Multiple sequence alignment - TraesCS5B01G278200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G278200 chr5B 100.000 2795 0 0 1 2795 464143532 464146326 0.000000e+00 5162
1 TraesCS5B01G278200 chr5B 86.646 659 72 11 1001 1645 464171030 464171686 0.000000e+00 715
2 TraesCS5B01G278200 chr5B 86.786 613 67 8 1021 1620 464195332 464195943 0.000000e+00 671
3 TraesCS5B01G278200 chr5B 96.667 120 3 1 264 382 591554074 591553955 6.110000e-47 198
4 TraesCS5B01G278200 chr5D 95.825 1581 47 14 605 2172 386209383 386210957 0.000000e+00 2536
5 TraesCS5B01G278200 chr5D 86.495 659 73 11 1001 1645 386512909 386513565 0.000000e+00 710
6 TraesCS5B01G278200 chr5D 86.656 637 63 13 1001 1620 386589496 386590127 0.000000e+00 686
7 TraesCS5B01G278200 chr5D 93.468 444 22 4 2355 2795 386212670 386213109 0.000000e+00 652
8 TraesCS5B01G278200 chr5D 95.763 118 5 0 271 388 293988811 293988694 1.020000e-44 191
9 TraesCS5B01G278200 chr5D 96.552 87 3 0 2241 2327 386212523 386212609 8.070000e-31 145
10 TraesCS5B01G278200 chr5D 90.789 76 7 0 2174 2249 386210985 386211060 4.930000e-18 102
11 TraesCS5B01G278200 chr5A 92.414 1595 81 21 469 2046 488037930 488039501 0.000000e+00 2239
12 TraesCS5B01G278200 chr5A 87.559 635 60 11 1001 1620 488050954 488051584 0.000000e+00 717
13 TraesCS5B01G278200 chr5A 86.735 490 47 5 1162 1645 488047430 488047907 1.910000e-146 529
14 TraesCS5B01G278200 chr5A 90.997 311 21 4 2349 2658 488040420 488040724 2.000000e-111 412
15 TraesCS5B01G278200 chr5A 96.313 217 7 1 2037 2253 488039840 488040055 3.420000e-94 355
16 TraesCS5B01G278200 chr5A 96.040 101 4 0 2250 2350 488040158 488040258 6.190000e-37 165
17 TraesCS5B01G278200 chr6D 95.935 123 3 2 276 397 3196488 3196367 6.110000e-47 198
18 TraesCS5B01G278200 chr2B 99.074 108 1 0 276 383 691451432 691451325 7.900000e-46 195
19 TraesCS5B01G278200 chr4D 95.763 118 5 0 271 388 60634464 60634347 1.020000e-44 191
20 TraesCS5B01G278200 chr4A 95.798 119 4 1 265 382 14117930 14118048 1.020000e-44 191
21 TraesCS5B01G278200 chr3D 95.763 118 5 0 271 388 336616804 336616921 1.020000e-44 191
22 TraesCS5B01G278200 chr1D 96.522 115 4 0 268 382 169367424 169367538 1.020000e-44 191
23 TraesCS5B01G278200 chr2A 94.309 123 7 0 260 382 735006735 735006857 3.680000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G278200 chr5B 464143532 464146326 2794 False 5162.00 5162 100.0000 1 2795 1 chr5B.!!$F1 2794
1 TraesCS5B01G278200 chr5B 464171030 464171686 656 False 715.00 715 86.6460 1001 1645 1 chr5B.!!$F2 644
2 TraesCS5B01G278200 chr5B 464195332 464195943 611 False 671.00 671 86.7860 1021 1620 1 chr5B.!!$F3 599
3 TraesCS5B01G278200 chr5D 386209383 386213109 3726 False 858.75 2536 94.1585 605 2795 4 chr5D.!!$F3 2190
4 TraesCS5B01G278200 chr5D 386512909 386513565 656 False 710.00 710 86.4950 1001 1645 1 chr5D.!!$F1 644
5 TraesCS5B01G278200 chr5D 386589496 386590127 631 False 686.00 686 86.6560 1001 1620 1 chr5D.!!$F2 619
6 TraesCS5B01G278200 chr5A 488037930 488040724 2794 False 792.75 2239 93.9410 469 2658 4 chr5A.!!$F1 2189
7 TraesCS5B01G278200 chr5A 488047430 488051584 4154 False 623.00 717 87.1470 1001 1645 2 chr5A.!!$F2 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.031043 TTGGACGAAAGACGAGCGAA 59.969 50.0 0.0 0.0 45.77 4.70 F
262 263 0.662374 TGGACGAAAGACGAGCGAAC 60.662 55.0 0.0 0.0 45.77 3.95 F
264 265 0.723790 GACGAAAGACGAGCGAACGA 60.724 55.0 8.5 0.0 45.77 3.85 F
269 270 0.850856 AAGACGAGCGAACGACAAAC 59.149 50.0 8.5 0.0 37.03 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1096 3627 0.681733 AACTTCTCGCTCTTGCAGGA 59.318 50.000 0.00 0.0 39.64 3.86 R
1167 3698 2.125147 TATGTCCAGTGCAGCGCC 60.125 61.111 2.29 0.0 0.00 6.53 R
1747 4284 2.231215 GCCAGAAGCACGATCAGTAT 57.769 50.000 0.00 0.0 42.97 2.12 R
1979 4524 2.443255 AGAGGTTTGACCCAACACATCT 59.557 45.455 0.00 0.0 39.75 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.870075 AATATAAATGCCTCTGAGATTTACCC 57.130 34.615 6.17 0.00 0.00 3.69
29 30 2.918712 ATGCCTCTGAGATTTACCCG 57.081 50.000 6.17 0.00 0.00 5.28
30 31 1.568504 TGCCTCTGAGATTTACCCGT 58.431 50.000 6.17 0.00 0.00 5.28
31 32 1.480954 TGCCTCTGAGATTTACCCGTC 59.519 52.381 6.17 0.00 0.00 4.79
33 34 2.108168 CCTCTGAGATTTACCCGTCCA 58.892 52.381 6.17 0.00 0.00 4.02
34 35 2.159085 CCTCTGAGATTTACCCGTCCAC 60.159 54.545 6.17 0.00 0.00 4.02
35 36 2.496070 CTCTGAGATTTACCCGTCCACA 59.504 50.000 0.00 0.00 0.00 4.17
36 37 3.104512 TCTGAGATTTACCCGTCCACAT 58.895 45.455 0.00 0.00 0.00 3.21
38 39 3.605634 TGAGATTTACCCGTCCACATTG 58.394 45.455 0.00 0.00 0.00 2.82
39 40 3.262151 TGAGATTTACCCGTCCACATTGA 59.738 43.478 0.00 0.00 0.00 2.57
41 42 4.199310 AGATTTACCCGTCCACATTGATG 58.801 43.478 0.00 0.00 0.00 3.07
42 43 3.426787 TTTACCCGTCCACATTGATGT 57.573 42.857 0.00 0.00 42.84 3.06
153 154 7.585579 TTTGGTTTAGGTTTAGGGTTTAGTG 57.414 36.000 0.00 0.00 0.00 2.74
154 155 5.072055 TGGTTTAGGTTTAGGGTTTAGTGC 58.928 41.667 0.00 0.00 0.00 4.40
155 156 4.154737 GGTTTAGGTTTAGGGTTTAGTGCG 59.845 45.833 0.00 0.00 0.00 5.34
156 157 4.888326 TTAGGTTTAGGGTTTAGTGCGA 57.112 40.909 0.00 0.00 0.00 5.10
157 158 3.994931 AGGTTTAGGGTTTAGTGCGAT 57.005 42.857 0.00 0.00 0.00 4.58
158 159 4.296621 AGGTTTAGGGTTTAGTGCGATT 57.703 40.909 0.00 0.00 0.00 3.34
161 162 4.456566 GGTTTAGGGTTTAGTGCGATTGAA 59.543 41.667 0.00 0.00 0.00 2.69
