Multiple sequence alignment - TraesCS5B01G277300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G277300 chr5B 100.000 6659 0 0 1 6659 463231531 463224873 0.000000e+00 12297.0
1 TraesCS5B01G277300 chr5A 90.200 2551 177 44 541 3057 487796300 487793789 0.000000e+00 3258.0
2 TraesCS5B01G277300 chr5A 80.146 1098 153 39 4959 6012 487791392 487790316 0.000000e+00 760.0
3 TraesCS5B01G277300 chr5A 93.333 450 25 3 3287 3735 487793646 487793201 0.000000e+00 660.0
4 TraesCS5B01G277300 chr5A 91.746 315 18 2 3728 4035 487793017 487792704 1.330000e-116 431.0
5 TraesCS5B01G277300 chr5A 85.752 379 49 5 151 527 487797791 487797416 4.840000e-106 396.0
6 TraesCS5B01G277300 chr5A 91.192 193 16 1 4176 4368 487792156 487791965 1.840000e-65 261.0
7 TraesCS5B01G277300 chr5A 92.308 169 13 0 4798 4966 487791610 487791442 2.400000e-59 241.0
8 TraesCS5B01G277300 chr5A 77.876 226 28 9 6391 6595 487788213 487787989 3.260000e-23 121.0
9 TraesCS5B01G277300 chr5A 93.617 47 3 0 4106 4152 451462865 451462911 3.330000e-08 71.3
10 TraesCS5B01G277300 chr5D 90.621 2175 152 23 143 2303 385795807 385793671 0.000000e+00 2839.0
11 TraesCS5B01G277300 chr5D 92.770 1646 85 14 3191 4828 385792866 385791247 0.000000e+00 2350.0
12 TraesCS5B01G277300 chr5D 94.350 938 43 4 4813 5745 385791062 385790130 0.000000e+00 1430.0
13 TraesCS5B01G277300 chr5D 94.737 817 40 2 2340 3154 385793675 385792860 0.000000e+00 1267.0
14 TraesCS5B01G277300 chr5D 86.623 613 34 10 5811 6385 385790129 385789527 9.420000e-178 634.0
15 TraesCS5B01G277300 chr5D 90.995 211 11 1 6391 6593 385789100 385788890 1.830000e-70 278.0
16 TraesCS5B01G277300 chr5D 96.970 33 1 0 4115 4147 285552541 285552573 1.000000e-03 56.5
17 TraesCS5B01G277300 chr5D 100.000 28 0 0 4126 4153 557511140 557511167 1.200000e-02 52.8
18 TraesCS5B01G277300 chr7B 95.238 42 2 0 4115 4156 4895421 4895380 4.310000e-07 67.6
19 TraesCS5B01G277300 chr3D 97.368 38 1 0 4115 4152 457021556 457021519 1.550000e-06 65.8
20 TraesCS5B01G277300 chr3D 94.737 38 2 0 4115 4152 520821205 520821168 7.210000e-05 60.2
21 TraesCS5B01G277300 chrUn 94.737 38 2 0 4075 4112 321410970 321411007 7.210000e-05 60.2
22 TraesCS5B01G277300 chrUn 94.737 38 2 0 4075 4112 344640044 344640081 7.210000e-05 60.2
23 TraesCS5B01G277300 chrUn 94.737 38 2 0 4075 4112 344642468 344642505 7.210000e-05 60.2
24 TraesCS5B01G277300 chr3B 92.683 41 3 0 4075 4115 902667 902627 7.210000e-05 60.2
25 TraesCS5B01G277300 chr3B 92.683 41 3 0 4075 4115 918851 918811 7.210000e-05 60.2
26 TraesCS5B01G277300 chr1A 96.875 32 1 0 4115 4146 542002591 542002560 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G277300 chr5B 463224873 463231531 6658 True 12297.000000 12297 100.000000 1 6659 1 chr5B.!!$R1 6658
1 TraesCS5B01G277300 chr5A 487787989 487797791 9802 True 766.000000 3258 87.819125 151 6595 8 chr5A.!!$R1 6444
2 TraesCS5B01G277300 chr5D 385788890 385795807 6917 True 1466.333333 2839 91.682667 143 6593 6 chr5D.!!$R1 6450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 2054 0.108709 TAAGGTGGCGTCGCGTTAAT 60.109 50.000 12.81 0.0 32.84 1.40 F
2325 3469 0.179000 ATGGCTCTAGAAACAGCGGG 59.821 55.000 0.00 0.0 36.41 6.13 F
2790 3937 0.034337 GGCACGTACACTGGAGGAAA 59.966 55.000 0.00 0.0 0.00 3.13 F
4021 5426 0.532640 ACACGCTGTCAGTTGCATGA 60.533 50.000 0.00 0.0 0.00 3.07 F
5061 7344 1.957877 GTCTAAGCCTAGTGGAGCGAT 59.042 52.381 0.00 0.0 34.57 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2771 3918 0.034337 TTTCCTCCAGTGTACGTGCC 59.966 55.0 0.00 0.0 0.00 5.01 R
4181 6116 0.036164 CGGTTGGTCATCACTCCCAA 59.964 55.0 0.00 0.0 35.93 4.12 R
4644 6663 0.523072 CAGCGCAAATAACCACAGCT 59.477 50.0 11.47 0.0 0.00 4.24 R
5448 7764 0.975887 TCCAATGCCCAAAAGAAGCC 59.024 50.0 0.00 0.0 0.00 4.35 R
6631 10731 0.029681 ATCAGGCTATCACCCCTGGT 60.030 55.0 6.82 0.0 46.79 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.160777 CGTACCTCGCTCCATTTTACT 57.839 47.619 0.00 0.00 0.00 2.24
30 31 2.858344 CGTACCTCGCTCCATTTTACTG 59.142 50.000 0.00 0.00 0.00 2.74
31 32 3.675228 CGTACCTCGCTCCATTTTACTGT 60.675 47.826 0.00 0.00 0.00 3.55
32 33 3.418684 ACCTCGCTCCATTTTACTGTT 57.581 42.857 0.00 0.00 0.00 3.16
33 34 3.751518 ACCTCGCTCCATTTTACTGTTT 58.248 40.909 0.00 0.00 0.00 2.83
34 35 3.751698 ACCTCGCTCCATTTTACTGTTTC 59.248 43.478 0.00 0.00 0.00 2.78
35 36 4.003648 CCTCGCTCCATTTTACTGTTTCT 58.996 43.478 0.00 0.00 0.00 2.52
36 37 4.093556 CCTCGCTCCATTTTACTGTTTCTC 59.906 45.833 0.00 0.00 0.00 2.87
37 38 4.637276 TCGCTCCATTTTACTGTTTCTCA 58.363 39.130 0.00 0.00 0.00 3.27
38 39 5.060506 TCGCTCCATTTTACTGTTTCTCAA 58.939 37.500 0.00 0.00 0.00 3.02
39 40 5.705441 TCGCTCCATTTTACTGTTTCTCAAT 59.295 36.000 0.00 0.00 0.00 2.57
40 41 6.876789 TCGCTCCATTTTACTGTTTCTCAATA 59.123 34.615 0.00 0.00 0.00 1.90
41 42 7.064609 TCGCTCCATTTTACTGTTTCTCAATAG 59.935 37.037 0.00 0.00 0.00 1.73
42 43 7.064609 CGCTCCATTTTACTGTTTCTCAATAGA 59.935 37.037 0.00 0.00 0.00 1.98
43 44 8.394121 GCTCCATTTTACTGTTTCTCAATAGAG 58.606 37.037 0.00 0.00 43.48 2.43
65 66 7.901029 AGAGAAACAGTTAGATCTCAATCACA 58.099 34.615 13.63 0.00 40.57 3.58
66 67 8.370940 AGAGAAACAGTTAGATCTCAATCACAA 58.629 33.333 13.63 0.00 40.57 3.33
67 68 9.160496 GAGAAACAGTTAGATCTCAATCACAAT 57.840 33.333 0.00 0.00 38.51 2.71
120 121 5.973651 AATTCTATATGTGTGTGCTCACG 57.026 39.130 13.76 0.00 46.49 4.35
121 122 4.712122 TTCTATATGTGTGTGCTCACGA 57.288 40.909 13.76 3.91 46.49 4.35
122 123 4.918810 TCTATATGTGTGTGCTCACGAT 57.081 40.909 13.76 10.53 46.49 3.73
123 124 5.262588 TCTATATGTGTGTGCTCACGATT 57.737 39.130 13.76 3.94 46.49 3.34
124 125 5.043248 TCTATATGTGTGTGCTCACGATTG 58.957 41.667 13.76 6.32 46.49 2.67
125 126 2.168326 ATGTGTGTGCTCACGATTGA 57.832 45.000 13.76 0.00 46.49 2.57
126 127 2.168326 TGTGTGTGCTCACGATTGAT 57.832 45.000 13.76 0.00 46.49 2.57
127 128 1.799994 TGTGTGTGCTCACGATTGATG 59.200 47.619 13.76 0.00 46.49 3.07
128 129 1.129251 GTGTGTGCTCACGATTGATGG 59.871 52.381 13.76 0.00 46.49 3.51
129 130 1.270785 TGTGTGCTCACGATTGATGGT 60.271 47.619 13.76 0.00 46.49 3.55
130 131 1.129251 GTGTGCTCACGATTGATGGTG 59.871 52.381 2.72 0.30 37.78 4.17
131 132 1.270785 TGTGCTCACGATTGATGGTGT 60.271 47.619 6.12 0.00 37.69 4.16
132 133 1.129251 GTGCTCACGATTGATGGTGTG 59.871 52.381 6.12 5.27 37.69 3.82
133 134 0.729116 GCTCACGATTGATGGTGTGG 59.271 55.000 6.12 3.07 37.69 4.17
134 135 1.945819 GCTCACGATTGATGGTGTGGT 60.946 52.381 6.12 0.00 37.69 4.16
