Multiple sequence alignment - TraesCS5B01G277800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G277800 chr5B 100.000 2273 0 0 1 2273 463919687 463917415 0.000000e+00 4198.0
1 TraesCS5B01G277800 chr5B 89.229 752 64 10 1500 2244 463937376 463936635 0.000000e+00 924.0
2 TraesCS5B01G277800 chr5B 89.901 604 34 12 862 1459 463912520 463911938 0.000000e+00 752.0
3 TraesCS5B01G277800 chr5B 85.344 655 57 19 693 1344 463945365 463944747 1.900000e-180 641.0
4 TraesCS5B01G277800 chr5B 89.130 460 39 6 1478 1928 463944300 463943843 1.520000e-156 562.0
5 TraesCS5B01G277800 chr5B 81.988 161 19 8 411 561 463970232 463970392 6.590000e-26 128.0
6 TraesCS5B01G277800 chr5B 82.090 134 14 5 709 840 463912638 463912513 3.090000e-19 106.0
7 TraesCS5B01G277800 chr5B 89.655 58 6 0 414 471 463912923 463912866 8.710000e-10 75.0
8 TraesCS5B01G277800 chr5A 87.040 1412 105 40 595 1973 487919051 487917685 0.000000e+00 1522.0
9 TraesCS5B01G277800 chr5A 91.232 901 50 14 856 1748 487925069 487924190 0.000000e+00 1199.0
10 TraesCS5B01G277800 chr5A 86.681 901 79 20 1410 2273 487947593 487946697 0.000000e+00 961.0
11 TraesCS5B01G277800 chr5A 89.574 681 60 8 1478 2149 488008081 488007403 0.000000e+00 854.0
12 TraesCS5B01G277800 chr5A 85.905 823 82 15 1457 2273 487984131 487983337 0.000000e+00 846.0
13 TraesCS5B01G277800 chr5A 87.517 721 47 13 701 1417 487949244 487948563 0.000000e+00 793.0
14 TraesCS5B01G277800 chr5A 85.831 614 58 11 766 1377 487985127 487984541 1.920000e-175 625.0
15 TraesCS5B01G277800 chr5A 86.347 542 56 9 1740 2273 487924126 487923595 1.960000e-160 575.0
16 TraesCS5B01G277800 chr5A 86.456 539 46 14 1448 1977 487940183 487939663 1.180000e-157 566.0
17 TraesCS5B01G277800 chr5A 83.562 584 51 15 862 1438 487940963 487940418 2.610000e-139 505.0
18 TraesCS5B01G277800 chr5A 94.139 273 12 4 533 803 487925351 487925081 1.620000e-111 412.0
19 TraesCS5B01G277800 chr5A 85.921 277 27 10 695 964 488009150 488008879 3.700000e-73 285.0
20 TraesCS5B01G277800 chr5A 80.333 300 31 18 557 840 487941243 487940956 3.830000e-48 202.0
21 TraesCS5B01G277800 chr5A 82.031 128 11 9 414 530 487943091 487942965 5.170000e-17 99.0
22 TraesCS5B01G277800 chr5A 93.103 58 4 0 414 471 487919228 487919171 4.020000e-13 86.1
23 TraesCS5B01G277800 chr5A 95.000 40 2 0 736 775 487985196 487985157 1.880000e-06 63.9
24 TraesCS5B01G277800 chr5D 85.971 1333 110 33 862 2174 385978682 385977407 0.000000e+00 1354.0
25 TraesCS5B01G277800 chr5D 82.292 1248 94 57 414 1621 386036429 386035269 0.000000e+00 963.0
26 TraesCS5B01G277800 chr5D 90.029 682 55 7 1478 2148 386066615 386065936 0.000000e+00 870.0
27 TraesCS5B01G277800 chr5D 85.749 835 94 16 1448 2273 386057282 386056464 0.000000e+00 859.0
28 TraesCS5B01G277800 chr5D 84.286 700 65 22 1608 2272 386035243 386034554 1.900000e-180 641.0
29 TraesCS5B01G277800 chr5D 85.811 592 55 14 736 1320 386046328 386045759 3.230000e-168 601.0
30 TraesCS5B01G277800 chr5D 90.640 406 34 4 6 408 301438257 301438661 9.240000e-149 536.0
31 TraesCS5B01G277800 chr5D 89.512 410 38 5 6 411 526965927 526965519 4.330000e-142 514.0
32 TraesCS5B01G277800 chr2B 93.415 410 25 1 6 413 703797936 703798345 6.940000e-170 606.0
33 TraesCS5B01G277800 chr2B 89.713 418 37 4 1 412 26940630 26941047 1.550000e-146 529.0
34 TraesCS5B01G277800 chr6B 92.457 411 28 2 6 413 687206340 687205930 3.250000e-163 584.0
35 TraesCS5B01G277800 chr7D 90.799 413 31 5 6 411 185381415 185381003 1.540000e-151 545.0
36 TraesCS5B01G277800 chr7D 89.461 408 41 2 6 411 79257761 79257354 4.330000e-142 514.0
37 TraesCS5B01G277800 chr7D 89.487 409 40 3 6 411 79321999 79321591 4.330000e-142 514.0
38 TraesCS5B01G277800 chr7D 97.436 39 1 0 2132 2170 193125967 193125929 1.460000e-07 67.6
39 TraesCS5B01G277800 chr7A 89.260 419 38 5 1 413 51648571 51648988 3.350000e-143 518.0
40 TraesCS5B01G277800 chr3D 79.111 675 95 28 709 1371 334163164 334162524 7.510000e-115 424.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G277800 chr5B 463917415 463919687 2272 True 4198.000000 4198 100.000000 1 2273 1 chr5B.!!$R1 2272
1 TraesCS5B01G277800 chr5B 463936635 463937376 741 True 924.000000 924 89.229000 1500 2244 1 chr5B.!!$R2 744
2 TraesCS5B01G277800 chr5B 463943843 463945365 1522 True 601.500000 641 87.237000 693 1928 2 chr5B.!!$R4 1235
3 TraesCS5B01G277800 chr5B 463911938 463912923 985 True 311.000000 752 87.215333 414 1459 3 chr5B.!!$R3 1045
4 TraesCS5B01G277800 chr5A 487917685 487919228 1543 True 804.050000 1522 90.071500 414 1973 2 chr5A.!!$R1 1559
5 TraesCS5B01G277800 chr5A 487923595 487925351 1756 True 728.666667 1199 90.572667 533 2273 3 chr5A.!!$R2 1740
6 TraesCS5B01G277800 chr5A 488007403 488009150 1747 True 569.500000 854 87.747500 695 2149 2 chr5A.!!$R5 1454
7 TraesCS5B01G277800 chr5A 487939663 487949244 9581 True 521.000000 961 84.430000 414 2273 6 chr5A.!!$R3 1859
8 TraesCS5B01G277800 chr5A 487983337 487985196 1859 True 511.633333 846 88.912000 736 2273 3 chr5A.!!$R4 1537
9 TraesCS5B01G277800 chr5D 385977407 385978682 1275 True 1354.000000 1354 85.971000 862 2174 1 chr5D.!!$R1 1312
10 TraesCS5B01G277800 chr5D 386065936 386066615 679 True 870.000000 870 90.029000 1478 2148 1 chr5D.!!$R4 670
11 TraesCS5B01G277800 chr5D 386056464 386057282 818 True 859.000000 859 85.749000 1448 2273 1 chr5D.!!$R3 825
12 TraesCS5B01G277800 chr5D 386034554 386036429 1875 True 802.000000 963 83.289000 414 2272 2 chr5D.!!$R6 1858
13 TraesCS5B01G277800 chr5D 386045759 386046328 569 True 601.000000 601 85.811000 736 1320 1 chr5D.!!$R2 584
14 TraesCS5B01G277800 chr3D 334162524 334163164 640 True 424.000000 424 79.111000 709 1371 1 chr3D.!!$R1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.0293 CGTGGGCAGTGACAACAAAG 59.971 55.0 3.88 0.0 0.0 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 3215 0.621082 TCAATAACATGGTCCCGGCA 59.379 50.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.944663 TTAGCAAGTTATGTGAAACTTTTACTG 57.055 29.630 0.00 0.00 45.20 2.74
46 47 8.220755 AGCAAGTTATGTGAAACTTTTACTGA 57.779 30.769 0.00 0.00 45.20 3.41
47 48 8.850156 AGCAAGTTATGTGAAACTTTTACTGAT 58.150 29.630 0.00 0.00 45.20 2.90
