Multiple sequence alignment - TraesCS5B01G278600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G278600 chr5B 100.000 4266 0 0 1 4266 464330701 464326436 0.000000e+00 7878
1 TraesCS5B01G278600 chr5B 87.020 547 39 15 1 525 652382599 652383135 4.750000e-164 588
2 TraesCS5B01G278600 chr5A 88.993 3516 206 91 631 4060 488264948 488261528 0.000000e+00 4181
3 TraesCS5B01G278600 chr5A 90.909 99 7 2 541 637 488273610 488273512 9.630000e-27 132
4 TraesCS5B01G278600 chr5D 90.783 2235 113 48 510 2692 386654859 386652666 0.000000e+00 2900
5 TraesCS5B01G278600 chr5D 93.820 712 31 4 2706 3413 386652682 386651980 0.000000e+00 1059
6 TraesCS5B01G278600 chr5D 87.410 691 50 11 3411 4088 386651892 386651226 0.000000e+00 760
7 TraesCS5B01G278600 chr3B 92.818 543 22 8 1 526 680316857 680317399 0.000000e+00 771
8 TraesCS5B01G278600 chr3B 87.386 547 42 10 1 528 824194170 824193632 1.700000e-168 603
9 TraesCS5B01G278600 chr3B 93.258 89 3 3 451 538 69365174 69365260 1.250000e-25 128
10 TraesCS5B01G278600 chr6B 86.157 549 42 15 1 525 715951153 715951691 2.880000e-156 562
11 TraesCS5B01G278600 chr6B 84.686 542 60 13 1 524 91016592 91017128 1.760000e-143 520
12 TraesCS5B01G278600 chr6B 75.000 568 94 28 1 526 713472238 713472799 7.180000e-53 219
13 TraesCS5B01G278600 chr6B 73.997 573 96 31 1 526 91211002 91211568 2.620000e-42 183
14 TraesCS5B01G278600 chr4B 84.743 544 51 15 1 521 630316343 630315809 2.270000e-142 516
15 TraesCS5B01G278600 chr1B 82.514 549 66 18 1 526 358860178 358859637 5.030000e-124 455
16 TraesCS5B01G278600 chr2B 95.000 160 4 2 368 527 485338224 485338379 9.160000e-62 248
17 TraesCS5B01G278600 chr2B 74.113 564 100 27 1 524 801047335 801047892 1.570000e-44 191
18 TraesCS5B01G278600 chr7B 74.250 567 100 25 1 526 640470129 640470690 3.370000e-46 196
19 TraesCS5B01G278600 chr2D 85.833 120 13 4 409 525 628036555 628036673 1.610000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G278600 chr5B 464326436 464330701 4265 True 7878 7878 100.000 1 4266 1 chr5B.!!$R1 4265
1 TraesCS5B01G278600 chr5B 652382599 652383135 536 False 588 588 87.020 1 525 1 chr5B.!!$F1 524
2 TraesCS5B01G278600 chr5A 488261528 488264948 3420 True 4181 4181 88.993 631 4060 1 chr5A.!!$R1 3429
3 TraesCS5B01G278600 chr5D 386651226 386654859 3633 True 1573 2900 90.671 510 4088 3 chr5D.!!$R1 3578
4 TraesCS5B01G278600 chr3B 680316857 680317399 542 False 771 771 92.818 1 526 1 chr3B.!!$F2 525
5 TraesCS5B01G278600 chr3B 824193632 824194170 538 True 603 603 87.386 1 528 1 chr3B.!!$R1 527
6 TraesCS5B01G278600 chr6B 715951153 715951691 538 False 562 562 86.157 1 525 1 chr6B.!!$F4 524
7 TraesCS5B01G278600 chr6B 91016592 91017128 536 False 520 520 84.686 1 524 1 chr6B.!!$F1 523
8 TraesCS5B01G278600 chr6B 713472238 713472799 561 False 219 219 75.000 1 526 1 chr6B.!!$F3 525
9 TraesCS5B01G278600 chr4B 630315809 630316343 534 True 516 516 84.743 1 521 1 chr4B.!!$R1 520
10 TraesCS5B01G278600 chr1B 358859637 358860178 541 True 455 455 82.514 1 526 1 chr1B.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 677 0.107897 AATCAGTGGCGCACCGATAA 60.108 50.0 10.83 0.0 39.70 1.75 F
659 724 0.173255 CCCATCCGTGATTTTGGCAC 59.827 55.0 0.00 0.0 0.00 5.01 F
1503 1653 0.468226 TCGCCAAGGTGAGTTCTTGT 59.532 50.0 0.00 0.0 39.78 3.16 F
1552 1702 0.881118 TGTTGAGGAAATTCTGCCGC 59.119 50.0 0.00 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 1682 1.135575 GCGGCAGAATTTCCTCAACAG 60.136 52.381 0.00 0.0 0.00 3.16 R
2209 2375 1.144969 CGTGACTATTTGTGTGCCGT 58.855 50.000 0.00 0.0 0.00 5.68 R
3183 3354 0.253044 GCAGGATGGTAGTTCAGCCA 59.747 55.000 1.99 0.0 44.98 4.75 R
3504 3774 2.337583 TGATAAGTCACTGTTCGCTGC 58.662 47.619 0.00 0.0 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.584874 TCCCGCAAGAAATAAGTTGATGA 58.415 39.130 0.00 0.00 43.02 2.92
45 46 5.123820 CCGCAAGAAATAAGTTGATGAAGGA 59.876 40.000 0.00 0.00 43.02 3.36
165 167 1.337071 TCTCGTGTCTGCGAAGAAAGT 59.663 47.619 0.00 0.00 40.57 2.66
274 296 4.895889 ACTGTAATGCTGATGTAGGCTCTA 59.104 41.667 0.00 0.00 0.00 2.43
285 308 7.486551 GCTGATGTAGGCTCTATTCTTATAACG 59.513 40.741 0.00 0.00 0.00 3.18
286 309 8.405418 TGATGTAGGCTCTATTCTTATAACGT 57.595 34.615 0.00 0.00 0.00 3.99
333 371 1.623542 GCCTTGGACCACTCCCGTAT 61.624 60.000 0.00 0.00 35.34 3.06
367 412 3.408853 GAGGGTTCCGGGAAGGGG 61.409 72.222 10.35 0.00 41.52 4.79
507 571 7.722949 TTAATGGAAATTGGAGAGAATGCTT 57.277 32.000 0.00 0.00 0.00 3.91
549 613 8.735692 AATCAAATCAAAGAAGAAAAAGGCAA 57.264 26.923 0.00 0.00 0.00 4.52
551 615 7.555087 TCAAATCAAAGAAGAAAAAGGCAAGA 58.445 30.769 0.00 0.00 0.00 3.02
552 616 7.707893 TCAAATCAAAGAAGAAAAAGGCAAGAG 59.292 33.333 0.00 0.00 0.00 2.85
553 617 6.721704 ATCAAAGAAGAAAAAGGCAAGAGT 57.278 33.333 0.00 0.00 0.00 3.24
554 618 7.823745 ATCAAAGAAGAAAAAGGCAAGAGTA 57.176 32.000 0.00 0.00 0.00 2.59
555 619 7.264373 TCAAAGAAGAAAAAGGCAAGAGTAG 57.736 36.000 0.00 0.00 0.00 2.57
559 623 7.265647 AGAAGAAAAAGGCAAGAGTAGTTTC 57.734 36.000 0.00 0.00 0.00 2.78
607 672 2.126346 GCAAATCAGTGGCGCACC 60.126 61.111 10.83 0.00 34.49 5.01
612 677 0.107897 AATCAGTGGCGCACCGATAA 60.108 50.000 10.83 0.00 39.70 1.75
614 679 0.320858 TCAGTGGCGCACCGATAAAA 60.321 50.000 10.83 0.00 39.70 1.52
659 724 0.173255 CCCATCCGTGATTTTGGCAC 59.827 55.000 0.00 0.00 0.00 5.01
726 792 4.096003 CCCCGGCAGTCCATCGTT 62.096 66.667 0.00 0.00 0.00 3.85
753 822 6.984474 GGGGGTAAAAGAAAAGAAAAACAGAG 59.016 38.462 0.00 0.00 0.00 3.35
845 918 1.002315 GTCTTACGGGCAAGGTTACCA 59.998 52.381 3.51 0.00 0.00 3.25
