Multiple sequence alignment - TraesCS5B01G277200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G277200 chr5B 100.000 2985 0 0 1 2985 462884902 462881918 0.000000e+00 5513.0
1 TraesCS5B01G277200 chr5D 93.213 1989 78 23 741 2705 385605463 385603508 0.000000e+00 2872.0
2 TraesCS5B01G277200 chr5D 81.601 587 72 15 54 637 385606196 385605643 1.260000e-123 453.0
3 TraesCS5B01G277200 chr5D 91.818 220 7 8 2771 2985 385603493 385603280 2.250000e-76 296.0
4 TraesCS5B01G277200 chr5D 92.593 54 2 2 1 52 385605906 385605853 3.190000e-10 76.8
5 TraesCS5B01G277200 chr5D 90.566 53 5 0 1 53 385606275 385606223 1.480000e-08 71.3
6 TraesCS5B01G277200 chr5A 88.908 2308 144 52 741 2985 487366410 487364152 0.000000e+00 2741.0
7 TraesCS5B01G277200 chr7B 83.590 195 26 2 1563 1754 199855815 199855624 8.500000e-41 178.0
8 TraesCS5B01G277200 chr7B 77.941 136 19 9 1551 1676 577372555 577372421 1.150000e-09 75.0
9 TraesCS5B01G277200 chr7A 83.590 195 26 3 1563 1754 240956785 240956594 8.500000e-41 178.0
10 TraesCS5B01G277200 chr7A 76.642 137 19 9 1551 1676 617949385 617949519 2.480000e-06 63.9
11 TraesCS5B01G277200 chr7D 78.988 257 46 4 1562 1814 228985935 228985683 5.120000e-38 169.0
12 TraesCS5B01G277200 chr7D 93.478 46 3 0 1631 1676 535658829 535658784 5.340000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G277200 chr5B 462881918 462884902 2984 True 5513.00 5513 100.0000 1 2985 1 chr5B.!!$R1 2984
1 TraesCS5B01G277200 chr5D 385603280 385606275 2995 True 753.82 2872 89.9582 1 2985 5 chr5D.!!$R1 2984
2 TraesCS5B01G277200 chr5A 487364152 487366410 2258 True 2741.00 2741 88.9080 741 2985 1 chr5A.!!$R1 2244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 288 0.167251 CGCGCGTGGGAGTTTAAATT 59.833 50.0 24.19 0.0 0.0 1.82 F
1558 1722 0.181587 TTTTCAGGAACGGGCTGTCA 59.818 50.0 0.00 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 1743 0.671781 CGAGGCTGGTGAAGGACTTG 60.672 60.0 0.0 0.0 0.0 3.16 R
2768 2988 0.320771 GCCAAGAGAGACAAGCGGAA 60.321 55.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 7.372451 TGATTAACTAACAAAACATCCCTCG 57.628 36.000 0.00 0.00 0.00 4.63
58 85 1.532604 AACATCCCTCGCTCGTGTGA 61.533 55.000 0.31 0.31 0.00 3.58
65 92 2.327228 TCGCTCGTGTGAGAGTTCA 58.673 52.632 0.00 0.00 45.57 3.18
70 97 3.059884 GCTCGTGTGAGAGTTCAAATCA 58.940 45.455 0.00 0.00 45.57 2.57
71 98 3.122613 GCTCGTGTGAGAGTTCAAATCAG 59.877 47.826 0.00 0.00 45.57 2.90
74 101 3.120286 CGTGTGAGAGTTCAAATCAGTCG 59.880 47.826 0.00 0.00 34.49 4.18
75 102 4.299155 GTGTGAGAGTTCAAATCAGTCGA 58.701 43.478 0.00 0.00 34.49 4.20
87 114 6.755206 TCAAATCAGTCGAGAGGTTTCTTTA 58.245 36.000 0.00 0.00 32.53 1.85
95 122 6.094881 AGTCGAGAGGTTTCTTTAGAGAGATG 59.905 42.308 0.00 0.00 32.53 2.90
118 145 9.178758 GATGATACCAAATTAAAGTTGAGGACT 57.821 33.333 4.29 0.00 41.47 3.85
119 146 8.561738 TGATACCAAATTAAAGTTGAGGACTC 57.438 34.615 4.29 0.00 37.72 3.36
131 158 4.597507 AGTTGAGGACTCCATAGGTTTTCA 59.402 41.667 0.00 0.00 31.20 2.69
140 167 5.187186 ACTCCATAGGTTTTCAGACGTACAT 59.813 40.000 0.00 0.00 0.00 2.29
152 179 5.957798 TCAGACGTACATGTAACCCTAAAG 58.042 41.667 7.25 0.00 0.00 1.85
157 184 5.364735 ACGTACATGTAACCCTAAAGCCTAT 59.635 40.000 7.25 0.00 0.00 2.57
162 189 2.884894 AACCCTAAAGCCTATCGACG 57.115 50.000 0.00 0.00 0.00 5.12
165 192 2.963782 ACCCTAAAGCCTATCGACGAAT 59.036 45.455 0.00 0.00 0.00 3.34
181 208 5.918576 TCGACGAATGATATAACATGGACAC 59.081 40.000 0.00 0.00 0.00 3.67
182 209 5.920840 CGACGAATGATATAACATGGACACT 59.079 40.000 0.00 0.00 0.00 3.55
183 210 7.040961 TCGACGAATGATATAACATGGACACTA 60.041 37.037 0.00 0.00 0.00 2.74