56 57 9.944663 TGTGAAACTTTTACTGATAAATGTGAC 57.055 29.630 0.00 0.00 38.19 3.67
57 58 9.394477 GTGAAACTTTTACTGATAAATGTGACC 57.606 33.333 0.00 0.00 38.19 4.02
58 59 9.126151 TGAAACTTTTACTGATAAATGTGACCA 57.874 29.630 0.00 0.00 38.19 4.02
59 60 9.612620 GAAACTTTTACTGATAAATGTGACCAG 57.387 33.333 0.00 0.00 38.19 4.00
60 61 8.691661 AACTTTTACTGATAAATGTGACCAGT 57.308 30.769 0.00 0.00 38.19 4.00
61 62 9.787435 AACTTTTACTGATAAATGTGACCAGTA 57.213 29.630 0.00 0.00 38.19 2.74
62 63 9.436957 ACTTTTACTGATAAATGTGACCAGTAG 57.563 33.333 0.00 0.00 40.20 2.57
63 64 8.786826 TTTTACTGATAAATGTGACCAGTAGG 57.213 34.615 0.00 0.00 40.20 3.18
64 65 7.727578 TTACTGATAAATGTGACCAGTAGGA 57.272 36.000 0.00 0.00 40.20 2.94
65 66 5.978814 ACTGATAAATGTGACCAGTAGGAC 58.021 41.667 0.00 0.00 36.44 3.85
66 67 5.104900 ACTGATAAATGTGACCAGTAGGACC 60.105 44.000 0.00 0.00 36.44 4.46
67 68 4.163458 TGATAAATGTGACCAGTAGGACCC 59.837 45.833 0.00 0.00 38.69 4.46
68 69 1.286248 AATGTGACCAGTAGGACCCC 58.714 55.000 0.00 0.00 38.69 4.95
69 70 0.118346 ATGTGACCAGTAGGACCCCA 59.882 55.000 0.00 0.00 38.69 4.96
70 71 0.118346 TGTGACCAGTAGGACCCCAT 59.882 55.000 0.00 0.00 38.69 4.00
71 72 0.541863 GTGACCAGTAGGACCCCATG 59.458 60.000 0.00 0.00 38.69 3.66
72 73 0.118346 TGACCAGTAGGACCCCATGT 59.882 55.000 0.00 0.00 38.69 3.21
73 74 0.831307 GACCAGTAGGACCCCATGTC 59.169 60.000 0.00 0.00 43.67 3.06
74 75 0.118346 ACCAGTAGGACCCCATGTCA 59.882 55.000 0.00 0.00 46.38 3.58
75 76 0.833287 CCAGTAGGACCCCATGTCAG 59.167 60.000 0.00 0.00 46.38 3.51
76 77 0.833287 CAGTAGGACCCCATGTCAGG 59.167 60.000 0.00 0.00 46.38 3.86
77 78 0.716591 AGTAGGACCCCATGTCAGGA 59.283 55.000 0.98 0.00 46.38 3.86
78 79 1.123928 GTAGGACCCCATGTCAGGAG 58.876 60.000 0.98 0.00 46.38 3.69
79 80 0.031111 TAGGACCCCATGTCAGGAGG 60.031 60.000 0.98 0.00 46.38 4.30
80 81 1.306997 GGACCCCATGTCAGGAGGA 60.307 63.158 0.00 0.00 46.38 3.71
81 82 0.914417 GGACCCCATGTCAGGAGGAA 60.914 60.000 0.00 0.00 46.38 3.36
82 83 0.991920 GACCCCATGTCAGGAGGAAA 59.008 55.000 0.00 0.00 43.85 3.13
83 84 0.995024 ACCCCATGTCAGGAGGAAAG 59.005 55.000 0.00 0.00 0.00 2.62
84 85 1.289160 CCCCATGTCAGGAGGAAAGA 58.711 55.000 0.00 0.00 0.00 2.52
85 86 1.635487 CCCCATGTCAGGAGGAAAGAA 59.365 52.381 0.00 0.00 0.00 2.52
86 87 2.619074 CCCCATGTCAGGAGGAAAGAAC 60.619 54.545 0.00 0.00 0.00 3.01
87 88 2.040278 CCCATGTCAGGAGGAAAGAACA 59.960 50.000 0.00 0.00 0.00 3.18
88 89 3.077359 CCATGTCAGGAGGAAAGAACAC 58.923 50.000 0.00 0.00 0.00 3.32
89 90 3.496692 CCATGTCAGGAGGAAAGAACACA 60.497 47.826 0.00 0.00 0.00 3.72
90 91 3.194005 TGTCAGGAGGAAAGAACACAC 57.806 47.619 0.00 0.00 0.00 3.82
91 92 2.503765 TGTCAGGAGGAAAGAACACACA 59.496 45.455 0.00 0.00 0.00 3.72
92 93 3.054728 TGTCAGGAGGAAAGAACACACAA 60.055 43.478 0.00 0.00 0.00 3.33
93 94 3.945285 GTCAGGAGGAAAGAACACACAAA 59.055 43.478 0.00 0.00 0.00 2.83
94 95 4.398044 GTCAGGAGGAAAGAACACACAAAA 59.602 41.667 0.00 0.00 0.00 2.44
95 96 5.013547 TCAGGAGGAAAGAACACACAAAAA 58.986 37.500 0.00 0.00 0.00 1.94
120 121 9.646522 AAAAGAAAATAGGATGTGGCATATACT 57.353 29.630 13.85 13.85 0.00 2.12
121 122 9.646522 AAAGAAAATAGGATGTGGCATATACTT 57.353 29.630 14.60 0.00 0.00 2.24
122 123 9.646522 AAGAAAATAGGATGTGGCATATACTTT 57.353 29.630 14.60 3.87 0.00 2.66
123 124 9.071276 AGAAAATAGGATGTGGCATATACTTTG 57.929 33.333 14.60 0.00 0.00 2.77
124 125 6.824305 AATAGGATGTGGCATATACTTTGC 57.176 37.500 14.60 0.00 39.41 3.68
125 126 4.443978 AGGATGTGGCATATACTTTGCT 57.556 40.909 2.67 0.00 40.03 3.91
126 127 4.139786 AGGATGTGGCATATACTTTGCTG 58.860 43.478 2.67 0.00 40.03 4.41
127 128 4.136796 GGATGTGGCATATACTTTGCTGA 58.863 43.478 0.00 0.00 40.03 4.26
128 129 4.214971 GGATGTGGCATATACTTTGCTGAG 59.785 45.833 0.00 0.00 40.03 3.35
129 130 4.220693 TGTGGCATATACTTTGCTGAGT 57.779 40.909 0.00 0.00 40.03 3.41
130 131 3.940852 TGTGGCATATACTTTGCTGAGTG 59.059 43.478 0.00 0.00 40.03 3.51
131 132 3.941483 GTGGCATATACTTTGCTGAGTGT 59.059 43.478 0.00 0.00 40.03 3.55
132 133 4.034510 GTGGCATATACTTTGCTGAGTGTC 59.965 45.833 0.00 0.00 40.03 3.67
133 134 3.246226 GGCATATACTTTGCTGAGTGTCG 59.754 47.826 3.26 0.00 40.03 4.35
134 135 3.865745 GCATATACTTTGCTGAGTGTCGT 59.134 43.478 3.26 0.00 37.14 4.34
135 136 5.041287 GCATATACTTTGCTGAGTGTCGTA 58.959 41.667 3.26 0.00 37.14 3.43
136 137 5.051641 GCATATACTTTGCTGAGTGTCGTAC 60.052 44.000 3.26 0.00 37.14 3.67
137 138 1.767289 ACTTTGCTGAGTGTCGTACG 58.233 50.000 9.53 9.53 0.00 3.67
138 139 1.060713 CTTTGCTGAGTGTCGTACGG 58.939 55.000 16.52 0.00 0.00 4.02
139 140 0.942410 TTTGCTGAGTGTCGTACGGC 60.942 55.000 14.12 14.12 0.00 5.68
140 141 2.874780 GCTGAGTGTCGTACGGCG 60.875 66.667 16.05 4.80 43.01 6.46
141 142 2.202440 CTGAGTGTCGTACGGCGG 60.202 66.667 16.05 1.86 41.72 6.13
142 143 4.409218 TGAGTGTCGTACGGCGGC 62.409 66.667 16.05 10.66 46.88 6.53
143 144 4.112341 GAGTGTCGTACGGCGGCT 62.112 66.667 16.05 15.46 46.81 5.52
144 145 4.112341 AGTGTCGTACGGCGGCTC 62.112 66.667 16.05 5.78 46.81 4.70
145 146 4.112341 GTGTCGTACGGCGGCTCT 62.112 66.667 16.05 0.00 46.81 4.09
146 147 3.807538 TGTCGTACGGCGGCTCTC 61.808 66.667 16.05 0.00 46.81 3.20
147 148 4.883300 GTCGTACGGCGGCTCTCG 62.883 72.222 16.52 8.72 42.76 4.04
150 151 3.204827 GTACGGCGGCTCTCGGTA 61.205 66.667 13.24 0.00 39.69 4.02
151 152 2.438254 TACGGCGGCTCTCGGTAA 60.438 61.111 13.24 0.00 39.69 2.85
152 153 2.045708 TACGGCGGCTCTCGGTAAA 61.046 57.895 13.24 0.00 39.69 2.01
153 154 1.996786 TACGGCGGCTCTCGGTAAAG 61.997 60.000 13.24 0.00 39.69 1.85
154 155 2.890371 GGCGGCTCTCGGTAAAGA 59.110 61.111 0.00 0.00 39.69 2.52
155 156 1.217244 GGCGGCTCTCGGTAAAGAA 59.783 57.895 0.00 0.00 39.69 2.52
156 157 1.082679 GGCGGCTCTCGGTAAAGAAC 61.083 60.000 0.00 0.00 39.69 3.01
157 158 1.411493 GCGGCTCTCGGTAAAGAACG 61.411 60.000 0.00 0.00 39.69 3.95
158 159 1.411493 CGGCTCTCGGTAAAGAACGC 61.411 60.000 0.00 0.00 34.75 4.84
159 160 0.389426 GGCTCTCGGTAAAGAACGCA 60.389 55.000 0.00 0.00 0.00 5.24
160 161 0.992802 GCTCTCGGTAAAGAACGCAG 59.007 55.000 0.00 0.00 0.00 5.18
162 163 2.415090 GCTCTCGGTAAAGAACGCAGTA 60.415 50.000 0.00 0.00 45.00 2.74
163 164 3.829948 CTCTCGGTAAAGAACGCAGTAA 58.170 45.455 0.00 0.00 45.00 2.24
164 165 3.568538 TCTCGGTAAAGAACGCAGTAAC 58.431 45.455 0.00 0.00 45.00 2.50
