Multiple sequence alignment - TraesCS5B01G279800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G279800 chr5B 100.000 3218 0 0 1 3218 465258219 465261436 0.000000e+00 5943.0
1 TraesCS5B01G279800 chr5B 98.087 366 7 0 116 481 465274883 465275248 3.500000e-179 638.0
2 TraesCS5B01G279800 chr5B 100.000 33 0 0 473 505 465275256 465275288 9.640000e-06 62.1
3 TraesCS5B01G279800 chr1A 98.898 2269 25 0 950 3218 503317260 503319528 0.000000e+00 4052.0
4 TraesCS5B01G279800 chr1A 97.941 340 7 0 614 953 503316888 503317227 9.940000e-165 590.0
5 TraesCS5B01G279800 chr1A 94.595 37 1 1 2214 2249 20202183 20202147 4.480000e-04 56.5
6 TraesCS5B01G279800 chr5A 98.936 2255 24 0 964 3218 122338070 122335816 0.000000e+00 4032.0
7 TraesCS5B01G279800 chr3A 98.780 984 12 0 2235 3218 681402093 681403076 0.000000e+00 1751.0
8 TraesCS5B01G279800 chr3A 86.726 113 15 0 1 113 530626777 530626665 3.370000e-25 126.0
9 TraesCS5B01G279800 chr7B 94.763 401 13 4 111 505 415333240 415333638 4.560000e-173 617.0
10 TraesCS5B01G279800 chr7B 85.022 227 30 4 117 343 282547981 282547759 8.980000e-56 228.0
11 TraesCS5B01G279800 chr7D 92.761 373 21 4 116 487 201860701 201860334 4.730000e-148 534.0
12 TraesCS5B01G279800 chr7D 93.536 263 14 2 117 379 201875987 201875728 3.890000e-104 388.0
13 TraesCS5B01G279800 chr7D 93.519 108 4 2 381 487 201875559 201875454 1.200000e-34 158.0
14 TraesCS5B01G279800 chr3B 86.196 326 28 12 169 480 340216938 340216616 1.430000e-88 337.0
15 TraesCS5B01G279800 chr2D 89.796 196 20 0 117 312 25732048 25731853 5.330000e-63 252.0
16 TraesCS5B01G279800 chr5D 85.903 227 27 4 117 343 369105232 369105011 1.490000e-58 237.0
17 TraesCS5B01G279800 chr6B 99.091 110 1 0 3109 3218 3742184 3742293 7.040000e-47 198.0
18 TraesCS5B01G279800 chr7A 90.351 114 11 0 1 114 449445782 449445669 2.000000e-32 150.0
19 TraesCS5B01G279800 chr7A 89.474 114 12 0 1 114 428390359 428390472 9.300000e-31 145.0
20 TraesCS5B01G279800 chr2A 89.474 114 12 0 1 114 605563687 605563574 9.300000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G279800 chr5B 465258219 465261436 3217 False 5943 5943 100.0000 1 3218 1 chr5B.!!$F1 3217
1 TraesCS5B01G279800 chr1A 503316888 503319528 2640 False 2321 4052 98.4195 614 3218 2 chr1A.!!$F1 2604
2 TraesCS5B01G279800 chr5A 122335816 122338070 2254 True 4032 4032 98.9360 964 3218 1 chr5A.!!$R1 2254
3 TraesCS5B01G279800 chr3A 681402093 681403076 983 False 1751 1751 98.7800 2235 3218 1 chr3A.!!$F1 983
4 TraesCS5B01G279800 chr7D 201875454 201875987 533 True 273 388 93.5275 117 487 2 chr7D.!!$R2 370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 468 0.031043 CACACACACACATGGGCTTG 59.969 55.0 0.0 0.0 29.2 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2388 1.153489 CTGTCGAGGACATGCCCAG 60.153 63.158 0.0 0.0 41.94 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.820871 AAGTGACGGATCAGAGGAGC 59.179 55.000 0.00 0.00 34.75 4.70
21 22 1.064946 GTGACGGATCAGAGGAGCG 59.935 63.158 0.00 0.00 34.75 5.03
22 23 1.378646 TGACGGATCAGAGGAGCGT 60.379 57.895 0.00 0.00 0.00 5.07
23 24 1.357334 GACGGATCAGAGGAGCGTC 59.643 63.158 0.00 1.17 0.00 5.19
24 25 2.065906 GACGGATCAGAGGAGCGTCC 62.066 65.000 0.00 0.00 36.58 4.79
25 26 2.725008 GGATCAGAGGAGCGTCCG 59.275 66.667 0.00 0.00 42.75 4.79
26 27 2.122167 GGATCAGAGGAGCGTCCGT 61.122 63.158 0.00 0.00 42.75 4.69
27 28 1.668101 GGATCAGAGGAGCGTCCGTT 61.668 60.000 0.00 0.00 42.75 4.44
28 29 0.248702 GATCAGAGGAGCGTCCGTTC 60.249 60.000 0.00 0.00 42.75 3.95
29 30 0.681564 ATCAGAGGAGCGTCCGTTCT 60.682 55.000 3.64 0.00 42.75 3.01
30 31 0.894184 TCAGAGGAGCGTCCGTTCTT 60.894 55.000 3.64 0.00 42.75 2.52
31 32 0.038159 CAGAGGAGCGTCCGTTCTTT 60.038 55.000 3.64 0.00 42.75 2.52
32 33 1.201647 CAGAGGAGCGTCCGTTCTTTA 59.798 52.381 3.64 0.00 42.75 1.85
33 34 2.100989 AGAGGAGCGTCCGTTCTTTAT 58.899 47.619 3.64 0.00 42.75 1.40
34 35 2.159226 AGAGGAGCGTCCGTTCTTTATG 60.159 50.000 3.64 0.00 42.75 1.90
35 36 0.651031 GGAGCGTCCGTTCTTTATGC 59.349 55.000 3.64 0.00 0.00 3.14
36 37 0.651031 GAGCGTCCGTTCTTTATGCC 59.349 55.000 0.00 0.00 0.00 4.40
37 38 1.082117 AGCGTCCGTTCTTTATGCCG 61.082 55.000 0.00 0.00 0.00 5.69
38 39 1.347221 CGTCCGTTCTTTATGCCGC 59.653 57.895 0.00 0.00 0.00 6.53
39 40 1.719709 GTCCGTTCTTTATGCCGCC 59.280 57.895 0.00 0.00 0.00 6.13
40 41 1.812093 TCCGTTCTTTATGCCGCCG 60.812 57.895 0.00 0.00 0.00 6.46
41 42 2.707039 CGTTCTTTATGCCGCCGG 59.293 61.111 0.00 0.00 0.00 6.13
42 43 2.819552 CGTTCTTTATGCCGCCGGG 61.820 63.158 4.77 0.00 0.00 5.73
43 44 1.450669 GTTCTTTATGCCGCCGGGA 60.451 57.895 4.77 0.62 34.06 5.14
44 45 1.450669 TTCTTTATGCCGCCGGGAC 60.451 57.895 4.77 0.00 34.06 4.46
45 46 2.124901 CTTTATGCCGCCGGGACA 60.125 61.111 4.77 0.00 34.06 4.02
46 47 1.525995 CTTTATGCCGCCGGGACAT 60.526 57.895 4.77 3.05 35.29 3.06
47 48 1.077357 TTTATGCCGCCGGGACATT 60.077 52.632 4.77 0.00 33.79 2.71
48 49 0.681564 TTTATGCCGCCGGGACATTT 60.682 50.000 4.77 0.00 33.79 2.32
49 50 0.681564 TTATGCCGCCGGGACATTTT 60.682 50.000 4.77 0.00 33.79 1.82
50 51 1.380403 TATGCCGCCGGGACATTTTG 61.380 55.000 4.77 0.00 33.79 2.44
51 52 3.370231 GCCGCCGGGACATTTTGT 61.370 61.111 4.77 0.00 34.06 2.83
52 53 2.566010 CCGCCGGGACATTTTGTG 59.434 61.111 2.18 0.00 34.06 3.33
53 54 2.566010 CGCCGGGACATTTTGTGG 59.434 61.111 2.18 0.00 0.00 4.17
54 55 1.969064 CGCCGGGACATTTTGTGGA 60.969 57.895 2.18 0.00 0.00 4.02
55 56 1.883021 GCCGGGACATTTTGTGGAG 59.117 57.895 2.18 0.00 0.00 3.86
56 57 1.595093 GCCGGGACATTTTGTGGAGG 61.595 60.000 2.18 0.00 0.00 4.30
57 58 0.965363 CCGGGACATTTTGTGGAGGG 60.965 60.000 0.00 0.00 0.00 4.30
58 59 0.965363 CGGGACATTTTGTGGAGGGG 60.965 60.000 0.00 0.00 0.00 4.79
59 60 0.614697 GGGACATTTTGTGGAGGGGG 60.615 60.000 0.00 0.00 0.00 5.40
60 61 1.257750 GGACATTTTGTGGAGGGGGC 61.258 60.000 0.00 0.00 0.00 5.80
61 62 0.251787 GACATTTTGTGGAGGGGGCT 60.252 55.000 0.00 0.00 0.00 5.19
62 63 0.190815 ACATTTTGTGGAGGGGGCTT 59.809 50.000 0.00 0.00 0.00 4.35
63 64 0.897621 CATTTTGTGGAGGGGGCTTC 59.102 55.000 0.00 0.00 0.00 3.86
64 65 0.786435 ATTTTGTGGAGGGGGCTTCT 59.214 50.000 0.00 0.00 0.00 2.85
65 66 0.178964 TTTTGTGGAGGGGGCTTCTG 60.179 55.000 0.00 0.00 0.00 3.02
66 67 2.080336 TTTGTGGAGGGGGCTTCTGG 62.080 60.000 0.00 0.00 0.00 3.86
67 68 4.432741 GTGGAGGGGGCTTCTGGC 62.433 72.222 0.00 0.00 40.90 4.85
77 78 3.882131 GCTTCTGGCCCAGATTACA 57.118 52.632 15.62 0.00 40.39 2.41
78 79 1.673168 GCTTCTGGCCCAGATTACAG 58.327 55.000 15.62 10.07 40.39 2.74
79 80 1.748591 GCTTCTGGCCCAGATTACAGG 60.749 57.143 15.62 2.56 40.39 4.00
80 81 1.561542 CTTCTGGCCCAGATTACAGGT 59.438 52.381 15.62 0.00 40.39 4.00
81 82 1.204146 TCTGGCCCAGATTACAGGTC 58.796 55.000 10.05 0.00 35.39 3.85