184 211 7.593644 CGACGAATGATATAACATGGACACTAA 59.406 37.037 0.00 0.00 0.00 2.24
185 212 9.424319 GACGAATGATATAACATGGACACTAAT 57.576 33.333 0.00 0.00 0.00 1.73
186 213 9.208022 ACGAATGATATAACATGGACACTAATG 57.792 33.333 0.00 0.00 0.00 1.90
187 214 8.659491 CGAATGATATAACATGGACACTAATGG 58.341 37.037 0.00 0.00 0.00 3.16
188 215 9.725019 GAATGATATAACATGGACACTAATGGA 57.275 33.333 0.00 0.00 0.00 3.41
190 217 8.902540 TGATATAACATGGACACTAATGGAAC 57.097 34.615 0.00 0.00 0.00 3.62
191 218 7.655732 TGATATAACATGGACACTAATGGAACG 59.344 37.037 0.00 0.00 0.00 3.95
192 219 2.356135 ACATGGACACTAATGGAACGC 58.644 47.619 0.00 0.00 0.00 4.84
193 220 1.670811 CATGGACACTAATGGAACGCC 59.329 52.381 0.00 0.00 0.00 5.68
210 237 1.600663 CGCCACTCGCTCTAGGTTATG 60.601 57.143 0.00 0.00 34.21 1.90
226 253 4.287067 AGGTTATGGACATGTTCTCACACT 59.713 41.667 5.55 0.00 35.03 3.55
229 256 3.391506 TGGACATGTTCTCACACTCTG 57.608 47.619 5.55 0.00 35.03 3.35
232 259 1.417517 ACATGTTCTCACACTCTGGCA 59.582 47.619 0.00 0.00 35.03 4.92
242 269 2.225019 CACACTCTGGCAGATGTTTGTC 59.775 50.000 19.11 0.00 0.00 3.18
244 271 0.445436 CTCTGGCAGATGTTTGTCGC 59.555 55.000 19.11 0.00 0.00 5.19
245 272 1.133253 CTGGCAGATGTTTGTCGCG 59.867 57.895 9.42 0.00 0.00 5.87
246 273 2.202349 GGCAGATGTTTGTCGCGC 60.202 61.111 0.00 0.00 0.00 6.86
247 274 2.571611 GCAGATGTTTGTCGCGCG 60.572 61.111 26.76 26.76 0.00 6.86
248 275 2.853210 CAGATGTTTGTCGCGCGT 59.147 55.556 30.98 8.38 0.00 6.01
249 276 1.507713 CAGATGTTTGTCGCGCGTG 60.508 57.895 30.98 14.79 0.00 5.34
250 277 2.202171 GATGTTTGTCGCGCGTGG 60.202 61.111 30.98 6.38 0.00 4.94
257 284 2.431260 GTCGCGCGTGGGAGTTTA 60.431 61.111 30.98 3.31 37.78 2.01
261 288 0.167251 CGCGCGTGGGAGTTTAAATT 59.833 50.000 24.19 0.00 0.00 1.82
268 295 4.460505 CGTGGGAGTTTAAATTGTTCGAC 58.539 43.478 0.00 0.00 0.00 4.20
269 296 4.460505 GTGGGAGTTTAAATTGTTCGACG 58.539 43.478 0.00 0.00 0.00 5.12
270 297 3.499157 TGGGAGTTTAAATTGTTCGACGG 59.501 43.478 0.00 0.00 0.00 4.79
276 303 5.297527 AGTTTAAATTGTTCGACGGGTTTCT 59.702 36.000 0.00 0.00 0.00 2.52
279 306 2.312722 TTGTTCGACGGGTTTCTTGA 57.687 45.000 0.00 0.00 0.00 3.02
310 337 6.642683 AATACCAAATTAGAGTTGACGACG 57.357 37.500 0.00 0.00 0.00 5.12
312 339 2.093783 CCAAATTAGAGTTGACGACGCC 59.906 50.000 0.00 0.00 0.00 5.68
317 344 0.456221 AGAGTTGACGACGCCATAGG 59.544 55.000 0.00 0.00 0.00 2.57
322 349 2.172851 TGACGACGCCATAGGTTTTT 57.827 45.000 0.00 0.00 0.00 1.94
333 360 3.123959 CCATAGGTTTTTGGACGTACACG 59.876 47.826 0.00 0.00 46.33 4.49
334 361 0.939419 AGGTTTTTGGACGTACACGC 59.061 50.000 0.00 0.00 44.43 5.34
356 384 1.214923 ACCCTAAACCCACCGACAAAA 59.785 47.619 0.00 0.00 0.00 2.44
357 385 1.883926 CCCTAAACCCACCGACAAAAG 59.116 52.381 0.00 0.00 0.00 2.27
360 388 3.190535 CCTAAACCCACCGACAAAAGATG 59.809 47.826 0.00 0.00 0.00 2.90
371 400 5.067153 ACCGACAAAAGATGAAACATGACAA 59.933 36.000 0.00 0.00 0.00 3.18
406 435 8.197988 AGGTTATGATCATTAACTCACGAAAC 57.802 34.615 14.65 7.71 0.00 2.78
419 448 0.953960 ACGAAACCAACCCATCGCTC 60.954 55.000 0.00 0.00 38.80 5.03
420 449 1.644786 CGAAACCAACCCATCGCTCC 61.645 60.000 0.00 0.00 0.00 4.70
430 459 0.946221 CCATCGCTCCAGGTTATCGC 60.946 60.000 0.00 0.00 0.00 4.58
445 474 2.015736 ATCGCCATGTTCTCACACTC 57.984 50.000 0.00 0.00 35.03 3.51
446 475 0.969149 TCGCCATGTTCTCACACTCT 59.031 50.000 0.00 0.00 35.03 3.24
447 476 1.344438 TCGCCATGTTCTCACACTCTT 59.656 47.619 0.00 0.00 35.03 2.85
448 477 1.462283 CGCCATGTTCTCACACTCTTG 59.538 52.381 0.00 0.00 35.03 3.02
452 481 2.245159 TGTTCTCACACTCTTGCAGG 57.755 50.000 0.00 0.00 0.00 4.85
457 486 1.869767 CTCACACTCTTGCAGGTGTTC 59.130 52.381 15.95 0.00 43.65 3.18
