Multiple sequence alignment - TraesCS5B01G276900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G276900 chr5B 100.000 6455 0 0 1 6455 462564331 462570785 0.000000e+00 11921
1 TraesCS5B01G276900 chr5B 81.702 3197 548 32 2582 5756 54863409 54866590 0.000000e+00 2628
2 TraesCS5B01G276900 chr5B 87.347 1059 107 13 904 1937 462638379 462639435 0.000000e+00 1188
3 TraesCS5B01G276900 chr5B 87.705 122 11 2 2107 2224 462639604 462639725 8.730000e-29 139
4 TraesCS5B01G276900 chr7B 91.761 3192 243 15 2582 5757 739993624 739990437 0.000000e+00 4420
5 TraesCS5B01G276900 chr7B 92.560 336 23 2 1 335 743424874 743425208 1.260000e-131 481
6 TraesCS5B01G276900 chrUn 91.336 3001 246 10 2582 5572 226730845 226733841 0.000000e+00 4089
7 TraesCS5B01G276900 chrUn 91.297 2999 251 7 2582 5572 274606841 274609837 0.000000e+00 4084
8 TraesCS5B01G276900 chrUn 80.982 163 22 6 5599 5755 385057656 385057815 3.160000e-23 121
9 TraesCS5B01G276900 chr3B 91.453 2960 249 4 2582 5539 803408293 803405336 0.000000e+00 4061
10 TraesCS5B01G276900 chr3B 92.647 340 23 2 1 339 705280082 705280420 7.520000e-134 488
11 TraesCS5B01G276900 chr3B 92.012 338 25 2 1 337 78303334 78303670 2.110000e-129 473
12 TraesCS5B01G276900 chr4A 88.265 3187 352 19 2582 5755 636370174 636373351 0.000000e+00 3794
13 TraesCS5B01G276900 chr4A 96.739 92 3 0 5664 5755 740085289 740085380 3.120000e-33 154
14 TraesCS5B01G276900 chr7A 87.856 3088 358 16 2582 5659 679037559 679034479 0.000000e+00 3609
15 TraesCS5B01G276900 chr7A 85.357 3196 438 24 2582 5755 3532391 3535578 0.000000e+00 3282
16 TraesCS5B01G276900 chr5A 86.142 3204 392 39 2582 5757 426900838 426897659 0.000000e+00 3410
17 TraesCS5B01G276900 chr5A 85.674 1068 99 19 904 1920 487261918 487262982 0.000000e+00 1075
18 TraesCS5B01G276900 chr2B 85.048 3197 446 26 2582 5755 761970012 761973199 0.000000e+00 3227
19 TraesCS5B01G276900 chr2B 93.114 334 20 3 1 332 543606174 543606506 2.710000e-133 486
20 TraesCS5B01G276900 chr2B 91.445 339 28 1 1 339 648657468 648657805 1.270000e-126 464
21 TraesCS5B01G276900 chr3A 84.729 3189 463 23 2582 5755 19682571 19685750 0.000000e+00 3169
22 TraesCS5B01G276900 chr3A 89.382 518 48 4 335 849 444448922 444448409 0.000000e+00 645
23 TraesCS5B01G276900 chr5D 92.204 1706 92 18 904 2581 385128768 385130460 0.000000e+00 2375
24 TraesCS5B01G276900 chr5D 88.462 1040 100 7 904 1926 385390996 385392032 0.000000e+00 1238
25 TraesCS5B01G276900 chr5D 90.395 708 52 8 5753 6455 385130447 385131143 0.000000e+00 917
26 TraesCS5B01G276900 chr5D 91.216 444 23 9 466 904 385128305 385128737 2.000000e-164 590
27 TraesCS5B01G276900 chr4B 90.368 353 28 6 1 349 466861403 466861053 5.900000e-125 459