165 166 3.254166 TCTCGGTAAAGAACGCAGTAACT 59.746 43.478 0.00 0.00 45.00 2.24
166 167 3.311106 TCGGTAAAGAACGCAGTAACTG 58.689 45.455 0.00 0.00 45.00 3.16
167 168 3.004629 TCGGTAAAGAACGCAGTAACTGA 59.995 43.478 0.00 0.00 45.00 3.41
168 169 3.924686 CGGTAAAGAACGCAGTAACTGAT 59.075 43.478 0.00 0.00 45.00 2.90
169 170 4.201589 CGGTAAAGAACGCAGTAACTGATG 60.202 45.833 0.00 0.00 45.00 3.07
170 171 4.092968 GGTAAAGAACGCAGTAACTGATGG 59.907 45.833 0.00 0.00 45.00 3.51
171 172 3.678056 AAGAACGCAGTAACTGATGGA 57.322 42.857 0.00 0.00 45.00 3.41
172 173 3.238108 AGAACGCAGTAACTGATGGAG 57.762 47.619 0.00 0.00 45.00 3.86
173 174 2.563179 AGAACGCAGTAACTGATGGAGT 59.437 45.455 0.00 0.00 45.00 3.85
174 175 2.656560 ACGCAGTAACTGATGGAGTC 57.343 50.000 0.00 0.00 41.94 3.36
175 176 1.135373 ACGCAGTAACTGATGGAGTCG 60.135 52.381 0.00 0.00 41.94 4.18
176 177 1.135373 CGCAGTAACTGATGGAGTCGT 60.135 52.381 0.00 0.00 31.73 4.34
177 178 2.531206 GCAGTAACTGATGGAGTCGTC 58.469 52.381 0.00 0.00 31.73 4.20
178 179 2.164624 GCAGTAACTGATGGAGTCGTCT 59.835 50.000 0.00 0.00 31.73 4.18
179 180 3.763902 CAGTAACTGATGGAGTCGTCTG 58.236 50.000 0.00 0.00 31.73 3.51
180 181 3.191581 CAGTAACTGATGGAGTCGTCTGT 59.808 47.826 0.00 2.26 41.03 3.41
181 182 3.827302 AGTAACTGATGGAGTCGTCTGTT 59.173 43.478 17.33 17.33 46.05 3.16
182 183 2.732412 ACTGATGGAGTCGTCTGTTG 57.268 50.000 0.00 0.00 37.68 3.33
183 184 1.337260 ACTGATGGAGTCGTCTGTTGC 60.337 52.381 0.00 0.00 37.68 4.17
184 185 0.388520 TGATGGAGTCGTCTGTTGCG 60.389 55.000 0.00 0.00 0.00 4.85
185 186 1.078759 GATGGAGTCGTCTGTTGCGG 61.079 60.000 0.00 0.00 0.00 5.69
186 187 2.432628 GGAGTCGTCTGTTGCGGG 60.433 66.667 0.00 0.00 0.00 6.13
187 188 3.112709 GAGTCGTCTGTTGCGGGC 61.113 66.667 0.00 0.00 0.00 6.13
212 213 3.972227 CCACGTGGCTCCTCTTTG 58.028 61.111 24.02 0.00 0.00 2.77
213 214 2.328099 CCACGTGGCTCCTCTTTGC 61.328 63.158 24.02 0.00 0.00 3.68
218 219 2.347490 GGCTCCTCTTTGCCGTGA 59.653 61.111 0.00 0.00 39.71 4.35
219 220 1.743252 GGCTCCTCTTTGCCGTGAG 60.743 63.158 0.00 0.00 39.71 3.51
220 221 2.394563 GCTCCTCTTTGCCGTGAGC 61.395 63.158 0.00 0.00 41.31 4.26
232 233 3.050275 GTGAGCGGCTTTCGGCTT 61.050 61.111 2.97 0.00 46.93 4.35
233 234 2.742372 TGAGCGGCTTTCGGCTTC 60.742 61.111 2.97 0.00 46.93 3.86
234 235 2.435059 GAGCGGCTTTCGGCTTCT 60.435 61.111 2.97 0.00 46.93 2.85
235 236 2.743928 AGCGGCTTTCGGCTTCTG 60.744 61.111 0.00 0.00 45.06 3.02
236 237 4.467062 GCGGCTTTCGGCTTCTGC 62.467 66.667 0.00 0.00 41.46 4.26
237 238 3.049674 CGGCTTTCGGCTTCTGCA 61.050 61.111 0.00 0.00 41.91 4.41
238 239 2.563427 GGCTTTCGGCTTCTGCAC 59.437 61.111 0.00 0.00 41.91 4.57
239 240 2.174349 GCTTTCGGCTTCTGCACG 59.826 61.111 0.00 0.00 41.91 5.34
240 241 2.863153 CTTTCGGCTTCTGCACGG 59.137 61.111 0.00 0.00 41.91 4.94
241 242 1.961277 CTTTCGGCTTCTGCACGGT 60.961 57.895 0.00 0.00 41.91 4.83
242 243 1.507141 CTTTCGGCTTCTGCACGGTT 61.507 55.000 0.00 0.00 41.91 4.44
243 244 1.098712 TTTCGGCTTCTGCACGGTTT 61.099 50.000 0.00 0.00 41.91 3.27
244 245 1.781025 TTCGGCTTCTGCACGGTTTG 61.781 55.000 0.00 0.00 41.91 2.93
258 259 4.627801 TTTGCCGTGCGGTGCCTA 62.628 61.111 12.46 0.00 37.65 3.93
259 260 3.910914 TTTGCCGTGCGGTGCCTAT 62.911 57.895 12.46 0.00 37.65 2.57
260 261 3.910914 TTGCCGTGCGGTGCCTATT 62.911 57.895 12.46 0.00 37.65 1.73
261 262 3.131478 GCCGTGCGGTGCCTATTT 61.131 61.111 12.46 0.00 37.65 1.40
262 263 2.791256 CCGTGCGGTGCCTATTTG 59.209 61.111 1.93 0.00 0.00 2.32
263 264 2.100216 CGTGCGGTGCCTATTTGC 59.900 61.111 0.00 0.00 0.00 3.68
264 265 2.489751 GTGCGGTGCCTATTTGCC 59.510 61.111 0.00 0.00 0.00 4.52
265 266 3.130819 TGCGGTGCCTATTTGCCG 61.131 61.111 0.00 0.00 46.17 5.69
266 267 3.131478 GCGGTGCCTATTTGCCGT 61.131 61.111 0.00 0.00 45.30 5.68
267 268 2.791256 CGGTGCCTATTTGCCGTG 59.209 61.111 0.00 0.00 39.41 4.94
268 269 2.760159 CGGTGCCTATTTGCCGTGG 61.760 63.158 0.00 0.00 39.41 4.94
269 270 2.414785 GGTGCCTATTTGCCGTGGG 61.415 63.158 0.00 0.00 0.00 4.61
280 281 2.203139 CCGTGGGCAGTGACAACA 60.203 61.111 3.88 0.00 0.00 3.33
281 282 1.821759 CCGTGGGCAGTGACAACAA 60.822 57.895 3.88 0.00 0.00 2.83
282 283 1.380403 CCGTGGGCAGTGACAACAAA 61.380 55.000 3.88 0.00 0.00 2.83
283 284 0.029300 CGTGGGCAGTGACAACAAAG 59.971 55.000 3.88 0.00 0.00 2.77
284 285 1.388547 GTGGGCAGTGACAACAAAGA 58.611 50.000 0.00 0.00 0.00 2.52
285 286 1.748493 GTGGGCAGTGACAACAAAGAA 59.252 47.619 0.00 0.00 0.00 2.52
286 287 2.023673 TGGGCAGTGACAACAAAGAAG 58.976 47.619 0.00 0.00 0.00 2.85
287 288 2.297701 GGGCAGTGACAACAAAGAAGA 58.702 47.619 0.00 0.00 0.00 2.87
288 289 2.033424 GGGCAGTGACAACAAAGAAGAC 59.967 50.000 0.00 0.00 0.00 3.01
289 290 2.682856 GGCAGTGACAACAAAGAAGACA 59.317 45.455 0.00 0.00 0.00 3.41
290 291 3.242870 GGCAGTGACAACAAAGAAGACAG 60.243 47.826 0.00 0.00 0.00 3.51
291 292 3.375299 GCAGTGACAACAAAGAAGACAGT 59.625 43.478 0.00 0.00 0.00 3.55
292 293 4.142600 GCAGTGACAACAAAGAAGACAGTT 60.143 41.667 0.00 0.00 0.00 3.16
293 294 5.619981 GCAGTGACAACAAAGAAGACAGTTT 60.620 40.000 0.00 0.00 0.00 2.66
294 295 6.024049 CAGTGACAACAAAGAAGACAGTTTC 58.976 40.000 0.00 0.00 0.00 2.78
295 296 5.123979 AGTGACAACAAAGAAGACAGTTTCC 59.876 40.000 0.00 0.00 0.00 3.13
296 297 5.123979 GTGACAACAAAGAAGACAGTTTCCT 59.876 40.000 0.00 0.00 0.00 3.36
297 298 5.123820 TGACAACAAAGAAGACAGTTTCCTG 59.876 40.000 0.00 0.00 44.68 3.86
307 308 3.733709 AGTTTCCTGTGAAGCTGGG 57.266 52.632 0.00 0.00 40.13 4.45
308 309 0.846693 AGTTTCCTGTGAAGCTGGGT 59.153 50.000 0.00 0.00 40.13 4.51
309 310 1.215423 AGTTTCCTGTGAAGCTGGGTT 59.785 47.619 0.00 0.00 40.13 4.11
310 311 2.031870 GTTTCCTGTGAAGCTGGGTTT 58.968 47.619 0.00 0.00 36.89 3.27
311 312 1.691196 TTCCTGTGAAGCTGGGTTTG 58.309 50.000 0.00 0.00 36.89 2.93
312 313 0.823356 TCCTGTGAAGCTGGGTTTGC 60.823 55.000 0.00 0.00 36.89 3.68
313 314 1.662044 CTGTGAAGCTGGGTTTGCC 59.338 57.895 0.00 0.00 0.00 4.52
314 315 2.133742 CTGTGAAGCTGGGTTTGCCG 62.134 60.000 0.00 0.00 34.97 5.69
315 316 1.896660 GTGAAGCTGGGTTTGCCGA 60.897 57.895 0.00 0.00 34.97 5.54
316 317 1.600636 TGAAGCTGGGTTTGCCGAG 60.601 57.895 0.00 0.00 42.66 4.63
317 318 1.302511 GAAGCTGGGTTTGCCGAGA 60.303 57.895 0.00 0.00 42.42 4.04
318 319 1.301677 GAAGCTGGGTTTGCCGAGAG 61.302 60.000 0.00 0.00 42.42 3.20