464 493 2.715864 CTTGCAGGTGTTCGTTGGCG 62.716 60.000 0.00 0.00 39.92 5.69
482 511 2.159747 GGCGTGGATGTTCTAAACGTTC 60.160 50.000 0.00 0.00 36.65 3.95
483 512 2.471749 GCGTGGATGTTCTAAACGTTCG 60.472 50.000 0.00 0.00 36.65 3.95
492 522 5.830912 TGTTCTAAACGTTCGAGAGGTTTA 58.169 37.500 0.00 16.92 42.68 2.01
500 530 4.106197 CGTTCGAGAGGTTTATTGAGAGG 58.894 47.826 0.00 0.00 0.00 3.69
505 535 6.134055 TCGAGAGGTTTATTGAGAGGGATAA 58.866 40.000 0.00 0.00 0.00 1.75
506 536 6.782988 TCGAGAGGTTTATTGAGAGGGATAAT 59.217 38.462 0.00 0.00 0.00 1.28
513 543 9.588096 GGTTTATTGAGAGGGATAATACCAAAT 57.412 33.333 0.00 0.00 0.00 2.32
522 552 9.794719 AGAGGGATAATACCAAATTAAAGTAGC 57.205 33.333 0.00 0.00 0.00 3.58
526 556 9.227777 GGATAATACCAAATTAAAGTAGCCGAT 57.772 33.333 0.00 0.00 0.00 4.18
533 563 7.177041 ACCAAATTAAAGTAGCCGATACCAAAA 59.823 33.333 0.00 0.00 34.67 2.44
534 564 8.030106 CCAAATTAAAGTAGCCGATACCAAAAA 58.970 33.333 0.00 0.00 34.67 1.94
555 585 2.134789 ATCCGACTTACACGTACCCT 57.865 50.000 0.00 0.00 0.00 4.34
586 616 1.153353 GACACACCATACAACACGGG 58.847 55.000 0.00 0.00 0.00 5.28
598 628 3.746940 ACAACACGGGCAAATTAGTACT 58.253 40.909 0.00 0.00 0.00 2.73
600 630 4.692155 ACAACACGGGCAAATTAGTACTAC 59.308 41.667 0.91 0.00 0.00 2.73
601 631 4.540359 ACACGGGCAAATTAGTACTACA 57.460 40.909 0.91 0.00 0.00 2.74
602 632 4.897140 ACACGGGCAAATTAGTACTACAA 58.103 39.130 0.91 0.00 0.00 2.41
603 633 4.933400 ACACGGGCAAATTAGTACTACAAG 59.067 41.667 0.91 0.00 0.00 3.16
604 634 4.331717 CACGGGCAAATTAGTACTACAAGG 59.668 45.833 0.91 0.00 0.00 3.61
605 635 3.311596 CGGGCAAATTAGTACTACAAGGC 59.688 47.826 0.91 4.82 0.00 4.35
606 636 3.311596 GGGCAAATTAGTACTACAAGGCG 59.688 47.826 0.91 0.00 0.00 5.52
607 637 4.186159 GGCAAATTAGTACTACAAGGCGA 58.814 43.478 0.91 0.00 0.00 5.54
608 638 4.033702 GGCAAATTAGTACTACAAGGCGAC 59.966 45.833 0.91 0.00 0.00 5.19
609 639 4.628333 GCAAATTAGTACTACAAGGCGACA 59.372 41.667 0.91 0.00 0.00 4.35
610 640 5.220416 GCAAATTAGTACTACAAGGCGACAG 60.220 44.000 0.91 0.00 0.00 3.51
613 643 3.572604 AGTACTACAAGGCGACAGAAC 57.427 47.619 0.00 0.00 0.00 3.01
637 667 3.614399 CTGATTCCAGGGTATCGGC 57.386 57.895 1.45 0.00 36.77 5.54
638 668 1.051812 CTGATTCCAGGGTATCGGCT 58.948 55.000 1.45 0.00 36.77 5.52
639 669 0.758734 TGATTCCAGGGTATCGGCTG 59.241 55.000 1.26 0.00 0.00 4.85
652 795 1.334160 TCGGCTGGTTCTTACACTCA 58.666 50.000 0.00 0.00 0.00 3.41
673 816 0.865769 GCGGATGTTTGTTCGACACT 59.134 50.000 0.00 0.00 0.00 3.55
674 817 1.398451 GCGGATGTTTGTTCGACACTG 60.398 52.381 0.00 0.00 0.00 3.66
700 844 5.240623 AGTCGAATAGTTCTAGAGGCATCTG 59.759 44.000 11.96 1.18 36.96 2.90
708 852 0.400525 TAGAGGCATCTGGAAGGGGG 60.401 60.000 11.96 0.00 36.96 5.40
709 853 2.003548 GAGGCATCTGGAAGGGGGT 61.004 63.158 0.00 0.00 0.00 4.95
710 854 1.544917 AGGCATCTGGAAGGGGGTT 60.545 57.895 0.00 0.00 0.00 4.11
711 855 1.076705 GGCATCTGGAAGGGGGTTC 60.077 63.158 0.00 0.00 0.00 3.62
712 856 1.691219 GCATCTGGAAGGGGGTTCA 59.309 57.895 0.00 0.00 36.82 3.18
713 857 0.259938 GCATCTGGAAGGGGGTTCAT 59.740 55.000 0.00 0.00 36.82 2.57
714 858 2.025863 GCATCTGGAAGGGGGTTCATG 61.026 57.143 0.00 0.00 36.82 3.07
715 859 1.285962 CATCTGGAAGGGGGTTCATGT 59.714 52.381 0.00 0.00 36.82 3.21
716 860 1.455822 TCTGGAAGGGGGTTCATGTT 58.544 50.000 0.00 0.00 36.82 2.71
717 861 1.354368 TCTGGAAGGGGGTTCATGTTC 59.646 52.381 0.00 0.00 36.82 3.18
718 862 0.407918 TGGAAGGGGGTTCATGTTCC 59.592 55.000 2.79 2.79 36.82 3.62
719 863 0.324368 GGAAGGGGGTTCATGTTCCC 60.324 60.000 15.97 15.97 42.73 3.97
755 899 4.212716 AGAAGAAAAGGGGTTTGTGTACC 58.787 43.478 0.00 0.00 37.47 3.34