860 934 2.918374 TACCACCACCACCACCACCT 62.918 60.000 0.00 0.00 0.00 4.00
888 962 3.625764 CGTCTCTTTTGTTTTGACCTCCA 59.374 43.478 0.00 0.00 0.00 3.86
890 964 3.951680 TCTCTTTTGTTTTGACCTCCACC 59.048 43.478 0.00 0.00 0.00 4.61
891 965 3.699038 CTCTTTTGTTTTGACCTCCACCA 59.301 43.478 0.00 0.00 0.00 4.17
892 966 4.285863 TCTTTTGTTTTGACCTCCACCAT 58.714 39.130 0.00 0.00 0.00 3.55
1020 1115 2.363361 CCACCTACCGTCCTCCCT 59.637 66.667 0.00 0.00 0.00 4.20
1021 1116 1.757340 CCACCTACCGTCCTCCCTC 60.757 68.421 0.00 0.00 0.00 4.30
1022 1117 1.000019 CACCTACCGTCCTCCCTCA 60.000 63.158 0.00 0.00 0.00 3.86
1075 1182 4.825679 CTCACCCTCCCCCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
1079 1186 4.472310 CCCTCCCCCTCCCCCATT 62.472 72.222 0.00 0.00 0.00 3.16
1080 1187 2.778717 CCTCCCCCTCCCCCATTC 60.779 72.222 0.00 0.00 0.00 2.67
1081 1188 2.378522 CTCCCCCTCCCCCATTCT 59.621 66.667 0.00 0.00 0.00 2.40
1119 1228 4.957684 ATCATCGCGGCCGCTCTG 62.958 66.667 43.60 36.79 39.32 3.35
1134 1249 3.767806 CTGCTCTGCTCCTCGCCA 61.768 66.667 0.00 0.00 38.05 5.69
1146 1278 2.415843 TCGCCAATCGATCGGTCC 59.584 61.111 16.41 0.00 43.16 4.46
1147 1279 3.030308 CGCCAATCGATCGGTCCG 61.030 66.667 16.41 4.39 41.67 4.79
1148 1280 3.338676 GCCAATCGATCGGTCCGC 61.339 66.667 16.41 9.59 0.00 5.54
1149 1281 2.661866 CCAATCGATCGGTCCGCC 60.662 66.667 16.41 0.00 0.00 6.13
1150 1282 2.106131 CAATCGATCGGTCCGCCA 59.894 61.111 16.41 0.00 34.09 5.69
1151 1283 1.951130 CAATCGATCGGTCCGCCAG 60.951 63.158 16.41 0.00 34.09 4.85
1152 1284 3.151958 AATCGATCGGTCCGCCAGG 62.152 63.158 16.41 0.00 39.46 4.45
1503 1653 0.468226 TCGCCAAGGTGAGTTCTTGT 59.532 50.000 0.00 0.00 39.78 3.16
1515 1665 5.011023 GGTGAGTTCTTGTTCCATGGATTTT 59.989 40.000 17.06 0.00 0.00 1.82
1518 1668 7.970614 GTGAGTTCTTGTTCCATGGATTTTATC 59.029 37.037 17.06 7.40 0.00 1.75
1519 1669 7.890127 TGAGTTCTTGTTCCATGGATTTTATCT 59.110 33.333 17.06 9.12 0.00 1.98
1520 1670 9.396022 GAGTTCTTGTTCCATGGATTTTATCTA 57.604 33.333 17.06 0.00 0.00 1.98
1521 1671 9.178758 AGTTCTTGTTCCATGGATTTTATCTAC 57.821 33.333 17.06 8.66 0.00 2.59
1524 1674 9.753674 TCTTGTTCCATGGATTTTATCTACTTT 57.246 29.630 17.06 0.00 0.00 2.66
1552 1702 0.881118 TGTTGAGGAAATTCTGCCGC 59.119 50.000 0.00 0.00 0.00 6.53
1561 1711 1.097547 AATTCTGCCGCGCATTAGCT 61.098 50.000 8.75 0.00 38.13 3.32
1562 1712 1.779025 ATTCTGCCGCGCATTAGCTG 61.779 55.000 8.75 8.66 38.13 4.24
1564 1714 4.776322 TGCCGCGCATTAGCTGGT 62.776 61.111 8.75 0.00 39.10 4.00
1566 1716 2.177580 GCCGCGCATTAGCTGGTTA 61.178 57.895 8.75 0.00 39.10 2.85
1661 1811 1.798223 TGCAAAATTGAGGACGAGACG 59.202 47.619 0.00 0.00 0.00 4.18
1889 2046 5.105837 ACTCTAATTTTACTCTCGCCGTCTT 60.106 40.000 0.00 0.00 0.00 3.01
1923 2084 7.498900 TGTCTGAATGAAAAGTTGTCAGTACAT 59.501 33.333 1.51 0.00 37.55 2.29
1948 2109 2.010145 TACTCGCTGTCCTCAATTGC 57.990 50.000 0.00 0.00 0.00 3.56
2054 2217 9.170890 AGGTATCAAAATATTCCATCCAGACTA 57.829 33.333 0.00 0.00 0.00 2.59
2141 2307 4.396357 TTCCCATTTGTAGGTGATTGGT 57.604 40.909 0.00 0.00 0.00 3.67
2209 2375 1.336887 GCAGCAAGTCGAGGTTAGACA 60.337 52.381 0.00 0.00 40.84 3.41
2212 2378 1.978542 CAAGTCGAGGTTAGACACGG 58.021 55.000 0.00 0.00 40.84 4.94
2220 2386 1.134340 AGGTTAGACACGGCACACAAA 60.134 47.619 0.00 0.00 0.00 2.83
2222 2388 3.068560 GGTTAGACACGGCACACAAATA 58.931 45.455 0.00 0.00 0.00 1.40
2239 2405 6.263617 ACACAAATAGTCACGGTACCAAAATT 59.736 34.615 13.54 0.00 0.00 1.82
2253 2419 5.453567 ACCAAAATTGTTTGTAGCTCTCC 57.546 39.130 0.00 0.00 42.26 3.71
2255 2421 4.023193 CCAAAATTGTTTGTAGCTCTCCGT 60.023 41.667 0.00 0.00 42.26 4.69
2269 2435 4.646945 AGCTCTCCGTGAATTCTCTAATCA 59.353 41.667 7.05 0.00 0.00 2.57
2313 2480 3.006247 GTTCTTGTCCATGAAGCTCTCC 58.994 50.000 0.00 0.00 0.00 3.71
2425 2594 4.450053 GCTCTATGAAACAATCTGCCTCT 58.550 43.478 0.00 0.00 0.00 3.69
2492 2661 4.415332 TCGGCGAGCACGGTCTTC 62.415 66.667 4.99 0.00 40.15 2.87
2677 2846 5.275067 TGCCTGGAAAATTGCAATATACC 57.725 39.130 13.39 15.45 0.00 2.73
2678 2847 4.961730 TGCCTGGAAAATTGCAATATACCT 59.038 37.500 13.39 0.00 0.00 3.08
2679 2848 6.132658 TGCCTGGAAAATTGCAATATACCTA 58.867 36.000 13.39 6.54 0.00 3.08
2680 2849 6.040391 TGCCTGGAAAATTGCAATATACCTAC 59.960 38.462 13.39 9.72 0.00 3.18
2681 2850 6.265422 GCCTGGAAAATTGCAATATACCTACT 59.735 38.462 13.39 0.00 0.00 2.57
2682 2851 7.522236 GCCTGGAAAATTGCAATATACCTACTC 60.522 40.741 13.39 1.13 0.00 2.59
2683 2852 7.502226 CCTGGAAAATTGCAATATACCTACTCA 59.498 37.037 13.39 1.88 0.00 3.41
2684 2853 8.815565 TGGAAAATTGCAATATACCTACTCAA 57.184 30.769 13.39 0.00 0.00 3.02
2685 2854 9.420118 TGGAAAATTGCAATATACCTACTCAAT 57.580 29.630 13.39 0.00 0.00 2.57
2690 2859 9.851686 AATTGCAATATACCTACTCAATTGAGA 57.148 29.630 36.15 20.69 44.74 3.27
2692 2861 9.494271 TTGCAATATACCTACTCAATTGAGATC 57.506 33.333 36.15 11.50 44.74 2.75
2693 2862 8.097038 TGCAATATACCTACTCAATTGAGATCC 58.903 37.037 36.15 15.04 44.74 3.36
2694 2863 8.317679 GCAATATACCTACTCAATTGAGATCCT 58.682 37.037 36.15 19.46 44.74 3.24
2699 2868 7.020827 ACCTACTCAATTGAGATCCTTTTCA 57.979 36.000 36.15 11.91 44.74 2.69
2700 2869 7.461749 ACCTACTCAATTGAGATCCTTTTCAA 58.538 34.615 36.15 10.91 44.74 2.69
2701 2870 7.944554 ACCTACTCAATTGAGATCCTTTTCAAA 59.055 33.333 36.15 9.64 44.74 2.69
2702 2871 8.796475 CCTACTCAATTGAGATCCTTTTCAAAA 58.204 33.333 36.15 6.18 44.74 2.44
2773 2944 1.696336 ACCTCTTCTTCTCAGCAGCAA 59.304 47.619 0.00 0.00 0.00 3.91
2789 2960 1.379642 GCAAGATTTCTGGGAGGCGG 61.380 60.000 0.00 0.00 0.00 6.13
2871 3042 5.232626 CACCGAATTTCGATGGTTCGTATAA 59.767 40.000 19.91 0.00 43.74 0.98