162 163 5.391629 GGTTTAGGGTTTAGTGCGATTGAAG 60.392 44.000 0.00 0.00 0.00 3.02
163 164 2.084546 AGGGTTTAGTGCGATTGAAGC 58.915 47.619 0.00 0.00 0.00 3.86
164 165 1.810151 GGGTTTAGTGCGATTGAAGCA 59.190 47.619 0.00 0.00 42.99 3.91
165 166 2.159517 GGGTTTAGTGCGATTGAAGCAG 60.160 50.000 0.00 0.00 46.10 4.24
167 168 3.058224 GGTTTAGTGCGATTGAAGCAGTT 60.058 43.478 3.80 0.00 45.00 3.16
169 170 2.175878 AGTGCGATTGAAGCAGTTCT 57.824 45.000 0.00 0.00 45.00 3.01
170 171 2.498167 AGTGCGATTGAAGCAGTTCTT 58.502 42.857 0.00 0.00 45.00 2.52
172 173 1.536766 TGCGATTGAAGCAGTTCTTGG 59.463 47.619 0.00 0.00 40.01 3.61
173 174 1.135575 GCGATTGAAGCAGTTCTTGGG 60.136 52.381 0.00 0.00 34.56 4.12
174 175 1.470098 CGATTGAAGCAGTTCTTGGGG 59.530 52.381 0.00 0.00 34.56 4.96
175 176 2.795329 GATTGAAGCAGTTCTTGGGGA 58.205 47.619 0.00 0.00 34.56 4.81
176 177 2.746279 TTGAAGCAGTTCTTGGGGAA 57.254 45.000 0.00 0.00 34.56 3.97
177 178 2.746279 TGAAGCAGTTCTTGGGGAAA 57.254 45.000 0.00 0.00 35.51 3.13
179 180 1.889170 GAAGCAGTTCTTGGGGAAAGG 59.111 52.381 0.00 0.00 36.46 3.11
180 181 1.149101 AGCAGTTCTTGGGGAAAGGA 58.851 50.000 0.00 0.00 36.46 3.36
181 182 1.713078 AGCAGTTCTTGGGGAAAGGAT 59.287 47.619 0.00 0.00 36.46 3.24
182 183 1.821136 GCAGTTCTTGGGGAAAGGATG 59.179 52.381 0.00 0.00 36.46 3.51
183 184 2.555227 GCAGTTCTTGGGGAAAGGATGA 60.555 50.000 0.00 0.00 36.46 2.92
184 185 3.350833 CAGTTCTTGGGGAAAGGATGAG 58.649 50.000 0.00 0.00 36.46 2.90
185 186 3.009473 CAGTTCTTGGGGAAAGGATGAGA 59.991 47.826 0.00 0.00 36.46 3.27
186 187 3.657727 AGTTCTTGGGGAAAGGATGAGAA 59.342 43.478 0.00 0.00 36.46 2.87
187 188 4.106341 AGTTCTTGGGGAAAGGATGAGAAA 59.894 41.667 0.00 0.00 36.46 2.52
190 191 2.790433 TGGGGAAAGGATGAGAAAACG 58.210 47.619 0.00 0.00 0.00 3.60
192 193 3.010420 GGGGAAAGGATGAGAAAACGAG 58.990 50.000 0.00 0.00 0.00 4.18
193 194 3.010420 GGGAAAGGATGAGAAAACGAGG 58.990 50.000 0.00 0.00 0.00 4.63
194 195 3.307480 GGGAAAGGATGAGAAAACGAGGA 60.307 47.826 0.00 0.00 0.00 3.71
195 196 4.518249 GGAAAGGATGAGAAAACGAGGAT 58.482 43.478 0.00 0.00 0.00 3.24
196 197 4.333926 GGAAAGGATGAGAAAACGAGGATG 59.666 45.833 0.00 0.00 0.00 3.51
197 198 4.559862 AAGGATGAGAAAACGAGGATGT 57.440 40.909 0.00 0.00 0.00 3.06
198 199 3.866651 AGGATGAGAAAACGAGGATGTG 58.133 45.455 0.00 0.00 0.00 3.21
199 200 3.515502 AGGATGAGAAAACGAGGATGTGA 59.484 43.478 0.00 0.00 0.00 3.58
200 201 4.020218 AGGATGAGAAAACGAGGATGTGAA 60.020 41.667 0.00 0.00 0.00 3.18
201 202 4.695455 GGATGAGAAAACGAGGATGTGAAA 59.305 41.667 0.00 0.00 0.00 2.69
202 203 5.181245 GGATGAGAAAACGAGGATGTGAAAA 59.819 40.000 0.00 0.00 0.00 2.29
227 228 4.469469 AAAATGGAAAGAGGGAGGTGAA 57.531 40.909 0.00 0.00 0.00 3.18
228 229 4.469469 AAATGGAAAGAGGGAGGTGAAA 57.531 40.909 0.00 0.00 0.00 2.69
229 230 4.469469 AATGGAAAGAGGGAGGTGAAAA 57.531 40.909 0.00 0.00 0.00 2.29
231 232 2.783510 TGGAAAGAGGGAGGTGAAAACT 59.216 45.455 0.00 0.00 0.00 2.66
232 233 3.204382 TGGAAAGAGGGAGGTGAAAACTT 59.796 43.478 0.00 0.00 0.00 2.66
234 235 5.103855 TGGAAAGAGGGAGGTGAAAACTTTA 60.104 40.000 0.00 0.00 0.00 1.85
235 236 5.831525 GGAAAGAGGGAGGTGAAAACTTTAA 59.168 40.000 0.00 0.00 0.00 1.52
236 237 6.016192 GGAAAGAGGGAGGTGAAAACTTTAAG 60.016 42.308 0.00 0.00 0.00 1.85
237 238 5.648330 AGAGGGAGGTGAAAACTTTAAGT 57.352 39.130 0.00 0.00 0.00 2.24
238 239 6.758806 AGAGGGAGGTGAAAACTTTAAGTA 57.241 37.500 0.00 0.00 0.00 2.24
239 240 7.145474 AGAGGGAGGTGAAAACTTTAAGTAA 57.855 36.000 0.00 0.00 0.00 2.24
240 241 7.225011 AGAGGGAGGTGAAAACTTTAAGTAAG 58.775 38.462 0.00 0.00 39.87 2.34
242 243 6.066690 GGGAGGTGAAAACTTTAAGTAAGGT 58.933 40.000 0.00 0.00 38.23 3.50
243 244 6.548622 GGGAGGTGAAAACTTTAAGTAAGGTT 59.451 38.462 0.00 0.00 45.71 3.50
245 246 7.342769 AGGTGAAAACTTTAAGTAAGGTTGG 57.657 36.000 0.00 0.00 42.97 3.77
246 247 7.120716 AGGTGAAAACTTTAAGTAAGGTTGGA 58.879 34.615 0.00 0.00 42.97 3.53
247 248 7.067859 AGGTGAAAACTTTAAGTAAGGTTGGAC 59.932 37.037 0.00 0.00 42.97 4.02
248 249 6.908820 GTGAAAACTTTAAGTAAGGTTGGACG 59.091 38.462 0.00 0.00 42.97 4.79
249 250 6.822676 TGAAAACTTTAAGTAAGGTTGGACGA 59.177 34.615 0.00 0.00 42.97 4.20
250 251 7.336427 TGAAAACTTTAAGTAAGGTTGGACGAA 59.664 33.333 0.00 0.00 42.97 3.85
253 254 6.585416 ACTTTAAGTAAGGTTGGACGAAAGA 58.415 36.000 0.00 0.00 38.23 2.52
254 255 6.481313 ACTTTAAGTAAGGTTGGACGAAAGAC 59.519 38.462 0.00 0.00 38.23 3.01
255 256 8.630869 ACTTTAAGTAAGGTTGGACGAAAGACG 61.631 40.741 0.00 0.00 42.00 4.18
256 257 2.624838 AGTAAGGTTGGACGAAAGACGA 59.375 45.455 0.00 0.00 45.77 4.20
257 258 2.150397 AAGGTTGGACGAAAGACGAG 57.850 50.000 0.00 0.00 45.77 4.18
260 261 0.662374 GTTGGACGAAAGACGAGCGA 60.662 55.000 0.00 0.00 45.77 4.93
261 262 0.031043 TTGGACGAAAGACGAGCGAA 59.969 50.000 0.00 0.00 45.77 4.70
262 263 0.662374 TGGACGAAAGACGAGCGAAC 60.662 55.000 0.00 0.00 45.77 3.95
263 264 1.662845 GGACGAAAGACGAGCGAACG 61.663 60.000 0.00 0.00 45.77 3.95
264 265 0.723790 GACGAAAGACGAGCGAACGA 60.724 55.000 8.50 0.00 45.77 3.85
265 266 0.995731 ACGAAAGACGAGCGAACGAC 60.996 55.000 8.50 2.87 45.77 4.34
266 267 0.995234 CGAAAGACGAGCGAACGACA 60.995 55.000 8.50 0.00 45.77 4.35
267 268 1.126079 GAAAGACGAGCGAACGACAA 58.874 50.000 8.50 0.00 37.03 3.18
269 270 0.850856 AAGACGAGCGAACGACAAAC 59.149 50.000 8.50 0.00 37.03 2.93
270 271 0.938168 AGACGAGCGAACGACAAACC 60.938 55.000 8.50 0.00 37.03 3.27
271 272 1.883725 GACGAGCGAACGACAAACCC 61.884 60.000 8.50 0.00 37.03 4.11