774 918 2.704065 ACCACACACTTTAGGCAGTAGT 59.296 45.455 0.00 0.00 0.00 2.73
797 944 1.410932 GGTGCATTGGGTTATAGGCCA 60.411 52.381 5.01 0.00 0.00 5.36
798 945 2.597455 GTGCATTGGGTTATAGGCCAT 58.403 47.619 5.01 0.00 0.00 4.40
813 960 2.381445 CCATAGAGGATCCTGGCCC 58.619 63.158 22.02 4.23 41.22 5.80
917 1064 3.010696 ACCCATTTCTTCCTCTTTCCTCC 59.989 47.826 0.00 0.00 0.00 4.30
1158 1317 3.453988 GAGAGCTCCTCCATCGGG 58.546 66.667 10.93 0.00 35.87 5.14
1224 1383 2.114411 GTTGGTGGCGAAGGGGAA 59.886 61.111 0.00 0.00 0.00 3.97
1419 1582 3.181514 GCAAAAGCGCGAGTAGGAAATTA 60.182 43.478 12.10 0.00 0.00 1.40
1426 1589 5.047943 AGCGCGAGTAGGAAATTAGTATGAT 60.048 40.000 12.10 0.00 0.00 2.45
1491 1655 5.724239 CAATTGCAATTGATTTGATCGAGC 58.276 37.500 37.67 0.00 46.72 5.03
1500 1664 2.568696 TTTGATCGAGCGAGGAAGAG 57.431 50.000 0.00 0.00 0.00 2.85
1501 1665 1.751437 TTGATCGAGCGAGGAAGAGA 58.249 50.000 0.00 0.00 0.00 3.10
1504 1668 0.821711 ATCGAGCGAGGAAGAGAGGG 60.822 60.000 0.00 0.00 0.00 4.30
1542 1706 4.048504 CCTTCGTTTTCTTGGCGATTTTT 58.951 39.130 0.00 0.00 34.52 1.94
1558 1722 0.181587 TTTTCAGGAACGGGCTGTCA 59.818 50.000 0.00 0.00 0.00 3.58
1573 1737 2.125673 TCAAGCTTCTACGCCGGC 60.126 61.111 19.07 19.07 0.00 6.13
1579 1743 1.810030 CTTCTACGCCGGCAAGTCC 60.810 63.158 28.98 0.00 0.00 3.85
1687 1851 1.746615 CATTCTGGCCACCTGGTCG 60.747 63.158 0.00 0.00 44.44 4.79
1783 1947 4.430765 GGCGACGAAGGCGAGGAA 62.431 66.667 0.00 0.00 41.64 3.36
1884 2048 0.946221 CTCAGCGTGAACACCCAGAC 60.946 60.000 0.00 0.00 0.00 3.51
1885 2049 1.961277 CAGCGTGAACACCCAGACC 60.961 63.158 0.00 0.00 0.00 3.85
2009 2173 2.349249 CGAATTCGCAGCCATTGATCTC 60.349 50.000 15.93 0.00 0.00 2.75
2021 2185 3.054875 CCATTGATCTCTCTTGTGTCCCA 60.055 47.826 0.00 0.00 0.00 4.37
2031 2195 4.646945 TCTCTTGTGTCCCATAGATCTGTC 59.353 45.833 5.18 0.00 0.00 3.51
2123 2288 5.605564 TTCGTTGTGTTCTTGTATCCATG 57.394 39.130 0.00 0.00 0.00 3.66
2124 2289 4.637276 TCGTTGTGTTCTTGTATCCATGT 58.363 39.130 0.00 0.00 0.00 3.21
2125 2290 4.688879 TCGTTGTGTTCTTGTATCCATGTC 59.311 41.667 0.00 0.00 0.00 3.06
2126 2291 4.142902 CGTTGTGTTCTTGTATCCATGTCC 60.143 45.833 0.00 0.00 0.00 4.02
2152 2317 1.444553 CGTTGACCTCGCTCACCTC 60.445 63.158 0.00 0.00 0.00 3.85
2370 2545 1.799258 GATCCCCGCCATGATTGTGC 61.799 60.000 0.00 0.00 0.00 4.57
2371 2546 2.288642 ATCCCCGCCATGATTGTGCT 62.289 55.000 0.00 0.00 0.00 4.40
2399 2578 0.252375 AAGTGGGTAGGTCGCCCTTA 60.252 55.000 0.00 0.00 46.22 2.69
2401 2580 0.177373 GTGGGTAGGTCGCCCTTAAG 59.823 60.000 0.00 0.00 46.22 1.85
2403 2582 1.145598 GGTAGGTCGCCCTTAAGCC 59.854 63.158 0.00 0.00 42.66 4.35
2421 2600 0.393820 CCATGCTTTTGCCTTGTGGT 59.606 50.000 0.00 0.00 46.87 4.16
2423 2602 0.393820 ATGCTTTTGCCTTGTGGTGG 59.606 50.000 0.00 0.00 46.87 4.61
2425 2604 1.398958 GCTTTTGCCTTGTGGTGGGA 61.399 55.000 0.00 0.00 40.15 4.37
2426 2605 1.118838 CTTTTGCCTTGTGGTGGGAA 58.881 50.000 0.00 0.00 35.27 3.97
2428 2607 0.758685 TTTGCCTTGTGGTGGGAAGG 60.759 55.000 0.00 0.00 41.62 3.46
2431 2610 1.074951 CCTTGTGGTGGGAAGGGAC 59.925 63.158 0.00 0.00 35.93 4.46
2532 2729 1.084289 GCTTTTGCAGGTACCGGTAG 58.916 55.000 16.41 4.58 46.58 3.18
2533 2730 1.609841 GCTTTTGCAGGTACCGGTAGT 60.610 52.381 16.41 1.97 46.58 2.73
2534 2731 2.354003 GCTTTTGCAGGTACCGGTAGTA 60.354 50.000 16.41 0.00 46.58 1.82
2535 2732 3.865684 GCTTTTGCAGGTACCGGTAGTAA 60.866 47.826 16.41 6.67 46.58 2.24
2581 2786 1.128809 TGGGTACGCTTCTTTCCCCA 61.129 55.000 11.59 0.00 39.77 4.96
2618 2823 1.663379 TAGATCTGTCACCACGGCGG 61.663 60.000 13.24 0.00 42.50 6.13
2696 2901 0.591659 GGCAAGAACAGAAACGGGTC 59.408 55.000 0.00 0.00 0.00 4.46