82 83 0.181350 CTGGCCCAGATTACAGGTCC 59.819 60.000 4.15 0.00 32.44 4.46
83 84 1.279025 TGGCCCAGATTACAGGTCCC 61.279 60.000 0.00 0.00 0.00 4.46
84 85 1.146263 GCCCAGATTACAGGTCCCG 59.854 63.158 0.00 0.00 0.00 5.14
85 86 1.335132 GCCCAGATTACAGGTCCCGA 61.335 60.000 0.00 0.00 0.00 5.14
86 87 0.753262 CCCAGATTACAGGTCCCGAG 59.247 60.000 0.00 0.00 0.00 4.63
87 88 0.753262 CCAGATTACAGGTCCCGAGG 59.247 60.000 0.00 0.00 0.00 4.63
88 89 1.688311 CCAGATTACAGGTCCCGAGGA 60.688 57.143 0.00 0.00 0.00 3.71
89 90 1.683917 CAGATTACAGGTCCCGAGGAG 59.316 57.143 0.00 0.00 29.39 3.69
90 91 1.041437 GATTACAGGTCCCGAGGAGG 58.959 60.000 0.00 0.00 40.63 4.30
91 92 0.338814 ATTACAGGTCCCGAGGAGGT 59.661 55.000 0.00 0.00 38.74 3.85
92 93 0.115745 TTACAGGTCCCGAGGAGGTT 59.884 55.000 0.00 0.00 38.74 3.50
93 94 1.002069 TACAGGTCCCGAGGAGGTTA 58.998 55.000 0.00 0.00 38.74 2.85
94 95 0.338814 ACAGGTCCCGAGGAGGTTAT 59.661 55.000 0.00 0.00 38.74 1.89
95 96 1.041437 CAGGTCCCGAGGAGGTTATC 58.959 60.000 0.00 0.00 38.74 1.75
96 97 0.467659 AGGTCCCGAGGAGGTTATCG 60.468 60.000 0.00 0.00 38.74 2.92
100 101 2.735237 CGAGGAGGTTATCGGGGC 59.265 66.667 0.00 0.00 35.33 5.80
101 102 1.833049 CGAGGAGGTTATCGGGGCT 60.833 63.158 0.00 0.00 35.33 5.19
102 103 1.400530 CGAGGAGGTTATCGGGGCTT 61.401 60.000 0.00 0.00 35.33 4.35
103 104 0.837940 GAGGAGGTTATCGGGGCTTT 59.162 55.000 0.00 0.00 0.00 3.51
104 105 0.837940 AGGAGGTTATCGGGGCTTTC 59.162 55.000 0.00 0.00 0.00 2.62
105 106 0.532196 GGAGGTTATCGGGGCTTTCG 60.532 60.000 0.00 0.00 0.00 3.46
106 107 0.177373 GAGGTTATCGGGGCTTTCGT 59.823 55.000 0.00 0.00 0.00 3.85
107 108 0.107848 AGGTTATCGGGGCTTTCGTG 60.108 55.000 0.00 0.00 0.00 4.35
108 109 1.093496 GGTTATCGGGGCTTTCGTGG 61.093 60.000 0.00 0.00 0.00 4.94
109 110 0.392060 GTTATCGGGGCTTTCGTGGT 60.392 55.000 0.00 0.00 0.00 4.16
110 111 0.391927 TTATCGGGGCTTTCGTGGTG 60.392 55.000 0.00 0.00 0.00 4.17
111 112 2.246761 TATCGGGGCTTTCGTGGTGG 62.247 60.000 0.00 0.00 0.00 4.61
112 113 4.636435 CGGGGCTTTCGTGGTGGT 62.636 66.667 0.00 0.00 0.00 4.16
113 114 2.751688 GGGGCTTTCGTGGTGGTA 59.248 61.111 0.00 0.00 0.00 3.25
114 115 1.673337 GGGGCTTTCGTGGTGGTAC 60.673 63.158 0.00 0.00 0.00 3.34
115 116 1.071814 GGGCTTTCGTGGTGGTACA 59.928 57.895 0.00 0.00 0.00 2.90
129 130 4.141733 TGGTGGTACATGATGTGGACATAG 60.142 45.833 8.61 0.00 44.00 2.23
268 269 7.857734 TTATTTCATGCAGGATTAACGAAGA 57.142 32.000 0.03 0.00 0.00 2.87
269 270 6.949352 ATTTCATGCAGGATTAACGAAGAT 57.051 33.333 0.03 0.00 0.00 2.40
270 271 6.757897 TTTCATGCAGGATTAACGAAGATT 57.242 33.333 0.03 0.00 0.00 2.40
271 272 6.757897 TTCATGCAGGATTAACGAAGATTT 57.242 33.333 0.03 0.00 0.00 2.17
272 273 7.857734 TTCATGCAGGATTAACGAAGATTTA 57.142 32.000 0.03 0.00 0.00 1.40
273 274 8.450578 TTCATGCAGGATTAACGAAGATTTAT 57.549 30.769 0.03 0.00 0.00 1.40
274 275 8.450578 TCATGCAGGATTAACGAAGATTTATT 57.549 30.769 0.00 0.00 0.00 1.40
275 276 8.559536 TCATGCAGGATTAACGAAGATTTATTC 58.440 33.333 0.00 0.00 0.00 1.75
276 277 7.857734 TGCAGGATTAACGAAGATTTATTCA 57.142 32.000 0.00 0.00 0.00 2.57
277 278 8.275015 TGCAGGATTAACGAAGATTTATTCAA 57.725 30.769 0.00 0.00 0.00 2.69
278 279 8.735315 TGCAGGATTAACGAAGATTTATTCAAA 58.265 29.630 0.00 0.00 0.00 2.69
279 280 9.010366 GCAGGATTAACGAAGATTTATTCAAAC 57.990 33.333 0.00 0.00 0.00 2.93
280 281 9.503427 CAGGATTAACGAAGATTTATTCAAACC 57.497 33.333 0.00 0.00 0.00 3.27
281 282 9.238368 AGGATTAACGAAGATTTATTCAAACCA 57.762 29.630 0.00 0.00 0.00 3.67
282 283 9.285770 GGATTAACGAAGATTTATTCAAACCAC 57.714 33.333 0.00 0.00 0.00 4.16
283 284 8.889849 ATTAACGAAGATTTATTCAAACCACG 57.110 30.769 0.00 0.00 0.00 4.94
284 285 5.934935 ACGAAGATTTATTCAAACCACGT 57.065 34.783 0.00 0.00 0.00 4.49
285 286 5.685841 ACGAAGATTTATTCAAACCACGTG 58.314 37.500 9.08 9.08 0.00 4.49
286 287 5.237779 ACGAAGATTTATTCAAACCACGTGT 59.762 36.000 15.65 0.00 0.00 4.49
287 288 5.788531 CGAAGATTTATTCAAACCACGTGTC 59.211 40.000 15.65 0.36 0.00 3.67
288 289 6.565060 CGAAGATTTATTCAAACCACGTGTCA 60.565 38.462 15.65 0.00 0.00 3.58
289 290 6.627395 AGATTTATTCAAACCACGTGTCAA 57.373 33.333 15.65 0.00 0.00 3.18
290 291 6.668323 AGATTTATTCAAACCACGTGTCAAG 58.332 36.000 15.65 0.92 0.00 3.02
291 292 6.485313 AGATTTATTCAAACCACGTGTCAAGA 59.515 34.615 15.65 4.38 0.00 3.02
292 293 6.627395 TTTATTCAAACCACGTGTCAAGAT 57.373 33.333 15.65 4.04 0.00 2.40
293 294 7.731882 TTTATTCAAACCACGTGTCAAGATA 57.268 32.000 15.65 3.09 0.00 1.98
294 295 5.607119 ATTCAAACCACGTGTCAAGATAC 57.393 39.130 15.65 0.00 0.00 2.24
301 302 1.710013 CGTGTCAAGATACGGTTGCT 58.290 50.000 10.90 0.00 41.29 3.91
302 303 2.066262 CGTGTCAAGATACGGTTGCTT 58.934 47.619 10.90 0.00 41.29 3.91
303 304 2.159841 CGTGTCAAGATACGGTTGCTTG 60.160 50.000 10.90 13.33 41.29 4.01
304 305 2.806244 GTGTCAAGATACGGTTGCTTGT 59.194 45.455 16.85 0.00 39.85 3.16
305 306 2.805671 TGTCAAGATACGGTTGCTTGTG 59.194 45.455 16.85 1.07 39.85 3.33
306 307 1.804151 TCAAGATACGGTTGCTTGTGC 59.196 47.619 16.85 0.00 39.85 4.57
322 323 6.207928 TGCTTGTGCATATACAAATACATGC 58.792 36.000 0.00 0.00 45.31 4.06
323 324 6.039605 TGCTTGTGCATATACAAATACATGCT 59.960 34.615 0.00 0.00 45.31 3.79
324 325 6.919662 GCTTGTGCATATACAAATACATGCTT 59.080 34.615 6.91 0.00 43.30 3.91
325 326 8.075574 GCTTGTGCATATACAAATACATGCTTA 58.924 33.333 6.91 0.00 43.30 3.09
327 328 9.896263 TTGTGCATATACAAATACATGCTTATG 57.104 29.630 6.91 0.00 43.30 1.90
328 329 9.065798 TGTGCATATACAAATACATGCTTATGT 57.934 29.630 6.91 0.00 43.30 2.29
336 337 8.560355 ACAAATACATGCTTATGTAGTGTTCA 57.440 30.769 11.01 0.00 39.99 3.18
337 338 8.450964 ACAAATACATGCTTATGTAGTGTTCAC 58.549 33.333 11.01 0.00 39.99 3.18
338 339 8.450180 CAAATACATGCTTATGTAGTGTTCACA 58.550 33.333 5.74 0.00 39.99 3.58
339 340 5.862924 ACATGCTTATGTAGTGTTCACAC 57.137 39.130 1.53 1.53 46.77 3.82
340 341 6.459923 TACATGCTTATGTAGTGTTCACACA 58.540 36.000 12.54 8.83 41.11 3.72
341 342 7.102993 TACATGCTTATGTAGTGTTCACACAT 58.897 34.615 12.54 17.56 41.11 3.21
342 343 7.277760 TACATGCTTATGTAGTGTTCACACATC 59.722 37.037 12.54 5.43 41.11 3.06
352 353 5.682049 GTGTTCACACATCTGTACGATAC 57.318 43.478 5.16 0.00 45.75 2.24
353 354 4.262277 GTGTTCACACATCTGTACGATACG 59.738 45.833 5.16 0.00 45.75 3.06
354 355 3.685836 TCACACATCTGTACGATACGG 57.314 47.619 0.00 0.00 36.38 4.02
355 356 2.117137 CACACATCTGTACGATACGGC 58.883 52.381 0.00 0.00 35.03 5.68
356 357 2.022195 ACACATCTGTACGATACGGCT 58.978 47.619 0.00 0.00 35.03 5.52
357 358 2.223502 ACACATCTGTACGATACGGCTG 60.224 50.000 0.00 0.00 37.25 4.85
358 359 2.032924 CACATCTGTACGATACGGCTGA 59.967 50.000 0.00 0.00 35.37 4.26
359 360 2.290916 ACATCTGTACGATACGGCTGAG 59.709 50.000 0.00 0.00 35.37 3.35
360 361 0.661552 TCTGTACGATACGGCTGAGC 59.338 55.000 0.00 0.00 35.03 4.26