272 273 1.952133 CGAGCGAACGACAAACCCA 60.952 57.895 0.00 0.00 35.09 4.51
273 274 1.289109 CGAGCGAACGACAAACCCAT 61.289 55.000 0.00 0.00 35.09 4.00
274 275 1.717194 GAGCGAACGACAAACCCATA 58.283 50.000 0.00 0.00 0.00 2.74
275 276 2.277084 GAGCGAACGACAAACCCATAT 58.723 47.619 0.00 0.00 0.00 1.78
276 277 3.450578 GAGCGAACGACAAACCCATATA 58.549 45.455 0.00 0.00 0.00 0.86
280 281 3.800506 CGAACGACAAACCCATATACTCC 59.199 47.826 0.00 0.00 0.00 3.85
281 282 3.832615 ACGACAAACCCATATACTCCC 57.167 47.619 0.00 0.00 0.00 4.30
282 283 3.381335 ACGACAAACCCATATACTCCCT 58.619 45.455 0.00 0.00 0.00 4.20
283 284 3.387050 ACGACAAACCCATATACTCCCTC 59.613 47.826 0.00 0.00 0.00 4.30
284 285 3.244112 CGACAAACCCATATACTCCCTCC 60.244 52.174 0.00 0.00 0.00 4.30
286 287 2.704065 CAAACCCATATACTCCCTCCGT 59.296 50.000 0.00 0.00 0.00 4.69
287 288 2.789323 ACCCATATACTCCCTCCGTT 57.211 50.000 0.00 0.00 0.00 4.44
288 289 2.606378 ACCCATATACTCCCTCCGTTC 58.394 52.381 0.00 0.00 0.00 3.95
289 290 1.544691 CCCATATACTCCCTCCGTTCG 59.455 57.143 0.00 0.00 0.00 3.95
290 291 1.544691 CCATATACTCCCTCCGTTCGG 59.455 57.143 4.74 4.74 0.00 4.30
291 292 2.511659 CATATACTCCCTCCGTTCGGA 58.488 52.381 13.34 13.34 0.00 4.55
292 293 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
293 294 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
294 295 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
295 296 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
296 297 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
297 298 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
298 299 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
299 300 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
300 301 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
301 302 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
302 303 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
303 304 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
306 307 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
308 309 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
309 310 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
311 312 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
312 313 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
313 314 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
314 315 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
315 316 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
316 317 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
319 320 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
321 322 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
322 323 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
325 326 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
326 327 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
327 328 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
328 329 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
329 330 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
353 354 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
354 355 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
357 358 5.117287 GTCTAGATACATCCATTTTCGCGAC 59.883 44.000 9.15 0.00 0.00 5.19
359 360 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
360 361 4.634004 AGATACATCCATTTTCGCGACAAA 59.366 37.500 9.15 13.35 0.00 2.83
361 362 3.848272 ACATCCATTTTCGCGACAAAT 57.152 38.095 9.15 15.06 0.00 2.32
362 363 4.955925 ACATCCATTTTCGCGACAAATA 57.044 36.364 20.80 12.17 0.00 1.40
363 364 5.303747 ACATCCATTTTCGCGACAAATAA 57.696 34.783 20.80 15.26 0.00 1.40
364 365 5.890334 ACATCCATTTTCGCGACAAATAAT 58.110 33.333 20.80 16.28 0.00 1.28
365 366 6.329496 ACATCCATTTTCGCGACAAATAATT 58.671 32.000 20.80 10.93 0.00 1.40
367 368 5.336744 TCCATTTTCGCGACAAATAATTCC 58.663 37.500 20.80 0.00 0.00 3.01
368 369 4.204168 CCATTTTCGCGACAAATAATTCCG 59.796 41.667 20.80 12.13 0.00 4.30
369 370 4.665281 TTTTCGCGACAAATAATTCCGA 57.335 36.364 9.15 0.00 0.00 4.55
370 371 4.665281 TTTCGCGACAAATAATTCCGAA 57.335 36.364 9.15 0.00 0.00 4.30
371 372 3.644805 TCGCGACAAATAATTCCGAAC 57.355 42.857 3.71 0.00 0.00 3.95
372 373 2.028284 TCGCGACAAATAATTCCGAACG 59.972 45.455 3.71 0.00 0.00 3.95
374 375 2.349275 GCGACAAATAATTCCGAACGGA 59.651 45.455 12.04 12.04 43.52 4.69
376 377 3.000925 CGACAAATAATTCCGAACGGAGG 59.999 47.826 15.34 4.52 46.06 4.30
377 378 3.275999 ACAAATAATTCCGAACGGAGGG 58.724 45.455 15.34 5.11 46.06 4.30
378 379 3.054948 ACAAATAATTCCGAACGGAGGGA 60.055 43.478 15.34 2.49 46.06 4.20
380 381 1.856629 TAATTCCGAACGGAGGGAGT 58.143 50.000 15.34 4.12 46.06 3.85
381 382 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
383 384 0.967380 TTCCGAACGGAGGGAGTACC 60.967 60.000 15.34 0.00 46.06 3.34
401 402 9.856488 GGGAGTACCTTTTTCTTCATTATTTTC 57.144 33.333 0.00 0.00 35.85 2.29
408 409 8.915654 CCTTTTTCTTCATTATTTTCGAGTTGG 58.084 33.333 0.00 0.00 0.00 3.77
411 412 7.915293 TTCTTCATTATTTTCGAGTTGGCTA 57.085 32.000 0.00 0.00 0.00 3.93
412 413 7.915293 TCTTCATTATTTTCGAGTTGGCTAA 57.085 32.000 0.00 0.00 0.00 3.09
413 414 7.748847 TCTTCATTATTTTCGAGTTGGCTAAC 58.251 34.615 4.51 4.51 37.06 2.34
415 416 8.780846 TTCATTATTTTCGAGTTGGCTAACTA 57.219 30.769 16.16 0.00 46.79 2.24
416 417 8.193250 TCATTATTTTCGAGTTGGCTAACTAC 57.807 34.615 16.16 8.61 46.79 2.73