2700 2905 2.663852 AACAGAAACGGGTCGCCG 60.664 61.111 0.00 0.00 39.31 6.46
2708 2928 2.278726 CGGGTCGCCGCGTAAATA 60.279 61.111 13.39 0.00 41.63 1.40
2709 2929 1.877617 CGGGTCGCCGCGTAAATAA 60.878 57.895 13.39 0.00 41.63 1.40
2710 2930 1.419874 CGGGTCGCCGCGTAAATAAA 61.420 55.000 13.39 0.00 41.63 1.40
2711 2931 0.026674 GGGTCGCCGCGTAAATAAAC 59.973 55.000 13.39 1.09 0.00 2.01
2712 2932 0.720590 GGTCGCCGCGTAAATAAACA 59.279 50.000 13.39 0.00 0.00 2.83
2713 2933 1.128321 GGTCGCCGCGTAAATAAACAA 59.872 47.619 13.39 0.00 0.00 2.83
2714 2934 2.424341 GTCGCCGCGTAAATAAACAAG 58.576 47.619 13.39 0.00 0.00 3.16
2731 2951 3.449227 GCCGCTTGCTTTACCCCC 61.449 66.667 0.00 0.00 36.87 5.40
2751 2971 1.393539 CAACACGACGTGGATCCATTC 59.606 52.381 29.86 16.15 37.94 2.67
2756 2976 4.058124 CACGACGTGGATCCATTCATTAT 58.942 43.478 19.62 0.00 0.00 1.28
2759 2979 4.152402 CGACGTGGATCCATTCATTATTCC 59.848 45.833 19.62 0.00 0.00 3.01
2768 2988 2.818751 TTCATTATTCCGGGGCTTGT 57.181 45.000 0.00 0.00 0.00 3.16
2794 3019 0.906756 TGTCTCTCTTGGCCTGGGAG 60.907 60.000 16.81 16.81 0.00 4.30
2795 3020 0.616111 GTCTCTCTTGGCCTGGGAGA 60.616 60.000 20.16 20.16 35.25 3.71
2796 3021 0.117140 TCTCTCTTGGCCTGGGAGAA 59.883 55.000 21.27 9.28 35.97 2.87
2797 3022 0.540923 CTCTCTTGGCCTGGGAGAAG 59.459 60.000 17.70 6.19 35.97 2.85
2798 3023 0.117140 TCTCTTGGCCTGGGAGAAGA 59.883 55.000 16.44 9.77 33.82 2.87
2903 3134 4.879545 TGAAGTTTTTAACCTTGCTCTCGT 59.120 37.500 0.00 0.00 0.00 4.18
2921 3152 6.403333 TCTCGTATTGTTTTCATACAGCAC 57.597 37.500 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.443869 CACGAGCGAGGGATGTTTTG 59.556 55.000 0.00 0.00 0.00 2.44
37 38 0.034896 ACACGAGCGAGGGATGTTTT 59.965 50.000 0.00 0.00 0.00 2.43
38 39 0.670546 CACACGAGCGAGGGATGTTT 60.671 55.000 0.00 0.00 0.00 2.83
43 44 2.033602 TCTCACACGAGCGAGGGA 59.966 61.111 0.00 0.00 39.30 4.20
49 50 3.059884 TGATTTGAACTCTCACACGAGC 58.940 45.455 0.00 0.00 39.30 5.03
58 85 3.829601 ACCTCTCGACTGATTTGAACTCT 59.170 43.478 0.00 0.00 0.00 3.24
63 90 4.873746 AGAAACCTCTCGACTGATTTGA 57.126 40.909 0.00 0.00 0.00 2.69
65 92 6.994221 TCTAAAGAAACCTCTCGACTGATTT 58.006 36.000 0.00 0.00 0.00 2.17
70 97 5.562635 TCTCTCTAAAGAAACCTCTCGACT 58.437 41.667 0.00 0.00 0.00 4.18
71 98 5.883503 TCTCTCTAAAGAAACCTCTCGAC 57.116 43.478 0.00 0.00 0.00 4.20
74 101 8.357402 GGTATCATCTCTCTAAAGAAACCTCTC 58.643 40.741 0.00 0.00 0.00 3.20
75 102 7.841729 TGGTATCATCTCTCTAAAGAAACCTCT 59.158 37.037 0.00 0.00 0.00 3.69
95 122 7.610305 TGGAGTCCTCAACTTTAATTTGGTATC 59.390 37.037 11.33 0.00 38.74 2.24
114 141 3.056035 ACGTCTGAAAACCTATGGAGTCC 60.056 47.826 0.73 0.73 0.00 3.85
118 145 5.046878 ACATGTACGTCTGAAAACCTATGGA 60.047 40.000 0.00 0.00 0.00 3.41
119 146 5.175859 ACATGTACGTCTGAAAACCTATGG 58.824 41.667 0.00 0.00 0.00 2.74
131 158 4.382362 GGCTTTAGGGTTACATGTACGTCT 60.382 45.833 4.68 5.76 0.00 4.18
140 167 3.067180 CGTCGATAGGCTTTAGGGTTACA 59.933 47.826 0.00 0.00 39.78 2.41
152 179 6.199154 CCATGTTATATCATTCGTCGATAGGC 59.801 42.308 0.00 0.00 37.35 3.93
157 184 5.918576 GTGTCCATGTTATATCATTCGTCGA 59.081 40.000 0.00 0.00 0.00 4.20
162 189 9.725019 TCCATTAGTGTCCATGTTATATCATTC 57.275 33.333 0.00 0.00 0.00 2.67
165 192 7.655732 CGTTCCATTAGTGTCCATGTTATATCA 59.344 37.037 0.00 0.00 0.00 2.15
181 208 2.006772 GCGAGTGGCGTTCCATTAG 58.993 57.895 0.00 0.00 45.62 1.73
182 209 4.195308 GCGAGTGGCGTTCCATTA 57.805 55.556 0.00 0.00 45.62 1.90
191 218 1.269831 CCATAACCTAGAGCGAGTGGC 60.270 57.143 0.00 0.00 44.05 5.01
192 219 2.034812 GTCCATAACCTAGAGCGAGTGG 59.965 54.545 0.00 0.00 0.00 4.00