361 362 0.317938 CTGTACGATACGGCTGAGCC 60.318 60.000 14.89 14.89 46.75 4.70
389 390 4.632037 GCAACGTGCATGCAAAGA 57.368 50.000 24.58 0.00 44.26 2.52
390 391 2.427360 GCAACGTGCATGCAAAGAG 58.573 52.632 24.58 16.19 44.26 2.85
391 392 1.005294 GCAACGTGCATGCAAAGAGG 61.005 55.000 24.58 16.42 44.26 3.69
392 393 0.592637 CAACGTGCATGCAAAGAGGA 59.407 50.000 24.58 0.00 0.00 3.71
393 394 0.877071 AACGTGCATGCAAAGAGGAG 59.123 50.000 24.58 10.16 0.00 3.69
394 395 0.957395 ACGTGCATGCAAAGAGGAGG 60.957 55.000 24.58 6.00 0.00 4.30
395 396 0.674581 CGTGCATGCAAAGAGGAGGA 60.675 55.000 24.58 0.00 0.00 3.71
396 397 1.093159 GTGCATGCAAAGAGGAGGAG 58.907 55.000 24.58 0.00 0.00 3.69
397 398 0.034767 TGCATGCAAAGAGGAGGAGG 60.035 55.000 20.30 0.00 0.00 4.30
398 399 0.750911 GCATGCAAAGAGGAGGAGGG 60.751 60.000 14.21 0.00 0.00 4.30
399 400 0.750911 CATGCAAAGAGGAGGAGGGC 60.751 60.000 0.00 0.00 0.00 5.19
400 401 1.931007 ATGCAAAGAGGAGGAGGGCC 61.931 60.000 0.00 0.00 0.00 5.80
401 402 2.606587 GCAAAGAGGAGGAGGGCCA 61.607 63.158 6.18 0.00 36.29 5.36
402 403 1.931007 GCAAAGAGGAGGAGGGCCAT 61.931 60.000 6.18 0.00 36.29 4.40
403 404 0.106819 CAAAGAGGAGGAGGGCCATG 60.107 60.000 6.18 0.00 36.29 3.66
404 405 1.931007 AAAGAGGAGGAGGGCCATGC 61.931 60.000 6.18 1.32 36.29 4.06
414 415 4.927557 GGCCATGCCCATATGTGA 57.072 55.556 0.00 0.00 44.06 3.58
415 416 3.369042 GGCCATGCCCATATGTGAT 57.631 52.632 0.00 0.00 44.06 3.06
416 417 0.892755 GGCCATGCCCATATGTGATG 59.107 55.000 0.00 1.00 44.06 3.07
417 418 0.245539 GCCATGCCCATATGTGATGC 59.754 55.000 1.24 0.00 0.00 3.91
418 419 1.623163 CCATGCCCATATGTGATGCA 58.377 50.000 8.58 8.58 37.33 3.96
419 420 2.176045 CCATGCCCATATGTGATGCAT 58.824 47.619 0.00 0.00 41.32 3.96
420 421 3.230743 CATGCCCATATGTGATGCATG 57.769 47.619 22.53 22.53 45.70 4.06
421 422 0.963225 TGCCCATATGTGATGCATGC 59.037 50.000 11.82 11.82 38.47 4.06
422 423 0.245539 GCCCATATGTGATGCATGCC 59.754 55.000 16.68 0.28 38.47 4.40
423 424 1.623163 CCCATATGTGATGCATGCCA 58.377 50.000 16.68 5.98 38.47 4.92
424 425 1.271379 CCCATATGTGATGCATGCCAC 59.729 52.381 16.68 17.01 38.47 5.01
425 426 1.957877 CCATATGTGATGCATGCCACA 59.042 47.619 25.46 25.46 45.85 4.17
426 427 2.287970 CCATATGTGATGCATGCCACAC 60.288 50.000 25.69 26.11 44.79 3.82
427 428 1.015868 TATGTGATGCATGCCACACG 58.984 50.000 25.69 0.00 44.79 4.49
428 429 0.677414 ATGTGATGCATGCCACACGA 60.677 50.000 25.69 18.86 44.79 4.35
429 430 1.300266 TGTGATGCATGCCACACGAG 61.300 55.000 26.91 0.00 38.26 4.18
430 431 2.400962 TGATGCATGCCACACGAGC 61.401 57.895 16.68 0.00 0.00 5.03
431 432 2.360225 ATGCATGCCACACGAGCA 60.360 55.556 16.68 0.00 45.94 4.26
436 437 4.720127 TGCCACACGAGCATGAAT 57.280 50.000 0.00 0.00 34.69 2.57
437 438 2.173433 TGCCACACGAGCATGAATG 58.827 52.632 0.00 0.00 34.69 2.67
453 454 1.340088 AATGCAATTCAGCCCACACA 58.660 45.000 0.00 0.00 0.00 3.72
454 455 0.604578 ATGCAATTCAGCCCACACAC 59.395 50.000 0.00 0.00 0.00 3.82
455 456 0.754587 TGCAATTCAGCCCACACACA 60.755 50.000 0.00 0.00 0.00 3.72
456 457 0.318955 GCAATTCAGCCCACACACAC 60.319 55.000 0.00 0.00 0.00 3.82
457 458 1.031235 CAATTCAGCCCACACACACA 58.969 50.000 0.00 0.00 0.00 3.72
458 459 1.032014 AATTCAGCCCACACACACAC 58.968 50.000 0.00 0.00 0.00 3.82
459 460 0.106769 ATTCAGCCCACACACACACA 60.107 50.000 0.00 0.00 0.00 3.72
460 461 0.106769 TTCAGCCCACACACACACAT 60.107 50.000 0.00 0.00 0.00 3.21
461 462 0.818852 TCAGCCCACACACACACATG 60.819 55.000 0.00 0.00 0.00 3.21
462 463 1.529010 AGCCCACACACACACATGG 60.529 57.895 0.00 0.00 0.00 3.66
463 464 3.762293 CCCACACACACACATGGG 58.238 61.111 0.00 0.00 45.79 4.00
464 465 2.563798 CCCACACACACACATGGGC 61.564 63.158 0.00 0.00 45.26 5.36
465 466 1.529010 CCACACACACACATGGGCT 60.529 57.895 0.00 0.00 29.20 5.19
466 467 1.108727 CCACACACACACATGGGCTT 61.109 55.000 0.00 0.00 29.20 4.35
467 468 0.031043 CACACACACACATGGGCTTG 59.969 55.000 0.00 0.00 29.20 4.01
468 469 0.106769 ACACACACACATGGGCTTGA 60.107 50.000 0.00 0.00 29.20 3.02
469 470 0.594602 CACACACACATGGGCTTGAG 59.405 55.000 0.00 0.00 29.20 3.02
470 471 0.183492 ACACACACATGGGCTTGAGT 59.817 50.000 0.00 0.00 29.20 3.41
471 472 0.594602 CACACACATGGGCTTGAGTG 59.405 55.000 13.59 13.59 41.93 3.51
472 473 0.538057 ACACACATGGGCTTGAGTGG 60.538 55.000 17.27 5.69 40.94 4.00
473 474 1.075482 ACACATGGGCTTGAGTGGG 59.925 57.895 0.00 0.00 36.35 4.61
474 475 2.036256 ACATGGGCTTGAGTGGGC 59.964 61.111 0.00 0.00 0.00 5.36
479 480 4.643387 GGCTTGAGTGGGCCACGT 62.643 66.667 29.76 18.57 46.84 4.49
480 481 3.357079 GCTTGAGTGGGCCACGTG 61.357 66.667 29.76 20.64 39.64 4.49
481 482 2.425592 CTTGAGTGGGCCACGTGA 59.574 61.111 29.76 18.01 39.64 4.35
482 483 1.669115 CTTGAGTGGGCCACGTGAG 60.669 63.158 29.76 22.72 39.64 3.51
483 484 3.825160 TTGAGTGGGCCACGTGAGC 62.825 63.158 29.76 18.18 39.64 4.26
497 498 4.802051 GAGCGCCCCAGCATCCAA 62.802 66.667 2.29 0.00 39.83 3.53
498 499 4.809496 AGCGCCCCAGCATCCAAG 62.809 66.667 2.29 0.00 39.83 3.61
501 502 2.681064 GCCCCAGCATCCAAGCAA 60.681 61.111 0.00 0.00 39.53 3.91
502 503 3.010413 GCCCCAGCATCCAAGCAAC 62.010 63.158 0.00 0.00 39.53 4.17
503 504 2.703798 CCCCAGCATCCAAGCAACG 61.704 63.158 0.00 0.00 36.85 4.10
504 505 2.180017 CCAGCATCCAAGCAACGC 59.820 61.111 0.00 0.00 36.85 4.84
505 506 2.180017 CAGCATCCAAGCAACGCC 59.820 61.111 0.00 0.00 36.85 5.68
506 507 3.064324 AGCATCCAAGCAACGCCC 61.064 61.111 0.00 0.00 36.85 6.13
507 508 4.133796 GCATCCAAGCAACGCCCC 62.134 66.667 0.00 0.00 0.00 5.80
508 509 2.676121 CATCCAAGCAACGCCCCA 60.676 61.111 0.00 0.00 0.00 4.96
509 510 2.361610 ATCCAAGCAACGCCCCAG 60.362 61.111 0.00 0.00 0.00 4.45
521 522 4.431131 CCCCAGCGCCACAGGATT 62.431 66.667 2.29 0.00 0.00 3.01
522 523 2.825836 CCCAGCGCCACAGGATTC 60.826 66.667 2.29 0.00 0.00 2.52
523 524 2.270205 CCAGCGCCACAGGATTCT 59.730 61.111 2.29 0.00 0.00 2.40
524 525 1.817099 CCAGCGCCACAGGATTCTC 60.817 63.158 2.29 0.00 0.00 2.87
525 526 1.817099 CAGCGCCACAGGATTCTCC 60.817 63.158 2.29 0.00 36.58 3.71
526 527 2.892425 GCGCCACAGGATTCTCCG 60.892 66.667 0.00 0.00 42.75 4.63
527 528 2.579201 CGCCACAGGATTCTCCGT 59.421 61.111 0.00 0.00 42.75 4.69
528 529 1.519455 CGCCACAGGATTCTCCGTC 60.519 63.158 0.00 0.00 42.75 4.79
529 530 1.153349 GCCACAGGATTCTCCGTCC 60.153 63.158 0.00 0.00 42.75 4.79
530 531 1.617947 GCCACAGGATTCTCCGTCCT 61.618 60.000 0.00 0.00 46.92 3.85
534 535 2.903404 AGGATTCTCCGTCCTGTCC 58.097 57.895 0.00 0.00 44.30 4.02
535 536 0.041238 AGGATTCTCCGTCCTGTCCA 59.959 55.000 0.00 0.00 44.30 4.02
536 537 1.123928 GGATTCTCCGTCCTGTCCAT 58.876 55.000 0.00 0.00 32.85 3.41
537 538 1.202580 GGATTCTCCGTCCTGTCCATG 60.203 57.143 0.00 0.00 32.85 3.66