135 136 2.426522 CTCACGATTGATGGTGTGGTT 58.573 47.619 6.12 0.00 37.69 3.67
136 137 3.595173 CTCACGATTGATGGTGTGGTTA 58.405 45.455 6.12 0.00 37.69 2.85
137 138 3.595173 TCACGATTGATGGTGTGGTTAG 58.405 45.455 6.12 0.00 37.69 2.34
138 139 2.677836 CACGATTGATGGTGTGGTTAGG 59.322 50.000 0.00 0.00 32.71 2.69
139 140 2.304761 ACGATTGATGGTGTGGTTAGGT 59.695 45.455 0.00 0.00 0.00 3.08
140 141 3.516300 ACGATTGATGGTGTGGTTAGGTA 59.484 43.478 0.00 0.00 0.00 3.08
141 142 4.119862 CGATTGATGGTGTGGTTAGGTAG 58.880 47.826 0.00 0.00 0.00 3.18
183 184 2.062636 GGGGATATGGTAAAGGGCAGA 58.937 52.381 0.00 0.00 0.00 4.26
236 237 5.892348 ACCCTTGATTTGATGTTTAGGAGT 58.108 37.500 0.00 0.00 0.00 3.85
268 269 5.604231 ACTCTCTGTGCCTTATTATGATGGA 59.396 40.000 0.00 0.00 0.00 3.41
319 320 8.491950 CGTAAAAAGGTCAATAAATTTTGGTGG 58.508 33.333 0.00 0.00 0.00 4.61
321 322 6.508030 AAAGGTCAATAAATTTTGGTGGGT 57.492 33.333 0.00 0.00 0.00 4.51
336 337 2.355818 GGTGGGTGAGATAAAGGTGGTC 60.356 54.545 0.00 0.00 0.00 4.02
343 344 5.305585 GTGAGATAAAGGTGGTCAGACAAA 58.694 41.667 2.17 0.00 0.00 2.83
418 419 4.827692 ACTCGTGTTAGGTGAATGCATTA 58.172 39.130 12.97 0.00 0.00 1.90
421 422 5.933790 TCGTGTTAGGTGAATGCATTAAAC 58.066 37.500 12.97 8.03 0.00 2.01
426 427 8.028938 GTGTTAGGTGAATGCATTAAACAATCT 58.971 33.333 14.49 10.49 0.00 2.40
619 1729 1.376553 GTGCCCTCTGCTCTGGTTC 60.377 63.158 0.00 0.00 42.00 3.62
696 1806 4.728110 TCGACTCCCCTCGGCGAA 62.728 66.667 12.13 0.00 34.27 4.70
736 1846 2.125912 CAGGTCGAAGCGAGGGTG 60.126 66.667 0.00 0.00 36.23 4.61
767 1877 1.930908 GACGTCGACGGACCAATCCT 61.931 60.000 37.89 16.78 43.73 3.24
769 1879 1.076533 CGTCGACGGACCAATCCTTG 61.077 60.000 29.70 0.00 43.73 3.61
775 1885 0.740737 CGGACCAATCCTTGCATTCC 59.259 55.000 0.00 0.00 43.73 3.01
776 1886 0.740737 GGACCAATCCTTGCATTCCG 59.259 55.000 0.00 0.00 42.45 4.30
780 1890 2.026262 ACCAATCCTTGCATTCCGTAGT 60.026 45.455 0.00 0.00 0.00 2.73
781 1891 3.199071 ACCAATCCTTGCATTCCGTAGTA 59.801 43.478 0.00 0.00 0.00 1.82
811 1921 3.026879 CGCGTCTCCTATGCTGCG 61.027 66.667 0.00 0.00 38.02 5.18
847 1957 1.490574 CACTTCTTCTCCCGATCCCT 58.509 55.000 0.00 0.00 0.00 4.20
854 1964 3.116707 TCTTCTCCCGATCCCTAAATCCT 60.117 47.826 0.00 0.00 0.00 3.24
920 2030 4.465446 CCAGCGGAGGAGGAGGGA 62.465 72.222 0.00 0.00 0.00 4.20
930 2040 1.876473 AGGAGGAGGGATCCATAAGGT 59.124 52.381 15.23 0.00 39.47 3.50
940 2050 2.508439 CATAAGGTGGCGTCGCGT 60.508 61.111 11.75 0.00 0.00 6.01
944 2054 0.108709 TAAGGTGGCGTCGCGTTAAT 60.109 50.000 12.81 0.00 32.84 1.40
945 2055 0.952010 AAGGTGGCGTCGCGTTAATT 60.952 50.000 11.75 0.00 30.86 1.40
946 2056 0.108709 AGGTGGCGTCGCGTTAATTA 60.109 50.000 11.75 0.00 0.00 1.40
952 2062 1.538276 CGTCGCGTTAATTAGTCCGT 58.462 50.000 5.77 0.00 0.00 4.69
1129 2239 3.379445 CCAGTACGTGTCCCCGCT 61.379 66.667 0.00 0.00 0.00 5.52
1130 2240 2.181021 CAGTACGTGTCCCCGCTC 59.819 66.667 0.00 0.00 0.00 5.03
1145 2255 3.141488 CTCCCGTCTCTCCCCGTG 61.141 72.222 0.00 0.00 0.00 4.94
1152 2262 3.775654 CTCTCCCCGTGCACTCCC 61.776 72.222 16.19 0.00 0.00 4.30
1165 2279 2.509336 CTCCCGTCGTCCATGTGC 60.509 66.667 0.00 0.00 0.00 4.57
1225 2339 8.496534 TCCTCTATGAAAATGATCCTGATGTA 57.503 34.615 0.00 0.00 0.00 2.29
1254 2368 1.926510 TCTGCTTCGTGATGCATTACG 59.073 47.619 31.48 31.48 40.09 3.18
1355 2469 3.840666 TGTTAGGCCTGTGAGAATCTCTT 59.159 43.478 17.99 0.00 34.92 2.85
1368 2482 8.037758 TGTGAGAATCTCTTAGTTCTCCAATTC 58.962 37.037 11.92 0.00 46.13 2.17
1433 2548 3.893813 GGCCTTCATTCTGAGCCAATATT 59.106 43.478 0.00 0.00 37.57 1.28
1434 2549 4.022503 GGCCTTCATTCTGAGCCAATATTC 60.023 45.833 0.00 0.00 37.57 1.75
1458 2573 3.369471 CGGATTTGTCAGTGGGTAGACAT 60.369 47.826 0.00 0.00 43.57 3.06
1554 2669 2.557676 CCAGAGGTAAGGAGTGAGACCA 60.558 54.545 0.00 0.00 34.18 4.02
1626 2745 5.086104 CTTACTTAGTAAGGGAAGCAGCA 57.914 43.478 20.94 0.00 41.02 4.41
1641 2760 1.734707 GCAGCAGTGTTCATTGCATCC 60.735 52.381 19.17 6.22 42.67 3.51
1666 2785 6.032880 CGATACTGATGTGATGTATTGCTACG 59.967 42.308 0.00 0.00 0.00 3.51
1696 2815 2.356125 GGAATTAGCTGAACTGGAGGCA 60.356 50.000 0.00 0.00 0.00 4.75
1801 2920 2.746472 GCTTCACTCGCTCCCCATTATT 60.746 50.000 0.00 0.00 0.00 1.40
1811 2930 4.037923 CGCTCCCCATTATTTGTATTGCTT 59.962 41.667 0.00 0.00 0.00 3.91
1812 2931 5.240623 CGCTCCCCATTATTTGTATTGCTTA 59.759 40.000 0.00 0.00 0.00 3.09
2043 3182 8.121305 TCATGAGTAATGCCTATTGTTTGTTT 57.879 30.769 0.00 0.00 36.11 2.83
2055 3194 2.796557 TGTTTGTTTGGGTCACACTCA 58.203 42.857 0.00 0.00 0.00 3.41
2088 3227 8.038351 TGCATTAGCTATTGTTGTTGTAGTCTA 58.962 33.333 15.18 0.00 42.74 2.59
2109 3250 7.849322 TCTACCTTATGGTTGACTATATGCA 57.151 36.000 5.49 0.00 46.05 3.96
2139 3280 7.851387 TGCTAATTCGGTATTTCACATTACA 57.149 32.000 0.00 0.00 0.00 2.41
2183 3324 3.455177 AGAATGATGCTCATGGTCAGAGT 59.545 43.478 0.00 0.00 37.15 3.24
2242 3383 4.041075 TGTGACTGCTAAATGGGAACTGTA 59.959 41.667 0.00 0.00 0.00 2.74
2325 3469 0.179000 ATGGCTCTAGAAACAGCGGG 59.821 55.000 0.00 0.00 36.41 6.13
2386 3530 1.269448 CGGCTTTTGCTAACACATGGT 59.731 47.619 0.00 0.00 46.54 3.55
2394 3538 2.158682 TGCTAACACATGGTCACAACCT 60.159 45.455 0.00 0.00 46.60 3.50
2409 3553 2.496470 ACAACCTTTAGCCTCTCTACGG 59.504 50.000 0.00 0.00 0.00 4.02
2416 3560 1.227380 GCCTCTCTACGGCACCATG 60.227 63.158 0.00 0.00 46.77 3.66
2470 3614 7.017254 ACCTAACTTTTAGGTCTTCAATCAGGA 59.983 37.037 11.21 0.00 44.10 3.86
2473 3617 7.751768 ACTTTTAGGTCTTCAATCAGGAAAG 57.248 36.000 0.00 0.00 0.00 2.62
2481 3625 7.882271 AGGTCTTCAATCAGGAAAGCATATATC 59.118 37.037 0.00 0.00 0.00 1.63
2485 3629 8.484641 TTCAATCAGGAAAGCATATATCGATC 57.515 34.615 0.00 0.00 0.00 3.69
2607 3753 2.026590 GCGCACAGCTTTGCAAGT 59.973 55.556 23.68 0.00 43.15 3.16
2732 3879 0.252197 GCCCTCCGTCCACATTTACT 59.748 55.000 0.00 0.00 0.00 2.24
2735 3882 2.747446 CCCTCCGTCCACATTTACTTTG 59.253 50.000 0.00 0.00 0.00 2.77
2771 3918 2.806019 CGGAGGAAGCCATCTCTCAATG 60.806 54.545 0.00 0.00 30.98 2.82
2790 3937 0.034337 GGCACGTACACTGGAGGAAA 59.966 55.000 0.00 0.00 0.00 3.13
2846 3993 0.752658 GGGCACAAACTCTTTTGGCT 59.247 50.000 2.42 0.00 45.65 4.75
2879 4026 1.679139 TTTGCACAGGTTCACCTCTG 58.321 50.000 0.00 0.00 46.65 3.35
2955 4102 5.510430 AGAGGTCATCCTTTGATAAAACCC 58.490 41.667 0.00 0.00 45.24 4.11
2998 4145 2.046864 TCAGGTCTCGGCCTTCTCG 61.047 63.158 0.00 0.00 36.58 4.04
3037 4184 1.483827 TGGCCATTTCTTGTTGCACAA 59.516 42.857 0.00 0.00 36.54 3.33
