAGGGCATGACGATTTT 59.187 50.000 5.57 0.00 38.13 1.82
4788 4941 2.650322 ACCTCACACAACCATCGTTTT 58.350 42.857 0.00 0.00 0.00 2.43
4807 4960 1.270147 ACAGAGTACGGCCTGTGAAAC 60.270 52.381 14.70 0.00 41.59 2.78
4813 4966 0.038526 ACGAAACAGAGTACGGCCTG 60.039 55.000 0.00 10.14 36.53 4.85
4933 5087 5.188434 TGATATCTCTGAAAACAGCAAGGG 58.812 41.667 3.98 0.00 0.00 3.95
4935 5089 7.606858 TTCTGATATCTCTGAAAACAGCAAG 57.393 36.000 3.98 0.00 36.68 4.01
5007 5161 6.522165 GCCGCATTCTTAAAGTACAAAAGTAC 59.478 38.462 0.00 0.00 0.00 2.73
5008 5162 6.205076 TGCCGCATTCTTAAAGTACAAAAGTA 59.795 34.615 0.00 0.00 0.00 2.24
5009 5163 5.009210 TGCCGCATTCTTAAAGTACAAAAGT 59.991 36.000 0.00 0.00 0.00 2.66
5010 5164 5.457140 TGCCGCATTCTTAAAGTACAAAAG 58.543 37.500 0.00 0.00 0.00 2.27
5011 5165 5.440234 TGCCGCATTCTTAAAGTACAAAA 57.560 34.783 0.00 0.00 0.00 2.44
5033 5187 6.166982 AGATTCGTAAGCAGCTAAAGAGTTT 58.833 36.000 0.00 0.00 37.18 2.66
5051 5205 3.809234 TGCACAAAATCAACGAGATTCG 58.191 40.909 7.99 0.00 46.09 3.34
5059 5213 5.174398 CAGACTGAACATGCACAAAATCAAC 59.826 40.000 0.00 0.00 0.00 3.18
5075 5229 7.147672 TGCACCTTCTATATTGATCAGACTGAA 60.148 37.037 9.70 0.00 0.00 3.02
5150 5304 0.751643 GGCGGGGTTCATGCTGTAAT 60.752 55.000 0.00 0.00 0.00 1.89
5295 5451 4.186856 TCATGACTTCAATGCGACACTA 57.813 40.909 0.00 0.00 0.00 2.74
5299 5468 6.968904 ACATAAAATCATGACTTCAATGCGAC 59.031 34.615 0.00 0.00 0.00 5.19
5300 5469 7.087409 ACATAAAATCATGACTTCAATGCGA 57.913 32.000 0.00 0.00 0.00 5.10
5301 5470 7.745022 AACATAAAATCATGACTTCAATGCG 57.255 32.000 0.00 0.00 0.00 4.73
5384 5553 4.152759 TGGGAAAAGTAGTATTGAAACGCG 59.847 41.667 3.53 3.53 0.00 6.01
5398 5567 0.482887 CAGGGGAGGTTGGGAAAAGT 59.517 55.000 0.00 0.00 0.00 2.66
5399 5568 0.251787 CCAGGGGAGGTTGGGAAAAG 60.252 60.000 0.00 0.00 0.00 2.27
5400 5569 1.857777 CCAGGGGAGGTTGGGAAAA 59.142 57.895 0.00 0.00 0.00 2.29
5401 5570 2.852281 GCCAGGGGAGGTTGGGAAA 61.852 63.158 0.00 0.00 34.96 3.13
5402 5571 3.264845 GCCAGGGGAGGTTGGGAA 61.265 66.667 0.00 0.00 34.96 3.97
5421 5590 4.096003 TTGGGAGCCCTAGCGTGC 62.096 66.667 7.16 0.00 46.67 5.34
5422 5591 2.125106 GTTGGGAGCCCTAGCGTG 60.125 66.667 7.16 0.00 46.67 5.34
5423 5592 3.400054 GGTTGGGAGCCCTAGCGT 61.400 66.667 7.16 0.00 46.67 5.07
5424 5593 3.083997 AGGTTGGGAGCCCTAGCG 61.084 66.667 12.31 0.00 46.67 4.26
5425 5594 2.747443 GGAGGTTGGGAGCCCTAGC 61.747 68.421 10.58 10.58 39.08 3.42