538 539 0.179000 ATTCTCCGTCCTGTCCATGC 59.821 55.000 0.00 0.00 0.00 4.06
539 540 1.899437 TTCTCCGTCCTGTCCATGCC 61.899 60.000 0.00 0.00 0.00 4.40
540 541 3.391665 CTCCGTCCTGTCCATGCCC 62.392 68.421 0.00 0.00 0.00 5.36
541 542 4.838152 CCGTCCTGTCCATGCCCG 62.838 72.222 0.00 0.00 0.00 6.13
543 544 4.408821 GTCCTGTCCATGCCCGCA 62.409 66.667 0.00 0.00 0.00 5.69
544 545 3.645660 TCCTGTCCATGCCCGCAA 61.646 61.111 0.00 0.00 0.00 4.85
545 546 3.443045 CCTGTCCATGCCCGCAAC 61.443 66.667 0.00 0.00 0.00 4.17
546 547 2.360350 CTGTCCATGCCCGCAACT 60.360 61.111 0.00 0.00 0.00 3.16
547 548 2.359850 TGTCCATGCCCGCAACTC 60.360 61.111 0.00 0.00 0.00 3.01
548 549 2.359850 GTCCATGCCCGCAACTCA 60.360 61.111 0.00 0.00 0.00 3.41
549 550 1.971167 GTCCATGCCCGCAACTCAA 60.971 57.895 0.00 0.00 0.00 3.02
550 551 1.971167 TCCATGCCCGCAACTCAAC 60.971 57.895 0.00 0.00 0.00 3.18
551 552 2.568090 CATGCCCGCAACTCAACC 59.432 61.111 0.00 0.00 0.00 3.77
552 553 1.973281 CATGCCCGCAACTCAACCT 60.973 57.895 0.00 0.00 0.00 3.50
553 554 1.675641 ATGCCCGCAACTCAACCTC 60.676 57.895 0.00 0.00 0.00 3.85
554 555 3.423154 GCCCGCAACTCAACCTCG 61.423 66.667 0.00 0.00 0.00 4.63
555 556 2.030562 CCCGCAACTCAACCTCGT 59.969 61.111 0.00 0.00 0.00 4.18
556 557 1.290955 CCCGCAACTCAACCTCGTA 59.709 57.895 0.00 0.00 0.00 3.43
557 558 1.012486 CCCGCAACTCAACCTCGTAC 61.012 60.000 0.00 0.00 0.00 3.67
558 559 0.038526 CCGCAACTCAACCTCGTACT 60.039 55.000 0.00 0.00 0.00 2.73
559 560 1.060713 CGCAACTCAACCTCGTACTG 58.939 55.000 0.00 0.00 0.00 2.74
560 561 1.602165 CGCAACTCAACCTCGTACTGT 60.602 52.381 0.00 0.00 0.00 3.55
561 562 2.059541 GCAACTCAACCTCGTACTGTC 58.940 52.381 0.00 0.00 0.00 3.51
562 563 2.288273 GCAACTCAACCTCGTACTGTCT 60.288 50.000 0.00 0.00 0.00 3.41
563 564 3.057736 GCAACTCAACCTCGTACTGTCTA 60.058 47.826 0.00 0.00 0.00 2.59
564 565 4.724303 CAACTCAACCTCGTACTGTCTAG 58.276 47.826 0.00 0.00 0.00 2.43
565 566 3.345414 ACTCAACCTCGTACTGTCTAGG 58.655 50.000 0.00 0.00 35.14 3.02
566 567 3.244840 ACTCAACCTCGTACTGTCTAGGT 60.245 47.826 3.54 3.54 44.24 3.08
567 568 4.019860 ACTCAACCTCGTACTGTCTAGGTA 60.020 45.833 8.52 0.00 41.51 3.08
568 569 5.108187 TCAACCTCGTACTGTCTAGGTAT 57.892 43.478 8.52 0.00 41.51 2.73
569 570 6.126940 ACTCAACCTCGTACTGTCTAGGTATA 60.127 42.308 8.52 1.69 41.51 1.47
570 571 6.286758 TCAACCTCGTACTGTCTAGGTATAG 58.713 44.000 8.52 4.12 41.51 1.31
571 572 5.226194 ACCTCGTACTGTCTAGGTATAGG 57.774 47.826 6.81 0.00 40.57 2.57
572 573 4.041444 ACCTCGTACTGTCTAGGTATAGGG 59.959 50.000 6.81 0.00 40.57 3.53
573 574 4.041444 CCTCGTACTGTCTAGGTATAGGGT 59.959 50.000 0.00 0.00 0.00 4.34
574 575 5.455899 CCTCGTACTGTCTAGGTATAGGGTT 60.456 48.000 0.00 0.00 0.00 4.11
575 576 6.239714 CCTCGTACTGTCTAGGTATAGGGTTA 60.240 46.154 0.00 0.00 0.00 2.85
576 577 6.763355 TCGTACTGTCTAGGTATAGGGTTAG 58.237 44.000 0.00 0.00 0.00 2.34
577 578 5.411053 CGTACTGTCTAGGTATAGGGTTAGC 59.589 48.000 0.00 0.00 0.00 3.09
578 579 5.399052 ACTGTCTAGGTATAGGGTTAGCA 57.601 43.478 0.00 0.00 0.00 3.49
579 580 5.966684 ACTGTCTAGGTATAGGGTTAGCAT 58.033 41.667 0.00 0.00 0.00 3.79
580 581 6.011481 ACTGTCTAGGTATAGGGTTAGCATC 58.989 44.000 0.00 0.00 0.00 3.91
581 582 6.183361 ACTGTCTAGGTATAGGGTTAGCATCT 60.183 42.308 0.00 0.00 0.00 2.90
582 583 6.010850 TGTCTAGGTATAGGGTTAGCATCTG 58.989 44.000 0.00 0.00 0.00 2.90
583 584 5.419471 GTCTAGGTATAGGGTTAGCATCTGG 59.581 48.000 0.00 0.00 0.00 3.86
584 585 3.521727 AGGTATAGGGTTAGCATCTGGG 58.478 50.000 0.00 0.00 0.00 4.45
585 586 2.027100 GGTATAGGGTTAGCATCTGGGC 60.027 54.545 0.00 0.00 0.00 5.36
586 587 1.068121 ATAGGGTTAGCATCTGGGCC 58.932 55.000 0.00 0.00 0.00 5.80
587 588 0.327095 TAGGGTTAGCATCTGGGCCA 60.327 55.000 5.85 5.85 0.00 5.36
588 589 1.152881 GGGTTAGCATCTGGGCCAG 60.153 63.158 28.01 28.01 0.00 4.85
589 590 1.152881 GGTTAGCATCTGGGCCAGG 60.153 63.158 32.23 18.77 31.51 4.45
590 591 1.825622 GTTAGCATCTGGGCCAGGC 60.826 63.158 32.23 27.03 31.51 4.85
601 602 2.885113 GCCAGGCCAACGAAATCC 59.115 61.111 5.01 0.00 0.00 3.01
602 603 1.976474 GCCAGGCCAACGAAATCCA 60.976 57.895 5.01 0.00 0.00 3.41
603 604 1.937546 GCCAGGCCAACGAAATCCAG 61.938 60.000 5.01 0.00 0.00 3.86
604 605 0.609131 CCAGGCCAACGAAATCCAGT 60.609 55.000 5.01 0.00 0.00 4.00
605 606 0.804989 CAGGCCAACGAAATCCAGTC 59.195 55.000 5.01 0.00 0.00 3.51
606 607 0.693049 AGGCCAACGAAATCCAGTCT 59.307 50.000 5.01 0.00 0.00 3.24
607 608 0.804989 GGCCAACGAAATCCAGTCTG 59.195 55.000 0.00 0.00 0.00 3.51
608 609 0.804989 GCCAACGAAATCCAGTCTGG 59.195 55.000 13.21 13.21 39.43 3.86
609 610 1.882352 GCCAACGAAATCCAGTCTGGT 60.882 52.381 18.65 3.56 39.03 4.00
610 611 2.076863 CCAACGAAATCCAGTCTGGTC 58.923 52.381 18.65 8.23 39.03 4.02
611 612 1.726791 CAACGAAATCCAGTCTGGTCG 59.273 52.381 22.33 22.33 38.85 4.79
612 613 0.389948 ACGAAATCCAGTCTGGTCGC 60.390 55.000 23.35 10.55 37.14 5.19
613 614 0.389817 CGAAATCCAGTCTGGTCGCA 60.390 55.000 18.65 0.00 39.03 5.10
614 615 1.808411 GAAATCCAGTCTGGTCGCAA 58.192 50.000 18.65 0.00 39.03 4.85
615 616 2.151202 GAAATCCAGTCTGGTCGCAAA 58.849 47.619 18.65 0.00 39.03 3.68
616 617 1.813513 AATCCAGTCTGGTCGCAAAG 58.186 50.000 18.65 0.00 39.03 2.77
629 630 3.511699 GTCGCAAAGAAAAATCCATCCC 58.488 45.455 0.00 0.00 0.00 3.85
774 775 3.845259 GGCGCCCCGATGACACTA 61.845 66.667 18.11 0.00 0.00 2.74
1119 1156 0.542333 TGGTCAAAGTTCACACCCGA 59.458 50.000 0.00 0.00 0.00 5.14
1264 1301 4.698304 ACTGGAAACGTTTGACTGAAGAAA 59.302 37.500 20.10 0.00 0.00 2.52
1471 1578 1.744522 TGTACGCGCCATCACTAACTA 59.255 47.619 5.73 0.00 0.00 2.24
1994 2138 5.543507 TTGGTTACACCGGTAAAGAACTA 57.456 39.130 6.87 4.38 42.58 2.24
2244 2388 0.318762 AAGCTGGAACTGTCGAGGTC 59.681 55.000 0.00 0.00 39.13 3.85
2429 2573 1.200519 GTGGCCTGGGTATGTACTGA 58.799 55.000 3.32 0.00 0.00 3.41
2765 2909 5.019470 GGAAATTCCTGGACCTTTGAGAAT 58.981 41.667 4.46 0.00 32.53 2.40
2766 2910 5.481824 GGAAATTCCTGGACCTTTGAGAATT 59.518 40.000 4.46 0.00 35.93 2.17
2879 3023 1.065926 CACCTTGTAGCAGCTGGATCA 60.066 52.381 17.12 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.064946 CGCTCCTCTGATCCGTCAC 59.935 63.158 0.00 0.00 0.00 3.67
4 5 1.377366 GACGCTCCTCTGATCCGTCA 61.377 60.000 11.82 0.00 41.20 4.35
5 6 1.357334 GACGCTCCTCTGATCCGTC 59.643 63.158 3.30 3.30 37.70 4.79
6 7 2.122167 GGACGCTCCTCTGATCCGT 61.122 63.158 0.00 0.00 32.53 4.69
7 8 2.725008 GGACGCTCCTCTGATCCG 59.275 66.667 0.00 0.00 32.53 4.18
8 9 1.668101 AACGGACGCTCCTCTGATCC 61.668 60.000 0.00 0.00 33.30 3.36
9 10 0.248702 GAACGGACGCTCCTCTGATC 60.249 60.000 0.00 0.00 33.30 2.92
10 11 0.681564 AGAACGGACGCTCCTCTGAT 60.682 55.000 0.00 0.00 33.30 2.90
11 12 0.894184 AAGAACGGACGCTCCTCTGA 60.894 55.000 0.00 0.00 33.30 3.27
12 13 0.038159 AAAGAACGGACGCTCCTCTG 60.038 55.000 0.00 0.00 33.30 3.35