3078 4225 2.012673 CTTCCCTCACATAACAGCAGC 58.987 52.381 0.00 0.00 0.00 5.25
3087 4234 2.170166 CATAACAGCAGCCCCAAAAGA 58.830 47.619 0.00 0.00 0.00 2.52
3095 4242 2.094545 GCAGCCCCAAAAGAAGTGTATG 60.095 50.000 0.00 0.00 0.00 2.39
3154 4345 6.328672 ACATTGAGCTTGATATTCCTCCTAGT 59.671 38.462 0.00 0.00 0.00 2.57
3155 4346 6.412362 TTGAGCTTGATATTCCTCCTAGTC 57.588 41.667 0.00 0.00 0.00 2.59
3156 4347 4.835615 TGAGCTTGATATTCCTCCTAGTCC 59.164 45.833 0.00 0.00 0.00 3.85
3157 4348 3.829601 AGCTTGATATTCCTCCTAGTCCG 59.170 47.826 0.00 0.00 0.00 4.79
3158 4349 3.056465 GCTTGATATTCCTCCTAGTCCGG 60.056 52.174 0.00 0.00 0.00 5.14
3159 4350 4.408276 CTTGATATTCCTCCTAGTCCGGA 58.592 47.826 0.00 0.00 0.00 5.14
3165 4356 2.045280 CTCCTAGTCCGGAGCATGG 58.955 63.158 3.06 5.29 43.69 3.66
3166 4357 2.093537 CTCCTAGTCCGGAGCATGGC 62.094 65.000 3.06 0.00 43.69 4.40
3167 4358 2.136878 CCTAGTCCGGAGCATGGCT 61.137 63.158 3.06 0.00 43.88 4.75
3168 4359 1.068753 CTAGTCCGGAGCATGGCTG 59.931 63.158 3.06 0.00 39.88 4.85
3169 4360 1.680522 CTAGTCCGGAGCATGGCTGT 61.681 60.000 3.06 0.00 39.88 4.40
3170 4361 1.676678 TAGTCCGGAGCATGGCTGTC 61.677 60.000 3.06 0.00 39.88 3.51
3171 4362 4.147449 TCCGGAGCATGGCTGTCG 62.147 66.667 0.00 0.00 39.88 4.35
3173 4364 4.147449 CGGAGCATGGCTGTCGGA 62.147 66.667 0.00 0.00 39.88 4.55
3174 4365 2.202987 GGAGCATGGCTGTCGGAG 60.203 66.667 0.00 0.00 39.88 4.63
3193 4384 3.688553 CCGAATTGGCTAGGACTCC 57.311 57.895 0.00 0.00 0.00 3.85
3194 4385 1.123928 CCGAATTGGCTAGGACTCCT 58.876 55.000 2.31 2.31 37.71 3.69
3195 4386 2.317040 CCGAATTGGCTAGGACTCCTA 58.683 52.381 4.65 4.65 34.61 2.94
3260 4452 5.461078 GCATGCATGGATCTTCATTTTACAC 59.539 40.000 27.34 1.22 0.00 2.90
3293 4485 3.718956 AGCTCCATAACTTAAGCCATCCT 59.281 43.478 1.29 0.00 35.32 3.24
3509 4702 6.012333 TGGGGCCAAGAGTCTATTAAAACTTA 60.012 38.462 4.39 0.00 0.00 2.24
3623 4816 9.467258 CAGTTTCTTCAATGTTACATTGATTGT 57.533 29.630 32.59 16.50 42.62 2.71
3624 4817 9.467258 AGTTTCTTCAATGTTACATTGATTGTG 57.533 29.630 32.59 23.54 39.48 3.33
3753 5135 5.425217 TCCTCCTCAAGTACAAGATATTGCA 59.575 40.000 0.00 0.00 0.00 4.08
3879 5268 3.844211 ACACTCCTACCACACCATACAAT 59.156 43.478 0.00 0.00 0.00 2.71
3888 5277 5.324409 ACCACACCATACAATCAGTTCATT 58.676 37.500 0.00 0.00 0.00 2.57
3897 5302 9.520204 CCATACAATCAGTTCATTTTCAATACC 57.480 33.333 0.00 0.00 0.00 2.73
3901 5306 7.599998 ACAATCAGTTCATTTTCAATACCTTGC 59.400 33.333 0.00 0.00 32.11 4.01
3902 5307 6.899393 TCAGTTCATTTTCAATACCTTGCT 57.101 33.333 0.00 0.00 32.11 3.91
3903 5308 7.288810 TCAGTTCATTTTCAATACCTTGCTT 57.711 32.000 0.00 0.00 32.11 3.91
3904 5309 7.147312 TCAGTTCATTTTCAATACCTTGCTTG 58.853 34.615 0.00 0.00 32.11 4.01
3905 5310 7.014134 TCAGTTCATTTTCAATACCTTGCTTGA 59.986 33.333 0.00 0.00 32.11 3.02
3906 5311 7.652909 CAGTTCATTTTCAATACCTTGCTTGAA 59.347 33.333 0.00 0.00 39.06 2.69
3907 5312 8.203485 AGTTCATTTTCAATACCTTGCTTGAAA 58.797 29.630 5.47 5.47 45.01 2.69
3908 5313 8.490355 GTTCATTTTCAATACCTTGCTTGAAAG 58.510 33.333 8.66 1.44 46.32 2.62
3909 5314 7.950512 TCATTTTCAATACCTTGCTTGAAAGA 58.049 30.769 8.66 3.28 46.32 2.52
3910 5315 7.867403 TCATTTTCAATACCTTGCTTGAAAGAC 59.133 33.333 8.66 0.00 46.32 3.01
3911 5316 6.959639 TTTCAATACCTTGCTTGAAAGACT 57.040 33.333 5.47 0.00 43.04 3.24
3912 5317 6.560253 TTCAATACCTTGCTTGAAAGACTC 57.440 37.500 0.00 0.00 38.17 3.36
3920 5325 1.803555 GCTTGAAAGACTCACTCCAGC 59.196 52.381 0.00 0.00 32.21 4.85
3935 5340 2.037136 CAGCTCTCCAACCCAAGCG 61.037 63.158 0.00 0.00 39.72 4.68
3984 5389 2.420129 CGTCTTCCTTATCCCCACCTTG 60.420 54.545 0.00 0.00 0.00 3.61
4021 5426 0.532640 ACACGCTGTCAGTTGCATGA 60.533 50.000 0.00 0.00 0.00 3.07
4078 5992 8.751215 ATTCACCCAGTTATATATTACCTCCA 57.249 34.615 0.00 0.00 0.00 3.86
4085 5999 8.611257 CCAGTTATATATTACCTCCATCCCAAA 58.389 37.037 0.00 0.00 0.00 3.28
4102 6016 7.171678 CCATCCCAAATTACTCGTCTTAGATTC 59.828 40.741 0.00 0.00 0.00 2.52
4116 6030 6.399880 CGTCTTAGATTCGTCTAGATACGGAC 60.400 46.154 0.00 0.00 43.05 4.79
4117 6031 6.423302 GTCTTAGATTCGTCTAGATACGGACA 59.577 42.308 0.00 0.00 43.05 4.02
4118 6032 6.988580 TCTTAGATTCGTCTAGATACGGACAA 59.011 38.462 0.00 0.00 43.05 3.18
4122 6036 6.487331 AGATTCGTCTAGATACGGACAAATCT 59.513 38.462 0.00 4.58 43.05 2.40
4125 6039 7.187244 TCGTCTAGATACGGACAAATCTAAG 57.813 40.000 0.00 0.00 43.05 2.18
4128 6042 7.254692 CGTCTAGATACGGACAAATCTAAGACA 60.255 40.741 0.00 0.00 39.19 3.41
4140 6075 6.598064 ACAAATCTAAGACAAGTAATTCGGGG 59.402 38.462 0.00 0.00 0.00 5.73
4142 6077 2.871096 AAGACAAGTAATTCGGGGCA 57.129 45.000 0.00 0.00 0.00 5.36
4169 6104 5.305585 GGAGTAGAAAACATGTTGGAGTGA 58.694 41.667 12.82 0.00 0.00 3.41
4170 6105 5.940470 GGAGTAGAAAACATGTTGGAGTGAT 59.060 40.000 12.82 0.00 0.00 3.06
4171 6106 6.128172 GGAGTAGAAAACATGTTGGAGTGATG 60.128 42.308 12.82 0.00 0.00 3.07
4172 6107 6.533730 AGTAGAAAACATGTTGGAGTGATGA 58.466 36.000 12.82 0.00 0.00 2.92
4173 6108 5.695851 AGAAAACATGTTGGAGTGATGAC 57.304 39.130 12.82 0.00 0.00 3.06
4174 6109 4.520492 AGAAAACATGTTGGAGTGATGACC 59.480 41.667 12.82 0.00 0.00 4.02
4175 6110 3.507162 AACATGTTGGAGTGATGACCA 57.493 42.857 11.07 0.00 0.00 4.02
4176 6111 3.507162 ACATGTTGGAGTGATGACCAA 57.493 42.857 0.00 0.00 42.78 3.67
4181 6116 3.507162 TTGGAGTGATGACCAACATGT 57.493 42.857 0.00 0.00 40.59 3.21
4182 6117 3.507162 TGGAGTGATGACCAACATGTT 57.493 42.857 4.92 4.92 39.56 2.71
4183 6118 3.148412 TGGAGTGATGACCAACATGTTG 58.852 45.455 28.18 28.18 39.56 3.33
4231 6166 9.827411 GTAATCTGACTTCCTGTTTGTATTTTC 57.173 33.333 0.00 0.00 0.00 2.29
4415 6434 4.437930 GCTTCATGTATTTGCTCCACTGAC 60.438 45.833 0.00 0.00 0.00 3.51
4425 6444 7.886629 ATTTGCTCCACTGACACATATTTAT 57.113 32.000 0.00 0.00 0.00 1.40
4540 6559 9.941325 TGTTACTCCGTAGTTTCCATTATTTTA 57.059 29.630 0.00 0.00 37.15 1.52
4570 6589 7.743116 TCAGTTGTATATCCCTTTGGAGTTA 57.257 36.000 0.00 0.00 46.08 2.24
4641 6660 3.374042 TCCACCAAAACCTTTCAGACA 57.626 42.857 0.00 0.00 0.00 3.41
4644 6663 5.450453 TCCACCAAAACCTTTCAGACATAA 58.550 37.500 0.00 0.00 0.00 1.90
4659 6678 5.123820 TCAGACATAAGCTGTGGTTATTTGC 59.876 40.000 4.59 0.00 38.54 3.68
4722 6741 4.680975 GCTGGGAAACTAGTACCTGATGTC 60.681 50.000 16.90 4.13 41.77 3.06
4733 6752 6.420913 AGTACCTGATGTCTTGTTACTGTT 57.579 37.500 0.00 0.00 0.00 3.16
4931 7157 5.871396 TCCCTGGTACATCTGAAGATAAC 57.129 43.478 0.00 0.00 38.20 1.89