2938 3109 3.304057 GCTTGGACTAACAGCTTTGTGTC 60.304 47.826 0.00 0.00 0.00 3.67
2939 3110 3.552132 TGGACTAACAGCTTTGTGTCA 57.448 42.857 7.50 0.00 0.00 3.58
2978 3149 1.079543 AGGTCAGCTACAAGCAGCG 60.080 57.895 1.22 0.00 45.56 5.18
3126 3297 5.114780 ACTGAGAACTGATTTGATCATCCG 58.885 41.667 0.00 0.00 38.85 4.18
3181 3352 4.141688 GGATCGGGGTCAGTAGAAAGAATT 60.142 45.833 0.00 0.00 0.00 2.17
3316 3490 7.776107 TCATCTCTCCTAATGTGTAAGAACTG 58.224 38.462 0.00 0.00 0.00 3.16
3464 3734 1.454479 CCCAATGATTGAGCCGCCT 60.454 57.895 6.76 0.00 0.00 5.52
3504 3774 3.618698 CTTGCTGAATGCTCATCAATCG 58.381 45.455 0.00 0.00 37.14 3.34
3543 3813 2.873472 TCAATCACGGTTTAGCGTGTTT 59.127 40.909 27.05 22.98 37.39 2.83
3552 3822 3.277481 GTTTAGCGTGTTTGTTCACTCG 58.723 45.455 0.00 0.00 36.33 4.18
3569 3839 4.456911 TCACTCGTTTCGGTACTTACTGAT 59.543 41.667 0.00 0.00 40.93 2.90
3575 3845 3.416119 TCGGTACTTACTGATTGCTCG 57.584 47.619 0.00 0.00 36.71 5.03
3586 3856 3.254629 ATTGCTCGCCAATCACAGT 57.745 47.368 0.00 0.00 40.02 3.55
3593 3863 1.601903 TCGCCAATCACAGTTGAACAC 59.398 47.619 0.00 0.00 34.61 3.32
3608 3878 2.271800 GAACACTGACTTATCGCCAGG 58.728 52.381 0.00 0.00 32.52 4.45
3620 3890 5.354234 ACTTATCGCCAGGTTTAAGTTCATG 59.646 40.000 5.47 0.00 32.43 3.07
3710 3989 2.442424 GCGTTTTAGCGTGTTTGTTCA 58.558 42.857 0.00 0.00 0.00 3.18
3718 3997 2.952978 AGCGTGTTTGTTCACCCATTTA 59.047 40.909 0.00 0.00 35.18 1.40
3730 4009 5.954153 TCACCCATTTAGGTCCGTATTAA 57.046 39.130 0.00 0.00 38.39 1.40
3731 4010 5.920903 TCACCCATTTAGGTCCGTATTAAG 58.079 41.667 0.00 0.00 38.39 1.85
3732 4011 5.662208 TCACCCATTTAGGTCCGTATTAAGA 59.338 40.000 0.00 0.00 38.39 2.10
3733 4012 5.756833 CACCCATTTAGGTCCGTATTAAGAC 59.243 44.000 0.00 0.00 38.39 3.01
3734 4013 5.664457 ACCCATTTAGGTCCGTATTAAGACT 59.336 40.000 0.00 0.00 33.81 3.24
3735 4014 6.840705 ACCCATTTAGGTCCGTATTAAGACTA 59.159 38.462 0.00 0.00 33.81 2.59
3736 4015 7.511714 ACCCATTTAGGTCCGTATTAAGACTAT 59.488 37.037 0.00 0.00 33.81 2.12
3737 4016 8.373220 CCCATTTAGGTCCGTATTAAGACTATT 58.627 37.037 0.00 0.00 34.66 1.73
3786 4067 1.567649 TGGACGGAGGGAGTAGTATGT 59.432 52.381 0.00 0.00 0.00 2.29
3804 4091 0.590195 GTGACTTGCAGCTGTTGGAG 59.410 55.000 16.64 10.43 0.00 3.86
3822 4118 6.127647 TGTTGGAGCCTTTTAATCATCATCAC 60.128 38.462 0.00 0.00 0.00 3.06
3830 4126 7.487189 GCCTTTTAATCATCATCACAAACTCTG 59.513 37.037 0.00 0.00 0.00 3.35
3840 4136 6.005823 TCATCACAAACTCTGATTTCACCAT 58.994 36.000 0.00 0.00 0.00 3.55
3841 4137 5.947228 TCACAAACTCTGATTTCACCATC 57.053 39.130 0.00 0.00 0.00 3.51
3842 4138 5.375773 TCACAAACTCTGATTTCACCATCA 58.624 37.500 0.00 0.00 0.00 3.07
3843 4139 5.239306 TCACAAACTCTGATTTCACCATCAC 59.761 40.000 0.00 0.00 0.00 3.06
3844 4140 4.520492 ACAAACTCTGATTTCACCATCACC 59.480 41.667 0.00 0.00 0.00 4.02
3845 4141 4.371624 AACTCTGATTTCACCATCACCA 57.628 40.909 0.00 0.00 0.00 4.17
3846 4142 4.581309 ACTCTGATTTCACCATCACCAT 57.419 40.909 0.00 0.00 0.00 3.55
3847 4143 4.521146 ACTCTGATTTCACCATCACCATC 58.479 43.478 0.00 0.00 0.00 3.51
3848 4144 4.019051 ACTCTGATTTCACCATCACCATCA 60.019 41.667 0.00 0.00 0.00 3.07
3849 4145 4.264253 TCTGATTTCACCATCACCATCAC 58.736 43.478 0.00 0.00 0.00 3.06
3850 4146 3.355378 TGATTTCACCATCACCATCACC 58.645 45.455 0.00 0.00 0.00 4.02
3851 4147 2.967745 TTTCACCATCACCATCACCA 57.032 45.000 0.00 0.00 0.00 4.17
3852 4148 3.454719 TTTCACCATCACCATCACCAT 57.545 42.857 0.00 0.00 0.00 3.55
3853 4149 2.715749 TCACCATCACCATCACCATC 57.284 50.000 0.00 0.00 0.00 3.51
3854 4150 1.914798 TCACCATCACCATCACCATCA 59.085 47.619 0.00 0.00 0.00 3.07
3855 4151 2.019249 CACCATCACCATCACCATCAC 58.981 52.381 0.00 0.00 0.00 3.06
3856 4152 1.064463 ACCATCACCATCACCATCACC 60.064 52.381 0.00 0.00 0.00 4.02
3857 4153 1.064537 CCATCACCATCACCATCACCA 60.065 52.381 0.00 0.00 0.00 4.17
3858 4154 2.423803 CCATCACCATCACCATCACCAT 60.424 50.000 0.00 0.00 0.00 3.55
3882 4195 2.967887 ACCAGCAGCATTCCTTCTTTTT 59.032 40.909 0.00 0.00 0.00 1.94
3883 4196 3.243975 ACCAGCAGCATTCCTTCTTTTTG 60.244 43.478 0.00 0.00 0.00 2.44
3930 4249 3.751246 TGCGCAGGCAGAAATGGC 61.751 61.111 5.66 0.00 46.21 4.40
3936 4255 1.098050 CAGGCAGAAATGGCAGTACC 58.902 55.000 4.56 0.00 39.84 3.34
3951 4273 4.463891 GGCAGTACCAGTTACCACTAGTTA 59.536 45.833 0.00 0.00 38.86 2.24
3952 4274 5.393896 GGCAGTACCAGTTACCACTAGTTAG 60.394 48.000 0.00 0.00 38.86 2.34
3979 4302 2.823628 GTGGTGCACGTAGGAGAAC 58.176 57.895 11.45 0.00 0.00 3.01
4065 4388 5.233050 CGCTGGATCTCATTTTGTAGTAGTG 59.767 44.000 0.00 0.00 0.00 2.74
4088 4411 8.424133 AGTGTCCAGCTTTCTCAAAATAAAAAT 58.576 29.630 0.00 0.00 0.00 1.82
4089 4412 9.045223 GTGTCCAGCTTTCTCAAAATAAAAATT 57.955 29.630 0.00 0.00 0.00 1.82
4110 4433 9.845740 AAAATTAAGAAAAGGCAACCATAAAGT 57.154 25.926 0.00 0.00 37.17 2.66
4111 4434 9.845740 AAATTAAGAAAAGGCAACCATAAAGTT 57.154 25.926 0.00 0.00 37.17 2.66
4112 4435 9.845740 AATTAAGAAAAGGCAACCATAAAGTTT 57.154 25.926 0.00 0.00 37.17 2.66
4115 4438 8.887036 AAGAAAAGGCAACCATAAAGTTTAAG 57.113 30.769 0.00 0.00 37.17 1.85
4116 4439 8.018537 AGAAAAGGCAACCATAAAGTTTAAGT 57.981 30.769 0.00 0.00 37.17 2.24
4117 4440 8.482943 AGAAAAGGCAACCATAAAGTTTAAGTT 58.517 29.630 0.00 4.27 37.17 2.66
4118 4441 8.657074 AAAAGGCAACCATAAAGTTTAAGTTC 57.343 30.769 10.07 6.93 37.17 3.01
4119 4442 6.340962 AGGCAACCATAAAGTTTAAGTTCC 57.659 37.500 10.07 12.64 37.17 3.62
4120 4443 6.075315 AGGCAACCATAAAGTTTAAGTTCCT 58.925 36.000 16.62 16.62 37.17 3.36
4121 4444 7.235804 AGGCAACCATAAAGTTTAAGTTCCTA 58.764 34.615 18.56 0.00 37.17 2.94
4122 4445 7.176165 AGGCAACCATAAAGTTTAAGTTCCTAC 59.824 37.037 18.56 9.60 37.17 3.18