193 220 2.688446 TGTCCATAACCTAGAGCGAGTG 59.312 50.000 0.00 0.00 0.00 3.51
194 221 3.014304 TGTCCATAACCTAGAGCGAGT 57.986 47.619 0.00 0.00 0.00 4.18
195 222 3.319405 ACATGTCCATAACCTAGAGCGAG 59.681 47.826 0.00 0.00 0.00 5.03
196 223 3.296854 ACATGTCCATAACCTAGAGCGA 58.703 45.455 0.00 0.00 0.00 4.93
197 224 3.735237 ACATGTCCATAACCTAGAGCG 57.265 47.619 0.00 0.00 0.00 5.03
198 225 5.163405 TGAGAACATGTCCATAACCTAGAGC 60.163 44.000 0.00 0.00 0.00 4.09
199 226 6.127338 TGTGAGAACATGTCCATAACCTAGAG 60.127 42.308 0.00 0.00 0.00 2.43
210 237 2.693069 CCAGAGTGTGAGAACATGTCC 58.307 52.381 0.00 0.00 0.00 4.02
226 253 1.291184 CGCGACAAACATCTGCCAGA 61.291 55.000 0.00 0.00 0.00 3.86
229 256 2.202349 GCGCGACAAACATCTGCC 60.202 61.111 12.10 0.00 0.00 4.85
232 259 2.667318 CCACGCGCGACAAACATCT 61.667 57.895 39.36 7.53 0.00 2.90
242 269 0.167251 AATTTAAACTCCCACGCGCG 59.833 50.000 30.96 30.96 0.00 6.86
244 271 2.981400 ACAATTTAAACTCCCACGCG 57.019 45.000 3.53 3.53 0.00 6.01
245 272 3.058777 TCGAACAATTTAAACTCCCACGC 60.059 43.478 0.00 0.00 0.00 5.34
246 273 4.460505 GTCGAACAATTTAAACTCCCACG 58.539 43.478 0.00 0.00 0.00 4.94
247 274 4.460505 CGTCGAACAATTTAAACTCCCAC 58.539 43.478 0.00 0.00 0.00 4.61
248 275 3.499157 CCGTCGAACAATTTAAACTCCCA 59.501 43.478 0.00 0.00 0.00 4.37
249 276 3.120095 CCCGTCGAACAATTTAAACTCCC 60.120 47.826 0.00 0.00 0.00 4.30
250 277 3.499537 ACCCGTCGAACAATTTAAACTCC 59.500 43.478 0.00 0.00 0.00 3.85
257 284 3.628487 TCAAGAAACCCGTCGAACAATTT 59.372 39.130 0.00 0.00 0.00 1.82
261 288 1.409790 TCTCAAGAAACCCGTCGAACA 59.590 47.619 0.00 0.00 0.00 3.18
268 295 6.183360 TGGTATTATCTCTCTCAAGAAACCCG 60.183 42.308 0.00 0.00 0.00 5.28
269 296 7.125792 TGGTATTATCTCTCTCAAGAAACCC 57.874 40.000 0.00 0.00 0.00 4.11
270 297 9.620259 ATTTGGTATTATCTCTCTCAAGAAACC 57.380 33.333 0.00 0.00 0.00 3.27
299 326 0.172803 ACCTATGGCGTCGTCAACTC 59.827 55.000 2.47 0.00 0.00 3.01
310 337 3.075884 TGTACGTCCAAAAACCTATGGC 58.924 45.455 0.00 0.00 36.62 4.40
312 339 3.423907 GCGTGTACGTCCAAAAACCTATG 60.424 47.826 6.27 0.00 42.22 2.23
317 344 2.103388 GTTGCGTGTACGTCCAAAAAC 58.897 47.619 6.27 0.00 42.22 2.43
322 349 1.177895 TAGGGTTGCGTGTACGTCCA 61.178 55.000 6.27 0.00 42.22 4.02
333 360 1.073548 TCGGTGGGTTTAGGGTTGC 59.926 57.895 0.00 0.00 0.00 4.17
334 361 0.108963 TGTCGGTGGGTTTAGGGTTG 59.891 55.000 0.00 0.00 0.00 3.77
385 414 7.065324 GGTTGGTTTCGTGAGTTAATGATCATA 59.935 37.037 9.04 0.00 0.00 2.15
389 418 4.457949 GGGTTGGTTTCGTGAGTTAATGAT 59.542 41.667 0.00 0.00 0.00 2.45
390 419 3.816523 GGGTTGGTTTCGTGAGTTAATGA 59.183 43.478 0.00 0.00 0.00 2.57
391 420 3.566322 TGGGTTGGTTTCGTGAGTTAATG 59.434 43.478 0.00 0.00 0.00 1.90
406 435 2.124570 CCTGGAGCGATGGGTTGG 60.125 66.667 0.00 0.00 0.00 3.77
419 448 2.213499 GAGAACATGGCGATAACCTGG 58.787 52.381 0.00 0.00 0.00 4.45
420 449 2.609459 GTGAGAACATGGCGATAACCTG 59.391 50.000 0.00 0.00 0.00 4.00
430 459 2.483106 CTGCAAGAGTGTGAGAACATGG 59.517 50.000 0.00 0.00 34.07 3.66
445 474 1.008538 GCCAACGAACACCTGCAAG 60.009 57.895 0.00 0.00 0.00 4.01
446 475 2.829206 CGCCAACGAACACCTGCAA 61.829 57.895 0.00 0.00 43.93 4.08
447 476 3.276091 CGCCAACGAACACCTGCA 61.276 61.111 0.00 0.00 43.93 4.41
448 477 3.276846 ACGCCAACGAACACCTGC 61.277 61.111 0.00 0.00 43.93 4.85
452 481 1.206578 CATCCACGCCAACGAACAC 59.793 57.895 0.00 0.00 43.93 3.32
464 493 4.232221 TCTCGAACGTTTAGAACATCCAC 58.768 43.478 0.46 0.00 0.00 4.02
482 511 4.946478 ATCCCTCTCAATAAACCTCTCG 57.054 45.455 0.00 0.00 0.00 4.04
483 512 8.315482 GGTATTATCCCTCTCAATAAACCTCTC 58.685 40.741 0.00 0.00 0.00 3.20
500 530 8.611654 TCGGCTACTTTAATTTGGTATTATCC 57.388 34.615 0.00 0.00 0.00 2.59