4948 7174 9.667107 TGAAGATAACAAGAAAGGTAACATAGG 57.333 33.333 0.00 0.00 41.41 2.57
4967 7250 6.876257 ACATAGGCTTATTTGCTAGTATCTGC 59.124 38.462 0.00 0.00 0.00 4.26
4980 7263 8.353423 TGCTAGTATCTGCTATGATTGTGATA 57.647 34.615 0.00 0.00 0.00 2.15
5001 7284 7.172190 GTGATATAGTGCAGCTCAAATATGTGT 59.828 37.037 0.00 0.00 0.00 3.72
5038 7321 3.617531 CGCACTGTTTAGGACCTGAGAAT 60.618 47.826 3.53 0.00 0.00 2.40
5061 7344 1.957877 GTCTAAGCCTAGTGGAGCGAT 59.042 52.381 0.00 0.00 34.57 4.58
5195 7479 4.956075 TGAGTCTATAATGCCAGTCACTGA 59.044 41.667 6.30 0.00 32.44 3.41
5225 7509 5.664294 ATGCTATTGTGCCATTTCTTCAA 57.336 34.783 0.00 0.00 0.00 2.69
5245 7535 4.892934 TCAAAGACCTGCCTTTTGTTGTAT 59.107 37.500 0.00 0.00 34.41 2.29
5246 7536 5.362430 TCAAAGACCTGCCTTTTGTTGTATT 59.638 36.000 0.00 0.00 34.41 1.89
5247 7537 4.853924 AGACCTGCCTTTTGTTGTATTG 57.146 40.909 0.00 0.00 0.00 1.90
5248 7538 4.215109 AGACCTGCCTTTTGTTGTATTGT 58.785 39.130 0.00 0.00 0.00 2.71
5366 7675 3.063180 GGAGTGCGACATTCTGAGAATTG 59.937 47.826 4.67 4.26 0.00 2.32
5419 7735 3.071602 TCTTAGTGAGCCCAGCAATATCC 59.928 47.826 0.00 0.00 0.00 2.59
5441 7757 2.364002 TCTGGGCTTTTAAGTGCAAACC 59.636 45.455 0.00 0.00 0.00 3.27
5448 7764 1.540267 TTAAGTGCAAACCATCCCCG 58.460 50.000 0.00 0.00 0.00 5.73
5512 7832 7.919091 CCGTTCATACAACAAGTCTAGCTAATA 59.081 37.037 0.00 0.00 0.00 0.98
5674 7998 7.394077 CACCATCATGAATGCCAACCTATAATA 59.606 37.037 0.00 0.00 33.71 0.98
5681 8005 3.476552 TGCCAACCTATAATAGCAGCAC 58.523 45.455 0.00 0.00 0.00 4.40
5683 8007 4.074970 GCCAACCTATAATAGCAGCACAT 58.925 43.478 0.00 0.00 0.00 3.21
5733 8058 1.373570 GCCTACCTGCTGACAACATC 58.626 55.000 0.00 0.00 0.00 3.06
5748 8073 5.106038 TGACAACATCTTTGCTGATGGATTC 60.106 40.000 15.45 10.12 45.78 2.52
5752 8077 5.507637 ACATCTTTGCTGATGGATTCTTCT 58.492 37.500 15.45 0.00 45.78 2.85
5756 8081 6.118170 TCTTTGCTGATGGATTCTTCTAAGG 58.882 40.000 0.00 0.00 0.00 2.69
5757 8082 3.813443 TGCTGATGGATTCTTCTAAGGC 58.187 45.455 0.00 0.00 0.00 4.35
5762 8087 5.555017 TGATGGATTCTTCTAAGGCTATGC 58.445 41.667 0.00 0.00 0.00 3.14
5763 8088 5.309020 TGATGGATTCTTCTAAGGCTATGCT 59.691 40.000 0.00 0.00 0.00 3.79
5764 8089 5.220710 TGGATTCTTCTAAGGCTATGCTC 57.779 43.478 0.00 0.00 0.00 4.26
5765 8090 4.904251 TGGATTCTTCTAAGGCTATGCTCT 59.096 41.667 0.00 0.00 0.00 4.09
5770 8095 4.586841 TCTTCTAAGGCTATGCTCTCCTTC 59.413 45.833 0.00 0.00 40.42 3.46
5782 8107 4.410099 TGCTCTCCTTCACCATTTTGATT 58.590 39.130 0.00 0.00 0.00 2.57
5787 8112 6.070656 TCTCCTTCACCATTTTGATTCAAGT 58.929 36.000 0.00 0.00 0.00 3.16
5794 8119 6.723515 TCACCATTTTGATTCAAGTAATGGGA 59.276 34.615 29.37 23.59 41.90 4.37
5802 8127 7.903995 TGATTCAAGTAATGGGAAATTTTGC 57.096 32.000 0.00 0.00 0.00 3.68
5805 8130 7.670009 TTCAAGTAATGGGAAATTTTGCATG 57.330 32.000 2.98 0.00 0.00 4.06
5807 8132 6.873076 TCAAGTAATGGGAAATTTTGCATGTC 59.127 34.615 2.98 0.00 0.00 3.06
5824 8149 2.150390 TGTCGTGCAACAATGTATGCT 58.850 42.857 16.82 0.00 42.97 3.79
5831 8156 4.148696 GTGCAACAATGTATGCTTGTCAAC 59.851 41.667 16.82 6.47 42.97 3.18
5832 8157 3.674753 GCAACAATGTATGCTTGTCAACC 59.325 43.478 11.38 0.00 39.46 3.77
5889 8214 2.644798 ACATAGGCACCCTCTCTTTTGT 59.355 45.455 0.00 0.00 34.61 2.83
5983 8315 9.847224 TTATGAAGTTTAGAGGTCTGTTTTTCT 57.153 29.630 0.00 0.00 0.00 2.52
5997 8329 6.140737 GTCTGTTTTTCTTTTGCACGATGTAG 59.859 38.462 0.00 0.00 0.00 2.74
6018 8350 4.248058 AGCAGCTGAAATTGGTTTATTGC 58.752 39.130 20.43 0.00 0.00 3.56
6069 8408 2.032178 CACAGGCTCCTTTTTATAGCGC 59.968 50.000 0.00 0.00 37.11 5.92
6071 8410 2.289002 CAGGCTCCTTTTTATAGCGCTG 59.711 50.000 22.90 0.00 37.11 5.18
6072 8411 1.002359 GGCTCCTTTTTATAGCGCTGC 60.002 52.381 22.90 10.54 37.11 5.25
6114 8989 7.878547 TGATTGAAAACTGGTCATATGCATA 57.121 32.000 9.27 9.27 0.00 3.14
6116 8991 8.747471 TGATTGAAAACTGGTCATATGCATAAA 58.253 29.630 11.13 0.00 0.00 1.40
6122 8997 4.686091 ACTGGTCATATGCATAAACGATCG 59.314 41.667 14.88 14.88 0.00 3.69
6125 9000 6.394809 TGGTCATATGCATAAACGATCGTAT 58.605 36.000 23.04 12.53 0.00 3.06
6133 9008 8.842942 ATGCATAAACGATCGTATATAGTGAG 57.157 34.615 23.04 6.09 0.00 3.51
6274 9823 7.234371 CACTTTCAGATCAGGATCCCTATCTAA 59.766 40.741 20.65 13.90 38.58 2.10
6275 9824 7.960861 ACTTTCAGATCAGGATCCCTATCTAAT 59.039 37.037 20.65 7.17 38.58 1.73
6276 9825 7.730672 TTCAGATCAGGATCCCTATCTAATG 57.269 40.000 20.65 12.84 38.58 1.90
6277 9826 6.809428 TCAGATCAGGATCCCTATCTAATGT 58.191 40.000 20.65 2.63 38.58 2.71
6327 9878 1.977544 CCTCGTGAGTCCCCGAAGT 60.978 63.158 3.94 0.00 31.92 3.01
6344 9895 0.976641 AGTCTGGAACCGATGCTGAA 59.023 50.000 0.00 0.00 0.00 3.02
6385 9936 6.625362 TCTTCTGCAGTTAGAACAGATGTAG 58.375 40.000 14.67 0.00 39.99 2.74
6387 9938 4.772624 TCTGCAGTTAGAACAGATGTAGGT 59.227 41.667 14.67 0.00 35.58 3.08
6388 9939 4.820897 TGCAGTTAGAACAGATGTAGGTG 58.179 43.478 0.00 0.00 0.00 4.00
6389 9940 4.526650 TGCAGTTAGAACAGATGTAGGTGA 59.473 41.667 0.00 0.00 0.00 4.02
6395 10474 3.261897 AGAACAGATGTAGGTGAAGGTGG 59.738 47.826 0.00 0.00 0.00 4.61
6475 10554 4.758674 AGATCATATCATGGGTTTTGCGAG 59.241 41.667 0.00 0.00 0.00 5.03
6491 10570 1.005557 GCGAGCATTTACTTCTGAGCG 60.006 52.381 0.00 0.00 0.00 5.03
6505 10597 0.242555 TGAGCGCACAGTCGATGTTA 59.757 50.000 11.47 0.00 41.41 2.41
6513 10605 3.122948 GCACAGTCGATGTTAATGACGTT 59.877 43.478 0.00 0.00 41.41 3.99
6577 10677 5.928602 CCATCTTGGTGCTTGGATACACAC 61.929 50.000 0.00 0.00 41.51 3.82
6595 10695 5.446709 ACACACGCGTACACATATAGATAC 58.553 41.667 13.44 0.00 0.00 2.24
6596 10696 5.007921 ACACACGCGTACACATATAGATACA 59.992 40.000 13.44 0.00 0.00 2.29
6597 10697 5.564127 CACACGCGTACACATATAGATACAG 59.436 44.000 13.44 0.00 0.00 2.74
6598 10698 5.237996 ACACGCGTACACATATAGATACAGT 59.762 40.000 13.44 0.00 0.00 3.55
6599 10699 6.424812 ACACGCGTACACATATAGATACAGTA 59.575 38.462 13.44 0.00 0.00 2.74
6600 10700 6.735510 CACGCGTACACATATAGATACAGTAC 59.264 42.308 13.44 0.00 0.00 2.73
6601 10701 6.424812 ACGCGTACACATATAGATACAGTACA 59.575 38.462 11.67 0.00 32.20 2.90
6602 10702 7.041848 ACGCGTACACATATAGATACAGTACAA 60.042 37.037 11.67 0.00 32.20 2.41
6603 10703 7.799914 CGCGTACACATATAGATACAGTACAAA 59.200 37.037 0.00 0.00 32.20 2.83
6604 10704 9.454585 GCGTACACATATAGATACAGTACAAAA 57.545 33.333 0.00 0.00 32.20 2.44
6613 10713 6.727824 AGATACAGTACAAAAGATGCACAC 57.272 37.500 0.00 0.00 0.00 3.82
6614 10714 5.643777 AGATACAGTACAAAAGATGCACACC 59.356 40.000 0.00 0.00 0.00 4.16