319 320 2.032681 GCTGGGTTTGCCGAGAGT 59.967 61.111 0.00 0.00 42.42 3.24
320 321 2.328099 GCTGGGTTTGCCGAGAGTG 61.328 63.158 0.00 0.00 42.42 3.51
321 322 1.371183 CTGGGTTTGCCGAGAGTGA 59.629 57.895 0.00 0.00 42.42 3.41
322 323 0.951040 CTGGGTTTGCCGAGAGTGAC 60.951 60.000 0.00 0.00 42.42 3.67
323 324 1.070786 GGGTTTGCCGAGAGTGACA 59.929 57.895 0.00 0.00 34.97 3.58
324 325 1.228657 GGGTTTGCCGAGAGTGACAC 61.229 60.000 0.00 0.00 34.97 3.67
325 326 0.249911 GGTTTGCCGAGAGTGACACT 60.250 55.000 8.12 8.12 0.00 3.55
326 327 1.140816 GTTTGCCGAGAGTGACACTC 58.859 55.000 25.27 25.27 45.38 3.51
339 340 5.464030 AGTGACACTCGGTAAAGTTATGT 57.536 39.130 1.07 0.00 0.00 2.29
340 341 5.850614 AGTGACACTCGGTAAAGTTATGTT 58.149 37.500 1.07 0.00 0.00 2.71
341 342 6.285990 AGTGACACTCGGTAAAGTTATGTTT 58.714 36.000 1.07 0.00 0.00 2.83
342 343 6.202188 AGTGACACTCGGTAAAGTTATGTTTG 59.798 38.462 1.07 0.00 0.00 2.93
343 344 5.049954 TGACACTCGGTAAAGTTATGTTTGC 60.050 40.000 0.00 0.00 0.00 3.68
344 345 4.214758 ACACTCGGTAAAGTTATGTTTGCC 59.785 41.667 0.00 0.00 38.46 4.52
349 350 4.719040 GGTAAAGTTATGTTTGCCGAGTG 58.281 43.478 0.00 0.00 33.25 3.51
350 351 4.214758 GGTAAAGTTATGTTTGCCGAGTGT 59.785 41.667 0.00 0.00 33.25 3.55
351 352 4.483476 AAAGTTATGTTTGCCGAGTGTC 57.517 40.909 0.00 0.00 0.00 3.67
352 353 2.423577 AGTTATGTTTGCCGAGTGTCC 58.576 47.619 0.00 0.00 0.00 4.02
353 354 1.127951 GTTATGTTTGCCGAGTGTCCG 59.872 52.381 0.00 0.00 0.00 4.79
354 355 0.319083 TATGTTTGCCGAGTGTCCGT 59.681 50.000 0.00 0.00 0.00 4.69
355 356 1.227999 ATGTTTGCCGAGTGTCCGTG 61.228 55.000 0.00 0.00 0.00 4.94
356 357 1.885850 GTTTGCCGAGTGTCCGTGT 60.886 57.895 0.00 0.00 0.00 4.49
357 358 1.153329 TTTGCCGAGTGTCCGTGTT 60.153 52.632 0.00 0.00 0.00 3.32
358 359 0.745128 TTTGCCGAGTGTCCGTGTTT 60.745 50.000 0.00 0.00 0.00 2.83
359 360 0.745128 TTGCCGAGTGTCCGTGTTTT 60.745 50.000 0.00 0.00 0.00 2.43
360 361 0.104487 TGCCGAGTGTCCGTGTTTTA 59.896 50.000 0.00 0.00 0.00 1.52
361 362 0.788391 GCCGAGTGTCCGTGTTTTAG 59.212 55.000 0.00 0.00 0.00 1.85
362 363 0.788391 CCGAGTGTCCGTGTTTTAGC 59.212 55.000 0.00 0.00 0.00 3.09
363 364 1.493772 CGAGTGTCCGTGTTTTAGCA 58.506 50.000 0.00 0.00 0.00 3.49
364 365 1.191647 CGAGTGTCCGTGTTTTAGCAC 59.808 52.381 0.00 0.00 36.12 4.40
365 366 2.480845 GAGTGTCCGTGTTTTAGCACT 58.519 47.619 0.00 0.00 39.51 4.40
366 367 2.475487 GAGTGTCCGTGTTTTAGCACTC 59.525 50.000 6.72 6.72 43.54 3.51
367 368 1.191647 GTGTCCGTGTTTTAGCACTCG 59.808 52.381 0.00 0.00 37.24 4.18
369 370 1.495951 CCGTGTTTTAGCACTCGGC 59.504 57.895 2.96 0.00 44.35 5.54
386 387 3.786101 CGAAGAGCATGACACCCG 58.214 61.111 0.00 0.00 0.00 5.28
387 388 1.811266 CGAAGAGCATGACACCCGG 60.811 63.158 0.00 0.00 0.00 5.73
388 389 2.045926 AAGAGCATGACACCCGGC 60.046 61.111 0.00 0.00 0.00 6.13
389 390 3.958147 AAGAGCATGACACCCGGCG 62.958 63.158 0.00 0.00 0.00 6.46
390 391 4.760047 GAGCATGACACCCGGCGT 62.760 66.667 6.01 0.00 0.00 5.68
391 392 3.365291 GAGCATGACACCCGGCGTA 62.365 63.158 6.01 0.00 0.00 4.42
392 393 3.192922 GCATGACACCCGGCGTAC 61.193 66.667 6.01 0.00 0.00 3.67
393 394 2.883730 CATGACACCCGGCGTACG 60.884 66.667 11.84 11.84 43.80 3.67
394 395 3.376078 ATGACACCCGGCGTACGT 61.376 61.111 17.90 0.00 42.24 3.57
395 396 3.346631 ATGACACCCGGCGTACGTC 62.347 63.158 17.90 14.42 42.24 4.34
396 397 4.041917 GACACCCGGCGTACGTCA 62.042 66.667 21.20 0.00 42.24 4.35
397 398 3.958822 GACACCCGGCGTACGTCAG 62.959 68.421 21.20 12.90 42.24 3.51
398 399 3.740397 CACCCGGCGTACGTCAGA 61.740 66.667 21.20 0.00 42.24 3.27
399 400 2.985282 ACCCGGCGTACGTCAGAA 60.985 61.111 21.20 0.00 42.24 3.02
400 401 2.345760 ACCCGGCGTACGTCAGAAT 61.346 57.895 21.20 0.00 42.24 2.40
401 402 1.153706 CCCGGCGTACGTCAGAATT 60.154 57.895 21.20 0.00 42.24 2.17
402 403 1.143969 CCCGGCGTACGTCAGAATTC 61.144 60.000 21.20 0.00 42.24 2.17
403 404 1.143969 CCGGCGTACGTCAGAATTCC 61.144 60.000 21.20 7.43 42.24 3.01
404 405 0.457166 CGGCGTACGTCAGAATTCCA 60.457 55.000 21.20 0.00 37.93 3.53
405 406 1.278238 GGCGTACGTCAGAATTCCAG 58.722 55.000 16.32 0.00 0.00 3.86
406 407 1.403780 GGCGTACGTCAGAATTCCAGT 60.404 52.381 16.32 0.16 0.00 4.00
407 408 2.159338 GGCGTACGTCAGAATTCCAGTA 60.159 50.000 16.32 0.00 0.00 2.74
408 409 3.106672 GCGTACGTCAGAATTCCAGTAG 58.893 50.000 17.90 0.00 0.00 2.57
409 410 3.427233 GCGTACGTCAGAATTCCAGTAGT 60.427 47.826 17.90 0.00 0.00 2.73
410 411 4.096311 CGTACGTCAGAATTCCAGTAGTG 58.904 47.826 7.22 0.00 0.00 2.74
411 412 4.142752 CGTACGTCAGAATTCCAGTAGTGA 60.143 45.833 7.22 0.00 0.00 3.41
412 413 4.866508 ACGTCAGAATTCCAGTAGTGAA 57.133 40.909 0.65 0.00 0.00 3.18
441 442 2.776312 TCTGCTTATCACGTCGATCC 57.224 50.000 0.00 0.00 35.39 3.36
449 450 2.521105 TCACGTCGATCCGATAGAGA 57.479 50.000 0.00 0.00 38.42 3.10
454 455 2.224549 CGTCGATCCGATAGAGAAGCTT 59.775 50.000 0.00 0.00 38.42 3.74
455 456 3.560503 GTCGATCCGATAGAGAAGCTTG 58.439 50.000 2.10 0.00 38.42 4.01
471 472 1.858091 CTTGAGAGTGTGCAGACGTT 58.142 50.000 8.52 0.36 0.00 3.99
520 535 2.899838 GCCACGTTGGTGCAGTGA 60.900 61.111 4.70 0.00 43.00 3.41
630 683 4.389890 TGCTGCAAGTTCAAGAAAACAT 57.610 36.364 0.00 0.00 35.30 2.71
701 774 1.581447 CTCCTTTGTTCCCAAGCGC 59.419 57.895 0.00 0.00 0.00 5.92
702 775 2.187599 CTCCTTTGTTCCCAAGCGCG 62.188 60.000 0.00 0.00 0.00 6.86
721 794 1.450312 CACCCCAGCACGAGAATCC 60.450 63.158 0.00 0.00 0.00 3.01
779 893 9.336171 GTTCAGAATCAGAATCTAATTAGCCTT 57.664 33.333 7.67 3.97 0.00 4.35
830 946 1.443872 CCCGATACCATACGAGCGC 60.444 63.158 0.00 0.00 0.00 5.92
942 1058 3.696051 AGAGCTTCTCAAGTGCAAAAACA 59.304 39.130 0.00 0.00 32.06 2.83
949 1079 0.805711 AAGTGCAAAAACACAGCGCC 60.806 50.000 2.29 0.00 43.23 6.53
987 1127 6.494666 TCCGAGAAACATATACCAATTCCT 57.505 37.500 0.00 0.00 0.00 3.36
1027 1170 0.687354 TTCTGGGTCAAGGAGCTCAC 59.313 55.000 17.19 4.59 0.00 3.51
1029 1172 1.461268 TGGGTCAAGGAGCTCACCA 60.461 57.895 19.47 12.51 0.00 4.17
1030 1173 0.842030 TGGGTCAAGGAGCTCACCAT 60.842 55.000 19.47 0.00 0.00 3.55
1113 1256 2.364973 TATGGCGAGGGCACTCCA 60.365 61.111 11.21 4.26 41.84 3.86
1158 1301 2.933287 ATGGGCGGGACCAAGACA 60.933 61.111 0.00 0.00 45.13 3.41
1228 1371 3.957435 ATCGAGTCCGGCAGGGTCA 62.957 63.158 2.05 0.00 38.33 4.02