4123 4446 7.176165 GGCAACCATAAAGTTTAAGTTCCTACT 59.824 37.037 10.07 0.00 35.68 2.57
4124 4447 8.235226 GCAACCATAAAGTTTAAGTTCCTACTC 58.765 37.037 10.07 0.00 31.99 2.59
4125 4448 9.280174 CAACCATAAAGTTTAAGTTCCTACTCA 57.720 33.333 10.07 0.00 31.99 3.41
4126 4449 9.503399 AACCATAAAGTTTAAGTTCCTACTCAG 57.497 33.333 0.00 0.00 31.99 3.35
4127 4450 8.101419 ACCATAAAGTTTAAGTTCCTACTCAGG 58.899 37.037 0.00 0.00 44.17 3.86
4128 4451 7.065923 CCATAAAGTTTAAGTTCCTACTCAGGC 59.934 40.741 0.00 0.00 42.30 4.85
4129 4452 4.554960 AGTTTAAGTTCCTACTCAGGCC 57.445 45.455 0.00 0.00 42.30 5.19
4130 4453 3.263681 AGTTTAAGTTCCTACTCAGGCCC 59.736 47.826 0.00 0.00 42.30 5.80
4131 4454 2.942604 TAAGTTCCTACTCAGGCCCT 57.057 50.000 0.00 0.00 42.30 5.19
4132 4455 1.280457 AAGTTCCTACTCAGGCCCTG 58.720 55.000 3.69 3.69 42.30 4.45
4133 4456 0.117340 AGTTCCTACTCAGGCCCTGT 59.883 55.000 11.27 0.00 42.30 4.00
4134 4457 0.984995 GTTCCTACTCAGGCCCTGTT 59.015 55.000 11.27 1.57 42.30 3.16
4135 4458 1.351350 GTTCCTACTCAGGCCCTGTTT 59.649 52.381 11.27 1.19 42.30 2.83
4136 4459 0.984230 TCCTACTCAGGCCCTGTTTG 59.016 55.000 11.27 5.20 42.30 2.93
4137 4460 0.035056 CCTACTCAGGCCCTGTTTGG 60.035 60.000 11.27 5.97 34.35 3.28
4138 4461 0.984230 CTACTCAGGCCCTGTTTGGA 59.016 55.000 11.27 0.00 38.35 3.53
4139 4462 1.351017 CTACTCAGGCCCTGTTTGGAA 59.649 52.381 11.27 0.00 38.35 3.53
4140 4463 0.178990 ACTCAGGCCCTGTTTGGAAC 60.179 55.000 11.27 0.00 38.35 3.62
4141 4464 1.228124 TCAGGCCCTGTTTGGAACG 60.228 57.895 11.27 0.00 38.35 3.95
4142 4465 2.597510 AGGCCCTGTTTGGAACGC 60.598 61.111 0.00 0.00 38.35 4.84
4143 4466 2.909965 GGCCCTGTTTGGAACGCA 60.910 61.111 0.00 0.00 38.35 5.24
4144 4467 2.644992 GCCCTGTTTGGAACGCAG 59.355 61.111 0.00 0.00 38.35 5.18
4145 4468 2.919494 GCCCTGTTTGGAACGCAGG 61.919 63.158 0.00 0.00 46.83 4.85
4148 4471 3.845625 CTGTTTGGAACGCAGGAAC 57.154 52.632 0.00 0.00 0.00 3.62
4149 4472 1.308998 CTGTTTGGAACGCAGGAACT 58.691 50.000 0.00 0.00 43.88 3.01
4150 4473 1.676006 CTGTTTGGAACGCAGGAACTT 59.324 47.619 0.00 0.00 34.60 2.66
4151 4474 2.096248 TGTTTGGAACGCAGGAACTTT 58.904 42.857 0.00 0.00 34.60 2.66
4152 4475 2.098443 TGTTTGGAACGCAGGAACTTTC 59.902 45.455 0.00 0.00 34.60 2.62
4164 4487 2.574450 GGAACTTTCCCACGGTAAACA 58.426 47.619 0.00 0.00 41.62 2.83
4165 4488 2.950975 GGAACTTTCCCACGGTAAACAA 59.049 45.455 0.00 0.00 41.62 2.83
4166 4489 3.380954 GGAACTTTCCCACGGTAAACAAA 59.619 43.478 0.00 0.00 41.62 2.83
4167 4490 4.353737 GAACTTTCCCACGGTAAACAAAC 58.646 43.478 0.00 0.00 0.00 2.93
4168 4491 3.354467 ACTTTCCCACGGTAAACAAACA 58.646 40.909 0.00 0.00 0.00 2.83
4169 4492 3.762823 ACTTTCCCACGGTAAACAAACAA 59.237 39.130 0.00 0.00 0.00 2.83
4170 4493 4.403113 ACTTTCCCACGGTAAACAAACAAT 59.597 37.500 0.00 0.00 0.00 2.71
4171 4494 5.105269 ACTTTCCCACGGTAAACAAACAATT 60.105 36.000 0.00 0.00 0.00 2.32
4172 4495 5.340439 TTCCCACGGTAAACAAACAATTT 57.660 34.783 0.00 0.00 0.00 1.82
4173 4496 6.461110 TTCCCACGGTAAACAAACAATTTA 57.539 33.333 0.00 0.00 0.00 1.40
4174 4497 5.829829 TCCCACGGTAAACAAACAATTTAC 58.170 37.500 0.00 0.00 40.36 2.01
4184 4507 9.400638 GTAAACAAACAATTTACCATGAATCGA 57.599 29.630 0.00 0.00 36.80 3.59
4185 4508 7.867445 AACAAACAATTTACCATGAATCGAC 57.133 32.000 0.00 0.00 0.00 4.20
4186 4509 6.386654 ACAAACAATTTACCATGAATCGACC 58.613 36.000 0.00 0.00 0.00 4.79
4187 4510 4.875544 ACAATTTACCATGAATCGACCG 57.124 40.909 0.00 0.00 0.00 4.79
4188 4511 4.258543 ACAATTTACCATGAATCGACCGT 58.741 39.130 0.00 0.00 0.00 4.83
4189 4512 4.094294 ACAATTTACCATGAATCGACCGTG 59.906 41.667 0.00 0.00 0.00 4.94
4190 4513 3.322211 TTTACCATGAATCGACCGTGT 57.678 42.857 0.00 0.00 0.00 4.49
4191 4514 3.322211 TTACCATGAATCGACCGTGTT 57.678 42.857 0.00 0.00 0.00 3.32
4192 4515 2.178912 ACCATGAATCGACCGTGTTT 57.821 45.000 0.00 0.00 0.00 2.83
4193 4516 2.073816 ACCATGAATCGACCGTGTTTC 58.926 47.619 0.00 0.00 0.00 2.78
4194 4517 2.289444 ACCATGAATCGACCGTGTTTCT 60.289 45.455 0.00 0.00 0.00 2.52
4195 4518 2.348666 CCATGAATCGACCGTGTTTCTC 59.651 50.000 0.00 0.00 0.00 2.87
4196 4519 3.254060 CATGAATCGACCGTGTTTCTCT 58.746 45.455 0.00 0.00 0.00 3.10
4197 4520 3.380479 TGAATCGACCGTGTTTCTCTT 57.620 42.857 0.00 0.00 0.00 2.85
4198 4521 3.314553 TGAATCGACCGTGTTTCTCTTC 58.685 45.455 0.00 0.00 0.00 2.87
4199 4522 3.005472 TGAATCGACCGTGTTTCTCTTCT 59.995 43.478 0.00 0.00 0.00 2.85
4200 4523 2.701073 TCGACCGTGTTTCTCTTCTC 57.299 50.000 0.00 0.00 0.00 2.87
4201 4524 1.951602 TCGACCGTGTTTCTCTTCTCA 59.048 47.619 0.00 0.00 0.00 3.27
4202 4525 2.052157 CGACCGTGTTTCTCTTCTCAC 58.948 52.381 0.00 0.00 0.00 3.51
4203 4526 2.405172 GACCGTGTTTCTCTTCTCACC 58.595 52.381 0.00 0.00 0.00 4.02
4204 4527 1.269621 ACCGTGTTTCTCTTCTCACCG 60.270 52.381 0.00 0.00 0.00 4.94
4205 4528 1.419374 CGTGTTTCTCTTCTCACCGG 58.581 55.000 0.00 0.00 0.00 5.28
4206 4529 1.000607 CGTGTTTCTCTTCTCACCGGA 60.001 52.381 9.46 0.00 0.00 5.14
4207 4530 2.678324 GTGTTTCTCTTCTCACCGGAG 58.322 52.381 9.46 0.00 42.80 4.63
4208 4531 1.000955 TGTTTCTCTTCTCACCGGAGC 59.999 52.381 9.46 0.00 41.13 4.70
4209 4532 1.000955 GTTTCTCTTCTCACCGGAGCA 59.999 52.381 9.46 0.00 41.13 4.26
4210 4533 0.603569 TTCTCTTCTCACCGGAGCAC 59.396 55.000 9.46 0.00 41.13 4.40
4211 4534 1.153939 CTCTTCTCACCGGAGCACG 60.154 63.158 9.46 0.00 41.13 5.34
4220 4543 2.813908 CGGAGCACGGTGGCTAAC 60.814 66.667 10.60 4.06 45.99 2.34
4221 4544 2.436115 GGAGCACGGTGGCTAACC 60.436 66.667 10.60 3.00 45.99 2.85
4228 4551 2.901042 GGTGGCTAACCCTCTCCG 59.099 66.667 0.00 0.00 44.02 4.63
4229 4552 1.684734 GGTGGCTAACCCTCTCCGA 60.685 63.158 0.00 0.00 44.02 4.55