6615 10715 3.550820 ACAGTACAAAAGATGCACACCA 58.449 40.909 0.00 0.00 0.00 4.17
6616 10716 4.144297 ACAGTACAAAAGATGCACACCAT 58.856 39.130 0.00 0.00 36.70 3.55
6617 10717 5.312895 ACAGTACAAAAGATGCACACCATA 58.687 37.500 0.00 0.00 33.29 2.74
6618 10718 5.181245 ACAGTACAAAAGATGCACACCATAC 59.819 40.000 0.00 0.00 33.29 2.39
6619 10719 5.181056 CAGTACAAAAGATGCACACCATACA 59.819 40.000 0.00 0.00 33.29 2.29
6620 10720 5.945784 AGTACAAAAGATGCACACCATACAT 59.054 36.000 0.00 0.00 33.29 2.29
6621 10721 5.314923 ACAAAAGATGCACACCATACATC 57.685 39.130 0.00 0.00 40.40 3.06
6625 10725 4.767578 AGATGCACACCATACATCTCTT 57.232 40.909 0.00 0.00 45.68 2.85
6626 10726 5.108187 AGATGCACACCATACATCTCTTT 57.892 39.130 0.00 0.00 45.68 2.52
6627 10727 5.121811 AGATGCACACCATACATCTCTTTC 58.878 41.667 0.00 0.00 45.68 2.62
6628 10728 4.284829 TGCACACCATACATCTCTTTCA 57.715 40.909 0.00 0.00 0.00 2.69
6629 10729 4.847198 TGCACACCATACATCTCTTTCAT 58.153 39.130 0.00 0.00 0.00 2.57
6630 10730 4.877823 TGCACACCATACATCTCTTTCATC 59.122 41.667 0.00 0.00 0.00 2.92
6631 10731 4.877823 GCACACCATACATCTCTTTCATCA 59.122 41.667 0.00 0.00 0.00 3.07
6632 10732 5.220739 GCACACCATACATCTCTTTCATCAC 60.221 44.000 0.00 0.00 0.00 3.06
6633 10733 5.295292 CACACCATACATCTCTTTCATCACC 59.705 44.000 0.00 0.00 0.00 4.02
6634 10734 5.045651 ACACCATACATCTCTTTCATCACCA 60.046 40.000 0.00 0.00 0.00 4.17
6635 10735 5.526479 CACCATACATCTCTTTCATCACCAG 59.474 44.000 0.00 0.00 0.00 4.00
6636 10736 5.061853 CCATACATCTCTTTCATCACCAGG 58.938 45.833 0.00 0.00 0.00 4.45
6637 10737 3.641434 ACATCTCTTTCATCACCAGGG 57.359 47.619 0.00 0.00 0.00 4.45
6638 10738 2.240667 ACATCTCTTTCATCACCAGGGG 59.759 50.000 0.00 0.00 0.00 4.79
6639 10739 2.044793 TCTCTTTCATCACCAGGGGT 57.955 50.000 0.00 0.00 35.62 4.95
6648 10748 4.073201 ACCAGGGGTGATAGCCTG 57.927 61.111 0.00 0.00 35.71 4.85
6649 10749 1.396185 ACCAGGGGTGATAGCCTGA 59.604 57.895 0.00 0.00 35.71 3.86
6650 10750 0.029681 ACCAGGGGTGATAGCCTGAT 60.030 55.000 0.00 0.00 35.71 2.90
6651 10751 1.223077 ACCAGGGGTGATAGCCTGATA 59.777 52.381 0.00 0.00 35.71 2.15
6652 10752 1.625818 CCAGGGGTGATAGCCTGATAC 59.374 57.143 0.00 0.00 35.71 2.24
6653 10753 1.625818 CAGGGGTGATAGCCTGATACC 59.374 57.143 0.00 0.00 35.71 2.73
6654 10754 1.509961 AGGGGTGATAGCCTGATACCT 59.490 52.381 0.00 0.00 35.71 3.08
6655 10755 1.625818 GGGGTGATAGCCTGATACCTG 59.374 57.143 0.00 0.00 35.71 4.00
6656 10756 2.609747 GGGTGATAGCCTGATACCTGA 58.390 52.381 0.00 0.00 31.81 3.86
6657 10757 3.177228 GGGTGATAGCCTGATACCTGAT 58.823 50.000 0.00 0.00 31.81 2.90
6658 10758 4.353777 GGGTGATAGCCTGATACCTGATA 58.646 47.826 0.00 0.00 31.81 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.858344 CAGTAAAATGGAGCGAGGTACG 59.142 50.000 0.00 0.00 45.66 3.67
10 11 3.858247 ACAGTAAAATGGAGCGAGGTAC 58.142 45.455 0.00 0.00 0.00 3.34
11 12 4.546829 AACAGTAAAATGGAGCGAGGTA 57.453 40.909 0.00 0.00 0.00 3.08
12 13 3.418684 AACAGTAAAATGGAGCGAGGT 57.581 42.857 0.00 0.00 0.00 3.85
13 14 4.003648 AGAAACAGTAAAATGGAGCGAGG 58.996 43.478 0.00 0.00 0.00 4.63
14 15 4.690748 TGAGAAACAGTAAAATGGAGCGAG 59.309 41.667 0.00 0.00 0.00 5.03
15 16 4.637276 TGAGAAACAGTAAAATGGAGCGA 58.363 39.130 0.00 0.00 0.00 4.93
16 17 5.356882 TTGAGAAACAGTAAAATGGAGCG 57.643 39.130 0.00 0.00 0.00 5.03
17 18 8.268850 TCTATTGAGAAACAGTAAAATGGAGC 57.731 34.615 0.00 0.00 0.00 4.70
18 19 9.658799 TCTCTATTGAGAAACAGTAAAATGGAG 57.341 33.333 4.26 0.00 45.42 3.86
33 34 9.467796 TGAGATCTAACTGTTTCTCTATTGAGA 57.532 33.333 17.11 2.49 46.58 3.27
39 40 9.025041 TGTGATTGAGATCTAACTGTTTCTCTA 57.975 33.333 17.11 12.26 36.43 2.43
40 41 7.901029 TGTGATTGAGATCTAACTGTTTCTCT 58.099 34.615 17.11 9.47 36.43 3.10
41 42 8.539770 TTGTGATTGAGATCTAACTGTTTCTC 57.460 34.615 11.86 11.86 36.09 2.87
94 95 9.191995 CGTGAGCACACACATATAGAATTATTA 57.808 33.333 14.75 0.00 46.20 0.98
95 96 7.926018 TCGTGAGCACACACATATAGAATTATT 59.074 33.333 14.75 0.00 46.20 1.40
96 97 7.433680 TCGTGAGCACACACATATAGAATTAT 58.566 34.615 14.75 0.00 46.20 1.28
97 98 6.801575 TCGTGAGCACACACATATAGAATTA 58.198 36.000 14.75 0.00 46.20 1.40
98 99 5.660460 TCGTGAGCACACACATATAGAATT 58.340 37.500 14.75 0.00 46.20 2.17
99 100 5.262588 TCGTGAGCACACACATATAGAAT 57.737 39.130 14.75 0.00 46.20 2.40
100 101 4.712122 TCGTGAGCACACACATATAGAA 57.288 40.909 14.75 0.00 46.20 2.10
101 102 4.918810 ATCGTGAGCACACACATATAGA 57.081 40.909 14.75 2.01 46.20 1.98
102 103 5.043248 TCAATCGTGAGCACACACATATAG 58.957 41.667 14.75 0.00 46.20 1.31
103 104 5.004922 TCAATCGTGAGCACACACATATA 57.995 39.130 14.75 0.00 46.20 0.86
104 105 3.860641 TCAATCGTGAGCACACACATAT 58.139 40.909 14.75 0.00 46.20 1.78
105 106 3.311486 TCAATCGTGAGCACACACATA 57.689 42.857 14.75 0.00 46.20 2.29
106 107 2.168326 TCAATCGTGAGCACACACAT 57.832 45.000 14.75 2.73 46.20 3.21
107 108 1.799994 CATCAATCGTGAGCACACACA 59.200 47.619 14.75 0.27 46.20 3.72
108 109 1.129251 CCATCAATCGTGAGCACACAC 59.871 52.381 14.75 6.84 46.20 3.82
109 110 1.270785 ACCATCAATCGTGAGCACACA 60.271 47.619 14.75 2.32 46.20 3.72
110 111 1.129251 CACCATCAATCGTGAGCACAC 59.871 52.381 3.95 3.95 42.88 3.82
111 112 1.270785 ACACCATCAATCGTGAGCACA 60.271 47.619 1.20 0.00 37.14 4.57
112 113 1.129251 CACACCATCAATCGTGAGCAC 59.871 52.381 0.00 0.00 37.14 4.40
113 114 1.441738 CACACCATCAATCGTGAGCA 58.558 50.000 0.00 0.00 37.14 4.26
114 115 0.729116 CCACACCATCAATCGTGAGC 59.271 55.000 0.00 0.00 37.14 4.26
115 116 2.099141 ACCACACCATCAATCGTGAG 57.901 50.000 0.00 0.00 37.14 3.51
116 117 2.559698 AACCACACCATCAATCGTGA 57.440 45.000 0.00 0.00 38.41 4.35
117 118 2.677836 CCTAACCACACCATCAATCGTG 59.322 50.000 0.00 0.00 36.04 4.35
118 119 2.304761 ACCTAACCACACCATCAATCGT 59.695 45.455 0.00 0.00 0.00 3.73
119 120 2.985896 ACCTAACCACACCATCAATCG 58.014 47.619 0.00 0.00 0.00 3.34
120 121 5.099042 ACTACCTAACCACACCATCAATC 57.901 43.478 0.00 0.00 0.00 2.67
121 122 5.130477 CCTACTACCTAACCACACCATCAAT 59.870 44.000 0.00 0.00 0.00 2.57
122 123 4.468510 CCTACTACCTAACCACACCATCAA 59.531 45.833 0.00 0.00 0.00 2.57
123 124 4.028131 CCTACTACCTAACCACACCATCA 58.972 47.826 0.00 0.00 0.00 3.07
124 125 3.387050 CCCTACTACCTAACCACACCATC 59.613 52.174 0.00 0.00 0.00 3.51
125 126 3.013188 TCCCTACTACCTAACCACACCAT 59.987 47.826 0.00 0.00 0.00 3.55
126 127 2.382993 TCCCTACTACCTAACCACACCA 59.617 50.000 0.00 0.00 0.00 4.17
127 128 3.105959 TCCCTACTACCTAACCACACC 57.894 52.381 0.00 0.00 0.00 4.16