418 419 3.323751 TTTCGAGTTGGCTAACTACCC 57.676 47.619 16.16 2.76 46.79 3.69
419 420 1.927487 TCGAGTTGGCTAACTACCCA 58.073 50.000 16.16 0.00 46.79 4.51
422 423 2.289565 GAGTTGGCTAACTACCCATGC 58.710 52.381 16.16 0.00 46.79 4.06
423 424 1.633432 AGTTGGCTAACTACCCATGCA 59.367 47.619 14.53 0.00 45.07 3.96
424 425 2.041081 AGTTGGCTAACTACCCATGCAA 59.959 45.455 14.53 0.00 45.07 4.08
425 426 2.418368 TGGCTAACTACCCATGCAAG 57.582 50.000 0.00 0.00 0.00 4.01
426 427 1.633432 TGGCTAACTACCCATGCAAGT 59.367 47.619 0.00 0.00 0.00 3.16
429 430 2.618045 GCTAACTACCCATGCAAGTGGT 60.618 50.000 5.63 7.84 37.57 4.16
430 431 3.370103 GCTAACTACCCATGCAAGTGGTA 60.370 47.826 5.63 8.53 37.57 3.25
435 436 1.271926 ACCCATGCAAGTGGTAGAACC 60.272 52.381 5.63 0.00 37.57 3.62
436 437 1.004745 CCCATGCAAGTGGTAGAACCT 59.995 52.381 5.63 0.00 39.58 3.50
437 438 2.555227 CCCATGCAAGTGGTAGAACCTT 60.555 50.000 5.63 0.00 39.58 3.50
438 439 3.157087 CCATGCAAGTGGTAGAACCTTT 58.843 45.455 0.00 0.00 39.58 3.11
441 442 1.069227 GCAAGTGGTAGAACCTTTGCG 60.069 52.381 17.03 0.00 43.71 4.85
442 443 2.218603 CAAGTGGTAGAACCTTTGCGT 58.781 47.619 0.00 0.00 39.58 5.24
444 445 1.692519 AGTGGTAGAACCTTTGCGTCT 59.307 47.619 0.00 0.00 39.58 4.18
445 446 2.104281 AGTGGTAGAACCTTTGCGTCTT 59.896 45.455 0.00 0.00 39.58 3.01
446 447 2.876550 GTGGTAGAACCTTTGCGTCTTT 59.123 45.455 0.00 0.00 39.58 2.52
447 448 3.314357 GTGGTAGAACCTTTGCGTCTTTT 59.686 43.478 0.00 0.00 39.58 2.27
448 449 3.949113 TGGTAGAACCTTTGCGTCTTTTT 59.051 39.130 0.00 0.00 39.58 1.94
465 466 1.933021 TTTTGAGTAGGAGAGCCCGA 58.067 50.000 0.00 0.00 40.87 5.14
466 467 1.933021 TTTGAGTAGGAGAGCCCGAA 58.067 50.000 0.00 0.00 40.87 4.30
467 468 1.933021 TTGAGTAGGAGAGCCCGAAA 58.067 50.000 0.00 0.00 40.87 3.46
471 472 2.168728 GAGTAGGAGAGCCCGAAAACAT 59.831 50.000 0.00 0.00 40.87 2.71
477 478 2.749621 GAGAGCCCGAAAACATTCATGT 59.250 45.455 0.00 0.00 44.20 3.21
479 480 3.941483 AGAGCCCGAAAACATTCATGTAG 59.059 43.478 0.00 0.00 40.80 2.74
482 483 3.632145 GCCCGAAAACATTCATGTAGGAT 59.368 43.478 0.00 0.00 40.80 3.24
489 490 7.201635 CGAAAACATTCATGTAGGATCATGTGA 60.202 37.037 0.00 0.00 43.70 3.58
497 498 9.551734 TTCATGTAGGATCATGTGAAATCTTAG 57.448 33.333 0.00 0.00 43.70 2.18
500 501 6.615316 TGTAGGATCATGTGAAATCTTAGGGA 59.385 38.462 0.00 0.00 0.00 4.20
502 503 5.669447 AGGATCATGTGAAATCTTAGGGAGT 59.331 40.000 0.00 0.00 0.00 3.85
504 505 6.408548 GGATCATGTGAAATCTTAGGGAGTGA 60.409 42.308 0.00 0.00 0.00 3.41
506 507 6.962182 TCATGTGAAATCTTAGGGAGTGAAT 58.038 36.000 0.00 0.00 0.00 2.57
509 510 7.733773 TGTGAAATCTTAGGGAGTGAATCTA 57.266 36.000 0.00 0.00 0.00 1.98
518 519 3.450457 AGGGAGTGAATCTAGCTCTTGTG 59.550 47.826 0.00 0.00 0.00 3.33
521 522 4.081972 GGAGTGAATCTAGCTCTTGTGTCA 60.082 45.833 0.00 0.00 0.00 3.58
524 525 3.834813 TGAATCTAGCTCTTGTGTCAGGT 59.165 43.478 0.00 0.00 0.00 4.00
545 546 6.769608 GGTTTTCCTTGCATTGTTTCTTAG 57.230 37.500 0.00 0.00 36.94 2.18
548 549 7.430441 GTTTTCCTTGCATTGTTTCTTAGGTA 58.570 34.615 0.00 0.00 0.00 3.08
551 552 6.721318 TCCTTGCATTGTTTCTTAGGTAGAT 58.279 36.000 0.00 0.00 31.54 1.98
553 554 6.038714 CCTTGCATTGTTTCTTAGGTAGATCC 59.961 42.308 0.00 0.00 31.54 3.36
595 596 8.410141 CAACATAAACCTTGTTAGGACTTTTCA 58.590 33.333 0.00 0.00 45.05 2.69
622 624 7.373778 AGTACATTTTTCGGTGGATTAGTTC 57.626 36.000 0.00 0.00 0.00 3.01
638 640 3.120321 AGTTCATACGGTTGACTTGCA 57.880 42.857 0.00 0.00 0.00 4.08
646 648 4.419522 ACGGTTGACTTGCATGATTAAC 57.580 40.909 6.60 7.90 0.00 2.01
652 654 3.750652 TGACTTGCATGATTAACGAGCAA 59.249 39.130 6.60 0.00 42.27 3.91
659 661 4.670621 GCATGATTAACGAGCAATTAACGG 59.329 41.667 0.00 0.00 0.00 4.44
708 710 4.344102 ACCATTTGCGTATCTTCCTAGCTA 59.656 41.667 0.00 0.00 0.00 3.32
712 714 3.732212 TGCGTATCTTCCTAGCTACGTA 58.268 45.455 9.41 0.00 44.29 3.57
718 720 4.434545 TCTTCCTAGCTACGTACCTCAT 57.565 45.455 0.00 0.00 0.00 2.90
720 722 5.933617 TCTTCCTAGCTACGTACCTCATAA 58.066 41.667 0.00 0.00 0.00 1.90
721 723 5.762218 TCTTCCTAGCTACGTACCTCATAAC 59.238 44.000 0.00 0.00 0.00 1.89
723 725 5.688807 TCCTAGCTACGTACCTCATAACTT 58.311 41.667 0.00 0.00 0.00 2.66
725 727 6.039047 TCCTAGCTACGTACCTCATAACTTTG 59.961 42.308 0.00 0.00 0.00 2.77
731 733 8.448615 GCTACGTACCTCATAACTTTGAAAAAT 58.551 33.333 0.00 0.00 0.00 1.82
790 792 3.446161 CCCTGTACTTTCGATGTACTCCA 59.554 47.826 21.63 8.34 40.44 3.86
876 887 3.631686 TGGCCATAACGATCTTCCAAATG 59.368 43.478 0.00 0.00 0.00 2.32
1804 4341 2.159787 GCGATTGTGTGATGTGAGTGAC 60.160 50.000 0.00 0.00 0.00 3.67
1979 4524 4.713553 TGATTTGTTGAGAGTACTTGCCA 58.286 39.130 0.00 0.00 0.00 4.92
2029 4574 9.934190 CTTGCATTTAATTTTTAAGCAAAGTGT 57.066 25.926 0.00 0.00 39.62 3.55
2185 5104 4.575885 TGGAGGTCAAGTTGCTACATAAC 58.424 43.478 0.13 0.00 0.00 1.89
2198 5117 4.023279 TGCTACATAACAAACTTGCACAGG 60.023 41.667 0.00 0.00 0.00 4.00
2234 5153 4.585879 GAGGTAGTTAGCAAATTGGTGGA 58.414 43.478 8.06 0.00 0.00 4.02
2243 5162 8.646900 AGTTAGCAAATTGGTGGATTTTCTAAA 58.353 29.630 8.06 0.00 36.88 1.85
2350 6740 7.500992 TGAAGAGAAGCGAGGATATTTGTTAT 58.499 34.615 0.00 0.00 0.00 1.89
2351 6741 8.638873 TGAAGAGAAGCGAGGATATTTGTTATA 58.361 33.333 0.00 0.00 0.00 0.98
2352 6742 9.477484 GAAGAGAAGCGAGGATATTTGTTATAA 57.523 33.333 0.00 0.00 0.00 0.98
2422 6975 8.632679 TCCTTCCTTATTTGAATATTCATGTGC 58.367 33.333 18.61 0.00 37.00 4.57