13 14 1.542492 TAAAGAACGGACGCTCCTCT 58.458 50.000 0.00 0.00 33.30 3.69
14 15 2.194271 CATAAAGAACGGACGCTCCTC 58.806 52.381 0.00 0.00 33.30 3.71
15 16 1.739371 GCATAAAGAACGGACGCTCCT 60.739 52.381 0.00 0.00 33.30 3.69
16 17 0.651031 GCATAAAGAACGGACGCTCC 59.349 55.000 0.00 0.00 0.00 4.70
17 18 0.651031 GGCATAAAGAACGGACGCTC 59.349 55.000 0.00 0.00 0.00 5.03
18 19 1.082117 CGGCATAAAGAACGGACGCT 61.082 55.000 0.00 0.00 0.00 5.07
19 20 1.347221 CGGCATAAAGAACGGACGC 59.653 57.895 0.00 0.00 0.00 5.19
20 21 1.347221 GCGGCATAAAGAACGGACG 59.653 57.895 0.00 0.00 0.00 4.79
21 22 1.719709 GGCGGCATAAAGAACGGAC 59.280 57.895 3.07 0.00 0.00 4.79
22 23 1.812093 CGGCGGCATAAAGAACGGA 60.812 57.895 10.53 0.00 0.00 4.69
23 24 2.707039 CGGCGGCATAAAGAACGG 59.293 61.111 10.53 0.00 0.00 4.44
24 25 2.707039 CCGGCGGCATAAAGAACG 59.293 61.111 15.42 0.00 0.00 3.95
25 26 1.450669 TCCCGGCGGCATAAAGAAC 60.451 57.895 23.20 0.00 0.00 3.01
26 27 1.450669 GTCCCGGCGGCATAAAGAA 60.451 57.895 23.20 0.00 0.00 2.52
27 28 1.978455 ATGTCCCGGCGGCATAAAGA 61.978 55.000 23.20 8.51 0.00 2.52
28 29 1.101049 AATGTCCCGGCGGCATAAAG 61.101 55.000 23.20 5.74 0.00 1.85
29 30 0.681564 AAATGTCCCGGCGGCATAAA 60.682 50.000 23.20 3.08 0.00 1.40
30 31 0.681564 AAAATGTCCCGGCGGCATAA 60.682 50.000 23.20 5.79 0.00 1.90
31 32 1.077357 AAAATGTCCCGGCGGCATA 60.077 52.632 23.20 3.81 0.00 3.14
32 33 2.362375 AAAATGTCCCGGCGGCAT 60.362 55.556 23.20 17.03 0.00 4.40
33 34 3.369400 CAAAATGTCCCGGCGGCA 61.369 61.111 23.20 15.23 0.00 5.69
34 35 3.370231 ACAAAATGTCCCGGCGGC 61.370 61.111 23.20 8.77 0.00 6.53
35 36 2.566010 CACAAAATGTCCCGGCGG 59.434 61.111 21.46 21.46 0.00 6.13
36 37 1.922135 CTCCACAAAATGTCCCGGCG 61.922 60.000 0.00 0.00 0.00 6.46
37 38 1.595093 CCTCCACAAAATGTCCCGGC 61.595 60.000 0.00 0.00 0.00 6.13
38 39 0.965363 CCCTCCACAAAATGTCCCGG 60.965 60.000 0.00 0.00 0.00 5.73
39 40 0.965363 CCCCTCCACAAAATGTCCCG 60.965 60.000 0.00 0.00 0.00 5.14
40 41 0.614697 CCCCCTCCACAAAATGTCCC 60.615 60.000 0.00 0.00 0.00 4.46
41 42 1.257750 GCCCCCTCCACAAAATGTCC 61.258 60.000 0.00 0.00 0.00 4.02
42 43 0.251787 AGCCCCCTCCACAAAATGTC 60.252 55.000 0.00 0.00 0.00 3.06
43 44 0.190815 AAGCCCCCTCCACAAAATGT 59.809 50.000 0.00 0.00 0.00 2.71
44 45 0.897621 GAAGCCCCCTCCACAAAATG 59.102 55.000 0.00 0.00 0.00 2.32
45 46 0.786435 AGAAGCCCCCTCCACAAAAT 59.214 50.000 0.00 0.00 0.00 1.82
46 47 0.178964 CAGAAGCCCCCTCCACAAAA 60.179 55.000 0.00 0.00 0.00 2.44
47 48 1.460255 CAGAAGCCCCCTCCACAAA 59.540 57.895 0.00 0.00 0.00 2.83
48 49 2.538141 CCAGAAGCCCCCTCCACAA 61.538 63.158 0.00 0.00 0.00 3.33
49 50 2.935481 CCAGAAGCCCCCTCCACA 60.935 66.667 0.00 0.00 0.00 4.17
50 51 4.432741 GCCAGAAGCCCCCTCCAC 62.433 72.222 0.00 0.00 34.35 4.02
59 60 1.673168 CTGTAATCTGGGCCAGAAGC 58.327 55.000 37.86 28.09 44.04 3.86
60 61 1.561542 ACCTGTAATCTGGGCCAGAAG 59.438 52.381 37.86 28.65 44.04 2.85
61 62 1.559682 GACCTGTAATCTGGGCCAGAA 59.440 52.381 37.86 21.69 44.04 3.02
62 63 1.204146 GACCTGTAATCTGGGCCAGA 58.796 55.000 36.61 36.61 44.99 3.86
63 64 3.788672 GACCTGTAATCTGGGCCAG 57.211 57.895 28.01 28.01 35.04 4.85
66 67 1.146263 CGGGACCTGTAATCTGGGC 59.854 63.158 0.00 0.00 39.58 5.36
67 68 0.753262 CTCGGGACCTGTAATCTGGG 59.247 60.000 0.00 0.00 37.05 4.45
68 69 0.753262 CCTCGGGACCTGTAATCTGG 59.247 60.000 0.00 0.00 38.41 3.86
69 70 1.683917 CTCCTCGGGACCTGTAATCTG 59.316 57.143 0.00 0.00 0.00 2.90
70 71 1.411787 CCTCCTCGGGACCTGTAATCT 60.412 57.143 0.00 0.00 0.00 2.40
71 72 1.041437 CCTCCTCGGGACCTGTAATC 58.959 60.000 0.00 0.00 0.00 1.75
72 73 0.338814 ACCTCCTCGGGACCTGTAAT 59.661 55.000 0.00 0.00 36.97 1.89
73 74 0.115745 AACCTCCTCGGGACCTGTAA 59.884 55.000 0.00 0.00 36.97 2.41
74 75 1.002069 TAACCTCCTCGGGACCTGTA 58.998 55.000 0.00 0.00 36.97 2.74
75 76 0.338814 ATAACCTCCTCGGGACCTGT 59.661 55.000 0.00 0.00 36.97 4.00
76 77 1.041437 GATAACCTCCTCGGGACCTG 58.959 60.000 0.00 0.00 36.97 4.00
77 78 0.467659 CGATAACCTCCTCGGGACCT 60.468 60.000 0.00 0.00 36.97 3.85
78 79 2.039509 CGATAACCTCCTCGGGACC 58.960 63.158 0.00 0.00 36.97 4.46
83 84 1.400530 AAGCCCCGATAACCTCCTCG 61.401 60.000 0.00 0.00 34.73 4.63
84 85 0.837940 AAAGCCCCGATAACCTCCTC 59.162 55.000 0.00 0.00 0.00 3.71
85 86 0.837940 GAAAGCCCCGATAACCTCCT 59.162 55.000 0.00 0.00 0.00 3.69
86 87 0.532196 CGAAAGCCCCGATAACCTCC 60.532 60.000 0.00 0.00 0.00 4.30
87 88 0.177373 ACGAAAGCCCCGATAACCTC 59.823 55.000 0.00 0.00 0.00 3.85
88 89 0.107848 CACGAAAGCCCCGATAACCT 60.108 55.000 0.00 0.00 0.00 3.50
89 90 1.093496 CCACGAAAGCCCCGATAACC 61.093 60.000 0.00 0.00 0.00 2.85
90 91 0.392060 ACCACGAAAGCCCCGATAAC 60.392 55.000 0.00 0.00 0.00 1.89
91 92 0.391927 CACCACGAAAGCCCCGATAA 60.392 55.000 0.00 0.00 0.00 1.75
92 93 1.219664 CACCACGAAAGCCCCGATA 59.780 57.895 0.00 0.00 0.00 2.92
93 94 2.046314 CACCACGAAAGCCCCGAT 60.046 61.111 0.00 0.00 0.00 4.18
94 95 4.323477 CCACCACGAAAGCCCCGA 62.323 66.667 0.00 0.00 0.00 5.14
95 96 3.242897 TACCACCACGAAAGCCCCG 62.243 63.158 0.00 0.00 0.00 5.73
96 97 1.673337 GTACCACCACGAAAGCCCC 60.673 63.158 0.00 0.00 0.00 5.80
97 98 0.322187 ATGTACCACCACGAAAGCCC 60.322 55.000 0.00 0.00 0.00 5.19
98 99 0.802494 CATGTACCACCACGAAAGCC 59.198 55.000 0.00 0.00 0.00 4.35
99 100 1.803334 TCATGTACCACCACGAAAGC 58.197 50.000 0.00 0.00 0.00 3.51
100 101 3.125146 CACATCATGTACCACCACGAAAG 59.875 47.826 0.00 0.00 0.00 2.62
101 102 3.070748 CACATCATGTACCACCACGAAA 58.929 45.455 0.00 0.00 0.00 3.46
102 103 2.614229 CCACATCATGTACCACCACGAA 60.614 50.000 0.00 0.00 0.00 3.85
103 104 1.066502 CCACATCATGTACCACCACGA 60.067 52.381 0.00 0.00 0.00 4.35
104 105 1.066502 TCCACATCATGTACCACCACG 60.067 52.381 0.00 0.00 0.00 4.94
105 106 2.290008 TGTCCACATCATGTACCACCAC 60.290 50.000 0.00 0.00 0.00 4.16
106 107 1.981495 TGTCCACATCATGTACCACCA 59.019 47.619 0.00 0.00 0.00 4.17
107 108 2.779755 TGTCCACATCATGTACCACC 57.220 50.000 0.00 0.00 0.00 4.61
108 109 3.809832 GCTATGTCCACATCATGTACCAC 59.190 47.826 0.00 0.00 37.76 4.16
109 110 3.711190 AGCTATGTCCACATCATGTACCA 59.289 43.478 0.00 0.00 37.76 3.25
110 111 4.342862 AGCTATGTCCACATCATGTACC 57.657 45.455 0.00 0.00 37.76 3.34
111 112 5.011125 AGGTAGCTATGTCCACATCATGTAC 59.989 44.000 0.00 0.00 37.76 2.90
112 113 5.147767 AGGTAGCTATGTCCACATCATGTA 58.852 41.667 0.00 0.00 37.76 2.29
113 114 3.969976 AGGTAGCTATGTCCACATCATGT 59.030 43.478 0.00 0.00 37.76 3.21
114 115 4.039609 TGAGGTAGCTATGTCCACATCATG 59.960 45.833 0.00 0.00 37.76 3.07
115 116 4.226384 TGAGGTAGCTATGTCCACATCAT 58.774 43.478 0.00 0.00 37.76 2.45
129 130 0.750850 TTGGCCGTATCTGAGGTAGC 59.249 55.000 0.00 0.00 0.00 3.58
242 243 8.902806 TCTTCGTTAATCCTGCATGAAATAAAT 58.097 29.630 0.00 0.00 0.00 1.40