128 129 4.284178 TCATCCCTACTACCTAACCACAC 58.716 47.826 0.00 0.00 0.00 3.82
129 130 4.231195 TCTCATCCCTACTACCTAACCACA 59.769 45.833 0.00 0.00 0.00 4.17
130 131 4.801164 TCTCATCCCTACTACCTAACCAC 58.199 47.826 0.00 0.00 0.00 4.16
131 132 4.730392 TCTCTCATCCCTACTACCTAACCA 59.270 45.833 0.00 0.00 0.00 3.67
132 133 5.321934 TCTCTCATCCCTACTACCTAACC 57.678 47.826 0.00 0.00 0.00 2.85
133 134 6.603224 TCTTCTCTCATCCCTACTACCTAAC 58.397 44.000 0.00 0.00 0.00 2.34
134 135 6.843473 TCTTCTCTCATCCCTACTACCTAA 57.157 41.667 0.00 0.00 0.00 2.69
135 136 6.843473 TTCTTCTCTCATCCCTACTACCTA 57.157 41.667 0.00 0.00 0.00 3.08
136 137 5.735733 TTCTTCTCTCATCCCTACTACCT 57.264 43.478 0.00 0.00 0.00 3.08
137 138 5.894964 ACTTTCTTCTCTCATCCCTACTACC 59.105 44.000 0.00 0.00 0.00 3.18
138 139 7.262048 CAACTTTCTTCTCTCATCCCTACTAC 58.738 42.308 0.00 0.00 0.00 2.73
139 140 6.381420 CCAACTTTCTTCTCTCATCCCTACTA 59.619 42.308 0.00 0.00 0.00 1.82
140 141 5.188751 CCAACTTTCTTCTCTCATCCCTACT 59.811 44.000 0.00 0.00 0.00 2.57
141 142 5.423886 CCAACTTTCTTCTCTCATCCCTAC 58.576 45.833 0.00 0.00 0.00 3.18
183 184 5.039645 TCTTCTAGGGGATTTGGTGAATCT 58.960 41.667 0.00 0.00 43.08 2.40
268 269 3.701532 TGACGAACTTGCGGAATTTTT 57.298 38.095 0.00 0.00 35.12 1.94
295 296 8.495260 ACCCACCAAAATTTATTGACCTTTTTA 58.505 29.630 0.00 0.00 31.84 1.52
319 320 3.260884 TGTCTGACCACCTTTATCTCACC 59.739 47.826 5.17 0.00 0.00 4.02
321 322 5.560722 TTTGTCTGACCACCTTTATCTCA 57.439 39.130 5.17 0.00 0.00 3.27
389 390 6.128391 GCATTCACCTAACACGAGTTTCATAA 60.128 38.462 2.93 0.00 39.15 1.90
397 398 5.794687 TTAATGCATTCACCTAACACGAG 57.205 39.130 16.86 0.00 0.00 4.18
401 402 8.121305 AGATTGTTTAATGCATTCACCTAACA 57.879 30.769 16.86 15.33 0.00 2.41
717 1827 4.821589 CCCTCGCTTCGACCTGCC 62.822 72.222 0.00 0.00 0.00 4.85
731 1841 1.378646 TCGAGATGCGACTCACCCT 60.379 57.895 9.88 0.00 45.59 4.34
767 1877 1.796253 CGCGAGTACTACGGAATGCAA 60.796 52.381 0.00 0.00 0.00 4.08
769 1879 1.538117 GCGCGAGTACTACGGAATGC 61.538 60.000 12.10 2.79 0.00 3.56
775 1885 1.934956 CAGCAGCGCGAGTACTACG 60.935 63.158 12.10 12.26 0.00 3.51
776 1886 2.224885 GCAGCAGCGCGAGTACTAC 61.225 63.158 12.10 0.00 0.00 2.73
823 1933 2.436824 GGGAGAAGAAGTGCGGGC 60.437 66.667 0.00 0.00 0.00 6.13
825 1935 0.528684 GATCGGGAGAAGAAGTGCGG 60.529 60.000 0.00 0.00 45.37 5.69
829 1939 3.399952 TTAGGGATCGGGAGAAGAAGT 57.600 47.619 0.00 0.00 45.37 3.01
831 1941 3.646637 GGATTTAGGGATCGGGAGAAGAA 59.353 47.826 0.00 0.00 45.37 2.52
847 1957 6.015918 TGCAAAAAGAGGATTGGAGGATTTA 58.984 36.000 0.00 0.00 0.00 1.40
854 1964 2.559668 CTGCTGCAAAAAGAGGATTGGA 59.440 45.455 3.02 0.00 0.00 3.53
930 2040 1.270971 GACTAATTAACGCGACGCCA 58.729 50.000 15.93 0.00 0.00 5.69
952 2062 4.753877 CGTCTGTTCGCCGCTCGA 62.754 66.667 0.00 0.00 46.88 4.04
965 2075 3.302347 CTTCCAGCCGCCTTCGTCT 62.302 63.158 0.00 0.00 0.00 4.18
992 2102 3.621394 GCTTCGACATCGCTCCGC 61.621 66.667 0.00 0.00 39.60 5.54
1152 2262 1.517257 GAGGAGCACATGGACGACG 60.517 63.158 0.00 0.00 0.00 5.12
1153 2263 0.247736 AAGAGGAGCACATGGACGAC 59.752 55.000 0.00 0.00 0.00 4.34
1154 2264 0.532573 GAAGAGGAGCACATGGACGA 59.467 55.000 0.00 0.00 0.00 4.20
1165 2279 2.224378 TGTTGCAAGTGGAGAAGAGGAG 60.224 50.000 0.00 0.00 0.00 3.69
1225 2339 0.655733 CACGAAGCAGAAACACGGTT 59.344 50.000 0.00 0.00 0.00 4.44
1254 2368 0.514691 CACCGCTTCTCTTTCACTGC 59.485 55.000 0.00 0.00 0.00 4.40
1355 2469 1.906574 ACCAGCCGAATTGGAGAACTA 59.093 47.619 6.78 0.00 42.00 2.24
1368 2482 1.243902 ACATTTGTTGGTACCAGCCG 58.756 50.000 24.18 13.14 0.00 5.52
1433 2548 1.348064 ACCCACTGACAAATCCGAGA 58.652 50.000 0.00 0.00 0.00 4.04
1434 2549 2.496070 TCTACCCACTGACAAATCCGAG 59.504 50.000 0.00 0.00 0.00 4.63
1458 2573 2.797491 CACGACGCAACTATCAGATGA 58.203 47.619 0.00 0.00 0.00 2.92
1569 2684 4.087510 TCAATGCGCAATTTTCAGAGAG 57.912 40.909 17.11 0.00 0.00 3.20
1626 2745 3.873361 CAGTATCGGATGCAATGAACACT 59.127 43.478 8.78 0.00 0.00 3.55
1641 2760 6.032880 CGTAGCAATACATCACATCAGTATCG 59.967 42.308 0.00 0.00 0.00 2.92
1666 2785 3.533606 TCAGCTAATTCCTGTCTCAGC 57.466 47.619 6.08 0.00 0.00 4.26
1828 2947 4.450419 GCACTGCTCCATATGACATAGTTC 59.550 45.833 3.65 0.00 0.00 3.01
1839 2958 2.495155 AACATGTGCACTGCTCCATA 57.505 45.000 19.41 0.00 0.00 2.74
2043 3182 2.092968 GCATTCCTATGAGTGTGACCCA 60.093 50.000 0.00 0.00 33.37 4.51
2055 3194 8.355169 CAACAACAATAGCTAATGCATTCCTAT 58.645 33.333 16.86 18.44 42.74 2.57
2183 3324 9.513906 TTTATCATCAAAGAGGATAACACACAA 57.486 29.630 12.09 0.00 42.36 3.33
2217 3358 3.073062 AGTTCCCATTTAGCAGTCACAGT 59.927 43.478 0.00 0.00 0.00 3.55
2218 3359 3.438087 CAGTTCCCATTTAGCAGTCACAG 59.562 47.826 0.00 0.00 0.00 3.66
2325 3469 0.323087 GTGTGTGGTATGGGGTTCCC 60.323 60.000 0.00 0.00 45.71 3.97
2386 3530 3.192844 CGTAGAGAGGCTAAAGGTTGTGA 59.807 47.826 0.00 0.00 0.00 3.58
2409 3553 1.887344 AATTCCGGGTTGCATGGTGC 61.887 55.000 0.00 0.00 45.29 5.01
2416 3560 2.352715 CCTTTTCTGAATTCCGGGTTGC 60.353 50.000 0.00 0.00 0.00 4.17
2485 3629 2.223502 TGAAGAACGCTGCTACCGATAG 60.224 50.000 0.00 0.00 0.00 2.08
2491 3635 3.495001 AGAAAACTGAAGAACGCTGCTAC 59.505 43.478 0.00 0.00 0.00 3.58
2600 3746 0.953727 GTGTGATCCAGCACTTGCAA 59.046 50.000 3.62 0.00 45.16 4.08
2607 3753 1.339342 CCTGATGTGTGTGATCCAGCA 60.339 52.381 0.00 0.00 0.00 4.41
2670 3816 2.968574 GGGAGCAGGAGTAATGATCAGA 59.031 50.000 0.09 0.00 34.79 3.27
2732 3879 2.429930 CCTCACGGCTGGGTCAAA 59.570 61.111 0.00 0.00 0.00 2.69
2771 3918 0.034337 TTTCCTCCAGTGTACGTGCC 59.966 55.000 0.00 0.00 0.00 5.01
2790 3937 7.396418 TGGAATAAGTTTAAATCGGTACCAGT 58.604 34.615 13.54 0.00 0.00 4.00
2846 3993 3.734463 TGTGCAAAATCCGAAGTGAGTA 58.266 40.909 0.00 0.00 0.00 2.59
3037 4184 0.112995 TTGGTTGGAGCTGGAGCATT 59.887 50.000 0.00 0.00 45.16 3.56
3078 4225 4.662278 TCCTTCATACACTTCTTTTGGGG 58.338 43.478 0.00 0.00 0.00 4.96
3087 4234 5.723887 ACAGAGAGGAATCCTTCATACACTT 59.276 40.000 2.09 0.00 31.76 3.16
3095 4242 4.744795 TTGCTACAGAGAGGAATCCTTC 57.255 45.455 2.09 3.38 31.76 3.46
3154 4345 4.147449 CGACAGCCATGCTCCGGA 62.147 66.667 2.93 2.93 36.40 5.14
3156 4347 4.147449 TCCGACAGCCATGCTCCG 62.147 66.667 0.00 0.00 36.40 4.63
3157 4348 2.202987 CTCCGACAGCCATGCTCC 60.203 66.667 0.00 0.00 36.40 4.70
3158 4349 2.894387 GCTCCGACAGCCATGCTC 60.894 66.667 0.00 0.00 43.17 4.26
3174 4365 5.419857 CTAGGAGTCCTAGCCAATTCGGC 62.420 56.522 29.16 9.99 45.64 5.54