5426 5595 2.073101 GGGAGGTTGGGAGCCCTAG 61.073 68.421 7.16 0.00 37.59 3.02
5427 5596 2.042261 GGGAGGTTGGGAGCCCTA 59.958 66.667 7.16 0.00 37.59 3.53
5430 5599 3.732849 CAGGGGAGGTTGGGAGCC 61.733 72.222 0.00 0.00 0.00 4.70
5431 5600 3.732849 CCAGGGGAGGTTGGGAGC 61.733 72.222 0.00 0.00 0.00 4.70
5432 5601 3.732849 GCCAGGGGAGGTTGGGAG 61.733 72.222 0.00 0.00 34.96 4.30
5461 5630 4.311520 AAGGTTGGTATAGGTTGGGAAC 57.688 45.455 0.00 0.00 0.00 3.62
5462 5631 5.281141 GGTAAAGGTTGGTATAGGTTGGGAA 60.281 44.000 0.00 0.00 0.00 3.97
5463 5632 4.227982 GGTAAAGGTTGGTATAGGTTGGGA 59.772 45.833 0.00 0.00 0.00 4.37
5464 5633 4.529897 GGTAAAGGTTGGTATAGGTTGGG 58.470 47.826 0.00 0.00 0.00 4.12
5465 5634 4.529897 GGGTAAAGGTTGGTATAGGTTGG 58.470 47.826 0.00 0.00 0.00 3.77
5466 5635 4.080975 TCGGGTAAAGGTTGGTATAGGTTG 60.081 45.833 0.00 0.00 0.00 3.77
5467 5636 4.103342 TCGGGTAAAGGTTGGTATAGGTT 58.897 43.478 0.00 0.00 0.00 3.50
5468 5637 3.723325 TCGGGTAAAGGTTGGTATAGGT 58.277 45.455 0.00 0.00 0.00 3.08
5469 5638 4.968971 ATCGGGTAAAGGTTGGTATAGG 57.031 45.455 0.00 0.00 0.00 2.57
5470 5639 6.589135 AGAAATCGGGTAAAGGTTGGTATAG 58.411 40.000 0.00 0.00 0.00 1.31
5471 5640 6.156602 TGAGAAATCGGGTAAAGGTTGGTATA 59.843 38.462 0.00 0.00 0.00 1.47
5472 5641 5.045432 TGAGAAATCGGGTAAAGGTTGGTAT 60.045 40.000 0.00 0.00 0.00 2.73
5473 5642 4.286549 TGAGAAATCGGGTAAAGGTTGGTA 59.713 41.667 0.00 0.00 0.00 3.25
5474 5643 3.073356 TGAGAAATCGGGTAAAGGTTGGT 59.927 43.478 0.00 0.00 0.00 3.67
5475 5644 3.439129 GTGAGAAATCGGGTAAAGGTTGG 59.561 47.826 0.00 0.00 0.00 3.77
5476 5645 3.124636 CGTGAGAAATCGGGTAAAGGTTG 59.875 47.826 0.00 0.00 0.00 3.77
5477 5646 3.244318 ACGTGAGAAATCGGGTAAAGGTT 60.244 43.478 0.00 0.00 0.00 3.50
5478 5647 2.301009 ACGTGAGAAATCGGGTAAAGGT 59.699 45.455 0.00 0.00 0.00 3.50
5479 5648 2.968675 ACGTGAGAAATCGGGTAAAGG 58.031 47.619 0.00 0.00 0.00 3.11
5480 5649 3.124636 CCAACGTGAGAAATCGGGTAAAG 59.875 47.826 0.00 0.00 0.00 1.85
5481 5650 3.068560 CCAACGTGAGAAATCGGGTAAA 58.931 45.455 0.00 0.00 0.00 2.01
5482 5651 2.299582 TCCAACGTGAGAAATCGGGTAA 59.700 45.455 0.00 0.00 0.00 2.85
5483 5652 1.894466 TCCAACGTGAGAAATCGGGTA 59.106 47.619 0.00 0.00 0.00 3.69
5484 5653 0.682852 TCCAACGTGAGAAATCGGGT 59.317 50.000 0.00 0.00 0.00 5.28
5485 5654 2.024176 ATCCAACGTGAGAAATCGGG 57.976 50.000 0.00 0.00 0.00 5.14