243 244 8.275015 TCTTCGTTAATCCTGCATGAAATAAA 57.725 30.769 0.00 0.00 0.00 1.40
244 245 7.857734 TCTTCGTTAATCCTGCATGAAATAA 57.142 32.000 0.00 0.00 0.00 1.40
245 246 8.450578 AATCTTCGTTAATCCTGCATGAAATA 57.549 30.769 0.00 0.00 0.00 1.40
246 247 6.949352 ATCTTCGTTAATCCTGCATGAAAT 57.051 33.333 0.00 0.00 0.00 2.17
247 248 6.757897 AATCTTCGTTAATCCTGCATGAAA 57.242 33.333 0.00 0.00 0.00 2.69
248 249 6.757897 AAATCTTCGTTAATCCTGCATGAA 57.242 33.333 0.00 0.00 0.00 2.57
249 250 8.450578 AATAAATCTTCGTTAATCCTGCATGA 57.549 30.769 0.00 0.00 0.00 3.07
250 251 8.344831 TGAATAAATCTTCGTTAATCCTGCATG 58.655 33.333 0.00 0.00 0.00 4.06
251 252 8.450578 TGAATAAATCTTCGTTAATCCTGCAT 57.549 30.769 0.00 0.00 0.00 3.96
252 253 7.857734 TGAATAAATCTTCGTTAATCCTGCA 57.142 32.000 0.00 0.00 0.00 4.41
253 254 9.010366 GTTTGAATAAATCTTCGTTAATCCTGC 57.990 33.333 0.00 0.00 0.00 4.85
254 255 9.503427 GGTTTGAATAAATCTTCGTTAATCCTG 57.497 33.333 0.00 0.00 0.00 3.86
255 256 9.238368 TGGTTTGAATAAATCTTCGTTAATCCT 57.762 29.630 0.00 0.00 0.00 3.24
256 257 9.285770 GTGGTTTGAATAAATCTTCGTTAATCC 57.714 33.333 0.00 0.00 0.00 3.01
257 258 8.995906 CGTGGTTTGAATAAATCTTCGTTAATC 58.004 33.333 0.00 0.00 0.00 1.75
258 259 8.508875 ACGTGGTTTGAATAAATCTTCGTTAAT 58.491 29.630 0.00 0.00 36.03 1.40
259 260 7.799447 CACGTGGTTTGAATAAATCTTCGTTAA 59.201 33.333 7.95 0.00 36.70 2.01
260 261 7.041916 ACACGTGGTTTGAATAAATCTTCGTTA 60.042 33.333 21.57 0.00 36.70 3.18
261 262 6.140110 CACGTGGTTTGAATAAATCTTCGTT 58.860 36.000 7.95 0.00 36.70 3.85
262 263 5.237779 ACACGTGGTTTGAATAAATCTTCGT 59.762 36.000 21.57 0.00 38.02 3.85
263 264 5.685841 ACACGTGGTTTGAATAAATCTTCG 58.314 37.500 21.57 0.00 34.17 3.79
264 265 6.664515 TGACACGTGGTTTGAATAAATCTTC 58.335 36.000 21.57 2.62 0.00 2.87
265 266 6.627395 TGACACGTGGTTTGAATAAATCTT 57.373 33.333 21.57 0.00 0.00 2.40
266 267 6.485313 TCTTGACACGTGGTTTGAATAAATCT 59.515 34.615 21.57 0.00 0.00 2.40
267 268 6.664515 TCTTGACACGTGGTTTGAATAAATC 58.335 36.000 21.57 3.97 0.00 2.17
268 269 6.627395 TCTTGACACGTGGTTTGAATAAAT 57.373 33.333 21.57 0.00 0.00 1.40
269 270 6.627395 ATCTTGACACGTGGTTTGAATAAA 57.373 33.333 21.57 0.00 0.00 1.40
270 271 6.128769 CGTATCTTGACACGTGGTTTGAATAA 60.129 38.462 21.57 2.21 0.00 1.40
271 272 5.346551 CGTATCTTGACACGTGGTTTGAATA 59.653 40.000 21.57 7.50 0.00 1.75
272 273 4.151689 CGTATCTTGACACGTGGTTTGAAT 59.848 41.667 21.57 8.47 0.00 2.57
273 274 3.491639 CGTATCTTGACACGTGGTTTGAA 59.508 43.478 21.57 0.00 0.00 2.69
274 275 3.054166 CGTATCTTGACACGTGGTTTGA 58.946 45.455 21.57 12.68 0.00 2.69
275 276 2.156891 CCGTATCTTGACACGTGGTTTG 59.843 50.000 21.57 7.49 0.00 2.93
276 277 2.224113 ACCGTATCTTGACACGTGGTTT 60.224 45.455 21.57 0.00 0.00 3.27
277 278 1.342174 ACCGTATCTTGACACGTGGTT 59.658 47.619 21.57 0.00 0.00 3.67
278 279 0.963962 ACCGTATCTTGACACGTGGT 59.036 50.000 21.57 5.35 0.00 4.16
279 280 1.724623 CAACCGTATCTTGACACGTGG 59.275 52.381 21.57 1.33 0.00 4.94
280 281 1.126113 GCAACCGTATCTTGACACGTG 59.874 52.381 15.48 15.48 0.00 4.49
281 282 1.000506 AGCAACCGTATCTTGACACGT 59.999 47.619 0.86 0.00 0.00 4.49
282 283 1.710013 AGCAACCGTATCTTGACACG 58.290 50.000 0.00 0.00 0.00 4.49
283 284 2.806244 ACAAGCAACCGTATCTTGACAC 59.194 45.455 15.56 0.00 39.48 3.67
284 285 2.805671 CACAAGCAACCGTATCTTGACA 59.194 45.455 15.56 0.00 39.48 3.58
285 286 2.412847 GCACAAGCAACCGTATCTTGAC 60.413 50.000 15.56 6.99 39.48 3.18
286 287 1.804151 GCACAAGCAACCGTATCTTGA 59.196 47.619 15.56 0.00 39.48 3.02
287 288 2.247311 GCACAAGCAACCGTATCTTG 57.753 50.000 9.78 9.78 41.99 3.02
299 300 6.441274 AGCATGTATTTGTATATGCACAAGC 58.559 36.000 16.02 0.00 43.93 4.01
301 302 9.896263 CATAAGCATGTATTTGTATATGCACAA 57.104 29.630 16.02 0.00 43.93 3.33
302 303 9.065798 ACATAAGCATGTATTTGTATATGCACA 57.934 29.630 16.02 6.57 43.74 4.57
310 311 9.660180 TGAACACTACATAAGCATGTATTTGTA 57.340 29.630 9.93 0.00 44.65 2.41
311 312 8.450964 GTGAACACTACATAAGCATGTATTTGT 58.549 33.333 0.00 2.77 44.65 2.83
312 313 8.450180 TGTGAACACTACATAAGCATGTATTTG 58.550 33.333 6.51 2.26 44.65 2.32
313 314 8.450964 GTGTGAACACTACATAAGCATGTATTT 58.549 33.333 6.33 0.00 44.65 1.40
314 315 7.606073 TGTGTGAACACTACATAAGCATGTATT 59.394 33.333 14.28 0.00 44.65 1.89
315 316 7.102993 TGTGTGAACACTACATAAGCATGTAT 58.897 34.615 14.28 0.00 44.65 2.29
316 317 6.459923 TGTGTGAACACTACATAAGCATGTA 58.540 36.000 14.28 0.00 43.99 2.29
317 318 5.304778 TGTGTGAACACTACATAAGCATGT 58.695 37.500 14.28 0.00 46.55 3.21
318 319 5.861222 TGTGTGAACACTACATAAGCATG 57.139 39.130 14.28 0.00 46.55 4.06
319 320 6.314648 CAGATGTGTGAACACTACATAAGCAT 59.685 38.462 14.28 0.00 46.55 3.79
320 321 5.639082 CAGATGTGTGAACACTACATAAGCA 59.361 40.000 14.28 0.00 46.55 3.91
321 322 5.639506 ACAGATGTGTGAACACTACATAAGC 59.360 40.000 14.28 0.00 46.55 3.09
322 323 7.008357 CGTACAGATGTGTGAACACTACATAAG 59.992 40.741 14.28 14.59 46.55 1.73
323 324 6.804783 CGTACAGATGTGTGAACACTACATAA 59.195 38.462 14.28 0.00 46.55 1.90
324 325 6.149807 TCGTACAGATGTGTGAACACTACATA 59.850 38.462 14.28 0.00 46.55 2.29
325 326 5.048294 TCGTACAGATGTGTGAACACTACAT 60.048 40.000 14.28 16.39 46.55 2.29
326 327 4.276431 TCGTACAGATGTGTGAACACTACA 59.724 41.667 14.28 10.39 46.55 2.74
327 328 4.790878 TCGTACAGATGTGTGAACACTAC 58.209 43.478 14.28 7.32 46.55 2.73
328 329 5.638596 ATCGTACAGATGTGTGAACACTA 57.361 39.130 14.28 2.29 46.55 2.74
329 330 4.521130 ATCGTACAGATGTGTGAACACT 57.479 40.909 14.28 0.85 46.55 3.55
330 331 4.262277 CGTATCGTACAGATGTGTGAACAC 59.738 45.833 5.61 6.63 46.59 3.32
331 332 4.408694 CGTATCGTACAGATGTGTGAACA 58.591 43.478 5.61 0.00 40.40 3.18
332 333 3.789756 CCGTATCGTACAGATGTGTGAAC 59.210 47.826 5.61 0.00 40.40 3.18
333 334 3.732774 GCCGTATCGTACAGATGTGTGAA 60.733 47.826 5.61 0.00 40.40 3.18
334 335 2.223409 GCCGTATCGTACAGATGTGTGA 60.223 50.000 5.61 0.00 40.40 3.58
335 336 2.117137 GCCGTATCGTACAGATGTGTG 58.883 52.381 5.61 0.00 40.40 3.82
336 337 2.022195 AGCCGTATCGTACAGATGTGT 58.978 47.619 0.00 0.00 40.40 3.72
337 338 2.032924 TCAGCCGTATCGTACAGATGTG 59.967 50.000 9.52 0.00 40.40 3.21
338 339 2.290916 CTCAGCCGTATCGTACAGATGT 59.709 50.000 9.52 0.00 40.40 3.06
339 340 2.918549 GCTCAGCCGTATCGTACAGATG 60.919 54.545 9.52 0.00 40.40 2.90
340 341 1.267261 GCTCAGCCGTATCGTACAGAT 59.733 52.381 0.00 0.00 43.19 2.90
341 342 0.661552 GCTCAGCCGTATCGTACAGA 59.338 55.000 0.00 0.00 0.00 3.41
342 343 0.317938 GGCTCAGCCGTATCGTACAG 60.318 60.000 0.00 0.00 39.62 2.74
343 344 1.731700 GGCTCAGCCGTATCGTACA 59.268 57.895 0.00 0.00 39.62 2.90
344 345 4.630097 GGCTCAGCCGTATCGTAC 57.370 61.111 0.00 0.00 39.62 3.67
372 373 1.005294 CCTCTTTGCATGCACGTTGC 61.005 55.000 22.58 3.77 45.29 4.17
373 374 0.592637 TCCTCTTTGCATGCACGTTG 59.407 50.000 22.58 11.18 0.00 4.10