4230 4553 1.516423 GTGGCTAACCCTCTCCGAC 59.484 63.158 0.00 0.00 33.59 4.79
4231 4554 1.684734 TGGCTAACCCTCTCCGACC 60.685 63.158 0.00 0.00 33.59 4.79
4232 4555 1.381463 GGCTAACCCTCTCCGACCT 60.381 63.158 0.00 0.00 0.00 3.85
4233 4556 1.393487 GGCTAACCCTCTCCGACCTC 61.393 65.000 0.00 0.00 0.00 3.85
4234 4557 0.396001 GCTAACCCTCTCCGACCTCT 60.396 60.000 0.00 0.00 0.00 3.69
4235 4558 1.394618 CTAACCCTCTCCGACCTCTG 58.605 60.000 0.00 0.00 0.00 3.35
4236 4559 0.683504 TAACCCTCTCCGACCTCTGC 60.684 60.000 0.00 0.00 0.00 4.26
4237 4560 3.522731 CCCTCTCCGACCTCTGCG 61.523 72.222 0.00 0.00 0.00 5.18
4238 4561 2.752238 CCTCTCCGACCTCTGCGT 60.752 66.667 0.00 0.00 0.00 5.24
4239 4562 2.766400 CCTCTCCGACCTCTGCGTC 61.766 68.421 0.00 0.00 0.00 5.19
4245 4568 3.371063 GACCTCTGCGTCGGGTGA 61.371 66.667 0.00 0.00 33.01 4.02
4246 4569 2.680352 ACCTCTGCGTCGGGTGAT 60.680 61.111 0.00 0.00 31.48 3.06
4247 4570 2.202797 CCTCTGCGTCGGGTGATG 60.203 66.667 0.00 0.00 0.00 3.07
4261 4584 3.418022 TGATGCACACAGCCAAAGA 57.582 47.368 0.00 0.00 44.83 2.52
4262 4585 1.689984 TGATGCACACAGCCAAAGAA 58.310 45.000 0.00 0.00 44.83 2.52
4263 4586 2.030371 TGATGCACACAGCCAAAGAAA 58.970 42.857 0.00 0.00 44.83 2.52
4264 4587 2.629137 TGATGCACACAGCCAAAGAAAT 59.371 40.909 0.00 0.00 44.83 2.17
4265 4588 3.069872 TGATGCACACAGCCAAAGAAATT 59.930 39.130 0.00 0.00 44.83 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.157840 ACTTATTTCTTGCGGGATTTGTCC 59.842 41.667 0.00 0.00 0.00 4.02
41 42 4.042187 ACTTACTTGCTTCACTCCATCCTT 59.958 41.667 0.00 0.00 0.00 3.36
45 46 4.564406 CCTCACTTACTTGCTTCACTCCAT 60.564 45.833 0.00 0.00 0.00 3.41
274 296 4.451900 CAGCCCCAGAACGTTATAAGAAT 58.548 43.478 0.00 0.00 0.00 2.40
285 308 1.923356 TGAAAATCCAGCCCCAGAAC 58.077 50.000 0.00 0.00 0.00 3.01
286 309 2.042842 TCATGAAAATCCAGCCCCAGAA 59.957 45.455 0.00 0.00 0.00 3.02
333 371 2.958355 CCCTCAAGGCAAGAAAGAAACA 59.042 45.455 0.00 0.00 0.00 2.83
367 412 0.472044 GAAGGAGAAGCCATCCCTCC 59.528 60.000 0.00 0.00 45.16 4.30
494 558 8.408043 TTTGATAAAAGAAAGCATTCTCTCCA 57.592 30.769 4.40 0.00 45.19 3.86
528 592 7.559486 ACTCTTGCCTTTTTCTTCTTTGATTT 58.441 30.769 0.00 0.00 0.00 2.17
545 609 3.246619 CGACTCAGAAACTACTCTTGCC 58.753 50.000 0.00 0.00 0.00 4.52
546 610 3.057456 TCCGACTCAGAAACTACTCTTGC 60.057 47.826 0.00 0.00 0.00 4.01
547 611 4.728534 CTCCGACTCAGAAACTACTCTTG 58.271 47.826 0.00 0.00 0.00 3.02
549 613 2.750712 GCTCCGACTCAGAAACTACTCT 59.249 50.000 0.00 0.00 0.00 3.24
551 615 2.229302 GTGCTCCGACTCAGAAACTACT 59.771 50.000 0.00 0.00 0.00 2.57
552 616 2.597520 GTGCTCCGACTCAGAAACTAC 58.402 52.381 0.00 0.00 0.00 2.73
553 617 1.199327 CGTGCTCCGACTCAGAAACTA 59.801 52.381 0.00 0.00 39.56 2.24
554 618 0.039074 CGTGCTCCGACTCAGAAACT 60.039 55.000 0.00 0.00 39.56 2.66
555 619 0.039437 TCGTGCTCCGACTCAGAAAC 60.039 55.000 0.00 0.00 41.60 2.78
612 677 1.620822 AGTGCGCTTCCTCCATTTTT 58.379 45.000 9.73 0.00 0.00 1.94
614 679 1.168714 GAAGTGCGCTTCCTCCATTT 58.831 50.000 26.26 0.00 43.95 2.32
616 681 4.625800 GAAGTGCGCTTCCTCCAT 57.374 55.556 26.26 0.00 43.95 3.41
629 694 0.476771 ACGGATGGGGTTTGTGAAGT 59.523 50.000 0.00 0.00 0.00 3.01
633 698 1.544724 AATCACGGATGGGGTTTGTG 58.455 50.000 0.00 0.00 0.00 3.33
659 724 3.299585 CGCGACCGCACTGATTAG 58.700 61.111 14.91 0.00 42.06 1.73
711 776 2.885644 CGAACGATGGACTGCCGG 60.886 66.667 0.00 0.00 36.79 6.13
712 777 2.885644 CCGAACGATGGACTGCCG 60.886 66.667 0.00 0.00 36.79 5.69
713 778 2.511600 CCCGAACGATGGACTGCC 60.512 66.667 0.00 0.00 0.00 4.85
714 779 2.511600 CCCCGAACGATGGACTGC 60.512 66.667 0.00 0.00 0.00 4.40
716 781 0.615544 TTACCCCCGAACGATGGACT 60.616 55.000 0.00 0.00 0.00 3.85
717 782 0.249955 TTTACCCCCGAACGATGGAC 59.750 55.000 0.00 0.00 0.00 4.02
718 783 0.982704 TTTTACCCCCGAACGATGGA 59.017 50.000 0.00 0.00 0.00 3.41
719 784 1.065998 TCTTTTACCCCCGAACGATGG 60.066 52.381 0.00 0.00 0.00 3.51
725 791 6.070938 TGTTTTTCTTTTCTTTTACCCCCGAA 60.071 34.615 0.00 0.00 0.00 4.30
726 792 5.421374 TGTTTTTCTTTTCTTTTACCCCCGA 59.579 36.000 0.00 0.00 0.00 5.14
753 822 3.810896 GGCGATGGGTTTCACGGC 61.811 66.667 0.00 0.00 42.98 5.68
845 918 3.175710 GGAGGTGGTGGTGGTGGT 61.176 66.667 0.00 0.00 0.00 4.16
848 921 3.239253 GACGGAGGTGGTGGTGGT 61.239 66.667 0.00 0.00 0.00 4.16
860 934 2.607631 AAACAAAAGAGACGGACGGA 57.392 45.000 0.00 0.00 0.00 4.69
888 962 2.666098 GCTACCGTGGGTGGATGGT 61.666 63.158 2.02 0.00 36.20 3.55
890 964 2.189521 GGCTACCGTGGGTGGATG 59.810 66.667 2.02 0.00 36.20 3.51
891 965 3.087906 GGGCTACCGTGGGTGGAT 61.088 66.667 2.02 0.00 36.20 3.41
892 966 4.642488 TGGGCTACCGTGGGTGGA 62.642 66.667 2.02 0.00 36.20 4.02
1020 1115 3.485346 GAAAGTGGGTGCGGGGTGA 62.485 63.158 0.00 0.00 0.00 4.02
1021 1116 2.983592 GAAAGTGGGTGCGGGGTG 60.984 66.667 0.00 0.00 0.00 4.61
1022 1117 4.280019 GGAAAGTGGGTGCGGGGT 62.280 66.667 0.00 0.00 0.00 4.95
1075 1182 1.281899 GAAGGAAGCGACGAGAATGG 58.718 55.000 0.00 0.00 0.00 3.16
1076 1183 1.134965 AGGAAGGAAGCGACGAGAATG 60.135 52.381 0.00 0.00 0.00 2.67
1077 1184 1.134965 CAGGAAGGAAGCGACGAGAAT 60.135 52.381 0.00 0.00 0.00 2.40
1078 1185 0.243907 CAGGAAGGAAGCGACGAGAA 59.756 55.000 0.00 0.00 0.00 2.87
1079 1186 1.883732 CAGGAAGGAAGCGACGAGA 59.116 57.895 0.00 0.00 0.00 4.04
1080 1187 1.807573 GCAGGAAGGAAGCGACGAG 60.808 63.158 0.00 0.00 0.00 4.18
1081 1188 2.261671 GCAGGAAGGAAGCGACGA 59.738 61.111 0.00 0.00 0.00 4.20
1134 1249 2.417516 CTGGCGGACCGATCGATT 59.582 61.111 20.50 2.17 39.70 3.34
1140 1272 4.458829 ATCTCCCTGGCGGACCGA 62.459 66.667 20.50 0.00 39.70 4.69