28 TraesCS5B01G276900 chr4B 90.909 341 26 5 1 338 44656763 44657101 2.740000e-123 453
29 TraesCS5B01G276900 chr4B 89.859 355 29 6 1 353 88381095 88380746 3.550000e-122 449
30 TraesCS5B01G276900 chr1B 91.071 336 28 2 1 335 371720250 371719916 2.740000e-123 453
31 TraesCS5B01G276900 chr6A 87.306 386 24 11 440 824 603305270 603305631 1.000000e-112 418


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G276900 chr5B 462564331 462570785 6454 False 11921.0 11921 100.000000 1 6455 1 chr5B.!!$F2 6454
1 TraesCS5B01G276900 chr5B 54863409 54866590 3181 False 2628.0 2628 81.702000 2582 5756 1 chr5B.!!$F1 3174
2 TraesCS5B01G276900 chr5B 462638379 462639725 1346 False 663.5 1188 87.526000 904 2224 2 chr5B.!!$F3 1320
3 TraesCS5B01G276900 chr7B 739990437 739993624 3187 True 4420.0 4420 91.761000 2582 5757 1 chr7B.!!$R1 3175
4 TraesCS5B01G276900 chrUn 226730845 226733841 2996 False 4089.0 4089 91.336000 2582 5572 1 chrUn.!!$F1 2990
5 TraesCS5B01G276900 chrUn 274606841 274609837 2996 False 4084.0 4084 91.297000 2582 5572 1 chrUn.!!$F2 2990
6 TraesCS5B01G276900 chr3B 803405336 803408293 2957 True 4061.0 4061 91.453000 2582 5539 1 chr3B.!!$R1 2957
7 TraesCS5B01G276900 chr4A 636370174 636373351 3177 False 3794.0 3794 88.265000 2582 5755 1 chr4A.!!$F1 3173
8 TraesCS5B01G276900 chr7A 679034479 679037559 3080 True 3609.0 3609 87.856000 2582 5659 1 chr7A.!!$R1 3077
9 TraesCS5B01G276900 chr7A 3532391 3535578 3187 False 3282.0 3282 85.357000 2582 5755 1 chr7A.!!$F1 3173
10 TraesCS5B01G276900 chr5A 426897659 426900838 3179 True 3410.0 3410 86.142000 2582 5757 1 chr5A.!!$R1 3175
11 TraesCS5B01G276900 chr5A 487261918 487262982 1064 False 1075.0 1075 85.674000 904 1920 1 chr5A.!!$F1 1016
12 TraesCS5B01G276900 chr2B 761970012 761973199 3187 False 3227.0 3227 85.048000 2582 5755 1 chr2B.!!$F3 3173
13 TraesCS5B01G276900 chr3A 19682571 19685750 3179 False 3169.0 3169 84.729000 2582 5755 1 chr3A.!!$F1 3173
14 TraesCS5B01G276900 chr3A 444448409 444448922 513 True 645.0 645 89.382000 335 849 1 chr3A.!!$R1 514
15 TraesCS5B01G276900 chr5D 385128305 385131143 2838 False 1294.0 2375 91.271667 466 6455 3 chr5D.!!$F2 5989
16 TraesCS5B01G276900 chr5D 385390996 385392032 1036 False 1238.0 1238 88.462000 904 1926 1 chr5D.!!$F1 1022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.034863 GGCGGACAGGATGGGTAAAA 60.035 55.000 0.0 0.00 43.62 1.52 F
902 911 0.107410 GACCACCGCCCAATCATACA 60.107 55.000 0.0 0.00 0.00 2.29 F
1051 1109 1.135731 CTCCTCGTCGTCTGTGCTC 59.864 63.158 0.0 0.00 0.00 4.26 F
2084 2195 0.462789 AGGTCGTGGTTCTTGACGTT 59.537 50.000 0.0 0.00 36.91 3.99 F