5486 5655 3.000041 TCAATCCAACGTGAGAAATCGG 59.000 45.455 0.00 0.00 0.00 4.18
5487 5656 4.260375 GGATCAATCCAACGTGAGAAATCG 60.260 45.833 4.09 0.00 46.38 3.34
5488 5657 5.162000 GGATCAATCCAACGTGAGAAATC 57.838 43.478 4.09 0.00 46.38 2.17
5502 5671 1.889829 AGATCGACCCGAGGATCAATC 59.110 52.381 0.00 0.00 41.16 2.67
5503 5672 2.002505 AGATCGACCCGAGGATCAAT 57.997 50.000 0.00 0.00 41.16 2.57
5504 5673 2.228059 GTAGATCGACCCGAGGATCAA 58.772 52.381 0.00 0.00 41.16 2.57
5505 5674 1.142262 TGTAGATCGACCCGAGGATCA 59.858 52.381 3.33 0.00 41.16 2.92
5506 5675 1.536331 GTGTAGATCGACCCGAGGATC 59.464 57.143 3.33 0.00 39.91 3.36
5507 5676 1.606903 GTGTAGATCGACCCGAGGAT 58.393 55.000 3.33 0.00 39.91 3.24
5508 5677 0.812811 CGTGTAGATCGACCCGAGGA 60.813 60.000 4.94 0.00 39.91 3.71
5509 5678 1.094073 ACGTGTAGATCGACCCGAGG 61.094 60.000 16.72 1.13 39.91 4.63
5510 5679 0.027716 CACGTGTAGATCGACCCGAG 59.972 60.000 16.72 5.92 39.91 4.63
5511 5680 0.391528 TCACGTGTAGATCGACCCGA 60.392 55.000 16.72 0.00 41.13 5.14
5512 5681 0.661552 ATCACGTGTAGATCGACCCG 59.338 55.000 16.51 9.10 0.00 5.28
5513 5682 1.674441 TGATCACGTGTAGATCGACCC 59.326 52.381 16.51 0.00 43.73 4.46
5514 5683 3.556513 GATGATCACGTGTAGATCGACC 58.443 50.000 16.51 1.52 43.73 4.79
5515 5684 3.003378 TGGATGATCACGTGTAGATCGAC 59.997 47.826 16.51 8.91 43.73 4.20
5516 5685 3.003378 GTGGATGATCACGTGTAGATCGA 59.997 47.826 16.51 9.31 43.73 3.59
5517 5686 3.243068 TGTGGATGATCACGTGTAGATCG 60.243 47.826 16.51 0.00 43.73 3.69
5518 5687 4.045104 GTGTGGATGATCACGTGTAGATC 58.955 47.826 16.51 11.84 41.72 2.75
5519 5688 3.181475 GGTGTGGATGATCACGTGTAGAT 60.181 47.826 16.51 0.97 40.31 1.98
5520 5689 2.165641 GGTGTGGATGATCACGTGTAGA 59.834 50.000 16.51 0.00 40.31 2.59
5521 5690 2.094234 TGGTGTGGATGATCACGTGTAG 60.094 50.000 16.51 0.00 40.31 2.74
5522 5691 1.896465 TGGTGTGGATGATCACGTGTA 59.104 47.619 16.51 2.58 40.31 2.90
5523 5692 0.684535 TGGTGTGGATGATCACGTGT 59.315 50.000 16.51 2.57 40.31 4.49
5524 5693 1.807139 TTGGTGTGGATGATCACGTG 58.193 50.000 9.94 9.94 40.31 4.49
5525 5694 2.552315 GTTTTGGTGTGGATGATCACGT 59.448 45.455 0.00 0.00 40.31 4.49
5526 5695 2.551887 TGTTTTGGTGTGGATGATCACG 59.448 45.455 0.00 0.00 40.31 4.35
5527 5696 3.612479 GCTGTTTTGGTGTGGATGATCAC 60.612 47.826 0.00 0.00 38.09 3.06
5528 5697 2.557924 GCTGTTTTGGTGTGGATGATCA 59.442 45.455 0.00 0.00 0.00 2.92
5529 5698 2.094545 GGCTGTTTTGGTGTGGATGATC 60.095 50.000 0.00 0.00 0.00 2.92