3175 4366 1.123928 AGGAGTCCTAGCCAATTCGG 58.876 55.000 10.94 0.00 31.37 4.30
3176 4367 3.651803 CTAGGAGTCCTAGCCAATTCG 57.348 52.381 29.16 8.17 45.64 3.34
3185 4376 2.317040 CCGAAATGGCTAGGAGTCCTA 58.683 52.381 18.15 18.15 34.61 2.94
3186 4377 1.123928 CCGAAATGGCTAGGAGTCCT 58.876 55.000 17.78 17.78 37.71 3.85
3187 4378 3.688553 CCGAAATGGCTAGGAGTCC 57.311 57.895 0.00 0.00 0.00 3.85
3219 4410 2.970974 GCGTGTTGCCCTCTGAAGC 61.971 63.158 0.00 0.00 37.76 3.86
3260 4452 0.752658 TATGGAGCTGTGATGTCCCG 59.247 55.000 0.00 0.00 0.00 5.14
3293 4485 3.401033 TCTTCTTCCGATGCTCACAAA 57.599 42.857 0.00 0.00 0.00 2.83
3363 4555 0.546122 TCCGCATACAAAGCCAGGAT 59.454 50.000 0.00 0.00 0.00 3.24
3509 4702 1.358787 TGCTTCATCCCACATTCCCTT 59.641 47.619 0.00 0.00 0.00 3.95
3623 4816 7.936496 TTCAAGTGCATATTATTCCTGTTCA 57.064 32.000 0.00 0.00 0.00 3.18
3624 4817 8.462016 AGTTTCAAGTGCATATTATTCCTGTTC 58.538 33.333 0.00 0.00 0.00 3.18
3676 4869 5.904362 AAATGAAGCTGGCCTAAACTAAG 57.096 39.130 3.32 0.00 0.00 2.18
3753 5135 6.015918 TGATCCCCAATTTCTACATGTGTTT 58.984 36.000 9.11 0.00 0.00 2.83
3879 5268 6.899393 AGCAAGGTATTGAAAATGAACTGA 57.101 33.333 0.00 0.00 38.83 3.41
3897 5302 3.470709 TGGAGTGAGTCTTTCAAGCAAG 58.529 45.455 0.00 0.00 37.61 4.01
3898 5303 3.470709 CTGGAGTGAGTCTTTCAAGCAA 58.529 45.455 0.00 0.00 37.61 3.91
3899 5304 2.808202 GCTGGAGTGAGTCTTTCAAGCA 60.808 50.000 15.03 0.00 37.61 3.91
3900 5305 1.803555 GCTGGAGTGAGTCTTTCAAGC 59.196 52.381 7.72 7.72 37.61 4.01
3901 5306 3.006752 AGAGCTGGAGTGAGTCTTTCAAG 59.993 47.826 0.00 0.00 37.61 3.02
3902 5307 2.968574 AGAGCTGGAGTGAGTCTTTCAA 59.031 45.455 0.00 0.00 37.61 2.69
3903 5308 2.560542 GAGAGCTGGAGTGAGTCTTTCA 59.439 50.000 0.00 0.00 0.00 2.69
3904 5309 2.094234 GGAGAGCTGGAGTGAGTCTTTC 60.094 54.545 0.00 0.00 0.00 2.62
3905 5310 1.899142 GGAGAGCTGGAGTGAGTCTTT 59.101 52.381 0.00 0.00 0.00 2.52
3906 5311 1.203112 TGGAGAGCTGGAGTGAGTCTT 60.203 52.381 0.00 0.00 0.00 3.01
3907 5312 0.407528 TGGAGAGCTGGAGTGAGTCT 59.592 55.000 0.00 0.00 0.00 3.24
3908 5313 1.067213 GTTGGAGAGCTGGAGTGAGTC 60.067 57.143 0.00 0.00 0.00 3.36
3909 5314 0.972883 GTTGGAGAGCTGGAGTGAGT 59.027 55.000 0.00 0.00 0.00 3.41
3910 5315 0.248843 GGTTGGAGAGCTGGAGTGAG 59.751 60.000 0.00 0.00 0.00 3.51
3911 5316 1.194781 GGGTTGGAGAGCTGGAGTGA 61.195 60.000 0.00 0.00 0.00 3.41
3912 5317 1.298014 GGGTTGGAGAGCTGGAGTG 59.702 63.158 0.00 0.00 0.00 3.51
3920 5325 2.032528 TGCGCTTGGGTTGGAGAG 59.967 61.111 9.73 0.00 0.00 3.20
3935 5340 1.615392 GATCAGGGGCCATAAATGTGC 59.385 52.381 4.39 0.00 0.00 4.57
3984 5389 4.762809 CGTGTAAACAGAGCAAGAAAGAC 58.237 43.478 0.00 0.00 0.00 3.01
4021 5426 4.214310 TGTTTCACACCTGGAATGACATT 58.786 39.130 0.00 0.00 0.00 2.71
4078 5992 6.924060 CGAATCTAAGACGAGTAATTTGGGAT 59.076 38.462 0.00 0.00 0.00 3.85
4085 5999 8.836268 ATCTAGACGAATCTAAGACGAGTAAT 57.164 34.615 0.00 0.00 36.98 1.89
4086 6000 9.190858 GTATCTAGACGAATCTAAGACGAGTAA 57.809 37.037 0.00 0.00 36.98 2.24
4087 6001 7.536964 CGTATCTAGACGAATCTAAGACGAGTA 59.463 40.741 0.00 0.00 45.82 2.59
4091 6005 5.632764 TCCGTATCTAGACGAATCTAAGACG 59.367 44.000 5.60 0.00 45.82 4.18
4102 6016 7.070798 GTCTTAGATTTGTCCGTATCTAGACG 58.929 42.308 0.00 0.00 42.55 4.18
4116 6030 6.458342 GCCCCGAATTACTTGTCTTAGATTTG 60.458 42.308 0.00 0.00 0.00 2.32
4117 6031 5.589050 GCCCCGAATTACTTGTCTTAGATTT 59.411 40.000 0.00 0.00 0.00 2.17
4118 6032 5.123936 GCCCCGAATTACTTGTCTTAGATT 58.876 41.667 0.00 0.00 0.00 2.40
4122 6036 3.516300 TCTGCCCCGAATTACTTGTCTTA 59.484 43.478 0.00 0.00 0.00 2.10
4125 6039 2.280628 CTCTGCCCCGAATTACTTGTC 58.719 52.381 0.00 0.00 0.00 3.18
4128 6042 0.546598 CCCTCTGCCCCGAATTACTT 59.453 55.000 0.00 0.00 0.00 2.24
4140 6075 3.944087 ACATGTTTTCTACTCCCTCTGC 58.056 45.455 0.00 0.00 0.00 4.26
4142 6077 4.597507 TCCAACATGTTTTCTACTCCCTCT 59.402 41.667 8.77 0.00 0.00 3.69
4174 6109 2.489329 GGTCATCACTCCCAACATGTTG 59.511 50.000 28.18 28.18 40.13 3.33
4175 6110 2.108075 TGGTCATCACTCCCAACATGTT 59.892 45.455 4.92 4.92 0.00 2.71
4176 6111 1.704628 TGGTCATCACTCCCAACATGT 59.295 47.619 0.00 0.00 0.00 3.21
4177 6112 2.495155 TGGTCATCACTCCCAACATG 57.505 50.000 0.00 0.00 0.00 3.21
4181 6116 0.036164 CGGTTGGTCATCACTCCCAA 59.964 55.000 0.00 0.00 35.93 4.12
4182 6117 1.676968 CGGTTGGTCATCACTCCCA 59.323 57.895 0.00 0.00 0.00 4.37
4183 6118 1.078426 CCGGTTGGTCATCACTCCC 60.078 63.158 0.00 0.00 0.00 4.30
4184 6119 4.617875 CCGGTTGGTCATCACTCC 57.382 61.111 0.00 0.00 0.00 3.85
4231 6166 6.717413 AGCATACATTTGCAAACAGTTTTTG 58.283 32.000 15.41 9.52 45.23 2.44
4540 6559 7.000472 CCAAAGGGATATACAACTGATGATGT 59.000 38.462 0.00 0.00 35.59 3.06
4541 6560 7.226441 TCCAAAGGGATATACAACTGATGATG 58.774 38.462 0.00 0.00 38.64 3.07
4570 6589 5.864474 CGCAGACTAAACAGTCAATAGAAGT 59.136 40.000 7.48 0.00 41.02 3.01
4590 6609 5.172232 CGAATAGTAATCAGAGTTGTCGCAG 59.828 44.000 0.00 0.00 0.00 5.18
4593 6612 5.681982 GGACGAATAGTAATCAGAGTTGTCG 59.318 44.000 0.00 0.00 0.00 4.35
4641 6660 3.016736 AGCGCAAATAACCACAGCTTAT 58.983 40.909 11.47 0.00 0.00 1.73
4644 6663 0.523072 CAGCGCAAATAACCACAGCT 59.477 50.000 11.47 0.00 0.00 4.24
4659 6678 1.078759 CGTCTGGAAACTAGGCAGCG 61.079 60.000 0.00 0.00 0.00 5.18
4722 6741 7.359595 TGCATACAAGCTTTAACAGTAACAAG 58.640 34.615 0.00 0.00 34.99 3.16
4824 7050 9.729281 ATCAATAGCAAACAATCAAAAGGAAAT 57.271 25.926 0.00 0.00 0.00 2.17
4931 7157 7.702348 GCAAATAAGCCTATGTTACCTTTCTTG 59.298 37.037 0.00 0.00 0.00 3.02
4948 7174 8.715191 ATCATAGCAGATACTAGCAAATAAGC 57.285 34.615 0.00 0.00 0.00 3.09
4967 7250 7.095270 TGAGCTGCACTATATCACAATCATAG 58.905 38.462 1.02 0.00 0.00 2.23
4980 7263 4.509230 CGACACATATTTGAGCTGCACTAT 59.491 41.667 1.02 0.00 0.00 2.12
5001 7284 2.729360 CAGTGCGACAGAAATGTTACGA 59.271 45.455 0.00 0.00 0.00 3.43
5038 7321 1.825474 GCTCCACTAGGCTTAGACACA 59.175 52.381 10.24 0.00 33.74 3.72
5173 7456 5.068460 AGTCAGTGACTGGCATTATAGACTC 59.932 44.000 24.93 0.00 41.76 3.36
5216 7500 5.129320 ACAAAAGGCAGGTCTTTGAAGAAAT 59.871 36.000 0.00 0.00 37.09 2.17
5225 7509 4.649218 ACAATACAACAAAAGGCAGGTCTT 59.351 37.500 0.00 0.00 0.00 3.01
5245 7535 7.395772 TGAATTATTGGAGGCAGATACAAACAA 59.604 33.333 0.00 0.00 0.00 2.83
5246 7536 6.889177 TGAATTATTGGAGGCAGATACAAACA 59.111 34.615 0.00 0.00 0.00 2.83
5247 7537 7.067494 ACTGAATTATTGGAGGCAGATACAAAC 59.933 37.037 0.00 0.00 0.00 2.93
5248 7538 7.067372 CACTGAATTATTGGAGGCAGATACAAA 59.933 37.037 0.00 0.00 0.00 2.83