505 535 7.511268 TGGTATCGGCTACTTTAATTTGGTAT 58.489 34.615 0.00 0.00 0.00 2.73
506 536 6.887013 TGGTATCGGCTACTTTAATTTGGTA 58.113 36.000 0.00 0.00 0.00 3.25
533 563 3.259123 AGGGTACGTGTAAGTCGGATTTT 59.741 43.478 0.00 0.00 0.00 1.82
534 564 2.827921 AGGGTACGTGTAAGTCGGATTT 59.172 45.455 0.00 0.00 0.00 2.17
535 565 2.450476 AGGGTACGTGTAAGTCGGATT 58.550 47.619 0.00 0.00 0.00 3.01
536 566 2.134789 AGGGTACGTGTAAGTCGGAT 57.865 50.000 0.00 0.00 0.00 4.18
541 571 3.007940 GGGGTTTAAGGGTACGTGTAAGT 59.992 47.826 0.00 0.00 0.00 2.24
543 573 2.975489 TGGGGTTTAAGGGTACGTGTAA 59.025 45.455 0.00 0.00 0.00 2.41
545 575 1.072173 GTGGGGTTTAAGGGTACGTGT 59.928 52.381 0.00 0.00 0.00 4.49
555 585 0.179023 GGTGTGTCGGTGGGGTTTAA 60.179 55.000 0.00 0.00 0.00 1.52
586 616 4.628333 TGTCGCCTTGTAGTACTAATTTGC 59.372 41.667 3.61 5.07 0.00 3.68
598 628 1.066430 GGATGGTTCTGTCGCCTTGTA 60.066 52.381 0.00 0.00 0.00 2.41
600 630 1.026718 GGGATGGTTCTGTCGCCTTG 61.027 60.000 0.00 0.00 0.00 3.61
601 631 1.201429 AGGGATGGTTCTGTCGCCTT 61.201 55.000 0.00 0.00 0.00 4.35
602 632 1.613630 AGGGATGGTTCTGTCGCCT 60.614 57.895 0.00 0.00 0.00 5.52
603 633 1.450312 CAGGGATGGTTCTGTCGCC 60.450 63.158 0.00 0.00 0.00 5.54
604 634 0.179000 ATCAGGGATGGTTCTGTCGC 59.821 55.000 0.00 0.00 33.13 5.19
605 635 2.555199 GAATCAGGGATGGTTCTGTCG 58.445 52.381 0.00 0.00 33.13 4.35
606 636 2.239654 TGGAATCAGGGATGGTTCTGTC 59.760 50.000 1.64 0.00 33.13 3.51
607 637 2.240667 CTGGAATCAGGGATGGTTCTGT 59.759 50.000 1.64 0.00 37.36 3.41
608 638 2.928334 CTGGAATCAGGGATGGTTCTG 58.072 52.381 1.64 0.00 37.36 3.02
631 661 3.093814 TGAGTGTAAGAACCAGCCGATA 58.906 45.455 0.00 0.00 0.00 2.92
633 663 1.334160 TGAGTGTAAGAACCAGCCGA 58.666 50.000 0.00 0.00 0.00 5.54
637 667 2.069273 CCGCTTGAGTGTAAGAACCAG 58.931 52.381 0.00 0.00 0.00 4.00
638 668 1.689813 TCCGCTTGAGTGTAAGAACCA 59.310 47.619 0.00 0.00 0.00 3.67
639 669 2.450609 TCCGCTTGAGTGTAAGAACC 57.549 50.000 0.00 0.00 0.00 3.62
652 795 1.263217 GTGTCGAACAAACATCCGCTT 59.737 47.619 0.00 0.00 0.00 4.68
673 816 4.948004 TGCCTCTAGAACTATTCGACTTCA 59.052 41.667 0.00 0.00 34.02 3.02
674 817 5.502153 TGCCTCTAGAACTATTCGACTTC 57.498 43.478 0.00 0.00 34.02 3.01
700 844 0.324368 GGGAACATGAACCCCCTTCC 60.324 60.000 16.96 9.75 40.19 3.46
725 869 6.012858 ACAAACCCCTTTTCTTCTTCCTTTTT 60.013 34.615 0.00 0.00 0.00 1.94
726 870 5.487488 ACAAACCCCTTTTCTTCTTCCTTTT 59.513 36.000 0.00 0.00 0.00 2.27
727 871 5.030147 ACAAACCCCTTTTCTTCTTCCTTT 58.970 37.500 0.00 0.00 0.00 3.11
728 872 4.405680 CACAAACCCCTTTTCTTCTTCCTT 59.594 41.667 0.00 0.00 0.00 3.36
729 873 3.960755 CACAAACCCCTTTTCTTCTTCCT 59.039 43.478 0.00 0.00 0.00 3.36
730 874 3.704566 ACACAAACCCCTTTTCTTCTTCC 59.295 43.478 0.00 0.00 0.00 3.46
731 875 5.221185 GGTACACAAACCCCTTTTCTTCTTC 60.221 44.000 0.00 0.00 33.02 2.87
732 876 4.647853 GGTACACAAACCCCTTTTCTTCTT 59.352 41.667 0.00 0.00 33.02 2.52
733 877 4.212716 GGTACACAAACCCCTTTTCTTCT 58.787 43.478 0.00 0.00 33.02 2.85
734 878 3.955551 TGGTACACAAACCCCTTTTCTTC 59.044 43.478 0.00 0.00 38.90 2.87
735 879 3.983821 TGGTACACAAACCCCTTTTCTT 58.016 40.909 0.00 0.00 38.90 2.52
736 880 3.673543 TGGTACACAAACCCCTTTTCT 57.326 42.857 0.00 0.00 38.90 2.52
764 908 1.275666 ATGCACCACACTACTGCCTA 58.724 50.000 0.00 0.00 0.00 3.93
765 909 0.401738 AATGCACCACACTACTGCCT 59.598 50.000 0.00 0.00 0.00 4.75
774 918 2.948147 GCCTATAACCCAATGCACCACA 60.948 50.000 0.00 0.00 0.00 4.17
797 944 0.178879 CCAGGGCCAGGATCCTCTAT 60.179 60.000 12.69 0.00 0.00 1.98
798 945 1.237163 CCAGGGCCAGGATCCTCTA 59.763 63.158 12.69 0.00 0.00 2.43