1143 1275 2.764128 TCCATCTCCCTGGCGGAC 60.764 66.667 0.00 0.00 34.86 4.79
1144 1276 2.764128 GTCCATCTCCCTGGCGGA 60.764 66.667 0.00 0.00 38.83 5.54
1146 1278 4.227134 CCGTCCATCTCCCTGGCG 62.227 72.222 0.00 0.00 36.16 5.69
1147 1279 4.554036 GCCGTCCATCTCCCTGGC 62.554 72.222 0.00 0.00 36.16 4.85
1148 1280 4.227134 CGCCGTCCATCTCCCTGG 62.227 72.222 0.00 0.00 37.66 4.45
1149 1281 3.147595 TCGCCGTCCATCTCCCTG 61.148 66.667 0.00 0.00 0.00 4.45
1150 1282 2.280404 TAGTCGCCGTCCATCTCCCT 62.280 60.000 0.00 0.00 0.00 4.20
1151 1283 1.826921 TAGTCGCCGTCCATCTCCC 60.827 63.158 0.00 0.00 0.00 4.30
1152 1284 1.359475 GTAGTCGCCGTCCATCTCC 59.641 63.158 0.00 0.00 0.00 3.71
1153 1285 1.009900 CGTAGTCGCCGTCCATCTC 60.010 63.158 0.00 0.00 0.00 2.75
1154 1286 1.748122 ACGTAGTCGCCGTCCATCT 60.748 57.895 0.00 0.00 29.74 2.90
1224 1356 1.080501 CTCGAAGAAGCCTGCGTCA 60.081 57.895 7.76 0.00 42.14 4.35
1524 1674 6.738453 GCAGAATTTCCTCAACAGCCTAAAAA 60.738 38.462 0.00 0.00 0.00 1.94
1529 1679 2.165998 GCAGAATTTCCTCAACAGCCT 58.834 47.619 0.00 0.00 0.00 4.58
1532 1682 1.135575 GCGGCAGAATTTCCTCAACAG 60.136 52.381 0.00 0.00 0.00 3.16
1546 1696 3.945434 CCAGCTAATGCGCGGCAG 61.945 66.667 8.83 0.00 43.65 4.85
1552 1702 2.356135 ACCAACTAACCAGCTAATGCG 58.644 47.619 0.00 0.00 45.42 4.73
1561 1711 2.250031 TCGGCTAGAACCAACTAACCA 58.750 47.619 0.00 0.00 30.59 3.67
1562 1712 3.056322 TCTTCGGCTAGAACCAACTAACC 60.056 47.826 0.00 0.00 34.66 2.85
1564 1714 4.464951 TCATCTTCGGCTAGAACCAACTAA 59.535 41.667 0.00 0.00 34.66 2.24
1566 1716 2.832129 TCATCTTCGGCTAGAACCAACT 59.168 45.455 0.00 0.00 34.66 3.16
1661 1811 3.256960 TCCACCTTGGGCCTCACC 61.257 66.667 4.53 0.00 38.32 4.02
1889 2046 9.921637 ACAACTTTTCATTCAGACAAGTAAAAA 57.078 25.926 0.00 0.00 44.33 1.94
1899 2056 8.450578 AATGTACTGACAACTTTTCATTCAGA 57.549 30.769 3.99 0.00 39.59 3.27
1948 2109 4.665833 TCTAACCTGTCATATGAACCCG 57.334 45.455 7.07 0.00 0.00 5.28
2113 2279 6.588719 TCACCTACAAATGGGAAATTCTTG 57.411 37.500 0.00 0.00 0.00 3.02
2119 2285 4.746466 ACCAATCACCTACAAATGGGAAA 58.254 39.130 0.00 0.00 32.21 3.13
2209 2375 1.144969 CGTGACTATTTGTGTGCCGT 58.855 50.000 0.00 0.00 0.00 5.68
2212 2378 2.414138 GGTACCGTGACTATTTGTGTGC 59.586 50.000 0.00 0.00 0.00 4.57
2220 2386 6.263617 ACAAACAATTTTGGTACCGTGACTAT 59.736 34.615 7.57 0.00 45.65 2.12
2222 2388 4.399934 ACAAACAATTTTGGTACCGTGACT 59.600 37.500 7.57 0.00 45.65 3.41
2239 2405 3.678056 ATTCACGGAGAGCTACAAACA 57.322 42.857 0.00 0.00 0.00 2.83
2253 2419 7.246311 ACAGCAAAATGATTAGAGAATTCACG 58.754 34.615 8.44 0.00 0.00 4.35
2255 2421 9.985730 AAAACAGCAAAATGATTAGAGAATTCA 57.014 25.926 8.44 0.00 0.00 2.57
2269 2435 9.087424 GAACTGAAAAGAGTAAAACAGCAAAAT 57.913 29.630 0.00 0.00 0.00 1.82
2289 2456 3.326006 AGAGCTTCATGGACAAGAACTGA 59.674 43.478 0.00 0.00 0.00 3.41
2313 2480 2.184167 AAGTTGCGGGTTCACGGTG 61.184 57.895 0.56 0.56 0.00 4.94
2492 2661 1.751927 GCCAGCACTCTCCAATGGG 60.752 63.158 0.00 0.00 0.00 4.00
2513 2682 1.771854 TGGTCACACAATGGGTACACT 59.228 47.619 0.00 0.00 0.00 3.55
2618 2787 1.611519 TTTGAAAAGGGTACTGCGGG 58.388 50.000 0.00 0.00 0.00 6.13
2675 2844 7.020827 TGAAAAGGATCTCAATTGAGTAGGT 57.979 36.000 29.80 16.98 42.60 3.08
2676 2845 7.928307 TTGAAAAGGATCTCAATTGAGTAGG 57.072 36.000 29.80 10.31 42.60 3.18
2773 2944 1.616628 ACCCGCCTCCCAGAAATCT 60.617 57.895 0.00 0.00 0.00 2.40
2871 3042 6.349611 GCAAGCAATGATCCATTATAATCCGT 60.350 38.462 0.00 0.00 32.35 4.69
2938 3109 2.411031 GCGTAAGTCGAACCACACAATG 60.411 50.000 0.00 0.00 42.86 2.82
2939 3110 1.796459 GCGTAAGTCGAACCACACAAT 59.204 47.619 0.00 0.00 42.86 2.71
2978 3149 5.549742 AGAACTCAATCTCTGGATGATCC 57.450 43.478 4.05 4.05 36.96 3.36
3100 3271 5.488262 TGATCAAATCAGTTCTCAGTCCA 57.512 39.130 0.00 0.00 33.59 4.02
3167 3338 5.745312 TCAGCCAGAATTCTTTCTACTGA 57.255 39.130 4.86 11.07 44.24 3.41
3170 3341 6.314152 GGTAGTTCAGCCAGAATTCTTTCTAC 59.686 42.308 4.86 9.96 40.28 2.59
3181 3352 1.833630 CAGGATGGTAGTTCAGCCAGA 59.166 52.381 1.99 0.00 44.98 3.86
3183 3354 0.253044 GCAGGATGGTAGTTCAGCCA 59.747 55.000 1.99 0.00 44.98 4.75
3316 3490 2.567615 AGTATCGTCCCAATATCTGCCC 59.432 50.000 0.00 0.00 0.00 5.36
3362 3539 3.130164 CCATAATTGCCATTTCCACGACA 59.870 43.478 0.00 0.00 0.00 4.35
3430 3700 6.656632 TCATTGGGCAGTAAAACAATACAA 57.343 33.333 0.00 0.00 32.71 2.41
3464 3734 6.001460 AGCAAGCACCACTTAACTGTAATTA 58.999 36.000 0.00 0.00 36.04 1.40
3504 3774 2.337583 TGATAAGTCACTGTTCGCTGC 58.662 47.619 0.00 0.00 0.00 5.25
3543 3813 3.441496 AAGTACCGAAACGAGTGAACA 57.559 42.857 0.00 0.00 0.00 3.18
3552 3822 4.031426 CGAGCAATCAGTAAGTACCGAAAC 59.969 45.833 0.00 0.00 0.00 2.78
3569 3839 0.592637 CAACTGTGATTGGCGAGCAA 59.407 50.000 0.00 0.00 0.00 3.91
3586 3856 3.325870 CTGGCGATAAGTCAGTGTTCAA 58.674 45.455 0.00 0.00 46.99 2.69
3670 3949 6.670990 ACGCGTCTATATACTTTCAATTCG 57.329 37.500 5.58 0.00 0.00 3.34
3710 3989 5.664457 AGTCTTAATACGGACCTAAATGGGT 59.336 40.000 0.00 0.00 43.07 4.51
3718 3997 9.901172 ATTTCAAAATAGTCTTAATACGGACCT 57.099 29.630 0.00 0.00 33.39 3.85
3730 4009 9.099454 GACAGTTCGGATATTTCAAAATAGTCT 57.901 33.333 2.05 0.00 34.62 3.24
3731 4010 9.099454 AGACAGTTCGGATATTTCAAAATAGTC 57.901 33.333 2.05 0.00 34.62 2.59
3732 4011 9.449719 AAGACAGTTCGGATATTTCAAAATAGT 57.550 29.630 2.05 0.00 34.62 2.12
3753 4032 3.446161 CCTCCGTCCACTGTTATAAGACA 59.554 47.826 3.57 0.00 0.00 3.41
3760 4039 0.113776 ACTCCCTCCGTCCACTGTTA 59.886 55.000 0.00 0.00 0.00 2.41
3768 4047 2.617774 GTCACATACTACTCCCTCCGTC 59.382 54.545 0.00 0.00 0.00 4.79
3786 4067 1.168407 GCTCCAACAGCTGCAAGTCA 61.168 55.000 15.27 0.00 45.83 3.41