5325 7626 4.202609 ACTCCATTTCTGTCCTCAAACCAT 60.203 41.667 0.00 0.00 0.00 3.55
5366 7675 9.226345 CAAAGATATTAGCGAATTCTTGTTTCC 57.774 33.333 3.52 0.00 30.00 3.13
5419 7735 3.552890 GGTTTGCACTTAAAAGCCCAGAG 60.553 47.826 0.00 0.00 0.00 3.35
5441 7757 1.322538 CCCAAAAGAAGCCGGGGATG 61.323 60.000 2.18 0.00 41.49 3.51
5448 7764 0.975887 TCCAATGCCCAAAAGAAGCC 59.024 50.000 0.00 0.00 0.00 4.35
5512 7832 4.657814 TGCCTTCTCTTTTAGTTCCCAT 57.342 40.909 0.00 0.00 0.00 4.00
5674 7998 1.838715 AGAGATCCTTCATGTGCTGCT 59.161 47.619 0.00 0.00 0.00 4.24
5709 8033 3.774528 TCAGCAGGTAGGCCGCAG 61.775 66.667 0.00 0.00 40.50 5.18
5712 8037 1.741770 GTTGTCAGCAGGTAGGCCG 60.742 63.158 0.00 0.00 40.50 6.13
5733 8058 5.221009 GCCTTAGAAGAATCCATCAGCAAAG 60.221 44.000 0.00 0.00 0.00 2.77
5748 8073 4.343526 TGAAGGAGAGCATAGCCTTAGAAG 59.656 45.833 0.00 0.00 41.85 2.85
5752 8077 2.700897 GGTGAAGGAGAGCATAGCCTTA 59.299 50.000 0.00 0.00 41.85 2.69
5756 8081 2.926778 ATGGTGAAGGAGAGCATAGC 57.073 50.000 0.00 0.00 29.82 2.97
5757 8082 5.188434 TCAAAATGGTGAAGGAGAGCATAG 58.812 41.667 0.00 0.00 31.37 2.23
5762 8087 6.208204 ACTTGAATCAAAATGGTGAAGGAGAG 59.792 38.462 0.00 0.00 0.00 3.20
5763 8088 6.070656 ACTTGAATCAAAATGGTGAAGGAGA 58.929 36.000 0.00 0.00 0.00 3.71
5764 8089 6.336842 ACTTGAATCAAAATGGTGAAGGAG 57.663 37.500 0.00 0.00 0.00 3.69
5765 8090 7.831691 TTACTTGAATCAAAATGGTGAAGGA 57.168 32.000 0.00 0.00 0.00 3.36
5770 8095 6.934056 TCCCATTACTTGAATCAAAATGGTG 58.066 36.000 25.68 19.97 38.79 4.17
5782 8107 6.767456 ACATGCAAAATTTCCCATTACTTGA 58.233 32.000 0.00 0.00 0.00 3.02
5787 8112 5.167121 CACGACATGCAAAATTTCCCATTA 58.833 37.500 0.00 0.00 0.00 1.90
5802 8127 2.847717 GCATACATTGTTGCACGACATG 59.152 45.455 14.83 0.00 38.72 3.21
5805 8130 2.900122 AGCATACATTGTTGCACGAC 57.100 45.000 19.16 0.00 41.35 4.34
5807 8132 2.910482 GACAAGCATACATTGTTGCACG 59.090 45.455 19.16 13.91 40.86 5.34
5824 8149 6.037391 CCTCACTTAACTTTAACGGTTGACAA 59.963 38.462 3.07 0.00 0.00 3.18
5831 8156 5.535333 TGAGACCTCACTTAACTTTAACGG 58.465 41.667 0.00 0.00 34.14 4.44
5898 8223 4.448210 TCAAAACTAGCACCGAAGAACTT 58.552 39.130 0.00 0.00 0.00 2.66
5930 8259 9.936759 AAAAGGTCTGATTAGTTGTTTTTCAAA 57.063 25.926 0.00 0.00 37.81 2.69
5967 8299 5.220777 CGTGCAAAAGAAAAACAGACCTCTA 60.221 40.000 0.00 0.00 0.00 2.43
5982 8314 1.466167 AGCTGCTACATCGTGCAAAAG 59.534 47.619 0.00 0.00 38.81 2.27
5983 8315 1.197492 CAGCTGCTACATCGTGCAAAA 59.803 47.619 0.00 0.00 38.81 2.44
5997 8329 3.061161 CGCAATAAACCAATTTCAGCTGC 59.939 43.478 9.47 0.00 0.00 5.25
6018 8350 5.993891 ACTCACATCATGCTTATTTATGCG 58.006 37.500 0.00 0.00 0.00 4.73
6114 8989 5.700722 TGGCTCACTATATACGATCGTTT 57.299 39.130 27.88 21.06 0.00 3.60
6116 8991 5.009310 TGTTTGGCTCACTATATACGATCGT 59.991 40.000 25.94 25.94 0.00 3.73
6122 8997 5.991606 TGCAGATGTTTGGCTCACTATATAC 59.008 40.000 0.00 0.00 0.00 1.47
6125 9000 4.191544 GTGCAGATGTTTGGCTCACTATA 58.808 43.478 0.00 0.00 0.00 1.31
6131 9006 1.881973 TCTTGTGCAGATGTTTGGCTC 59.118 47.619 0.00 0.00 0.00 4.70
6133 9008 2.798976 TTCTTGTGCAGATGTTTGGC 57.201 45.000 0.00 0.00 0.00 4.52
6183 9247 3.880047 CGGAGGATTGTACTTGTGGTA 57.120 47.619 0.00 0.00 0.00 3.25
6274 9823 3.405831 CACCATCTTGAGTCACACACAT 58.594 45.455 0.00 0.00 0.00 3.21
6275 9824 2.837498 CACCATCTTGAGTCACACACA 58.163 47.619 0.00 0.00 0.00 3.72
6276 9825 1.532868 GCACCATCTTGAGTCACACAC 59.467 52.381 0.00 0.00 0.00 3.82
6277 9826 1.140652 TGCACCATCTTGAGTCACACA 59.859 47.619 0.00 0.00 0.00 3.72
6327 9878 2.766263 ACTATTCAGCATCGGTTCCAGA 59.234 45.455 0.00 0.00 0.00 3.86
6344 9895 5.417811 CAGAAGAGCACATCAGTTCACTAT 58.582 41.667 0.00 0.00 0.00 2.12
6385 9936 0.251341 AGAATGCCACCACCTTCACC 60.251 55.000 0.00 0.00 0.00 4.02
6387 9938 0.770499 TGAGAATGCCACCACCTTCA 59.230 50.000 0.00 0.00 0.00 3.02
6388 9939 1.457346 CTGAGAATGCCACCACCTTC 58.543 55.000 0.00 0.00 0.00 3.46
6389 9940 0.038744 CCTGAGAATGCCACCACCTT 59.961 55.000 0.00 0.00 0.00 3.50
6475 10554 1.464608 TGTGCGCTCAGAAGTAAATGC 59.535 47.619 9.73 0.00 0.00 3.56
6491 10570 2.666508 ACGTCATTAACATCGACTGTGC 59.333 45.455 0.00 0.00 38.39 4.57
6527 10619 3.711863 TCCCAGCCAGCAAATTTAGATT 58.288 40.909 0.00 0.00 0.00 2.40
6577 10677 6.824557 TGTACTGTATCTATATGTGTACGCG 58.175 40.000 3.53 3.53 33.65 6.01
6595 10695 4.771590 ATGGTGTGCATCTTTTGTACTG 57.228 40.909 0.00 0.00 41.13 2.74
6596 10696 5.312895 TGTATGGTGTGCATCTTTTGTACT 58.687 37.500 0.00 0.00 41.13 2.73
6597 10697 5.621197 TGTATGGTGTGCATCTTTTGTAC 57.379 39.130 0.00 0.00 40.95 2.90
6598 10698 6.435430 GATGTATGGTGTGCATCTTTTGTA 57.565 37.500 0.00 0.00 43.94 2.41
6599 10699 5.314923 GATGTATGGTGTGCATCTTTTGT 57.685 39.130 0.00 0.00 43.94 2.83
6605 10705 4.877823 TGAAAGAGATGTATGGTGTGCATC 59.122 41.667 0.00 0.00 46.60 3.91
6606 10706 4.847198 TGAAAGAGATGTATGGTGTGCAT 58.153 39.130 0.00 0.00 35.71 3.96
6607 10707 4.284829 TGAAAGAGATGTATGGTGTGCA 57.715 40.909 0.00 0.00 0.00 4.57
6608 10708 4.877823 TGATGAAAGAGATGTATGGTGTGC 59.122 41.667 0.00 0.00 0.00 4.57
6609 10709 5.295292 GGTGATGAAAGAGATGTATGGTGTG 59.705 44.000 0.00 0.00 0.00 3.82
6610 10710 5.045651 TGGTGATGAAAGAGATGTATGGTGT 60.046 40.000 0.00 0.00 0.00 4.16
6611 10711 5.430886 TGGTGATGAAAGAGATGTATGGTG 58.569 41.667 0.00 0.00 0.00 4.17
6612 10712 5.397221 CCTGGTGATGAAAGAGATGTATGGT 60.397 44.000 0.00 0.00 0.00 3.55
6613 10713 5.061853 CCTGGTGATGAAAGAGATGTATGG 58.938 45.833 0.00 0.00 0.00 2.74
6614 10714 5.061853 CCCTGGTGATGAAAGAGATGTATG 58.938 45.833 0.00 0.00 0.00 2.39
6615 10715 4.103785 CCCCTGGTGATGAAAGAGATGTAT 59.896 45.833 0.00 0.00 0.00 2.29
6616 10716 3.455910 CCCCTGGTGATGAAAGAGATGTA 59.544 47.826 0.00 0.00 0.00 2.29
6617 10717 2.240667 CCCCTGGTGATGAAAGAGATGT 59.759 50.000 0.00 0.00 0.00 3.06
6618 10718 2.240667 ACCCCTGGTGATGAAAGAGATG 59.759 50.000 0.00 0.00 32.98 2.90
6619 10719 2.566746 ACCCCTGGTGATGAAAGAGAT 58.433 47.619 0.00 0.00 32.98 2.75
6620 10720 2.044793 ACCCCTGGTGATGAAAGAGA 57.955 50.000 0.00 0.00 32.98 3.10
6631 10731 0.029681 ATCAGGCTATCACCCCTGGT 60.030 55.000 6.82 0.00 46.79 4.00
6632 10732 1.625818 GTATCAGGCTATCACCCCTGG 59.374 57.143 6.82 0.00 46.79 4.45
6634 10734 1.509961 AGGTATCAGGCTATCACCCCT 59.490 52.381 6.89 0.00 0.00 4.79
6635 10735 1.625818 CAGGTATCAGGCTATCACCCC 59.374 57.143 6.89 0.00 0.00 4.95
6636 10736 2.609747 TCAGGTATCAGGCTATCACCC 58.390 52.381 6.89 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.