1441 2939 1.113517 TCGACCATGCCCTAGCCTAC 61.114 60.000 0.00 0.00 38.69 3.18
1473 2971 6.413783 AAAAACTATCGAAACAAATGGGGT 57.586 33.333 0.00 0.00 0.00 4.95
1505 3013 3.864243 TCTCCCATTGAAATGCAAATGC 58.136 40.909 3.71 0.00 40.48 3.56
1536 3047 7.693969 ATCCCAGTTCTAAATTTGAGAAGTG 57.306 36.000 18.89 18.89 46.90 3.16
1537 3048 6.601332 TCCCAGTTCTAAATTTGAGAAGTGT 58.399 36.000 22.02 0.71 46.34 3.55
1571 3087 8.644216 TGTTAACTTACAAGGTACATCTCTTGA 58.356 33.333 14.22 0.00 41.94 3.02
1622 3185 6.017400 TGAATTCTGAAGATTCTGCAAACC 57.983 37.500 7.05 0.00 0.00 3.27
1627 3190 3.420893 TGAAGATTCTGCAAACCGGATT 58.579 40.909 9.46 0.00 0.00 3.01
1693 3262 6.780706 AGCAAGCATAATTATGTACCGTAC 57.219 37.500 23.14 1.40 36.11 3.67
1784 3446 3.070748 TGTAAGCAAATCAACTGCGCTA 58.929 40.909 9.73 0.00 44.75 4.26
1800 3462 0.037232 GCTAGGTCTTGCAGACGGTT 60.037 55.000 9.29 2.75 45.96 4.44
1822 3484 7.275341 CGGTTGCATGTATTTTTCATTGTGTAT 59.725 33.333 0.00 0.00 0.00 2.29
1912 3605 4.036734 ACTGTTTATGAACTTGTGCTGGTG 59.963 41.667 1.75 0.00 36.70 4.17
2030 3739 8.437575 TGGAGTAGATGTGAGTATGACTATGTA 58.562 37.037 0.00 0.00 0.00 2.29
2040 3749 8.026026 GTGAGTATGACTATGTACCATCTGATG 58.974 40.741 10.71 10.71 0.00 3.07
2072 3784 5.443283 ACTCCCTCCGTTTTATTTATTCCC 58.557 41.667 0.00 0.00 0.00 3.97
2082 3794 8.798402 CCGTTTTATTTATTCCCCATATTAGCA 58.202 33.333 0.00 0.00 0.00 3.49
2197 3935 6.494842 TGAAGTTGATTCTTTGTCTTTTCGG 58.505 36.000 0.00 0.00 38.83 4.30
2213 3951 2.720758 CGGACAGCTTTCGCGTCTG 61.721 63.158 5.77 11.91 42.32 3.51
2251 3990 0.169009 GCGAGCTACTTTGCTTTGGG 59.831 55.000 0.00 0.00 44.17 4.12
2260 3999 0.467804 TTTGCTTTGGGAAGGCCAAC 59.532 50.000 5.01 0.00 35.15 3.77
2265 4004 1.410882 CTTTGGGAAGGCCAACGAAAA 59.589 47.619 5.01 0.00 35.15 2.29
2267 4006 0.183971 TGGGAAGGCCAACGAAAAGA 59.816 50.000 5.01 0.00 35.15 2.52
2268 4007 0.881796 GGGAAGGCCAACGAAAAGAG 59.118 55.000 5.01 0.00 35.15 2.85
2269 4008 1.544759 GGGAAGGCCAACGAAAAGAGA 60.545 52.381 5.01 0.00 35.15 3.10
2271 4010 2.820197 GGAAGGCCAACGAAAAGAGAAT 59.180 45.455 5.01 0.00 0.00 2.40
2272 4011 3.366374 GGAAGGCCAACGAAAAGAGAATG 60.366 47.826 5.01 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.944663 CAGTAAAAGTTTCACATAACTTGCTAA 57.055 29.630 2.83 0.00 45.13 3.09
20 21 9.332502 TCAGTAAAAGTTTCACATAACTTGCTA 57.667 29.630 2.83 0.00 45.13 3.49
21 22 8.220755 TCAGTAAAAGTTTCACATAACTTGCT 57.779 30.769 2.83 0.75 45.13 3.91
30 31 9.944663 GTCACATTTATCAGTAAAAGTTTCACA 57.055 29.630 0.00 0.00 31.42 3.58
31 32 9.394477 GGTCACATTTATCAGTAAAAGTTTCAC 57.606 33.333 0.00 0.00 31.42 3.18
32 33 9.126151 TGGTCACATTTATCAGTAAAAGTTTCA 57.874 29.630 0.00 0.00 31.42 2.69
33 34 9.612620 CTGGTCACATTTATCAGTAAAAGTTTC 57.387 33.333 0.00 0.00 31.42 2.78
34 35 9.131791 ACTGGTCACATTTATCAGTAAAAGTTT 57.868 29.630 0.00 0.00 36.98 2.66
35 36 8.691661 ACTGGTCACATTTATCAGTAAAAGTT 57.308 30.769 0.00 0.00 36.98 2.66
36 37 9.436957 CTACTGGTCACATTTATCAGTAAAAGT 57.563 33.333 0.00 0.00 39.48 2.66
37 38 8.883731 CCTACTGGTCACATTTATCAGTAAAAG 58.116 37.037 0.00 0.00 39.48 2.27
38 39 8.598916 TCCTACTGGTCACATTTATCAGTAAAA 58.401 33.333 0.00 0.00 39.48 1.52
39 40 8.038944 GTCCTACTGGTCACATTTATCAGTAAA 58.961 37.037 0.00 0.00 39.48 2.01
40 41 7.364408 GGTCCTACTGGTCACATTTATCAGTAA 60.364 40.741 0.00 0.00 39.48 2.24
41 42 6.097839 GGTCCTACTGGTCACATTTATCAGTA 59.902 42.308 0.00 0.00 39.16 2.74
42 43 5.104900 GGTCCTACTGGTCACATTTATCAGT 60.105 44.000 0.00 0.00 41.02 3.41
43 44 5.360591 GGTCCTACTGGTCACATTTATCAG 58.639 45.833 0.00 0.00 34.23 2.90
44 45 4.163458 GGGTCCTACTGGTCACATTTATCA 59.837 45.833 0.00 0.00 34.23 2.15
45 46 4.444449 GGGGTCCTACTGGTCACATTTATC 60.444 50.000 0.00 0.00 34.23 1.75
46 47 3.458487 GGGGTCCTACTGGTCACATTTAT 59.542 47.826 0.00 0.00 34.23 1.40
47 48 2.841881 GGGGTCCTACTGGTCACATTTA 59.158 50.000 0.00 0.00 34.23 1.40
48 49 1.633945 GGGGTCCTACTGGTCACATTT 59.366 52.381 0.00 0.00 34.23 2.32
49 50 1.286248 GGGGTCCTACTGGTCACATT 58.714 55.000 0.00 0.00 34.23 2.71
50 51 0.118346 TGGGGTCCTACTGGTCACAT 59.882 55.000 0.00 0.00 34.23 3.21
51 52 0.118346 ATGGGGTCCTACTGGTCACA 59.882 55.000 0.00 0.00 34.23 3.58
52 53 0.541863 CATGGGGTCCTACTGGTCAC 59.458 60.000 0.00 0.00 34.23 3.67
53 54 0.118346 ACATGGGGTCCTACTGGTCA 59.882 55.000 0.00 0.00 34.23 4.02
54 55 0.831307 GACATGGGGTCCTACTGGTC 59.169 60.000 0.00 0.00 40.83 4.02
55 56 0.118346 TGACATGGGGTCCTACTGGT 59.882 55.000 0.00 0.00 46.38 4.00
56 57 0.833287 CTGACATGGGGTCCTACTGG 59.167 60.000 0.00 0.00 46.38 4.00
57 58 0.833287 CCTGACATGGGGTCCTACTG 59.167 60.000 0.00 0.00 46.38 2.74
58 59 0.716591 TCCTGACATGGGGTCCTACT 59.283 55.000 0.00 0.00 46.38 2.57
59 60 1.123928 CTCCTGACATGGGGTCCTAC 58.876 60.000 0.00 0.00 46.38 3.18
60 61 0.031111 CCTCCTGACATGGGGTCCTA 60.031 60.000 0.00 0.00 46.38 2.94
61 62 1.307343 CCTCCTGACATGGGGTCCT 60.307 63.158 0.00 0.00 46.38 3.85
62 63 0.914417 TTCCTCCTGACATGGGGTCC 60.914 60.000 0.00 0.00 46.38 4.46
64 65 0.995024 CTTTCCTCCTGACATGGGGT 59.005 55.000 0.00 0.00 0.00 4.95
65 66 1.289160 TCTTTCCTCCTGACATGGGG 58.711 55.000 0.00 0.00 0.00 4.96
66 67 2.040278 TGTTCTTTCCTCCTGACATGGG 59.960 50.000 0.00 0.00 0.00 4.00
67 68 3.077359 GTGTTCTTTCCTCCTGACATGG 58.923 50.000 0.00 0.00 0.00 3.66
68 69 3.499918 GTGTGTTCTTTCCTCCTGACATG 59.500 47.826 0.00 0.00 0.00 3.21
69 70 3.136443 TGTGTGTTCTTTCCTCCTGACAT 59.864 43.478 0.00 0.00 0.00 3.06
70 71 2.503765 TGTGTGTTCTTTCCTCCTGACA 59.496 45.455 0.00 0.00 0.00 3.58
71 72 3.194005 TGTGTGTTCTTTCCTCCTGAC 57.806 47.619 0.00 0.00 0.00 3.51
72 73 3.924114 TTGTGTGTTCTTTCCTCCTGA 57.076 42.857 0.00 0.00 0.00 3.86
73 74 4.981806 TTTTGTGTGTTCTTTCCTCCTG 57.018 40.909 0.00 0.00 0.00 3.86
94 95 9.646522 AGTATATGCCACATCCTATTTTCTTTT 57.353 29.630 0.00 0.00 0.00 2.27
95 96 9.646522 AAGTATATGCCACATCCTATTTTCTTT 57.353 29.630 0.00 0.00 0.00 2.52
96 97 9.646522 AAAGTATATGCCACATCCTATTTTCTT 57.353 29.630 0.00 0.00 0.00 2.52
97 98 9.071276 CAAAGTATATGCCACATCCTATTTTCT 57.929 33.333 0.00 0.00 0.00 2.52
98 99 7.809806 GCAAAGTATATGCCACATCCTATTTTC 59.190 37.037 0.00 0.00 37.85 2.29
99 100 7.506938 AGCAAAGTATATGCCACATCCTATTTT 59.493 33.333 0.00 0.00 44.91 1.82
100 101 7.006509 AGCAAAGTATATGCCACATCCTATTT 58.993 34.615 0.00 0.00 44.91 1.40