3804 4091 7.487189 CAGAGTTTGTGATGATGATTAAAAGGC 59.513 37.037 0.00 0.00 0.00 4.35
3822 4118 4.520111 TGGTGATGGTGAAATCAGAGTTTG 59.480 41.667 0.00 0.00 37.24 2.93
3830 4126 3.355378 TGGTGATGGTGATGGTGAAATC 58.645 45.455 0.00 0.00 0.00 2.17
3840 4136 2.308275 TGAATGGTGATGGTGATGGTGA 59.692 45.455 0.00 0.00 0.00 4.02
3841 4137 2.424601 GTGAATGGTGATGGTGATGGTG 59.575 50.000 0.00 0.00 0.00 4.17
3842 4138 2.621407 GGTGAATGGTGATGGTGATGGT 60.621 50.000 0.00 0.00 0.00 3.55
3843 4139 2.026641 GGTGAATGGTGATGGTGATGG 58.973 52.381 0.00 0.00 0.00 3.51
3844 4140 2.686405 CTGGTGAATGGTGATGGTGATG 59.314 50.000 0.00 0.00 0.00 3.07
3845 4141 2.947243 GCTGGTGAATGGTGATGGTGAT 60.947 50.000 0.00 0.00 0.00 3.06
3846 4142 1.614051 GCTGGTGAATGGTGATGGTGA 60.614 52.381 0.00 0.00 0.00 4.02
3847 4143 0.813184 GCTGGTGAATGGTGATGGTG 59.187 55.000 0.00 0.00 0.00 4.17
3848 4144 0.405198 TGCTGGTGAATGGTGATGGT 59.595 50.000 0.00 0.00 0.00 3.55
3849 4145 1.100510 CTGCTGGTGAATGGTGATGG 58.899 55.000 0.00 0.00 0.00 3.51
3850 4146 0.454600 GCTGCTGGTGAATGGTGATG 59.545 55.000 0.00 0.00 0.00 3.07
3851 4147 0.038599 TGCTGCTGGTGAATGGTGAT 59.961 50.000 0.00 0.00 0.00 3.06
3852 4148 0.038599 ATGCTGCTGGTGAATGGTGA 59.961 50.000 0.00 0.00 0.00 4.02
3853 4149 0.892755 AATGCTGCTGGTGAATGGTG 59.107 50.000 0.00 0.00 0.00 4.17
3854 4150 1.180029 GAATGCTGCTGGTGAATGGT 58.820 50.000 0.00 0.00 0.00 3.55
3855 4151 0.458669 GGAATGCTGCTGGTGAATGG 59.541 55.000 0.00 0.00 0.00 3.16
3856 4152 1.471119 AGGAATGCTGCTGGTGAATG 58.529 50.000 0.00 0.00 0.00 2.67
3857 4153 2.097825 GAAGGAATGCTGCTGGTGAAT 58.902 47.619 0.00 0.00 0.00 2.57
3858 4154 1.074405 AGAAGGAATGCTGCTGGTGAA 59.926 47.619 0.00 0.00 0.00 3.18
3882 4195 2.234661 GTGATGTGGAGTCCATCTCACA 59.765 50.000 32.07 20.90 42.28 3.58
3883 4196 2.234661 TGTGATGTGGAGTCCATCTCAC 59.765 50.000 31.23 31.23 44.40 3.51
3930 4249 6.618811 CACTAACTAGTGGTAACTGGTACTG 58.381 44.000 8.73 0.00 46.46 2.74
3951 4273 2.110835 TGCACCACGACATGCACT 59.889 55.556 7.89 0.00 46.63 4.40
4089 4412 9.974980 CTTAAACTTTATGGTTGCCTTTTCTTA 57.025 29.630 0.00 0.00 0.00 2.10
4090 4413 8.482943 ACTTAAACTTTATGGTTGCCTTTTCTT 58.517 29.630 0.88 0.00 0.00 2.52
4091 4414 8.018537 ACTTAAACTTTATGGTTGCCTTTTCT 57.981 30.769 0.88 0.00 0.00 2.52
4092 4415 8.657074 AACTTAAACTTTATGGTTGCCTTTTC 57.343 30.769 0.88 0.00 0.00 2.29
4093 4416 7.713507 GGAACTTAAACTTTATGGTTGCCTTTT 59.286 33.333 5.61 0.00 0.00 2.27
4094 4417 7.070696 AGGAACTTAAACTTTATGGTTGCCTTT 59.929 33.333 11.85 0.00 27.25 3.11
4095 4418 6.553476 AGGAACTTAAACTTTATGGTTGCCTT 59.447 34.615 11.85 0.00 27.25 4.35
4096 4419 6.075315 AGGAACTTAAACTTTATGGTTGCCT 58.925 36.000 11.85 10.68 27.25 4.75
4097 4420 6.340962 AGGAACTTAAACTTTATGGTTGCC 57.659 37.500 11.85 9.46 27.25 4.52
4098 4421 8.107399 AGTAGGAACTTAAACTTTATGGTTGC 57.893 34.615 9.39 9.39 41.75 4.17
4099 4422 9.280174 TGAGTAGGAACTTAAACTTTATGGTTG 57.720 33.333 5.61 0.00 41.75 3.77
4100 4423 9.503399 CTGAGTAGGAACTTAAACTTTATGGTT 57.497 33.333 0.88 1.55 41.75 3.67
4117 4440 4.784268 TCCAAACAGGGCCTGAGTAGGA 62.784 54.545 38.99 31.15 41.77 2.94
4118 4441 2.455472 TCCAAACAGGGCCTGAGTAGG 61.455 57.143 38.99 29.66 41.03 3.18
4119 4442 0.984230 TCCAAACAGGGCCTGAGTAG 59.016 55.000 38.99 23.10 38.24 2.57
4120 4443 1.073284 GTTCCAAACAGGGCCTGAGTA 59.927 52.381 38.99 16.38 38.24 2.59
4121 4444 0.178990 GTTCCAAACAGGGCCTGAGT 60.179 55.000 38.99 23.06 38.24 3.41
4122 4445 1.237285 CGTTCCAAACAGGGCCTGAG 61.237 60.000 38.99 25.46 38.24 3.35
4123 4446 1.228124 CGTTCCAAACAGGGCCTGA 60.228 57.895 38.99 14.57 38.24 3.86
4124 4447 2.919494 GCGTTCCAAACAGGGCCTG 61.919 63.158 31.62 31.62 38.24 4.85
4125 4448 2.597510 GCGTTCCAAACAGGGCCT 60.598 61.111 0.00 0.00 38.24 5.19
4126 4449 2.909965 TGCGTTCCAAACAGGGCC 60.910 61.111 0.00 0.00 38.24 5.80
4127 4450 2.644992 CTGCGTTCCAAACAGGGC 59.355 61.111 0.00 0.00 38.24 5.19
4128 4451 3.354678 CCTGCGTTCCAAACAGGG 58.645 61.111 0.19 0.00 45.97 4.45
4130 4453 1.308998 AGTTCCTGCGTTCCAAACAG 58.691 50.000 0.00 0.00 0.00 3.16
4131 4454 1.757682 AAGTTCCTGCGTTCCAAACA 58.242 45.000 0.00 0.00 0.00 2.83
4132 4455 2.543031 GGAAAGTTCCTGCGTTCCAAAC 60.543 50.000 2.65 0.00 43.37 2.93
4133 4456 1.679153 GGAAAGTTCCTGCGTTCCAAA 59.321 47.619 2.65 0.00 43.37 3.28
4134 4457 1.314730 GGAAAGTTCCTGCGTTCCAA 58.685 50.000 2.65 0.00 43.37 3.53
4135 4458 0.536460 GGGAAAGTTCCTGCGTTCCA 60.536 55.000 9.88 0.00 44.89 3.53
4136 4459 0.536460 TGGGAAAGTTCCTGCGTTCC 60.536 55.000 9.88 0.00 46.72 3.62
4137 4460 0.591659 GTGGGAAAGTTCCTGCGTTC 59.408 55.000 9.88 0.00 46.72 3.95
4138 4461 1.164041 CGTGGGAAAGTTCCTGCGTT 61.164 55.000 9.88 0.00 46.72 4.84
4139 4462 1.597027 CGTGGGAAAGTTCCTGCGT 60.597 57.895 9.88 0.00 46.72 5.24
4140 4463 2.325082 CCGTGGGAAAGTTCCTGCG 61.325 63.158 9.88 12.98 46.72 5.18
4141 4464 0.035739 TACCGTGGGAAAGTTCCTGC 59.964 55.000 9.88 2.90 46.72 4.85
4142 4465 2.551032 GTTTACCGTGGGAAAGTTCCTG 59.449 50.000 9.88 1.20 46.72 3.86
4143 4466 2.173143 TGTTTACCGTGGGAAAGTTCCT 59.827 45.455 9.88 0.00 46.72 3.36
4144 4467 2.574450 TGTTTACCGTGGGAAAGTTCC 58.426 47.619 0.00 1.10 46.82 3.62
4145 4468 4.142425 TGTTTGTTTACCGTGGGAAAGTTC 60.142 41.667 0.00 0.00 0.00 3.01
4146 4469 3.762823 TGTTTGTTTACCGTGGGAAAGTT 59.237 39.130 0.00 0.00 0.00 2.66
4147 4470 3.354467 TGTTTGTTTACCGTGGGAAAGT 58.646 40.909 0.00 0.00 0.00 2.66
4148 4471 4.373348 TTGTTTGTTTACCGTGGGAAAG 57.627 40.909 0.00 0.00 0.00 2.62
4149 4472 5.340439 AATTGTTTGTTTACCGTGGGAAA 57.660 34.783 0.00 0.00 0.00 3.13
4150 4473 5.340439 AAATTGTTTGTTTACCGTGGGAA 57.660 34.783 0.00 0.00 0.00 3.97