374 375 0.877071 CTCCTCTTTGCATGCACGTT 59.123 50.000 22.58 0.00 0.00 3.99
375 376 0.957395 CCTCCTCTTTGCATGCACGT 60.957 55.000 22.58 0.00 0.00 4.49
376 377 0.674581 TCCTCCTCTTTGCATGCACG 60.675 55.000 22.58 14.84 0.00 5.34
377 378 1.093159 CTCCTCCTCTTTGCATGCAC 58.907 55.000 22.58 0.00 0.00 4.57
378 379 0.034767 CCTCCTCCTCTTTGCATGCA 60.035 55.000 18.46 18.46 0.00 3.96
379 380 0.750911 CCCTCCTCCTCTTTGCATGC 60.751 60.000 11.82 11.82 0.00 4.06
380 381 0.750911 GCCCTCCTCCTCTTTGCATG 60.751 60.000 0.00 0.00 0.00 4.06
381 382 1.611965 GCCCTCCTCCTCTTTGCAT 59.388 57.895 0.00 0.00 0.00 3.96
382 383 2.606587 GGCCCTCCTCCTCTTTGCA 61.607 63.158 0.00 0.00 0.00 4.08
383 384 1.931007 ATGGCCCTCCTCCTCTTTGC 61.931 60.000 0.00 0.00 0.00 3.68
384 385 0.106819 CATGGCCCTCCTCCTCTTTG 60.107 60.000 0.00 0.00 0.00 2.77
385 386 1.931007 GCATGGCCCTCCTCCTCTTT 61.931 60.000 0.00 0.00 0.00 2.52
386 387 2.381941 GCATGGCCCTCCTCCTCTT 61.382 63.158 0.00 0.00 0.00 2.85
387 388 2.771762 GCATGGCCCTCCTCCTCT 60.772 66.667 0.00 0.00 0.00 3.69
388 389 3.883549 GGCATGGCCCTCCTCCTC 61.884 72.222 8.35 0.00 44.06 3.71
398 399 0.245539 GCATCACATATGGGCATGGC 59.754 55.000 11.56 11.56 0.00 4.40
399 400 1.623163 TGCATCACATATGGGCATGG 58.377 50.000 7.80 0.00 33.44 3.66
401 402 1.548719 GCATGCATCACATATGGGCAT 59.451 47.619 14.21 15.97 43.53 4.40
402 403 0.963225 GCATGCATCACATATGGGCA 59.037 50.000 14.21 11.25 36.64 5.36
403 404 0.245539 GGCATGCATCACATATGGGC 59.754 55.000 21.36 5.89 36.64 5.36
404 405 1.271379 GTGGCATGCATCACATATGGG 59.729 52.381 21.36 2.34 36.64 4.00
405 406 1.957877 TGTGGCATGCATCACATATGG 59.042 47.619 21.34 0.00 38.75 2.74
406 407 2.603652 CGTGTGGCATGCATCACATATG 60.604 50.000 29.69 20.11 44.32 1.78
407 408 1.605232 CGTGTGGCATGCATCACATAT 59.395 47.619 29.69 0.00 44.32 1.78
408 409 1.015868 CGTGTGGCATGCATCACATA 58.984 50.000 29.69 13.75 44.32 2.29
409 410 0.677414 TCGTGTGGCATGCATCACAT 60.677 50.000 29.69 0.00 44.32 3.21
410 411 1.300266 CTCGTGTGGCATGCATCACA 61.300 55.000 29.69 26.05 41.01 3.58
411 412 1.426621 CTCGTGTGGCATGCATCAC 59.573 57.895 24.71 24.71 34.71 3.06
412 413 2.400962 GCTCGTGTGGCATGCATCA 61.401 57.895 21.36 14.62 0.00 3.07
413 414 1.721664 ATGCTCGTGTGGCATGCATC 61.722 55.000 21.36 12.03 46.85 3.91
414 415 1.751544 ATGCTCGTGTGGCATGCAT 60.752 52.632 21.36 0.00 46.85 3.96
415 416 2.360225 ATGCTCGTGTGGCATGCA 60.360 55.556 21.36 2.54 46.85 3.96
419 420 2.173433 CATTCATGCTCGTGTGGCA 58.827 52.632 0.00 0.00 44.05 4.92
432 433 1.273048 GTGTGGGCTGAATTGCATTCA 59.727 47.619 10.01 10.01 46.30 2.57
433 434 1.273048 TGTGTGGGCTGAATTGCATTC 59.727 47.619 0.00 0.00 39.70 2.67
434 435 1.001181 GTGTGTGGGCTGAATTGCATT 59.999 47.619 0.00 0.00 34.04 3.56
435 436 0.604578 GTGTGTGGGCTGAATTGCAT 59.395 50.000 0.00 0.00 34.04 3.96
436 437 0.754587 TGTGTGTGGGCTGAATTGCA 60.755 50.000 0.00 0.00 34.04 4.08
437 438 0.318955 GTGTGTGTGGGCTGAATTGC 60.319 55.000 0.00 0.00 0.00 3.56
438 439 1.031235 TGTGTGTGTGGGCTGAATTG 58.969 50.000 0.00 0.00 0.00 2.32
439 440 1.032014 GTGTGTGTGTGGGCTGAATT 58.968 50.000 0.00 0.00 0.00 2.17
440 441 0.106769 TGTGTGTGTGTGGGCTGAAT 60.107 50.000 0.00 0.00 0.00 2.57
441 442 0.106769 ATGTGTGTGTGTGGGCTGAA 60.107 50.000 0.00 0.00 0.00 3.02
442 443 0.818852 CATGTGTGTGTGTGGGCTGA 60.819 55.000 0.00 0.00 0.00 4.26
443 444 1.655885 CATGTGTGTGTGTGGGCTG 59.344 57.895 0.00 0.00 0.00 4.85
444 445 1.529010 CCATGTGTGTGTGTGGGCT 60.529 57.895 0.00 0.00 0.00 5.19
445 446 2.563798 CCCATGTGTGTGTGTGGGC 61.564 63.158 0.00 0.00 44.32 5.36
446 447 3.762293 CCCATGTGTGTGTGTGGG 58.238 61.111 0.00 0.00 44.81 4.61
447 448 1.108727 AAGCCCATGTGTGTGTGTGG 61.109 55.000 0.00 0.00 0.00 4.17
448 449 0.031043 CAAGCCCATGTGTGTGTGTG 59.969 55.000 0.00 0.00 0.00 3.82
449 450 0.106769 TCAAGCCCATGTGTGTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
450 451 0.594602 CTCAAGCCCATGTGTGTGTG 59.405 55.000 0.00 0.00 0.00 3.82
451 452 0.183492 ACTCAAGCCCATGTGTGTGT 59.817 50.000 0.00 0.00 0.00 3.72
452 453 0.594602 CACTCAAGCCCATGTGTGTG 59.405 55.000 8.13 0.00 39.03 3.82
453 454 0.538057 CCACTCAAGCCCATGTGTGT 60.538 55.000 12.84 0.00 41.09 3.72
454 455 1.246056 CCCACTCAAGCCCATGTGTG 61.246 60.000 8.96 8.96 41.89 3.82
455 456 1.075482 CCCACTCAAGCCCATGTGT 59.925 57.895 0.00 0.00 0.00 3.72
456 457 2.345760 GCCCACTCAAGCCCATGTG 61.346 63.158 0.00 0.00 0.00 3.21
457 458 2.036256 GCCCACTCAAGCCCATGT 59.964 61.111 0.00 0.00 0.00 3.21
458 459 2.757099 GGCCCACTCAAGCCCATG 60.757 66.667 0.00 0.00 43.76 3.66
463 464 3.357079 CACGTGGCCCACTCAAGC 61.357 66.667 12.94 0.00 31.34 4.01
464 465 1.669115 CTCACGTGGCCCACTCAAG 60.669 63.158 17.00 2.16 31.34 3.02
465 466 2.425592 CTCACGTGGCCCACTCAA 59.574 61.111 17.00 0.00 31.34 3.02
466 467 4.314440 GCTCACGTGGCCCACTCA 62.314 66.667 17.00 0.00 31.34 3.41
480 481 4.802051 TTGGATGCTGGGGCGCTC 62.802 66.667 7.64 1.18 42.25 5.03
481 482 4.809496 CTTGGATGCTGGGGCGCT 62.809 66.667 7.64 0.00 42.25 5.92
484 485 2.681064 TTGCTTGGATGCTGGGGC 60.681 61.111 0.00 0.00 39.26 5.80
485 486 2.703798 CGTTGCTTGGATGCTGGGG 61.704 63.158 0.00 0.00 0.00 4.96
486 487 2.879907 CGTTGCTTGGATGCTGGG 59.120 61.111 0.00 0.00 0.00 4.45
487 488 2.180017 GCGTTGCTTGGATGCTGG 59.820 61.111 0.00 0.00 0.00 4.85
488 489 2.180017 GGCGTTGCTTGGATGCTG 59.820 61.111 0.00 0.00 0.00 4.41
489 490 3.064324 GGGCGTTGCTTGGATGCT 61.064 61.111 0.00 0.00 0.00 3.79
490 491 4.133796 GGGGCGTTGCTTGGATGC 62.134 66.667 0.00 0.00 0.00 3.91
491 492 2.676121 TGGGGCGTTGCTTGGATG 60.676 61.111 0.00 0.00 0.00 3.51
492 493 2.361610 CTGGGGCGTTGCTTGGAT 60.362 61.111 0.00 0.00 0.00 3.41
504 505 4.431131 AATCCTGTGGCGCTGGGG 62.431 66.667 21.74 10.77 36.89 4.96
505 506 2.825836 GAATCCTGTGGCGCTGGG 60.826 66.667 21.74 13.08 36.89 4.45
506 507 1.817099 GAGAATCCTGTGGCGCTGG 60.817 63.158 16.98 16.98 37.52 4.85
507 508 3.805267 GAGAATCCTGTGGCGCTG 58.195 61.111 7.64 0.00 0.00 5.18
518 519 1.808133 GCATGGACAGGACGGAGAATC 60.808 57.143 0.00 0.00 0.00 2.52
519 520 0.179000 GCATGGACAGGACGGAGAAT 59.821 55.000 0.00 0.00 0.00 2.40
520 521 1.596934 GCATGGACAGGACGGAGAA 59.403 57.895 0.00 0.00 0.00 2.87
521 522 2.359169 GGCATGGACAGGACGGAGA 61.359 63.158 0.00 0.00 0.00 3.71
522 523 2.187946 GGCATGGACAGGACGGAG 59.812 66.667 0.00 0.00 0.00 4.63
523 524 3.399181 GGGCATGGACAGGACGGA 61.399 66.667 0.00 0.00 0.00 4.69
524 525 4.838152 CGGGCATGGACAGGACGG 62.838 72.222 0.00 0.00 0.00 4.79
526 527 3.918253 TTGCGGGCATGGACAGGAC 62.918 63.158 0.00 0.00 0.00 3.85
527 528 3.645660 TTGCGGGCATGGACAGGA 61.646 61.111 0.00 0.00 0.00 3.86
528 529 3.443045 GTTGCGGGCATGGACAGG 61.443 66.667 0.00 0.00 0.00 4.00