2302 2474 0.179275 CGTTGCGTCGAGACATGTTG 60.179 55.000 0.0 0.00 0.00 3.33 F
2312 2484 0.313987 AGACATGTTGCGACGAGACA 59.686 50.000 0.0 2.24 0.00 3.41 F
2313 2485 1.067565 AGACATGTTGCGACGAGACAT 60.068 47.619 0.0 4.82 34.52 3.06 F
4222 4403 0.248843 CTGGTTGGAGAGGCAGACTC 59.751 60.000 0.0 0.00 46.98 3.36 F
4843 5026 0.325933 TGTTGGCAGAGTGGGATGAG 59.674 55.000 0.0 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 2069 0.033991 CTTGAGGACGAGGAGGAGGA 60.034 60.000 0.00 0.00 0.00 3.71 R
2061 2171 0.391597 TCAAGAACCACGACCTCACC 59.608 55.000 0.00 0.00 0.00 4.02 R
2290 2462 0.454452 CTCGTCGCAACATGTCTCGA 60.454 55.000 15.54 15.54 0.00 4.04 R
3708 3888 0.404426 AACCCCAACAGAGCCCTTAC 59.596 55.000 0.00 0.00 0.00 2.34 R
3847 4027 1.139853 AGGATGTTACAGCTAGCAGCC 59.860 52.381 18.83 7.11 43.77 4.85 R
3997 4178 1.255882 TGCGCATCCCAGAAATTTGT 58.744 45.000 5.66 0.00 0.00 2.83 R
4369 4550 2.954318 AGCCAGGTGATATTTGTGATGC 59.046 45.455 0.00 0.00 0.00 3.91 R
5433 5618 0.110486 ACTCCAGTTTCCGCACCATT 59.890 50.000 0.00 0.00 0.00 3.16 R
5952 6166 0.668535 AAGCCGCAACAAGAAACCTC 59.331 50.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.683334 GCTGTGTTGCCGGCGAAC 62.683 66.667 20.60 23.75 0.00 3.95
21 22 3.276091 CTGTGTTGCCGGCGAACA 61.276 61.111 28.84 28.84 0.00 3.18
22 23 2.824489 TGTGTTGCCGGCGAACAA 60.824 55.556 31.95 23.00 35.15 2.83
23 24 2.329678 CTGTGTTGCCGGCGAACAAA 62.330 55.000 31.95 27.99 35.15 2.83
24 25 1.226717 GTGTTGCCGGCGAACAAAA 60.227 52.632 31.95 16.27 35.15 2.44
25 26 1.226717 TGTTGCCGGCGAACAAAAC 60.227 52.632 29.77 23.61 30.35 2.43
26 27 1.065109 GTTGCCGGCGAACAAAACT 59.935 52.632 26.54 0.00 0.00 2.66
27 28 0.308376 GTTGCCGGCGAACAAAACTA 59.692 50.000 26.54 4.50 0.00 2.24
28 29 1.068816 GTTGCCGGCGAACAAAACTAT 60.069 47.619 26.54 0.00 0.00 2.12
29 30 1.240256 TGCCGGCGAACAAAACTATT 58.760 45.000 23.90 0.00 0.00 1.73
30 31 1.609555 TGCCGGCGAACAAAACTATTT 59.390 42.857 23.90 0.00 0.00 1.40
31 32 2.812591 TGCCGGCGAACAAAACTATTTA 59.187 40.909 23.90 0.00 0.00 1.40
32 33 3.440872 TGCCGGCGAACAAAACTATTTAT 59.559 39.130 23.90 0.00 0.00 1.40
33 34 4.082679 TGCCGGCGAACAAAACTATTTATT 60.083 37.500 23.90 0.00 0.00 1.40
34 35 4.860352 GCCGGCGAACAAAACTATTTATTT 59.140 37.500 12.58 0.00 0.00 1.40
35 36 5.346551 GCCGGCGAACAAAACTATTTATTTT 59.653 36.000 12.58 0.00 0.00 1.82
37 38 6.183360 CCGGCGAACAAAACTATTTATTTTGG 60.183 38.462 9.30 0.00 46.64 3.28
38 39 6.583050 CGGCGAACAAAACTATTTATTTTGGA 59.417 34.615 0.00 0.00 46.64 3.53
39 40 7.201316 CGGCGAACAAAACTATTTATTTTGGAG 60.201 37.037 0.00 6.40 46.64 3.86
40 41 7.062956 GGCGAACAAAACTATTTATTTTGGAGG 59.937 37.037 13.16 4.54 46.64 4.30
41 42 7.597369 GCGAACAAAACTATTTATTTTGGAGGT 59.403 33.333 13.16 0.00 46.64 3.85