5530 5699 1.895131 GGCTGTTTTGGTGTGGATGAT 59.105 47.619 0.00 0.00 0.00 2.45
5531 5700 1.133513 AGGCTGTTTTGGTGTGGATGA 60.134 47.619 0.00 0.00 0.00 2.92
5532 5701 1.331214 AGGCTGTTTTGGTGTGGATG 58.669 50.000 0.00 0.00 0.00 3.51
5533 5702 2.555227 CCTAGGCTGTTTTGGTGTGGAT 60.555 50.000 0.00 0.00 0.00 3.41
5534 5703 1.202879 CCTAGGCTGTTTTGGTGTGGA 60.203 52.381 0.00 0.00 0.00 4.02
5535 5704 1.202879 TCCTAGGCTGTTTTGGTGTGG 60.203 52.381 2.96 0.00 0.00 4.17
5536 5705 2.154462 CTCCTAGGCTGTTTTGGTGTG 58.846 52.381 2.96 0.00 0.00 3.82
5537 5706 1.545651 GCTCCTAGGCTGTTTTGGTGT 60.546 52.381 2.96 0.00 0.00 4.16
5538 5707 1.168714 GCTCCTAGGCTGTTTTGGTG 58.831 55.000 2.96 0.00 0.00 4.17
5539 5708 0.321653 CGCTCCTAGGCTGTTTTGGT 60.322 55.000 2.96 0.00 0.00 3.67
5540 5709 0.321653 ACGCTCCTAGGCTGTTTTGG 60.322 55.000 2.96 0.00 0.00 3.28
5541 5710 0.798776 CACGCTCCTAGGCTGTTTTG 59.201 55.000 2.96 0.00 0.00 2.44
5542 5711 0.321653 CCACGCTCCTAGGCTGTTTT 60.322 55.000 2.96 0.00 0.00 2.43
5543 5712 1.192146 TCCACGCTCCTAGGCTGTTT 61.192 55.000 2.96 0.00 0.00 2.83
5544 5713 0.978146 ATCCACGCTCCTAGGCTGTT 60.978 55.000 2.96 0.00 0.00 3.16
5545 5714 0.978146 AATCCACGCTCCTAGGCTGT 60.978 55.000 2.96 0.00 0.00 4.40
5546 5715 0.249657 GAATCCACGCTCCTAGGCTG 60.250 60.000 2.96 0.08 0.00 4.85
5547 5716 0.687757 TGAATCCACGCTCCTAGGCT 60.688 55.000 2.96 0.00 0.00 4.58
5548 5717 0.394565 ATGAATCCACGCTCCTAGGC 59.605 55.000 2.96 0.00 0.00 3.93
5549 5718 1.270518 CCATGAATCCACGCTCCTAGG 60.271 57.143 0.82 0.82 0.00 3.02
5550 5719 1.875576 GCCATGAATCCACGCTCCTAG 60.876 57.143 0.00 0.00 0.00 3.02
5551 5720 0.106708 GCCATGAATCCACGCTCCTA 59.893 55.000 0.00 0.00 0.00 2.94
5552 5721 1.153086 GCCATGAATCCACGCTCCT 60.153 57.895 0.00 0.00 0.00 3.69
5553 5722 1.153086 AGCCATGAATCCACGCTCC 60.153 57.895 0.00 0.00 28.27 4.70
5554 5723 1.442526 CCAGCCATGAATCCACGCTC 61.443 60.000 0.00 0.00 31.14 5.03
5555 5724 1.452651 CCAGCCATGAATCCACGCT 60.453 57.895 0.00 0.00 33.07 5.07
5556 5725 1.031571 TTCCAGCCATGAATCCACGC 61.032 55.000 0.00 0.00 0.00 5.34
5557 5726 0.734889 GTTCCAGCCATGAATCCACG 59.265 55.000 0.00 0.00 0.00 4.94
5558 5727 0.734889 CGTTCCAGCCATGAATCCAC 59.265 55.000 0.00 0.00 0.00 4.02
5559 5728 0.394216 CCGTTCCAGCCATGAATCCA 60.394 55.000 0.00 0.00 0.00 3.41
5560 5729 1.728490 GCCGTTCCAGCCATGAATCC 61.728 60.000 0.00 0.00 0.00 3.01