529 530 2.360350 AGTTGCGGGCATGGACAG 60.360 61.111 0.00 0.00 0.00 3.51
530 531 2.359850 GAGTTGCGGGCATGGACA 60.360 61.111 0.00 0.00 0.00 4.02
531 532 1.971167 TTGAGTTGCGGGCATGGAC 60.971 57.895 0.00 0.00 0.00 4.02
532 533 1.971167 GTTGAGTTGCGGGCATGGA 60.971 57.895 0.00 0.00 0.00 3.41
533 534 2.568090 GTTGAGTTGCGGGCATGG 59.432 61.111 0.00 0.00 0.00 3.66
534 535 1.926511 GAGGTTGAGTTGCGGGCATG 61.927 60.000 0.00 0.00 0.00 4.06
535 536 1.675641 GAGGTTGAGTTGCGGGCAT 60.676 57.895 0.00 0.00 0.00 4.40
536 537 2.281484 GAGGTTGAGTTGCGGGCA 60.281 61.111 0.00 0.00 0.00 5.36
537 538 2.775032 TACGAGGTTGAGTTGCGGGC 62.775 60.000 0.00 0.00 0.00 6.13
538 539 1.012486 GTACGAGGTTGAGTTGCGGG 61.012 60.000 0.00 0.00 0.00 6.13
539 540 0.038526 AGTACGAGGTTGAGTTGCGG 60.039 55.000 0.00 0.00 0.00 5.69
540 541 1.060713 CAGTACGAGGTTGAGTTGCG 58.939 55.000 0.00 0.00 0.00 4.85
541 542 2.059541 GACAGTACGAGGTTGAGTTGC 58.940 52.381 0.00 0.00 0.00 4.17
542 543 3.644884 AGACAGTACGAGGTTGAGTTG 57.355 47.619 0.00 0.00 0.00 3.16
543 544 3.757493 CCTAGACAGTACGAGGTTGAGTT 59.243 47.826 0.00 0.00 0.00 3.01
544 545 3.244840 ACCTAGACAGTACGAGGTTGAGT 60.245 47.826 0.00 0.00 41.70 3.41
545 546 3.345414 ACCTAGACAGTACGAGGTTGAG 58.655 50.000 0.00 0.00 41.70 3.02
546 547 3.430042 ACCTAGACAGTACGAGGTTGA 57.570 47.619 0.00 0.00 41.70 3.18
547 548 5.469421 CCTATACCTAGACAGTACGAGGTTG 59.531 48.000 0.00 0.00 41.70 3.77
548 549 5.455899 CCCTATACCTAGACAGTACGAGGTT 60.456 48.000 0.00 0.00 41.70 3.50
549 550 4.041444 CCCTATACCTAGACAGTACGAGGT 59.959 50.000 0.00 0.00 45.17 3.85
550 551 4.041444 ACCCTATACCTAGACAGTACGAGG 59.959 50.000 0.00 0.00 38.36 4.63
551 552 5.226194 ACCCTATACCTAGACAGTACGAG 57.774 47.826 0.00 0.00 0.00 4.18
552 553 5.636903 AACCCTATACCTAGACAGTACGA 57.363 43.478 0.00 0.00 0.00 3.43
553 554 5.411053 GCTAACCCTATACCTAGACAGTACG 59.589 48.000 0.00 0.00 0.00 3.67
554 555 6.302269 TGCTAACCCTATACCTAGACAGTAC 58.698 44.000 0.00 0.00 0.00 2.73
555 556 6.520021 TGCTAACCCTATACCTAGACAGTA 57.480 41.667 0.00 0.00 0.00 2.74
556 557 5.399052 TGCTAACCCTATACCTAGACAGT 57.601 43.478 0.00 0.00 0.00 3.55
557 558 6.151985 CAGATGCTAACCCTATACCTAGACAG 59.848 46.154 0.00 0.00 0.00 3.51
558 559 6.010850 CAGATGCTAACCCTATACCTAGACA 58.989 44.000 0.00 0.00 0.00 3.41
559 560 5.419471 CCAGATGCTAACCCTATACCTAGAC 59.581 48.000 0.00 0.00 0.00 2.59
560 561 5.518546 CCCAGATGCTAACCCTATACCTAGA 60.519 48.000 0.00 0.00 0.00 2.43
561 562 4.712337 CCCAGATGCTAACCCTATACCTAG 59.288 50.000 0.00 0.00 0.00 3.02
562 563 4.684724 CCCAGATGCTAACCCTATACCTA 58.315 47.826 0.00 0.00 0.00 3.08
563 564 3.521727 CCCAGATGCTAACCCTATACCT 58.478 50.000 0.00 0.00 0.00 3.08
564 565 2.027100 GCCCAGATGCTAACCCTATACC 60.027 54.545 0.00 0.00 0.00 2.73
565 566 2.027100 GGCCCAGATGCTAACCCTATAC 60.027 54.545 0.00 0.00 0.00 1.47
566 567 2.266279 GGCCCAGATGCTAACCCTATA 58.734 52.381 0.00 0.00 0.00 1.31
567 568 1.068121 GGCCCAGATGCTAACCCTAT 58.932 55.000 0.00 0.00 0.00 2.57
568 569 0.327095 TGGCCCAGATGCTAACCCTA 60.327 55.000 0.00 0.00 0.00 3.53
569 570 1.619363 TGGCCCAGATGCTAACCCT 60.619 57.895 0.00 0.00 0.00 4.34
570 571 1.152881 CTGGCCCAGATGCTAACCC 60.153 63.158 4.15 0.00 32.44 4.11
571 572 1.152881 CCTGGCCCAGATGCTAACC 60.153 63.158 13.74 0.00 32.44 2.85
572 573 1.825622 GCCTGGCCCAGATGCTAAC 60.826 63.158 13.74 0.00 32.44 2.34
573 574 2.597340 GCCTGGCCCAGATGCTAA 59.403 61.111 13.74 0.00 32.44 3.09
574 575 3.492353 GGCCTGGCCCAGATGCTA 61.492 66.667 27.77 0.00 44.06 3.49
584 585 1.937546 CTGGATTTCGTTGGCCTGGC 61.938 60.000 11.05 11.05 0.00 4.85
585 586 0.609131 ACTGGATTTCGTTGGCCTGG 60.609 55.000 3.32 0.00 0.00 4.45
586 587 0.804989 GACTGGATTTCGTTGGCCTG 59.195 55.000 3.32 0.00 0.00 4.85
587 588 0.693049 AGACTGGATTTCGTTGGCCT 59.307 50.000 3.32 0.00 0.00 5.19
588 589 0.804989 CAGACTGGATTTCGTTGGCC 59.195 55.000 0.00 0.00 0.00 5.36
589 590 0.804989 CCAGACTGGATTTCGTTGGC 59.195 55.000 17.22 0.00 40.96 4.52
590 591 2.076863 GACCAGACTGGATTTCGTTGG 58.923 52.381 28.56 0.00 40.96 3.77
591 592 1.726791 CGACCAGACTGGATTTCGTTG 59.273 52.381 28.56 4.45 40.96 4.10
592 593 1.939838 GCGACCAGACTGGATTTCGTT 60.940 52.381 28.56 3.04 40.96 3.85
593 594 0.389948 GCGACCAGACTGGATTTCGT 60.390 55.000 28.56 3.87 40.96 3.85
594 595 0.389817 TGCGACCAGACTGGATTTCG 60.390 55.000 28.56 24.93 40.96 3.46
595 596 1.808411 TTGCGACCAGACTGGATTTC 58.192 50.000 28.56 13.98 40.96 2.17
596 597 2.154462 CTTTGCGACCAGACTGGATTT 58.846 47.619 28.56 5.55 40.96 2.17
597 598 1.347707 TCTTTGCGACCAGACTGGATT 59.652 47.619 28.56 6.39 40.96 3.01
598 599 0.976641 TCTTTGCGACCAGACTGGAT 59.023 50.000 28.56 12.18 40.96 3.41
599 600 0.756294 TTCTTTGCGACCAGACTGGA 59.244 50.000 28.56 2.03 40.96 3.86
600 601 1.593196 TTTCTTTGCGACCAGACTGG 58.407 50.000 20.45 20.45 45.02 4.00
601 602 3.691049 TTTTTCTTTGCGACCAGACTG 57.309 42.857 0.00 0.00 0.00 3.51
602 603 3.253432 GGATTTTTCTTTGCGACCAGACT 59.747 43.478 0.00 0.00 0.00 3.24
603 604 3.004315 TGGATTTTTCTTTGCGACCAGAC 59.996 43.478 0.00 0.00 0.00 3.51
604 605 3.218453 TGGATTTTTCTTTGCGACCAGA 58.782 40.909 0.00 0.00 0.00 3.86
605 606 3.641437 TGGATTTTTCTTTGCGACCAG 57.359 42.857 0.00 0.00 0.00 4.00
606 607 3.056891 GGATGGATTTTTCTTTGCGACCA 60.057 43.478 0.00 0.00 0.00 4.02
607 608 3.511699 GGATGGATTTTTCTTTGCGACC 58.488 45.455 0.00 0.00 0.00 4.79
608 609 3.511699 GGGATGGATTTTTCTTTGCGAC 58.488 45.455 0.00 0.00 0.00 5.19
609 610 2.163412 CGGGATGGATTTTTCTTTGCGA 59.837 45.455 0.00 0.00 0.00 5.10
610 611 2.529151 CGGGATGGATTTTTCTTTGCG 58.471 47.619 0.00 0.00 0.00 4.85
611 612 2.270923 GCGGGATGGATTTTTCTTTGC 58.729 47.619 0.00 0.00 0.00 3.68
612 613 3.253230 GTGCGGGATGGATTTTTCTTTG 58.747 45.455 0.00 0.00 0.00 2.77
613 614 2.094752 CGTGCGGGATGGATTTTTCTTT 60.095 45.455 0.00 0.00 0.00 2.52
614 615 1.472480 CGTGCGGGATGGATTTTTCTT 59.528 47.619 0.00 0.00 0.00 2.52
615 616 1.094785 CGTGCGGGATGGATTTTTCT 58.905 50.000 0.00 0.00 0.00 2.52
616 617 0.100503 CCGTGCGGGATGGATTTTTC 59.899 55.000 0.75 0.00 38.47 2.29
657 658 1.890510 GTCACCAACACCCCGTCAC 60.891 63.158 0.00 0.00 0.00 3.67
735 736 1.146041 TCGCCAAATCCCCGATGAG 59.854 57.895 0.00 0.00 0.00 2.90
862 863 0.247736 AGCAGAACGGTAGCAGGAAG 59.752 55.000 0.00 0.00 0.00 3.46
1119 1156 3.069729 ACGACTTCCTGCTGTAAGTTCTT 59.930 43.478 3.15 0.00 36.10 2.52
1264 1301 2.044793 TCCCTGAACATCCAAGGACT 57.955 50.000 0.00 0.00 0.00 3.85
1471 1578 4.154195 CCTTGCTCGTACAAAATTAGCACT 59.846 41.667 0.00 0.00 42.50 4.40
2244 2388 1.153489 CTGTCGAGGACATGCCCAG 60.153 63.158 0.00 0.00 41.94 4.45
2879 3023 5.221803 CCTGAGTAGTATTGGGCAATGATCT 60.222 44.000 0.00 0.00 32.50 2.75
3063 3207 2.749621 GCAACTTGGTCGAGATGGATTT 59.250 45.455 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.