917 1064 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
1038 1188 4.750695 TTGGCCCTCCCCGATCCA 62.751 66.667 0.00 0.00 0.00 3.41
1179 1338 1.382695 GGAGTCCTCCCCGATGGAA 60.383 63.158 0.41 0.00 44.57 3.53
1212 1371 2.602267 TCGTCTTCCCCTTCGCCA 60.602 61.111 0.00 0.00 0.00 5.69
1224 1383 1.379309 GCTCTCCACCTCCTCGTCT 60.379 63.158 0.00 0.00 0.00 4.18
1426 1589 8.996024 TTGTGATCTCTAAATACGATGAAACA 57.004 30.769 0.00 0.00 0.00 2.83
1437 1600 8.424918 ACCGATGATAACTTGTGATCTCTAAAT 58.575 33.333 0.00 0.00 0.00 1.40
1491 1655 1.133450 TCCATACCCCTCTCTTCCTCG 60.133 57.143 0.00 0.00 0.00 4.63
1500 1664 5.066913 AGGATCAATTTTCCATACCCCTC 57.933 43.478 6.90 0.00 35.59 4.30
1501 1665 5.458595 GAAGGATCAATTTTCCATACCCCT 58.541 41.667 6.90 0.00 35.59 4.79
1504 1668 6.451064 AACGAAGGATCAATTTTCCATACC 57.549 37.500 6.90 0.00 35.59 2.73
1542 1706 1.371183 CTTGACAGCCCGTTCCTGA 59.629 57.895 0.00 0.00 34.47 3.86
1558 1722 1.741770 CTTGCCGGCGTAGAAGCTT 60.742 57.895 23.90 0.00 37.29 3.74
1573 1737 2.498167 CTGGTGAAGGACTTGGACTTG 58.502 52.381 0.00 0.00 0.00 3.16
1579 1743 0.671781 CGAGGCTGGTGAAGGACTTG 60.672 60.000 0.00 0.00 0.00 3.16
1783 1947 1.741032 GGAGTCGGAGTCGTCGTCT 60.741 63.158 6.74 0.00 37.69 4.18
1861 2025 2.355837 GTGTTCACGCTGAGCCGA 60.356 61.111 0.00 0.00 0.00 5.54
1862 2026 3.414700 GGTGTTCACGCTGAGCCG 61.415 66.667 0.00 0.00 0.00 5.52
2021 2185 8.940982 AGGAGTAAGTAGTAGTGACAGATCTAT 58.059 37.037 0.00 0.00 0.00 1.98
2066 2230 3.125829 ACTTACACATGCTCTTGCGATTG 59.874 43.478 0.00 0.00 43.34 2.67
2123 2288 1.221021 GGTCAACGGGATCCAGGAC 59.779 63.158 16.73 13.58 0.00 3.85
2124 2289 0.976073 GAGGTCAACGGGATCCAGGA 60.976 60.000 16.73 1.80 0.00 3.86
2125 2290 1.522569 GAGGTCAACGGGATCCAGG 59.477 63.158 16.73 8.62 0.00 4.45
2126 2291 1.141881 CGAGGTCAACGGGATCCAG 59.858 63.158 15.23 12.90 0.00 3.86
2401 2580 0.952010 CCACAAGGCAAAAGCATGGC 60.952 55.000 0.00 3.04 45.57 4.40
2403 2582 1.504359 CACCACAAGGCAAAAGCATG 58.496 50.000 0.00 0.00 39.06 4.06
2415 2594 1.346479 TTCGTCCCTTCCCACCACAA 61.346 55.000 0.00 0.00 0.00 3.33
2421 2600 0.608035 GCACATTTCGTCCCTTCCCA 60.608 55.000 0.00 0.00 0.00 4.37
2423 2602 0.322546 AGGCACATTTCGTCCCTTCC 60.323 55.000 0.00 0.00 0.00 3.46
2425 2604 1.202879 TCAAGGCACATTTCGTCCCTT 60.203 47.619 0.00 0.00 36.38 3.95
2426 2605 0.400213 TCAAGGCACATTTCGTCCCT 59.600 50.000 0.00 0.00 0.00 4.20
2428 2607 3.244976 CATTTCAAGGCACATTTCGTCC 58.755 45.455 0.00 0.00 0.00 4.79
2581 2786 3.425713 CGCACCACGCAGATTGCT 61.426 61.111 0.00 0.00 42.25 3.91
2696 2901 1.176838 GCTTGTTTATTTACGCGGCG 58.823 50.000 22.36 22.36 0.00 6.46
2700 2905 2.537639 AGCGGCTTGTTTATTTACGC 57.462 45.000 0.00 0.00 45.15 4.42
2714 2934 3.449227 GGGGGTAAAGCAAGCGGC 61.449 66.667 0.00 0.00 45.30 6.53
2731 2951 1.393539 GAATGGATCCACGTCGTGTTG 59.606 52.381 18.99 9.72 0.00 3.33
2751 2971 1.681264 GGAACAAGCCCCGGAATAATG 59.319 52.381 0.73 0.00 0.00 1.90
2768 2988 0.320771 GCCAAGAGAGACAAGCGGAA 60.321 55.000 0.00 0.00 0.00 4.30
2794 3019 2.835027 ACGTTTCACCCACTTCTCTTC 58.165 47.619 0.00 0.00 0.00 2.87
2795 3020 3.802675 GCTACGTTTCACCCACTTCTCTT 60.803 47.826 0.00 0.00 0.00 2.85
2796 3021 2.288886 GCTACGTTTCACCCACTTCTCT 60.289 50.000 0.00 0.00 0.00 3.10
2797 3022 2.067013 GCTACGTTTCACCCACTTCTC 58.933 52.381 0.00 0.00 0.00 2.87
2798 3023 1.414919 TGCTACGTTTCACCCACTTCT 59.585 47.619 0.00 0.00 0.00 2.85
2842 3073 1.518352 TCGCCGTGATTGTGATCCG 60.518 57.895 0.00 0.00 0.00 4.18
2848 3079 0.949105 GACCTTGTCGCCGTGATTGT 60.949 55.000 0.00 0.00 0.00 2.71
2903 3134 4.092237 CGACGGTGCTGTATGAAAACAATA 59.908 41.667 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.