2445 6998 5.106908 GCGCTTCAGCTAATAAAGGGATAAG 60.107 44.000 0.00 0.00 39.32 1.73
2448 7001 6.146347 GCTTCAGCTAATAAAGGGATAAGTCG 59.854 42.308 0.00 0.00 38.21 4.18
2542 7096 8.865090 CAAAGTCTATAGGTCTCTTGTATGGAT 58.135 37.037 0.00 0.00 0.00 3.41
2582 7136 8.031848 ACACATGCACCAATTTCAATTTTATC 57.968 30.769 0.00 0.00 0.00 1.75
2664 7218 0.037734 CCTTGGAGGCTAACCCGTTT 59.962 55.000 0.00 0.00 39.21 3.60
2672 7226 5.104444 TGGAGGCTAACCCGTTTATTTATCA 60.104 40.000 0.00 0.00 39.21 2.15
2684 7238 9.116067 CCCGTTTATTTATCACTATTTTCCTCA 57.884 33.333 0.00 0.00 0.00 3.86
2728 7282 2.482721 GCACGCAAACTGTACTTGGTAT 59.517 45.455 0.00 0.00 0.00 2.73
2789 7343 7.658982 TCTGATCCACATTAATTGTAGCTGATC 59.341 37.037 0.00 0.00 36.57 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.301897 GGGTAAATCTCAGAGGCATTTATATTT 57.698 33.333 7.31 2.58 0.00 1.40
3 4 7.607991 CGGGTAAATCTCAGAGGCATTTATATT 59.392 37.037 7.31 0.00 0.00 1.28
4 5 7.106239 CGGGTAAATCTCAGAGGCATTTATAT 58.894 38.462 7.31 0.00 0.00 0.86
5 6 6.042781 ACGGGTAAATCTCAGAGGCATTTATA 59.957 38.462 7.31 0.00 0.00 0.98
6 7 5.163195 ACGGGTAAATCTCAGAGGCATTTAT 60.163 40.000 7.31 0.00 0.00 1.40
8 9 3.054361 ACGGGTAAATCTCAGAGGCATTT 60.054 43.478 0.00 0.20 0.00 2.32
9 10 2.505819 ACGGGTAAATCTCAGAGGCATT 59.494 45.455 0.00 0.00 0.00 3.56
10 11 2.103263 GACGGGTAAATCTCAGAGGCAT 59.897 50.000 0.00 0.00 0.00 4.40
14 15 2.496070 TGTGGACGGGTAAATCTCAGAG 59.504 50.000 0.00 0.00 0.00 3.35
15 16 2.531771 TGTGGACGGGTAAATCTCAGA 58.468 47.619 0.00 0.00 0.00 3.27
16 17 3.543680 ATGTGGACGGGTAAATCTCAG 57.456 47.619 0.00 0.00 0.00 3.35
17 18 3.262151 TCAATGTGGACGGGTAAATCTCA 59.738 43.478 0.00 0.00 0.00 3.27
20 21 3.945285 ACATCAATGTGGACGGGTAAATC 59.055 43.478 0.00 0.00 40.03 2.17
21 22 3.963129 ACATCAATGTGGACGGGTAAAT 58.037 40.909 0.00 0.00 40.03 1.40
76 77 8.748412 TGTTAAGCCAATAAGTGCTTATGAAAT 58.252 29.630 5.34 0.00 46.26 2.17
77 78 8.116651 TGTTAAGCCAATAAGTGCTTATGAAA 57.883 30.769 5.34 0.00 46.26 2.69
78 79 7.695480 TGTTAAGCCAATAAGTGCTTATGAA 57.305 32.000 5.34 0.00 46.26 2.57
79 80 7.880160 ATGTTAAGCCAATAAGTGCTTATGA 57.120 32.000 5.34 0.00 46.26 2.15
127 128 9.299465 CACTAAACCCTAAACCTAAACCAAATA 57.701 33.333 0.00 0.00 0.00 1.40
128 129 7.256048 GCACTAAACCCTAAACCTAAACCAAAT 60.256 37.037 0.00 0.00 0.00 2.32
129 130 6.040729 GCACTAAACCCTAAACCTAAACCAAA 59.959 38.462 0.00 0.00 0.00 3.28
130 131 5.535783 GCACTAAACCCTAAACCTAAACCAA 59.464 40.000 0.00 0.00 0.00 3.67
131 132 5.072055 GCACTAAACCCTAAACCTAAACCA 58.928 41.667 0.00 0.00 0.00 3.67
134 135 5.226194 TCGCACTAAACCCTAAACCTAAA 57.774 39.130 0.00 0.00 0.00 1.85
135 136 4.888326 TCGCACTAAACCCTAAACCTAA 57.112 40.909 0.00 0.00 0.00 2.69
136 137 5.046448 TCAATCGCACTAAACCCTAAACCTA 60.046 40.000 0.00 0.00 0.00 3.08
137 138 3.994931 ATCGCACTAAACCCTAAACCT 57.005 42.857 0.00 0.00 0.00 3.50
139 140 5.616488 TTCAATCGCACTAAACCCTAAAC 57.384 39.130 0.00 0.00 0.00 2.01
140 141 4.155280 GCTTCAATCGCACTAAACCCTAAA 59.845 41.667 0.00 0.00 0.00 1.85
141 142 3.687698 GCTTCAATCGCACTAAACCCTAA 59.312 43.478 0.00 0.00 0.00 2.69
142 143 3.267483 GCTTCAATCGCACTAAACCCTA 58.733 45.455 0.00 0.00 0.00 3.53
143 144 2.084546 GCTTCAATCGCACTAAACCCT 58.915 47.619 0.00 0.00 0.00 4.34
145 146 2.484264 ACTGCTTCAATCGCACTAAACC 59.516 45.455 0.00 0.00 33.19 3.27
146 147 3.813529 ACTGCTTCAATCGCACTAAAC 57.186 42.857 0.00 0.00 33.19 2.01
148 149 3.664107 AGAACTGCTTCAATCGCACTAA 58.336 40.909 0.00 0.00 33.19 2.24
150 151 2.175878 AGAACTGCTTCAATCGCACT 57.824 45.000 0.00 0.00 33.19 4.40
152 153 1.536766 CCAAGAACTGCTTCAATCGCA 59.463 47.619 0.00 0.00 33.60 5.10
153 154 1.135575 CCCAAGAACTGCTTCAATCGC 60.136 52.381 0.00 0.00 33.60 4.58
154 155 1.470098 CCCCAAGAACTGCTTCAATCG 59.530 52.381 0.00 0.00 33.60 3.34
155 156 2.795329 TCCCCAAGAACTGCTTCAATC 58.205 47.619 0.00 0.00 33.60 2.67
156 157 2.978156 TCCCCAAGAACTGCTTCAAT 57.022 45.000 0.00 0.00 33.60 2.57
157 158 2.746279 TTCCCCAAGAACTGCTTCAA 57.254 45.000 0.00 0.00 33.60 2.69
158 159 2.586425 CTTTCCCCAAGAACTGCTTCA 58.414 47.619 0.00 0.00 33.60 3.02
161 162 1.149101 TCCTTTCCCCAAGAACTGCT 58.851 50.000 0.00 0.00 33.80 4.24
162 163 1.821136 CATCCTTTCCCCAAGAACTGC 59.179 52.381 0.00 0.00 33.80 4.40
163 164 3.009473 TCTCATCCTTTCCCCAAGAACTG 59.991 47.826 0.00 0.00 33.80 3.16
164 165 3.260205 TCTCATCCTTTCCCCAAGAACT 58.740 45.455 0.00 0.00 33.80 3.01
165 166 3.721087 TCTCATCCTTTCCCCAAGAAC 57.279 47.619 0.00 0.00 33.80 3.01
166 167 4.740154 TTTCTCATCCTTTCCCCAAGAA 57.260 40.909 0.00 0.00 33.80 2.52
167 168 4.407365 GTTTTCTCATCCTTTCCCCAAGA 58.593 43.478 0.00 0.00 33.80 3.02
169 170 3.153919 CGTTTTCTCATCCTTTCCCCAA 58.846 45.455 0.00 0.00 0.00 4.12
170 171 2.373836 TCGTTTTCTCATCCTTTCCCCA 59.626 45.455 0.00 0.00 0.00 4.96
172 173 3.010420 CCTCGTTTTCTCATCCTTTCCC 58.990 50.000 0.00 0.00 0.00 3.97
173 174 3.939066 TCCTCGTTTTCTCATCCTTTCC 58.061 45.455 0.00 0.00 0.00 3.13
174 175 4.938226 ACATCCTCGTTTTCTCATCCTTTC 59.062 41.667 0.00 0.00 0.00 2.62
175 176 4.697352 CACATCCTCGTTTTCTCATCCTTT 59.303 41.667 0.00 0.00 0.00 3.11
176 177 4.020218 TCACATCCTCGTTTTCTCATCCTT 60.020 41.667 0.00 0.00 0.00 3.36
177 178 3.515502 TCACATCCTCGTTTTCTCATCCT 59.484 43.478 0.00 0.00 0.00 3.24
179 180 5.862924 TTTCACATCCTCGTTTTCTCATC 57.137 39.130 0.00 0.00 0.00 2.92
180 181 6.633500 TTTTTCACATCCTCGTTTTCTCAT 57.367 33.333 0.00 0.00 0.00 2.90