101 102 6.432162 CAGCAAAGTATATGCCACATCCTATT 59.568 38.462 0.00 0.00 44.91 1.73
102 103 5.942236 CAGCAAAGTATATGCCACATCCTAT 59.058 40.000 0.00 0.00 44.91 2.57
103 104 5.071653 TCAGCAAAGTATATGCCACATCCTA 59.928 40.000 0.00 0.00 44.91 2.94
104 105 4.139786 CAGCAAAGTATATGCCACATCCT 58.860 43.478 0.00 0.00 44.91 3.24
105 106 4.136796 TCAGCAAAGTATATGCCACATCC 58.863 43.478 0.00 0.00 44.91 3.51
106 107 4.818546 ACTCAGCAAAGTATATGCCACATC 59.181 41.667 0.00 0.00 44.91 3.06
107 108 4.577693 CACTCAGCAAAGTATATGCCACAT 59.422 41.667 0.00 0.00 44.91 3.21
108 109 3.940852 CACTCAGCAAAGTATATGCCACA 59.059 43.478 0.00 0.00 44.91 4.17
109 110 3.941483 ACACTCAGCAAAGTATATGCCAC 59.059 43.478 0.00 0.00 44.91 5.01
110 111 4.191544 GACACTCAGCAAAGTATATGCCA 58.808 43.478 0.00 0.00 44.91 4.92
111 112 3.246226 CGACACTCAGCAAAGTATATGCC 59.754 47.826 0.00 0.00 44.91 4.40
112 113 3.865745 ACGACACTCAGCAAAGTATATGC 59.134 43.478 0.00 0.00 44.15 3.14
113 114 5.171516 CGTACGACACTCAGCAAAGTATATG 59.828 44.000 10.44 0.00 0.00 1.78
114 115 5.271625 CGTACGACACTCAGCAAAGTATAT 58.728 41.667 10.44 0.00 0.00 0.86
115 116 4.437794 CCGTACGACACTCAGCAAAGTATA 60.438 45.833 18.76 0.00 0.00 1.47
116 117 3.499048 CGTACGACACTCAGCAAAGTAT 58.501 45.455 10.44 0.00 0.00 2.12
117 118 2.351060 CCGTACGACACTCAGCAAAGTA 60.351 50.000 18.76 0.00 0.00 2.24
118 119 1.602165 CCGTACGACACTCAGCAAAGT 60.602 52.381 18.76 0.00 0.00 2.66
119 120 1.060713 CCGTACGACACTCAGCAAAG 58.939 55.000 18.76 0.00 0.00 2.77
120 121 0.942410 GCCGTACGACACTCAGCAAA 60.942 55.000 18.76 0.00 0.00 3.68
121 122 1.372499 GCCGTACGACACTCAGCAA 60.372 57.895 18.76 0.00 0.00 3.91
122 123 2.257371 GCCGTACGACACTCAGCA 59.743 61.111 18.76 0.00 0.00 4.41
133 134 2.270297 TTTACCGAGAGCCGCCGTAC 62.270 60.000 0.00 0.00 36.84 3.67
134 135 1.996786 CTTTACCGAGAGCCGCCGTA 61.997 60.000 0.00 0.00 36.84 4.02
135 136 3.352338 CTTTACCGAGAGCCGCCGT 62.352 63.158 0.00 0.00 36.84 5.68
136 137 2.552585 TTCTTTACCGAGAGCCGCCG 62.553 60.000 0.00 0.00 36.84 6.46
137 138 1.082679 GTTCTTTACCGAGAGCCGCC 61.083 60.000 0.00 0.00 36.84 6.13
138 139 1.411493 CGTTCTTTACCGAGAGCCGC 61.411 60.000 0.00 0.00 36.84 6.53
139 140 1.411493 GCGTTCTTTACCGAGAGCCG 61.411 60.000 0.00 0.00 38.18 5.52
140 141 0.389426 TGCGTTCTTTACCGAGAGCC 60.389 55.000 0.00 0.00 0.00 4.70
141 142 0.992802 CTGCGTTCTTTACCGAGAGC 59.007 55.000 0.00 0.00 0.00 4.09
142 143 2.349297 ACTGCGTTCTTTACCGAGAG 57.651 50.000 0.00 0.00 0.00 3.20
143 144 3.254166 AGTTACTGCGTTCTTTACCGAGA 59.746 43.478 0.00 0.00 0.00 4.04
144 145 3.364023 CAGTTACTGCGTTCTTTACCGAG 59.636 47.826 0.00 0.00 0.00 4.63
145 146 3.004629 TCAGTTACTGCGTTCTTTACCGA 59.995 43.478 7.61 0.00 0.00 4.69
146 147 3.311106 TCAGTTACTGCGTTCTTTACCG 58.689 45.455 7.61 0.00 0.00 4.02
147 148 4.092968 CCATCAGTTACTGCGTTCTTTACC 59.907 45.833 7.61 0.00 0.00 2.85
148 149 4.927425 TCCATCAGTTACTGCGTTCTTTAC 59.073 41.667 7.61 0.00 0.00 2.01
149 150 5.142061 TCCATCAGTTACTGCGTTCTTTA 57.858 39.130 7.61 0.00 0.00 1.85
150 151 3.997021 CTCCATCAGTTACTGCGTTCTTT 59.003 43.478 7.61 0.00 0.00 2.52
151 152 3.006967 ACTCCATCAGTTACTGCGTTCTT 59.993 43.478 7.61 0.00 26.56 2.52
152 153 2.563179 ACTCCATCAGTTACTGCGTTCT 59.437 45.455 7.61 0.00 26.56 3.01
153 154 2.924290 GACTCCATCAGTTACTGCGTTC 59.076 50.000 7.61 0.00 34.41 3.95
154 155 2.671351 CGACTCCATCAGTTACTGCGTT 60.671 50.000 7.61 0.00 34.41 4.84
155 156 1.135373 CGACTCCATCAGTTACTGCGT 60.135 52.381 7.61 0.00 34.41 5.24
156 157 1.135373 ACGACTCCATCAGTTACTGCG 60.135 52.381 7.61 6.15 34.41 5.18
157 158 2.164624 AGACGACTCCATCAGTTACTGC 59.835 50.000 7.61 0.00 34.41 4.40
158 159 3.191581 ACAGACGACTCCATCAGTTACTG 59.808 47.826 5.94 5.94 34.41 2.74
159 160 3.422796 ACAGACGACTCCATCAGTTACT 58.577 45.455 0.00 0.00 34.41 2.24
160 161 3.851976 ACAGACGACTCCATCAGTTAC 57.148 47.619 0.00 0.00 34.41 2.50
161 162 3.614150 GCAACAGACGACTCCATCAGTTA 60.614 47.826 0.00 0.00 34.41 2.24
162 163 2.868044 GCAACAGACGACTCCATCAGTT 60.868 50.000 0.00 0.00 34.41 3.16
163 164 1.337260 GCAACAGACGACTCCATCAGT 60.337 52.381 0.00 0.00 38.45 3.41
164 165 1.354040 GCAACAGACGACTCCATCAG 58.646 55.000 0.00 0.00 0.00 2.90
165 166 0.388520 CGCAACAGACGACTCCATCA 60.389 55.000 0.00 0.00 0.00 3.07
166 167 1.078759 CCGCAACAGACGACTCCATC 61.079 60.000 0.00 0.00 0.00 3.51
167 168 1.079819 CCGCAACAGACGACTCCAT 60.080 57.895 0.00 0.00 0.00 3.41
168 169 2.338620 CCGCAACAGACGACTCCA 59.661 61.111 0.00 0.00 0.00 3.86
169 170 2.432628 CCCGCAACAGACGACTCC 60.433 66.667 0.00 0.00 0.00 3.85
170 171 3.112709 GCCCGCAACAGACGACTC 61.113 66.667 0.00 0.00 0.00 3.36
195 196 2.328099 GCAAAGAGGAGCCACGTGG 61.328 63.158 30.66 30.66 38.53 4.94
196 197 3.257933 GCAAAGAGGAGCCACGTG 58.742 61.111 9.08 9.08 0.00 4.49
202 203 2.394563 GCTCACGGCAAAGAGGAGC 61.395 63.158 0.00 0.00 43.41 4.70
203 204 2.097038 CGCTCACGGCAAAGAGGAG 61.097 63.158 0.00 0.00 41.91 3.69
204 205 2.048222 CGCTCACGGCAAAGAGGA 60.048 61.111 0.00 0.00 41.91 3.71
215 216 3.028366 GAAGCCGAAAGCCGCTCAC 62.028 63.158 0.00 0.00 45.47 3.51
216 217 2.742372 GAAGCCGAAAGCCGCTCA 60.742 61.111 0.00 0.00 45.47 4.26
217 218 2.435059 AGAAGCCGAAAGCCGCTC 60.435 61.111 0.00 0.00 45.47 5.03
218 219 2.743928 CAGAAGCCGAAAGCCGCT 60.744 61.111 0.00 0.00 45.47 5.52
219 220 4.467062 GCAGAAGCCGAAAGCCGC 62.467 66.667 0.00 0.00 45.47 6.53
220 221 3.049674 TGCAGAAGCCGAAAGCCG 61.050 61.111 0.00 0.00 45.47 5.52
221 222 2.563427 GTGCAGAAGCCGAAAGCC 59.437 61.111 0.00 0.00 45.47 4.35
222 223 2.174349 CGTGCAGAAGCCGAAAGC 59.826 61.111 0.00 0.00 41.13 3.51
223 224 1.507141 AACCGTGCAGAAGCCGAAAG 61.507 55.000 0.00 0.00 41.13 2.62
224 225 1.098712 AAACCGTGCAGAAGCCGAAA 61.099 50.000 0.00 0.00 41.13 3.46
225 226 1.525077 AAACCGTGCAGAAGCCGAA 60.525 52.632 0.00 0.00 41.13 4.30
226 227 2.110213 AAACCGTGCAGAAGCCGA 59.890 55.556 0.00 0.00 41.13 5.54
227 228 2.252260 CAAACCGTGCAGAAGCCG 59.748 61.111 0.00 0.00 41.13 5.52
241 242 3.910914 ATAGGCACCGCACGGCAAA 62.911 57.895 9.43 0.00 39.32 3.68
242 243 3.910914 AATAGGCACCGCACGGCAA 62.911 57.895 9.43 0.00 39.32 4.52
243 244 3.910914 AAATAGGCACCGCACGGCA 62.911 57.895 9.43 0.00 39.32 5.69
244 245 3.131478 AAATAGGCACCGCACGGC 61.131 61.111 9.43 0.00 39.32 5.68