4151 4474 5.221204 GGTAAATTGTTTGTTTACCGTGGGA 60.221 40.000 10.86 0.00 46.36 4.37
4152 4475 4.983538 GGTAAATTGTTTGTTTACCGTGGG 59.016 41.667 10.86 0.00 46.36 4.61
4158 4481 9.400638 TCGATTCATGGTAAATTGTTTGTTTAC 57.599 29.630 0.00 0.00 39.91 2.01
4159 4482 9.400638 GTCGATTCATGGTAAATTGTTTGTTTA 57.599 29.630 0.00 0.00 0.00 2.01
4160 4483 7.383843 GGTCGATTCATGGTAAATTGTTTGTTT 59.616 33.333 0.00 0.00 0.00 2.83
4161 4484 6.866248 GGTCGATTCATGGTAAATTGTTTGTT 59.134 34.615 0.00 0.00 0.00 2.83
4162 4485 6.386654 GGTCGATTCATGGTAAATTGTTTGT 58.613 36.000 0.00 0.00 0.00 2.83
4163 4486 5.511377 CGGTCGATTCATGGTAAATTGTTTG 59.489 40.000 0.00 0.00 0.00 2.93
4164 4487 5.182380 ACGGTCGATTCATGGTAAATTGTTT 59.818 36.000 0.00 0.00 0.00 2.83
4165 4488 4.698304 ACGGTCGATTCATGGTAAATTGTT 59.302 37.500 0.00 0.00 0.00 2.83
4166 4489 4.094294 CACGGTCGATTCATGGTAAATTGT 59.906 41.667 0.00 0.00 0.00 2.71
4167 4490 4.094294 ACACGGTCGATTCATGGTAAATTG 59.906 41.667 0.00 0.00 0.00 2.32
4168 4491 4.258543 ACACGGTCGATTCATGGTAAATT 58.741 39.130 0.00 0.00 0.00 1.82
4169 4492 3.869065 ACACGGTCGATTCATGGTAAAT 58.131 40.909 0.00 0.00 0.00 1.40
4170 4493 3.322211 ACACGGTCGATTCATGGTAAA 57.678 42.857 0.00 0.00 0.00 2.01
4171 4494 3.322211 AACACGGTCGATTCATGGTAA 57.678 42.857 0.00 0.00 0.00 2.85
4172 4495 3.056393 AGAAACACGGTCGATTCATGGTA 60.056 43.478 0.00 0.00 0.00 3.25
4173 4496 2.073816 GAAACACGGTCGATTCATGGT 58.926 47.619 0.00 0.00 0.00 3.55
4174 4497 2.346803 AGAAACACGGTCGATTCATGG 58.653 47.619 0.00 0.00 0.00 3.66
4175 4498 3.254060 AGAGAAACACGGTCGATTCATG 58.746 45.455 0.00 0.00 0.00 3.07
4176 4499 3.594603 AGAGAAACACGGTCGATTCAT 57.405 42.857 0.00 0.00 0.00 2.57
4177 4500 3.005472 AGAAGAGAAACACGGTCGATTCA 59.995 43.478 0.00 0.00 0.00 2.57
4178 4501 3.576648 AGAAGAGAAACACGGTCGATTC 58.423 45.455 0.00 0.00 0.00 2.52
4179 4502 3.005472 TGAGAAGAGAAACACGGTCGATT 59.995 43.478 0.00 0.00 0.00 3.34
4180 4503 2.557056 TGAGAAGAGAAACACGGTCGAT 59.443 45.455 0.00 0.00 0.00 3.59
4181 4504 1.951602 TGAGAAGAGAAACACGGTCGA 59.048 47.619 0.00 0.00 0.00 4.20
4182 4505 2.052157 GTGAGAAGAGAAACACGGTCG 58.948 52.381 0.00 0.00 0.00 4.79
4183 4506 2.405172 GGTGAGAAGAGAAACACGGTC 58.595 52.381 0.00 0.00 34.59 4.79
4184 4507 1.269621 CGGTGAGAAGAGAAACACGGT 60.270 52.381 0.00 0.00 34.59 4.83
4185 4508 1.419374 CGGTGAGAAGAGAAACACGG 58.581 55.000 0.00 0.00 34.59 4.94
4186 4509 1.000607 TCCGGTGAGAAGAGAAACACG 60.001 52.381 0.00 0.00 34.59 4.49
4187 4510 2.678324 CTCCGGTGAGAAGAGAAACAC 58.322 52.381 0.00 0.00 41.42 3.32
4188 4511 1.000955 GCTCCGGTGAGAAGAGAAACA 59.999 52.381 7.92 0.00 41.42 2.83
4189 4512 1.000955 TGCTCCGGTGAGAAGAGAAAC 59.999 52.381 7.92 0.00 41.42 2.78
4190 4513 1.000955 GTGCTCCGGTGAGAAGAGAAA 59.999 52.381 7.92 0.00 41.42 2.52
4191 4514 0.603569 GTGCTCCGGTGAGAAGAGAA 59.396 55.000 7.92 0.00 41.42 2.87
4192 4515 1.587043 CGTGCTCCGGTGAGAAGAGA 61.587 60.000 7.92 0.00 41.42 3.10
4193 4516 1.153939 CGTGCTCCGGTGAGAAGAG 60.154 63.158 7.92 0.00 41.42 2.85
4194 4517 2.962569 CGTGCTCCGGTGAGAAGA 59.037 61.111 7.92 0.00 41.42 2.87
4203 4526 2.813908 GTTAGCCACCGTGCTCCG 60.814 66.667 0.00 0.00 41.68 4.63
4204 4527 2.436115 GGTTAGCCACCGTGCTCC 60.436 66.667 0.00 0.00 41.68 4.70
4211 4534 1.684734 TCGGAGAGGGTTAGCCACC 60.685 63.158 2.44 2.41 46.46 4.61
4212 4535 1.516423 GTCGGAGAGGGTTAGCCAC 59.484 63.158 2.44 0.00 36.95 5.01
4213 4536 1.684734 GGTCGGAGAGGGTTAGCCA 60.685 63.158 2.44 0.00 36.95 4.75
4214 4537 1.381463 AGGTCGGAGAGGGTTAGCC 60.381 63.158 0.00 0.00 36.95 3.93
4215 4538 0.396001 AGAGGTCGGAGAGGGTTAGC 60.396 60.000 0.00 0.00 36.95 3.09
4216 4539 1.394618 CAGAGGTCGGAGAGGGTTAG 58.605 60.000 0.00 0.00 36.95 2.34
4217 4540 0.683504 GCAGAGGTCGGAGAGGGTTA 60.684 60.000 0.00 0.00 36.95 2.85
4218 4541 1.985116 GCAGAGGTCGGAGAGGGTT 60.985 63.158 0.00 0.00 36.95 4.11
4219 4542 2.363147 GCAGAGGTCGGAGAGGGT 60.363 66.667 0.00 0.00 36.95 4.34
4220 4543 3.522731 CGCAGAGGTCGGAGAGGG 61.523 72.222 0.00 0.00 36.95 4.30
4221 4544 2.752238 ACGCAGAGGTCGGAGAGG 60.752 66.667 0.00 0.00 36.95 3.69
4222 4545 2.795297 GACGCAGAGGTCGGAGAG 59.205 66.667 0.00 0.00 36.95 3.20
4228 4551 2.711922 ATCACCCGACGCAGAGGTC 61.712 63.158 0.00 0.00 0.00 3.85
4229 4552 2.680352 ATCACCCGACGCAGAGGT 60.680 61.111 0.00 0.00 0.00 3.85
4230 4553 2.202797 CATCACCCGACGCAGAGG 60.203 66.667 0.00 0.00 0.00 3.69
4231 4554 2.887568 GCATCACCCGACGCAGAG 60.888 66.667 0.00 0.00 28.52 3.35
4232 4555 3.690280 TGCATCACCCGACGCAGA 61.690 61.111 0.00 0.00 34.94 4.26
4233 4556 3.490759 GTGCATCACCCGACGCAG 61.491 66.667 0.00 0.00 41.80 5.18
4234 4557 4.306967 TGTGCATCACCCGACGCA 62.307 61.111 0.00 0.00 38.18 5.24
4235 4558 3.788766 GTGTGCATCACCCGACGC 61.789 66.667 7.86 0.00 40.84 5.19
4236 4559 2.356913 TGTGTGCATCACCCGACG 60.357 61.111 14.23 0.00 45.61 5.12
4237 4560 2.680913 GCTGTGTGCATCACCCGAC 61.681 63.158 14.23 1.65 45.61 4.79
4238 4561 2.358615 GCTGTGTGCATCACCCGA 60.359 61.111 14.23 0.00 45.61 5.14
4239 4562 3.434319 GGCTGTGTGCATCACCCG 61.434 66.667 14.23 8.39 45.61 5.28
4240 4563 1.462731 TTTGGCTGTGTGCATCACCC 61.463 55.000 14.23 10.56 45.61 4.61
4241 4564 0.038892 CTTTGGCTGTGTGCATCACC 60.039 55.000 14.23 10.04 45.61 4.02
4242 4565 0.953727 TCTTTGGCTGTGTGCATCAC 59.046 50.000 11.13 11.13 46.31 3.06
4243 4566 1.689984 TTCTTTGGCTGTGTGCATCA 58.310 45.000 0.00 0.00 45.15 3.07
4244 4567 2.798976 TTTCTTTGGCTGTGTGCATC 57.201 45.000 0.00 0.00 45.15 3.91
4245 4568 3.756933 AATTTCTTTGGCTGTGTGCAT 57.243 38.095 0.00 0.00 45.15 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.