5561 5730 1.729881 GCCGTTCCAGCCATGAATC 59.270 57.895 0.00 0.00 0.00 2.52
5562 5731 2.114670 CGCCGTTCCAGCCATGAAT 61.115 57.895 0.00 0.00 0.00 2.57
5563 5732 2.745884 CGCCGTTCCAGCCATGAA 60.746 61.111 0.00 0.00 0.00 2.57
5564 5733 4.776322 CCGCCGTTCCAGCCATGA 62.776 66.667 0.00 0.00 0.00 3.07
5569 5738 2.763627 ATTTTTGCCGCCGTTCCAGC 62.764 55.000 0.00 0.00 0.00 4.85
5570 5739 1.008361 CATTTTTGCCGCCGTTCCAG 61.008 55.000 0.00 0.00 0.00 3.86
5571 5740 1.006805 CATTTTTGCCGCCGTTCCA 60.007 52.632 0.00 0.00 0.00 3.53
5572 5741 2.379634 GCATTTTTGCCGCCGTTCC 61.380 57.895 0.00 0.00 0.00 3.62
5573 5742 2.379634 GGCATTTTTGCCGCCGTTC 61.380 57.895 0.55 0.00 45.79 3.95
5574 5743 2.356913 GGCATTTTTGCCGCCGTT 60.357 55.556 0.55 0.00 45.79 4.44
5581 5750 1.154035 CCGTCGAGGGCATTTTTGC 60.154 57.895 11.85 0.00 35.97 3.68
5582 5751 0.447801 CTCCGTCGAGGGCATTTTTG 59.552 55.000 19.36 0.11 41.52 2.44
5583 5752 0.323629 TCTCCGTCGAGGGCATTTTT 59.676 50.000 19.36 0.00 41.52 1.94
5584 5753 0.323629 TTCTCCGTCGAGGGCATTTT 59.676 50.000 19.36 0.00 41.52 1.82
5585 5754 0.108138 CTTCTCCGTCGAGGGCATTT 60.108 55.000 19.36 0.00 41.52 2.32
5586 5755 1.517832 CTTCTCCGTCGAGGGCATT 59.482 57.895 19.36 0.00 41.52 3.56
5587 5756 2.427245 CCTTCTCCGTCGAGGGCAT 61.427 63.158 19.36 0.00 41.52 4.40
5588 5757 3.068691 CCTTCTCCGTCGAGGGCA 61.069 66.667 19.36 5.43 41.52 5.36
5589 5758 2.754658 TCCTTCTCCGTCGAGGGC 60.755 66.667 19.36 0.00 41.52 5.19
5590 5759 2.122167 CCTCCTTCTCCGTCGAGGG 61.122 68.421 18.14 18.14 38.61 4.30
5591 5760 2.122167 CCCTCCTTCTCCGTCGAGG 61.122 68.421 0.00 0.00 41.41 4.63
5592 5761 2.776913 GCCCTCCTTCTCCGTCGAG 61.777 68.421 0.00 0.00 37.48 4.04
5593 5762 2.754658 GCCCTCCTTCTCCGTCGA 60.755 66.667 0.00 0.00 0.00 4.20
5594 5763 4.194720 CGCCCTCCTTCTCCGTCG 62.195 72.222 0.00 0.00 0.00 5.12
5595 5764 3.839432 CCGCCCTCCTTCTCCGTC 61.839 72.222 0.00 0.00 0.00 4.79
5596 5765 3.292481 TACCGCCCTCCTTCTCCGT 62.292 63.158 0.00 0.00 0.00 4.69
5597 5766 2.441532 TACCGCCCTCCTTCTCCG 60.442 66.667 0.00 0.00 0.00 4.63
5598 5767 2.798364 GCTACCGCCCTCCTTCTCC 61.798 68.421 0.00 0.00 0.00 3.71
5599 5768 2.816012 GCTACCGCCCTCCTTCTC 59.184 66.667 0.00 0.00 0.00 2.87
5600 5769 3.148279 CGCTACCGCCCTCCTTCT 61.148 66.667 0.00 0.00 0.00 2.85
5601 5770 4.222847 CCGCTACCGCCCTCCTTC 62.223 72.222 0.00 0.00 0.00 3.46
5635 5804 3.027170 GATTGCAGCCACCGTCACG 62.027 63.158 0.00 0.00 0.00 4.35