205 206 4.469469 TCACCTCCCTCTTTCCATTTTT 57.531 40.909 0.00 0.00 0.00 1.94
206 207 4.469469 TTCACCTCCCTCTTTCCATTTT 57.531 40.909 0.00 0.00 0.00 1.82
207 208 4.469469 TTTCACCTCCCTCTTTCCATTT 57.531 40.909 0.00 0.00 0.00 2.32
208 209 4.140924 AGTTTTCACCTCCCTCTTTCCATT 60.141 41.667 0.00 0.00 0.00 3.16
209 210 3.399305 AGTTTTCACCTCCCTCTTTCCAT 59.601 43.478 0.00 0.00 0.00 3.41
210 211 2.783510 AGTTTTCACCTCCCTCTTTCCA 59.216 45.455 0.00 0.00 0.00 3.53
211 212 3.510531 AGTTTTCACCTCCCTCTTTCC 57.489 47.619 0.00 0.00 0.00 3.13
212 213 6.546403 ACTTAAAGTTTTCACCTCCCTCTTTC 59.454 38.462 0.00 0.00 0.00 2.62
213 214 6.432581 ACTTAAAGTTTTCACCTCCCTCTTT 58.567 36.000 0.00 0.00 0.00 2.52
215 216 5.648330 ACTTAAAGTTTTCACCTCCCTCT 57.352 39.130 0.00 0.00 0.00 3.69
216 217 6.430308 CCTTACTTAAAGTTTTCACCTCCCTC 59.570 42.308 0.00 0.00 32.89 4.30
217 218 6.126273 ACCTTACTTAAAGTTTTCACCTCCCT 60.126 38.462 0.00 0.00 32.89 4.20
218 219 6.066690 ACCTTACTTAAAGTTTTCACCTCCC 58.933 40.000 0.00 0.00 32.89 4.30
221 222 7.067859 GTCCAACCTTACTTAAAGTTTTCACCT 59.932 37.037 0.00 0.00 32.89 4.00
223 224 6.908820 CGTCCAACCTTACTTAAAGTTTTCAC 59.091 38.462 0.00 0.00 32.89 3.18
224 225 6.822676 TCGTCCAACCTTACTTAAAGTTTTCA 59.177 34.615 0.00 0.00 32.89 2.69
225 226 7.250445 TCGTCCAACCTTACTTAAAGTTTTC 57.750 36.000 0.00 0.00 32.89 2.29
227 228 7.553760 TCTTTCGTCCAACCTTACTTAAAGTTT 59.446 33.333 0.00 0.00 32.89 2.66
228 229 7.011763 GTCTTTCGTCCAACCTTACTTAAAGTT 59.988 37.037 0.00 0.00 32.89 2.66
229 230 6.481313 GTCTTTCGTCCAACCTTACTTAAAGT 59.519 38.462 0.00 0.00 32.89 2.66
231 232 5.463061 CGTCTTTCGTCCAACCTTACTTAAA 59.537 40.000 0.00 0.00 34.52 1.52
232 233 4.984161 CGTCTTTCGTCCAACCTTACTTAA 59.016 41.667 0.00 0.00 34.52 1.85
234 235 3.068590 TCGTCTTTCGTCCAACCTTACTT 59.931 43.478 0.00 0.00 40.80 2.24
235 236 2.624838 TCGTCTTTCGTCCAACCTTACT 59.375 45.455 0.00 0.00 40.80 2.24
236 237 2.985139 CTCGTCTTTCGTCCAACCTTAC 59.015 50.000 0.00 0.00 40.80 2.34
237 238 2.608752 GCTCGTCTTTCGTCCAACCTTA 60.609 50.000 0.00 0.00 40.80 2.69
238 239 1.872653 GCTCGTCTTTCGTCCAACCTT 60.873 52.381 0.00 0.00 40.80 3.50
239 240 0.319641 GCTCGTCTTTCGTCCAACCT 60.320 55.000 0.00 0.00 40.80 3.50
240 241 1.615107 CGCTCGTCTTTCGTCCAACC 61.615 60.000 0.00 0.00 40.80 3.77
242 243 0.031043 TTCGCTCGTCTTTCGTCCAA 59.969 50.000 0.00 0.00 40.80 3.53
243 244 0.662374 GTTCGCTCGTCTTTCGTCCA 60.662 55.000 0.00 0.00 40.80 4.02
245 246 0.723790 TCGTTCGCTCGTCTTTCGTC 60.724 55.000 0.00 0.00 40.80 4.20
246 247 0.995731 GTCGTTCGCTCGTCTTTCGT 60.996 55.000 0.00 0.00 40.80 3.85
247 248 0.995234 TGTCGTTCGCTCGTCTTTCG 60.995 55.000 0.00 0.00 41.41 3.46
248 249 1.126079 TTGTCGTTCGCTCGTCTTTC 58.874 50.000 0.00 0.00 0.00 2.62
249 250 1.257155 GTTTGTCGTTCGCTCGTCTTT 59.743 47.619 0.00 0.00 0.00 2.52
250 251 0.850856 GTTTGTCGTTCGCTCGTCTT 59.149 50.000 0.00 0.00 0.00 3.01
253 254 1.952635 GGGTTTGTCGTTCGCTCGT 60.953 57.895 0.00 0.00 0.00 4.18
254 255 1.289109 ATGGGTTTGTCGTTCGCTCG 61.289 55.000 0.00 0.00 0.00 5.03
255 256 1.717194 TATGGGTTTGTCGTTCGCTC 58.283 50.000 0.00 0.00 0.00 5.03
256 257 2.396590 ATATGGGTTTGTCGTTCGCT 57.603 45.000 0.00 0.00 0.00 4.93
257 258 3.192466 AGTATATGGGTTTGTCGTTCGC 58.808 45.455 0.00 0.00 0.00 4.70
260 261 3.778629 AGGGAGTATATGGGTTTGTCGTT 59.221 43.478 0.00 0.00 0.00 3.85
261 262 3.381335 AGGGAGTATATGGGTTTGTCGT 58.619 45.455 0.00 0.00 0.00 4.34
262 263 3.244112 GGAGGGAGTATATGGGTTTGTCG 60.244 52.174 0.00 0.00 0.00 4.35
263 264 3.244112 CGGAGGGAGTATATGGGTTTGTC 60.244 52.174 0.00 0.00 0.00 3.18
264 265 2.704065 CGGAGGGAGTATATGGGTTTGT 59.296 50.000 0.00 0.00 0.00 2.83
265 266 2.704065 ACGGAGGGAGTATATGGGTTTG 59.296 50.000 0.00 0.00 0.00 2.93
266 267 3.056201 ACGGAGGGAGTATATGGGTTT 57.944 47.619 0.00 0.00 0.00 3.27
267 268 2.789323 ACGGAGGGAGTATATGGGTT 57.211 50.000 0.00 0.00 0.00 4.11
269 270 1.544691 CGAACGGAGGGAGTATATGGG 59.455 57.143 0.00 0.00 0.00 4.00
270 271 1.544691 CCGAACGGAGGGAGTATATGG 59.455 57.143 7.53 0.00 37.50 2.74
271 272 2.511659 TCCGAACGGAGGGAGTATATG 58.488 52.381 12.04 0.00 39.76 1.78
272 273 2.965671 TCCGAACGGAGGGAGTATAT 57.034 50.000 12.04 0.00 39.76 0.86
273 274 2.734755 TTCCGAACGGAGGGAGTATA 57.265 50.000 15.34 0.00 46.06 1.47
274 275 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
275 276 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
276 277 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
280 281 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
281 282 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
282 283 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
283 284 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
284 285 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
286 287 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
287 288 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
288 289 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
289 290 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
290 291 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
291 292 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
292 293 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
293 294 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
294 295 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
295 296 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