245 246 2.791256 CAAATAGGCACCGCACGG 59.209 61.111 7.71 7.71 42.03 4.94
246 247 2.100216 GCAAATAGGCACCGCACG 59.900 61.111 0.00 0.00 0.00 5.34
247 248 2.489751 GGCAAATAGGCACCGCAC 59.510 61.111 0.00 0.00 43.51 5.34
248 249 3.130819 CGGCAAATAGGCACCGCA 61.131 61.111 0.00 0.00 44.47 5.69
251 252 2.414785 CCCACGGCAAATAGGCACC 61.415 63.158 0.00 0.00 44.47 5.01
252 253 3.196648 CCCACGGCAAATAGGCAC 58.803 61.111 0.00 0.00 44.47 5.01
263 264 1.380403 TTTGTTGTCACTGCCCACGG 61.380 55.000 0.00 0.00 0.00 4.94
264 265 0.029300 CTTTGTTGTCACTGCCCACG 59.971 55.000 0.00 0.00 0.00 4.94
265 266 1.388547 TCTTTGTTGTCACTGCCCAC 58.611 50.000 0.00 0.00 0.00 4.61
266 267 2.023673 CTTCTTTGTTGTCACTGCCCA 58.976 47.619 0.00 0.00 0.00 5.36
267 268 2.033424 GTCTTCTTTGTTGTCACTGCCC 59.967 50.000 0.00 0.00 0.00 5.36
268 269 2.682856 TGTCTTCTTTGTTGTCACTGCC 59.317 45.455 0.00 0.00 0.00 4.85
269 270 3.375299 ACTGTCTTCTTTGTTGTCACTGC 59.625 43.478 0.00 0.00 0.00 4.40
270 271 5.551760 AACTGTCTTCTTTGTTGTCACTG 57.448 39.130 0.00 0.00 0.00 3.66
271 272 5.123979 GGAAACTGTCTTCTTTGTTGTCACT 59.876 40.000 0.00 0.00 0.00 3.41
272 273 5.123979 AGGAAACTGTCTTCTTTGTTGTCAC 59.876 40.000 0.00 0.00 41.13 3.67
273 274 5.253330 AGGAAACTGTCTTCTTTGTTGTCA 58.747 37.500 0.00 0.00 41.13 3.58
274 275 5.819825 AGGAAACTGTCTTCTTTGTTGTC 57.180 39.130 0.00 0.00 41.13 3.18
289 290 0.846693 ACCCAGCTTCACAGGAAACT 59.153 50.000 0.00 0.00 46.44 2.66
290 291 1.692411 AACCCAGCTTCACAGGAAAC 58.308 50.000 0.00 0.00 31.35 2.78
291 292 2.031120 CAAACCCAGCTTCACAGGAAA 58.969 47.619 0.00 0.00 31.35 3.13
292 293 1.691196 CAAACCCAGCTTCACAGGAA 58.309 50.000 0.00 0.00 0.00 3.36
293 294 0.823356 GCAAACCCAGCTTCACAGGA 60.823 55.000 0.00 0.00 0.00 3.86
294 295 1.662044 GCAAACCCAGCTTCACAGG 59.338 57.895 0.00 0.00 0.00 4.00
295 296 1.662044 GGCAAACCCAGCTTCACAG 59.338 57.895 0.00 0.00 0.00 3.66
296 297 2.192861 CGGCAAACCCAGCTTCACA 61.193 57.895 0.00 0.00 0.00 3.58
297 298 1.856265 CTCGGCAAACCCAGCTTCAC 61.856 60.000 0.00 0.00 0.00 3.18
298 299 1.600636 CTCGGCAAACCCAGCTTCA 60.601 57.895 0.00 0.00 0.00 3.02
299 300 1.301677 CTCTCGGCAAACCCAGCTTC 61.302 60.000 0.00 0.00 0.00 3.86
300 301 1.302832 CTCTCGGCAAACCCAGCTT 60.303 57.895 0.00 0.00 0.00 3.74
301 302 2.348998 CTCTCGGCAAACCCAGCT 59.651 61.111 0.00 0.00 0.00 4.24
302 303 2.032681 ACTCTCGGCAAACCCAGC 59.967 61.111 0.00 0.00 0.00 4.85
303 304 0.951040 GTCACTCTCGGCAAACCCAG 60.951 60.000 0.00 0.00 0.00 4.45
304 305 1.070786 GTCACTCTCGGCAAACCCA 59.929 57.895 0.00 0.00 0.00 4.51
305 306 1.070786 TGTCACTCTCGGCAAACCC 59.929 57.895 0.00 0.00 0.00 4.11
306 307 0.249911 AGTGTCACTCTCGGCAAACC 60.250 55.000 0.00 0.00 0.00 3.27
307 308 1.140816 GAGTGTCACTCTCGGCAAAC 58.859 55.000 23.25 0.00 41.88 2.93
308 309 3.588277 GAGTGTCACTCTCGGCAAA 57.412 52.632 23.25 0.00 41.88 3.68
314 315 3.919223 ACTTTACCGAGTGTCACTCTC 57.081 47.619 26.46 8.66 42.92 3.20
315 316 5.243283 ACATAACTTTACCGAGTGTCACTCT 59.757 40.000 26.46 14.15 42.92 3.24
316 317 5.467705 ACATAACTTTACCGAGTGTCACTC 58.532 41.667 21.13 21.13 41.71 3.51
317 318 5.464030 ACATAACTTTACCGAGTGTCACT 57.536 39.130 4.81 4.81 0.00 3.41
318 319 6.360329 CAAACATAACTTTACCGAGTGTCAC 58.640 40.000 0.00 0.00 0.00 3.67
319 320 5.049954 GCAAACATAACTTTACCGAGTGTCA 60.050 40.000 0.00 0.00 0.00 3.58
320 321 5.379827 GCAAACATAACTTTACCGAGTGTC 58.620 41.667 0.00 0.00 0.00 3.67
321 322 4.214758 GGCAAACATAACTTTACCGAGTGT 59.785 41.667 0.00 0.00 0.00 3.55
322 323 4.668177 CGGCAAACATAACTTTACCGAGTG 60.668 45.833 0.00 0.00 40.98 3.51
323 324 3.434299 CGGCAAACATAACTTTACCGAGT 59.566 43.478 0.00 0.00 40.98 4.18
324 325 3.680937 TCGGCAAACATAACTTTACCGAG 59.319 43.478 2.56 0.00 41.89 4.63
325 326 3.661944 TCGGCAAACATAACTTTACCGA 58.338 40.909 2.56 2.56 43.65 4.69
326 327 3.434299 ACTCGGCAAACATAACTTTACCG 59.566 43.478 0.00 0.00 40.19 4.02
327 328 4.214758 ACACTCGGCAAACATAACTTTACC 59.785 41.667 0.00 0.00 0.00 2.85
328 329 5.352643 ACACTCGGCAAACATAACTTTAC 57.647 39.130 0.00 0.00 0.00 2.01
329 330 4.453136 GGACACTCGGCAAACATAACTTTA 59.547 41.667 0.00 0.00 0.00 1.85
330 331 3.252458 GGACACTCGGCAAACATAACTTT 59.748 43.478 0.00 0.00 0.00 2.66
331 332 2.812011 GGACACTCGGCAAACATAACTT 59.188 45.455 0.00 0.00 0.00 2.66
332 333 2.423577 GGACACTCGGCAAACATAACT 58.576 47.619 0.00 0.00 0.00 2.24
333 334 1.127951 CGGACACTCGGCAAACATAAC 59.872 52.381 0.00 0.00 0.00 1.89
334 335 1.270412 ACGGACACTCGGCAAACATAA 60.270 47.619 0.00 0.00 0.00 1.90
335 336 0.319083 ACGGACACTCGGCAAACATA 59.681 50.000 0.00 0.00 0.00 2.29
336 337 1.070786 ACGGACACTCGGCAAACAT 59.929 52.632 0.00 0.00 0.00 2.71
337 338 1.885388 CACGGACACTCGGCAAACA 60.885 57.895 0.00 0.00 0.00 2.83
338 339 1.433837 AACACGGACACTCGGCAAAC 61.434 55.000 0.00 0.00 0.00 2.93
339 340 0.745128 AAACACGGACACTCGGCAAA 60.745 50.000 0.00 0.00 0.00 3.68
340 341 0.745128 AAAACACGGACACTCGGCAA 60.745 50.000 0.00 0.00 0.00 4.52
341 342 0.104487 TAAAACACGGACACTCGGCA 59.896 50.000 0.00 0.00 0.00 5.69
342 343 0.788391 CTAAAACACGGACACTCGGC 59.212 55.000 0.00 0.00 0.00 5.54
343 344 0.788391 GCTAAAACACGGACACTCGG 59.212 55.000 0.00 0.00 0.00 4.63
344 345 1.191647 GTGCTAAAACACGGACACTCG 59.808 52.381 0.00 0.00 0.00 4.18
345 346 2.475487 GAGTGCTAAAACACGGACACTC 59.525 50.000 5.32 5.32 45.45 3.51
346 347 2.480845 GAGTGCTAAAACACGGACACT 58.519 47.619 0.00 0.00 45.45 3.55
347 348 1.191647 CGAGTGCTAAAACACGGACAC 59.808 52.381 0.00 0.00 45.45 3.67
348 349 1.493772 CGAGTGCTAAAACACGGACA 58.506 50.000 0.00 0.00 45.45 4.02
352 353 1.129809 CGCCGAGTGCTAAAACACG 59.870 57.895 0.00 0.00 45.45 4.49
353 354 0.863144 TTCGCCGAGTGCTAAAACAC 59.137 50.000 0.00 0.00 41.02 3.32
354 355 1.144969 CTTCGCCGAGTGCTAAAACA 58.855 50.000 0.00 0.00 38.05 2.83
355 356 1.390463 CTCTTCGCCGAGTGCTAAAAC 59.610 52.381 0.00 0.00 38.05 2.43
356 357 1.710013 CTCTTCGCCGAGTGCTAAAA 58.290 50.000 0.00 0.00 38.05 1.52
357 358 0.736325 GCTCTTCGCCGAGTGCTAAA 60.736 55.000 0.00 0.00 38.05 1.85
358 359 1.153823 GCTCTTCGCCGAGTGCTAA 60.154 57.895 0.00 0.00 38.05 3.09
359 360 1.667154 ATGCTCTTCGCCGAGTGCTA 61.667 55.000 8.87 0.00 37.14 3.49
360 361 3.011635 ATGCTCTTCGCCGAGTGCT 62.012 57.895 8.87 0.00 37.14 4.40