5636 5805 1.672356 AGATTGCAGCCACCGTCAC 60.672 57.895 0.00 0.00 0.00 3.67
5637 5806 1.672030 CAGATTGCAGCCACCGTCA 60.672 57.895 0.00 0.00 0.00 4.35
5638 5807 2.401766 CCAGATTGCAGCCACCGTC 61.402 63.158 0.00 0.00 0.00 4.79
5639 5808 2.360350 CCAGATTGCAGCCACCGT 60.360 61.111 0.00 0.00 0.00 4.83
5640 5809 2.046023 TCCAGATTGCAGCCACCG 60.046 61.111 0.00 0.00 0.00 4.94
5641 5810 1.751927 CCTCCAGATTGCAGCCACC 60.752 63.158 0.00 0.00 0.00 4.61
5642 5811 1.028868 GTCCTCCAGATTGCAGCCAC 61.029 60.000 0.00 0.00 0.00 5.01
5643 5812 1.300963 GTCCTCCAGATTGCAGCCA 59.699 57.895 0.00 0.00 0.00 4.75
5644 5813 1.452833 GGTCCTCCAGATTGCAGCC 60.453 63.158 0.00 0.00 0.00 4.85
5645 5814 1.817099 CGGTCCTCCAGATTGCAGC 60.817 63.158 0.00 0.00 0.00 5.25
5646 5815 1.153289 CCGGTCCTCCAGATTGCAG 60.153 63.158 0.00 0.00 0.00 4.41
5647 5816 1.488705 AACCGGTCCTCCAGATTGCA 61.489 55.000 8.04 0.00 0.00 4.08
5648 5817 0.322546 AAACCGGTCCTCCAGATTGC 60.323 55.000 8.04 0.00 0.00 3.56
5649 5818 2.200373 AAAACCGGTCCTCCAGATTG 57.800 50.000 8.04 0.00 0.00 2.67
5650 5819 2.971901 AAAAACCGGTCCTCCAGATT 57.028 45.000 8.04 0.00 0.00 2.40
5671 5840 1.511613 TCCCCATGGAGATTCAGTCC 58.488 55.000 15.22 0.00 35.03 3.85
5681 5850 1.946707 TCCTCCTCCTCCCCATGGA 60.947 63.158 15.22 0.00 38.75 3.41
5682 5851 1.768077 GTCCTCCTCCTCCCCATGG 60.768 68.421 4.14 4.14 0.00 3.66
5683 5852 1.768077 GGTCCTCCTCCTCCCCATG 60.768 68.421 0.00 0.00 0.00 3.66
5684 5853 1.541168 AAGGTCCTCCTCCTCCCCAT 61.541 60.000 0.00 0.00 44.35 4.00
5685 5854 2.184631 AAGGTCCTCCTCCTCCCCA 61.185 63.158 0.00 0.00 44.35 4.96
5686 5855 1.690985 CAAGGTCCTCCTCCTCCCC 60.691 68.421 0.00 0.00 44.35 4.81
5687 5856 0.030603 ATCAAGGTCCTCCTCCTCCC 60.031 60.000 0.00 0.00 44.35 4.30
5688 5857 1.062505 AGATCAAGGTCCTCCTCCTCC 60.063 57.143 0.00 0.00 44.35 4.30
5689 5858 2.091333 AGAGATCAAGGTCCTCCTCCTC 60.091 54.545 0.00 0.00 44.35 3.71
5690 5859 1.936631 AGAGATCAAGGTCCTCCTCCT 59.063 52.381 0.00 0.00 44.35 3.69
5691 5860 2.316108 GAGAGATCAAGGTCCTCCTCC 58.684 57.143 0.00 0.00 44.35 4.30
5692 5861 1.953686 CGAGAGATCAAGGTCCTCCTC 59.046 57.143 0.00 0.00 44.35 3.71
5694 5863 1.036707 CCGAGAGATCAAGGTCCTCC 58.963 60.000 0.00 0.00 0.00 4.30
5695 5864 1.953686 CTCCGAGAGATCAAGGTCCTC 59.046 57.143 0.00 0.00 0.00 3.71
5696 5865 2.065899 CTCCGAGAGATCAAGGTCCT 57.934 55.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.