296 297 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
297 298 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
298 299 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
299 300 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
300 301 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
301 302 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
302 303 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
303 304 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
327 328 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
328 329 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
329 330 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
330 331 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
331 332 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
332 333 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
334 335 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
335 336 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
336 337 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
337 338 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
339 340 4.955925 TTTGTCGCGAAAATGGATGTAT 57.044 36.364 13.47 0.00 0.00 2.29
341 342 3.848272 ATTTGTCGCGAAAATGGATGT 57.152 38.095 13.47 0.00 0.00 3.06
342 343 6.074888 GGAATTATTTGTCGCGAAAATGGATG 60.075 38.462 25.70 0.00 0.00 3.51
344 345 5.336744 GGAATTATTTGTCGCGAAAATGGA 58.663 37.500 25.70 18.72 0.00 3.41
345 346 4.204168 CGGAATTATTTGTCGCGAAAATGG 59.796 41.667 25.70 12.55 0.00 3.16
346 347 5.025190 TCGGAATTATTTGTCGCGAAAATG 58.975 37.500 25.70 15.17 0.00 2.32
347 348 5.224562 TCGGAATTATTTGTCGCGAAAAT 57.775 34.783 23.08 23.08 0.00 1.82
348 349 4.665281 TCGGAATTATTTGTCGCGAAAA 57.335 36.364 12.06 9.79 0.00 2.29
349 350 4.396519 GTTCGGAATTATTTGTCGCGAAA 58.603 39.130 12.06 0.54 32.32 3.46
350 351 3.482274 CGTTCGGAATTATTTGTCGCGAA 60.482 43.478 12.06 0.00 0.00 4.70
351 352 2.028284 CGTTCGGAATTATTTGTCGCGA 59.972 45.455 3.71 3.71 0.00 5.87
352 353 2.350616 CGTTCGGAATTATTTGTCGCG 58.649 47.619 0.00 0.00 0.00 5.87
353 354 2.349275 TCCGTTCGGAATTATTTGTCGC 59.651 45.455 11.66 0.00 0.00 5.19
354 355 3.000925 CCTCCGTTCGGAATTATTTGTCG 59.999 47.826 14.79 0.00 33.41 4.35
357 358 3.537580 TCCCTCCGTTCGGAATTATTTG 58.462 45.455 14.79 1.97 33.41 2.32
359 360 2.770232 ACTCCCTCCGTTCGGAATTATT 59.230 45.455 14.79 0.00 33.41 1.40
360 361 2.395619 ACTCCCTCCGTTCGGAATTAT 58.604 47.619 14.79 0.00 33.41 1.28
361 362 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
362 363 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
363 364 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
364 365 0.967380 GGTACTCCCTCCGTTCGGAA 60.967 60.000 14.79 0.04 33.41 4.30
365 366 1.379044 GGTACTCCCTCCGTTCGGA 60.379 63.158 13.34 13.34 0.00 4.55
367 368 0.893447 AAAGGTACTCCCTCCGTTCG 59.107 55.000 0.00 0.00 45.47 3.95
368 369 3.007723 AGAAAAAGGTACTCCCTCCGTTC 59.992 47.826 0.00 0.00 45.47 3.95
369 370 2.977580 AGAAAAAGGTACTCCCTCCGTT 59.022 45.455 0.00 0.00 45.47 4.44
370 371 2.617658 AGAAAAAGGTACTCCCTCCGT 58.382 47.619 0.00 0.00 45.47 4.69
371 372 3.007614 TGAAGAAAAAGGTACTCCCTCCG 59.992 47.826 0.00 0.00 45.47 4.63
372 373 4.635699 TGAAGAAAAAGGTACTCCCTCC 57.364 45.455 0.00 0.00 45.47 4.30
376 377 9.556030 CGAAAATAATGAAGAAAAAGGTACTCC 57.444 33.333 0.00 0.00 38.49 3.85
381 382 9.463443 CAACTCGAAAATAATGAAGAAAAAGGT 57.537 29.630 0.00 0.00 0.00 3.50
383 384 8.427774 GCCAACTCGAAAATAATGAAGAAAAAG 58.572 33.333 0.00 0.00 0.00 2.27
384 385 8.141268 AGCCAACTCGAAAATAATGAAGAAAAA 58.859 29.630 0.00 0.00 0.00 1.94
385 386 7.657336 AGCCAACTCGAAAATAATGAAGAAAA 58.343 30.769 0.00 0.00 0.00 2.29
386 387 7.214467 AGCCAACTCGAAAATAATGAAGAAA 57.786 32.000 0.00 0.00 0.00 2.52
387 388 6.817765 AGCCAACTCGAAAATAATGAAGAA 57.182 33.333 0.00 0.00 0.00 2.52
388 389 7.606456 AGTTAGCCAACTCGAAAATAATGAAGA 59.394 33.333 0.00 0.00 41.25 2.87
389 390 7.752695 AGTTAGCCAACTCGAAAATAATGAAG 58.247 34.615 0.00 0.00 41.25 3.02
390 391 7.681939 AGTTAGCCAACTCGAAAATAATGAA 57.318 32.000 0.00 0.00 41.25 2.57
391 392 7.279313 GGTAGTTAGCCAACTCGAAAATAATGA 59.721 37.037 0.00 0.00 44.04 2.57
392 393 7.407337 GGTAGTTAGCCAACTCGAAAATAATG 58.593 38.462 0.00 0.00 44.04 1.90
393 394 6.541278 GGGTAGTTAGCCAACTCGAAAATAAT 59.459 38.462 0.00 0.00 44.04 1.28
394 395 5.876460 GGGTAGTTAGCCAACTCGAAAATAA 59.124 40.000 0.00 0.00 44.04 1.40
395 396 5.422145 GGGTAGTTAGCCAACTCGAAAATA 58.578 41.667 0.00 0.00 44.04 1.40
396 397 4.259356 GGGTAGTTAGCCAACTCGAAAAT 58.741 43.478 0.00 0.00 44.04 1.82
397 398 3.667360 GGGTAGTTAGCCAACTCGAAAA 58.333 45.455 0.00 0.00 44.04 2.29
398 399 3.323751 GGGTAGTTAGCCAACTCGAAA 57.676 47.619 0.00 0.00 44.04 3.46
408 409 2.017049 CCACTTGCATGGGTAGTTAGC 58.983 52.381 4.44 0.00 35.95 3.09
411 412 3.350219 CTACCACTTGCATGGGTAGTT 57.650 47.619 24.22 5.73 45.82 2.24
414 415 2.026636 GGTTCTACCACTTGCATGGGTA 60.027 50.000 11.02 13.31 44.81 3.69
415 416 1.271926 GGTTCTACCACTTGCATGGGT 60.272 52.381 11.02 12.94 44.81 4.51
416 417 1.004745 AGGTTCTACCACTTGCATGGG 59.995 52.381 11.02 2.85 44.81 4.00
418 419 4.164822 CAAAGGTTCTACCACTTGCATG 57.835 45.455 0.00 0.00 41.95 4.06
422 423 2.218603 ACGCAAAGGTTCTACCACTTG 58.781 47.619 0.00 3.07 41.95 3.16
423 424 2.104281 AGACGCAAAGGTTCTACCACTT 59.896 45.455 0.00 0.00 41.95 3.16
424 425 1.692519 AGACGCAAAGGTTCTACCACT 59.307 47.619 0.00 0.00 41.95 4.00