361 362 2.510238 ATGCTCTTCGCCGAGTGC 60.510 61.111 0.00 0.00 38.05 4.40
362 363 1.153765 TCATGCTCTTCGCCGAGTG 60.154 57.895 0.00 0.00 38.05 3.51
363 364 1.153745 GTCATGCTCTTCGCCGAGT 60.154 57.895 0.00 0.00 38.05 4.18
364 365 1.153765 TGTCATGCTCTTCGCCGAG 60.154 57.895 0.00 0.00 38.05 4.63
365 366 1.446099 GTGTCATGCTCTTCGCCGA 60.446 57.895 0.00 0.00 38.05 5.54
366 367 2.456119 GGTGTCATGCTCTTCGCCG 61.456 63.158 0.00 0.00 38.05 6.46
367 368 2.109126 GGGTGTCATGCTCTTCGCC 61.109 63.158 0.00 0.00 38.05 5.54
368 369 2.456119 CGGGTGTCATGCTCTTCGC 61.456 63.158 0.00 0.00 39.77 4.70
369 370 1.811266 CCGGGTGTCATGCTCTTCG 60.811 63.158 0.00 0.00 0.00 3.79
370 371 2.109126 GCCGGGTGTCATGCTCTTC 61.109 63.158 2.18 0.00 0.00 2.87
371 372 2.045926 GCCGGGTGTCATGCTCTT 60.046 61.111 2.18 0.00 0.00 2.85
372 373 4.457496 CGCCGGGTGTCATGCTCT 62.457 66.667 2.18 0.00 0.00 4.09
373 374 3.365291 TACGCCGGGTGTCATGCTC 62.365 63.158 17.94 0.00 0.00 4.26
374 375 3.387091 TACGCCGGGTGTCATGCT 61.387 61.111 17.94 0.00 0.00 3.79
375 376 3.192922 GTACGCCGGGTGTCATGC 61.193 66.667 17.94 2.81 0.00 4.06
376 377 2.883730 CGTACGCCGGGTGTCATG 60.884 66.667 17.94 4.46 0.00 3.07
377 378 3.346631 GACGTACGCCGGGTGTCAT 62.347 63.158 17.94 3.64 42.24 3.06
378 379 4.041917 GACGTACGCCGGGTGTCA 62.042 66.667 17.94 1.15 42.24 3.58
379 380 3.958822 CTGACGTACGCCGGGTGTC 62.959 68.421 17.94 8.17 42.24 3.67
380 381 4.047059 CTGACGTACGCCGGGTGT 62.047 66.667 18.47 18.47 42.24 4.16
381 382 2.552585 ATTCTGACGTACGCCGGGTG 62.553 60.000 16.72 5.93 42.24 4.61
382 383 1.880819 AATTCTGACGTACGCCGGGT 61.881 55.000 16.72 1.55 42.24 5.28
383 384 1.143969 GAATTCTGACGTACGCCGGG 61.144 60.000 16.72 1.33 42.24 5.73
384 385 1.143969 GGAATTCTGACGTACGCCGG 61.144 60.000 16.72 10.09 42.24 6.13
385 386 0.457166 TGGAATTCTGACGTACGCCG 60.457 55.000 16.72 3.82 44.03 6.46
386 387 1.278238 CTGGAATTCTGACGTACGCC 58.722 55.000 16.72 4.46 0.00 5.68
387 388 1.992170 ACTGGAATTCTGACGTACGC 58.008 50.000 16.72 8.98 0.00 4.42
388 389 4.096311 CACTACTGGAATTCTGACGTACG 58.904 47.826 15.01 15.01 0.00 3.67
389 390 5.306532 TCACTACTGGAATTCTGACGTAC 57.693 43.478 5.23 0.00 0.00 3.67
390 391 5.621555 GCTTCACTACTGGAATTCTGACGTA 60.622 44.000 5.23 1.80 0.00 3.57
391 392 4.810790 CTTCACTACTGGAATTCTGACGT 58.189 43.478 5.23 0.00 0.00 4.34
392 393 3.614616 GCTTCACTACTGGAATTCTGACG 59.385 47.826 5.23 0.00 0.00 4.35
393 394 4.569943 TGCTTCACTACTGGAATTCTGAC 58.430 43.478 5.23 0.00 0.00 3.51
394 395 4.890158 TGCTTCACTACTGGAATTCTGA 57.110 40.909 5.23 0.00 0.00 3.27
395 396 5.181009 TCATGCTTCACTACTGGAATTCTG 58.819 41.667 5.23 1.62 0.00 3.02
396 397 5.426504 CTCATGCTTCACTACTGGAATTCT 58.573 41.667 5.23 0.00 0.00 2.40
397 398 4.034975 GCTCATGCTTCACTACTGGAATTC 59.965 45.833 0.00 0.00 36.03 2.17
398 399 3.944015 GCTCATGCTTCACTACTGGAATT 59.056 43.478 0.00 0.00 36.03 2.17
399 400 3.054875 TGCTCATGCTTCACTACTGGAAT 60.055 43.478 0.00 0.00 40.48 3.01
400 401 2.302733 TGCTCATGCTTCACTACTGGAA 59.697 45.455 0.00 0.00 40.48 3.53
401 402 1.901833 TGCTCATGCTTCACTACTGGA 59.098 47.619 0.00 0.00 40.48 3.86
402 403 2.391616 TGCTCATGCTTCACTACTGG 57.608 50.000 0.00 0.00 40.48 4.00
403 404 3.556365 CAGATGCTCATGCTTCACTACTG 59.444 47.826 6.67 0.00 43.30 2.74
404 405 3.794717 CAGATGCTCATGCTTCACTACT 58.205 45.455 6.67 0.00 43.30 2.57
405 406 2.287373 GCAGATGCTCATGCTTCACTAC 59.713 50.000 0.00 0.00 43.30 2.73
406 407 2.558378 GCAGATGCTCATGCTTCACTA 58.442 47.619 0.00 0.00 43.30 2.74
407 408 1.380524 GCAGATGCTCATGCTTCACT 58.619 50.000 0.00 0.00 43.30 3.41
408 409 3.920144 GCAGATGCTCATGCTTCAC 57.080 52.632 0.00 0.00 43.30 3.18
441 442 4.350346 CACACTCTCAAGCTTCTCTATCG 58.650 47.826 0.00 0.00 0.00 2.92
449 450 1.871408 CGTCTGCACACTCTCAAGCTT 60.871 52.381 0.00 0.00 0.00 3.74
454 455 3.272766 CAACGTCTGCACACTCTCA 57.727 52.632 0.00 0.00 0.00 3.27
471 472 2.755064 CCGATGGGCAACATGGCA 60.755 61.111 6.25 0.00 45.76 4.92
497 512 4.101790 CACCAACGTGGCGCCATC 62.102 66.667 35.23 24.05 42.67 3.51
630 683 5.532664 TGCATGCATGGCTCATTATTTTA 57.467 34.783 27.34 0.00 0.00 1.52
638 691 1.136110 CTCAAATGCATGCATGGCTCA 59.864 47.619 32.79 17.20 36.68 4.26
670 723 0.179073 AAAGGAGCACGATCCATCCG 60.179 55.000 3.85 0.00 42.26 4.18
701 774 3.958147 ATTCTCGTGCTGGGGTGCG 62.958 63.158 0.00 0.00 35.36 5.34
702 775 2.045926 ATTCTCGTGCTGGGGTGC 60.046 61.111 0.00 0.00 0.00 5.01
707 780 1.667724 GAATGTGGATTCTCGTGCTGG 59.332 52.381 0.00 0.00 35.90 4.85
721 794 2.242043 AGGTGCTTCCTTTGGAATGTG 58.758 47.619 0.00 0.00 45.67 3.21
942 1058 1.738099 CGAGCTAAGTTGGCGCTGT 60.738 57.895 7.64 0.00 33.47 4.40
987 1127 5.960811 AGAAGAAGACATCTCCAACTGGATA 59.039 40.000 0.00 0.00 44.46 2.59
1113 1256 2.925170 ACCTTGAGCCAGCGGTCT 60.925 61.111 0.00 0.00 37.40 3.85
1228 1371 2.423803 GGGTGTTGTAGTTGGGGAAAGT 60.424 50.000 0.00 0.00 0.00 2.66
1460 2958 3.264104 CATGCATGACCCCATTTGTTTC 58.736 45.455 22.59 0.00 0.00 2.78
1473 2971 3.699413 TCAATGGGAGAAACATGCATGA 58.301 40.909 32.75 8.34 0.00 3.07
1505 3013 8.292444 TCAAATTTAGAACTGGGATACATTGG 57.708 34.615 0.00 0.00 39.74 3.16
1613 3174 1.349688 ACAGGTAATCCGGTTTGCAGA 59.650 47.619 14.24 0.00 38.95 4.26
1622 3185 7.039644 AGGACTAGATTATCAACAGGTAATCCG 60.040 40.741 0.00 1.21 37.81 4.18
1627 3190 7.272978 GCAAAGGACTAGATTATCAACAGGTA 58.727 38.462 0.00 0.00 0.00 3.08
1650 3215 0.621082 TCAATAACATGGTCCCGGCA 59.379 50.000 0.00 0.00 0.00 5.69
1693 3262 1.238439 AGTGCCCACAATCTTCGTTG 58.762 50.000 0.82 0.00 35.25 4.10
1777 3439 3.791539 CTGCAAGACCTAGCGCAG 58.208 61.111 11.47 4.88 45.17 5.18
1824 3486 8.004801 CCAAAACTTATTGGGGAGGAGTAATAT 58.995 37.037 0.00 0.00 45.03 1.28
1862 3550 8.100791 ACACACAAGTACAGGTATTTACATCAT 58.899 33.333 0.00 0.00 0.00 2.45
1873 3561 4.748277 AACAGTACACACAAGTACAGGT 57.252 40.909 6.97 2.39 45.25 4.00
2030 3739 4.081420 GGAGTACACAAGTCATCAGATGGT 60.081 45.833 10.67 2.14 0.00 3.55
2040 3749 1.254954 ACGGAGGGAGTACACAAGTC 58.745 55.000 0.00 0.00 0.00 3.01
2149 3861 7.809331 TCATGTTTTCACTTCATACAGATTTGC 59.191 33.333 0.00 0.00 0.00 3.68
2213 3951 7.643579 AGCTCGCTCTATGGAAATTTATTTTC 58.356 34.615 0.00 0.00 42.57 2.29
2251 3990 3.826466 CATTCTCTTTTCGTTGGCCTTC 58.174 45.455 3.32 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.