425 426 2.165319 AGACGCAAAGGTTCTACCAC 57.835 50.000 0.00 0.00 41.95 4.16
426 427 2.922740 AAGACGCAAAGGTTCTACCA 57.077 45.000 0.00 0.00 41.95 3.25
445 446 2.253610 TCGGGCTCTCCTACTCAAAAA 58.746 47.619 0.00 0.00 0.00 1.94
446 447 1.933021 TCGGGCTCTCCTACTCAAAA 58.067 50.000 0.00 0.00 0.00 2.44
447 448 1.933021 TTCGGGCTCTCCTACTCAAA 58.067 50.000 0.00 0.00 0.00 2.69
448 449 1.933021 TTTCGGGCTCTCCTACTCAA 58.067 50.000 0.00 0.00 0.00 3.02
449 450 1.549170 GTTTTCGGGCTCTCCTACTCA 59.451 52.381 0.00 0.00 0.00 3.41
450 451 1.549170 TGTTTTCGGGCTCTCCTACTC 59.451 52.381 0.00 0.00 0.00 2.59
451 452 1.640917 TGTTTTCGGGCTCTCCTACT 58.359 50.000 0.00 0.00 0.00 2.57
452 453 2.693267 ATGTTTTCGGGCTCTCCTAC 57.307 50.000 0.00 0.00 0.00 3.18
453 454 2.569853 TGAATGTTTTCGGGCTCTCCTA 59.430 45.455 0.00 0.00 34.39 2.94
454 455 1.351017 TGAATGTTTTCGGGCTCTCCT 59.649 47.619 0.00 0.00 34.39 3.69
455 456 1.821216 TGAATGTTTTCGGGCTCTCC 58.179 50.000 0.00 0.00 34.39 3.71
457 458 2.795329 ACATGAATGTTTTCGGGCTCT 58.205 42.857 0.00 0.00 37.90 4.09
458 459 3.065371 CCTACATGAATGTTTTCGGGCTC 59.935 47.826 0.00 0.00 41.97 4.70
459 460 3.016736 CCTACATGAATGTTTTCGGGCT 58.983 45.455 0.00 0.00 41.97 5.19
462 463 6.624352 ATGATCCTACATGAATGTTTTCGG 57.376 37.500 0.00 0.00 41.97 4.30
477 478 6.846505 ACTCCCTAAGATTTCACATGATCCTA 59.153 38.462 0.00 0.00 0.00 2.94
479 480 5.762218 CACTCCCTAAGATTTCACATGATCC 59.238 44.000 0.00 0.00 0.00 3.36
482 483 6.373005 TTCACTCCCTAAGATTTCACATGA 57.627 37.500 0.00 0.00 0.00 3.07
489 490 6.843861 AGAGCTAGATTCACTCCCTAAGATTT 59.156 38.462 0.00 0.00 0.00 2.17
496 497 3.450457 CACAAGAGCTAGATTCACTCCCT 59.550 47.826 0.00 0.00 0.00 4.20
497 498 3.196685 ACACAAGAGCTAGATTCACTCCC 59.803 47.826 0.00 0.00 0.00 4.30
500 501 4.081752 CCTGACACAAGAGCTAGATTCACT 60.082 45.833 0.00 0.00 0.00 3.41
502 503 3.834813 ACCTGACACAAGAGCTAGATTCA 59.165 43.478 0.00 0.00 0.00 2.57
504 505 4.899352 AACCTGACACAAGAGCTAGATT 57.101 40.909 0.00 0.00 0.00 2.40
506 507 4.503296 GGAAAACCTGACACAAGAGCTAGA 60.503 45.833 0.00 0.00 0.00 2.43
509 510 2.173569 AGGAAAACCTGACACAAGAGCT 59.826 45.455 0.00 0.00 0.00 4.09
518 519 3.733443 ACAATGCAAGGAAAACCTGAC 57.267 42.857 0.00 0.00 0.00 3.51
521 522 5.357742 AAGAAACAATGCAAGGAAAACCT 57.642 34.783 0.00 0.00 0.00 3.50
524 525 6.478512 ACCTAAGAAACAATGCAAGGAAAA 57.521 33.333 2.37 0.00 0.00 2.29
543 544 7.419057 GGAGTCACATTTCATTGGATCTACCTA 60.419 40.741 0.00 0.00 39.86 3.08
545 546 5.529060 GGAGTCACATTTCATTGGATCTACC 59.471 44.000 0.00 0.00 39.54 3.18
548 549 5.183530 TGGAGTCACATTTCATTGGATCT 57.816 39.130 0.00 0.00 0.00 2.75
551 552 4.468713 TGTTGGAGTCACATTTCATTGGA 58.531 39.130 0.00 0.00 0.00 3.53
553 554 7.329226 GGTTTATGTTGGAGTCACATTTCATTG 59.671 37.037 1.78 0.00 0.00 2.82
595 596 4.569719 ATCCACCGAAAAATGTACTCCT 57.430 40.909 0.00 0.00 0.00 3.69
622 624 4.621068 AATCATGCAAGTCAACCGTATG 57.379 40.909 0.00 0.00 0.00 2.39
638 640 5.353123 ACACCGTTAATTGCTCGTTAATCAT 59.647 36.000 0.00 0.00 0.00 2.45
646 648 1.127951 GACCACACCGTTAATTGCTCG 59.872 52.381 0.00 0.00 0.00 5.03
652 654 2.028839 TCACATCGACCACACCGTTAAT 60.029 45.455 0.00 0.00 0.00 1.40
659 661 1.014044 ATGCGTCACATCGACCACAC 61.014 55.000 0.00 0.00 42.07 3.82
731 733 5.644206 TGGCAAGAACGCACATTTAAGTATA 59.356 36.000 0.00 0.00 0.00 1.47
737 739 1.950216 TGTGGCAAGAACGCACATTTA 59.050 42.857 0.00 0.00 0.00 1.40
808 819 5.019498 CACGTTCACAACAGTTAACAGAAC 58.981 41.667 8.61 10.15 0.00 3.01
876 887 2.436115 GGAGGGTAGGTGCAACGC 60.436 66.667 0.00 0.00 38.12 4.84
1096 3627 0.681733 AACTTCTCGCTCTTGCAGGA 59.318 50.000 0.00 0.00 39.64 3.86
1167 3698 2.125147 TATGTCCAGTGCAGCGCC 60.125 61.111 2.29 0.00 0.00 6.53
1747 4284 2.231215 GCCAGAAGCACGATCAGTAT 57.769 50.000 0.00 0.00 42.97 2.12
1749 4286 4.606071 GCCAGAAGCACGATCAGT 57.394 55.556 0.00 0.00 42.97 3.41
1804 4341 2.485479 CCCTCCCGTGGACAGATTAATG 60.485 54.545 0.00 0.00 0.00 1.90
1909 4446 9.206870 GCAATCATTTTTATTTCAACCAAGAGA 57.793 29.630 0.00 0.00 0.00 3.10
1910 4447 9.211485 AGCAATCATTTTTATTTCAACCAAGAG 57.789 29.630 0.00 0.00 0.00 2.85
1914 4451 6.709397 TGCAGCAATCATTTTTATTTCAACCA 59.291 30.769 0.00 0.00 0.00 3.67
1928 4466 3.368013 CCACTTGACAATGCAGCAATCAT 60.368 43.478 0.00 0.00 0.00 2.45
1979 4524 2.443255 AGAGGTTTGACCCAACACATCT 59.557 45.455 0.00 0.00 39.75 2.90
2029 4574 8.815912 TCCCTCGATCAAATGAATCAGAATATA 58.184 33.333 0.00 0.00 0.00 0.86
2127 5020 8.492673 TGGTGAAATAAGAGCTACACTTTATG 57.507 34.615 0.00 0.00 0.00 1.90
2185 5104 2.545106 GCCAAATTCCTGTGCAAGTTTG 59.455 45.455 0.00 0.00 0.00 2.93
2198 5117 6.073711 GCTAACTACCTCGAATAGCCAAATTC 60.074 42.308 3.78 0.00 34.35 2.17
2308 6698 3.578282 TCTTCATACTCTGCAACTCACCA 59.422 43.478 0.00 0.00 0.00 4.17
2445 6998 7.384387 AGACATACCTTACAAGAAGAAAACGAC 59.616 37.037 0.00 0.00 0.00 4.34
2448 7001 8.834749 AGAGACATACCTTACAAGAAGAAAAC 57.165 34.615 0.00 0.00 0.00 2.43
2542 7096 6.426328 GGTGCATGTGTTCAAATAAATTCCAA 59.574 34.615 0.00 0.00 0.00 3.53
2610 7164 8.209584 ACTAATGTCAGAGCTACATCATCATTT 58.790 33.333 1.14 0.00 36.56 2.32
2684 7238 4.101741 CCTCCTGCTAGCTACTATTTTGGT 59.898 45.833 17.23 0.00 0.00 3.67
2697 7251 1.375908 TTTGCGTGCCTCCTGCTAG 60.376 57.895 0.00 0.00 42.00 3.42
2728 7282 7.775053 ATTATGGTTTGCTCCACTAAAAAGA 57.225 32.000 0.00 0.00 40.51 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.