42 43 9.124807 CGAACAAAACTATTTATTTTGGAGGTC 57.875 33.333 13.16 5.70 46.64 3.85
43 44 9.124807 GAACAAAACTATTTATTTTGGAGGTCG 57.875 33.333 13.16 0.00 46.64 4.79
44 45 7.599171 ACAAAACTATTTATTTTGGAGGTCGG 58.401 34.615 13.16 0.00 46.64 4.79
45 46 5.830000 AACTATTTATTTTGGAGGTCGGC 57.170 39.130 0.00 0.00 0.00 5.54
46 47 5.112129 ACTATTTATTTTGGAGGTCGGCT 57.888 39.130 0.00 0.00 0.00 5.52
47 48 4.881850 ACTATTTATTTTGGAGGTCGGCTG 59.118 41.667 0.00 0.00 0.00 4.85
48 49 2.871096 TTATTTTGGAGGTCGGCTGT 57.129 45.000 0.00 0.00 0.00 4.40
49 50 2.107950 TATTTTGGAGGTCGGCTGTG 57.892 50.000 0.00 0.00 0.00 3.66
50 51 0.110486 ATTTTGGAGGTCGGCTGTGT 59.890 50.000 0.00 0.00 0.00 3.72
51 52 0.106918 TTTTGGAGGTCGGCTGTGTT 60.107 50.000 0.00 0.00 0.00 3.32
52 53 0.817634 TTTGGAGGTCGGCTGTGTTG 60.818 55.000 0.00 0.00 0.00 3.33
53 54 3.050275 GGAGGTCGGCTGTGTTGC 61.050 66.667 0.00 0.00 0.00 4.17
54 55 2.031163 GAGGTCGGCTGTGTTGCT 59.969 61.111 0.00 0.00 0.00 3.91
55 56 2.281070 AGGTCGGCTGTGTTGCTG 60.281 61.111 0.00 0.00 40.46 4.41
56 57 3.357079 GGTCGGCTGTGTTGCTGG 61.357 66.667 0.00 0.00 39.62 4.85
57 58 4.030452 GTCGGCTGTGTTGCTGGC 62.030 66.667 0.00 0.00 39.62 4.85
60 61 3.982241 GGCTGTGTTGCTGGCCAC 61.982 66.667 0.00 0.00 43.59 5.01
61 62 2.908940 GCTGTGTTGCTGGCCACT 60.909 61.111 0.00 0.00 32.76 4.00
62 63 3.036577 CTGTGTTGCTGGCCACTG 58.963 61.111 0.00 0.00 32.76 3.66
63 64 2.519063 TGTGTTGCTGGCCACTGG 60.519 61.111 0.00 0.00 32.76 4.00
81 82 4.680237 CTGTGTTGCCGGCGAGGA 62.680 66.667 23.90 6.59 45.00 3.71
82 83 4.980805 TGTGTTGCCGGCGAGGAC 62.981 66.667 23.90 19.29 45.00 3.85
88 89 4.849329 GCCGGCGAGGACGTGTAG 62.849 72.222 12.58 0.00 45.00 2.74
89 90 4.189188 CCGGCGAGGACGTGTAGG 62.189 72.222 9.30 0.00 45.00 3.18
90 91 4.849329 CGGCGAGGACGTGTAGGC 62.849 72.222 0.00 0.00 41.98 3.93
96 97 4.814294 GGACGTGTAGGCCGCTGG 62.814 72.222 0.00 0.00 38.99 4.85
106 107 3.037833 GCCGCTGGCTTTTGTTGC 61.038 61.111 11.61 0.00 46.69 4.17
113 114 4.279043 GCTTTTGTTGCCGGGCGT 62.279 61.111 15.40 0.00 0.00 5.68
114 115 2.354539 CTTTTGTTGCCGGGCGTG 60.355 61.111 15.40 0.00 0.00 5.34
115 116 2.829003 TTTTGTTGCCGGGCGTGA 60.829 55.556 15.40 0.00 0.00 4.35
116 117 2.343163 CTTTTGTTGCCGGGCGTGAA 62.343 55.000 15.40 3.35 0.00 3.18
117 118 2.615262 TTTTGTTGCCGGGCGTGAAC 62.615 55.000 15.40 13.67 0.00 3.18
118 119 4.555709 TGTTGCCGGGCGTGAACT 62.556 61.111 15.40 0.00 0.00 3.01
119 120 2.357760 GTTGCCGGGCGTGAACTA 60.358 61.111 15.40 0.00 0.00 2.24
120 121 2.047655 TTGCCGGGCGTGAACTAG 60.048 61.111 15.40 0.00 0.00 2.57
121 122 3.599285 TTGCCGGGCGTGAACTAGG 62.599 63.158 15.40 0.00 0.00 3.02
122 123 4.832608 GCCGGGCGTGAACTAGGG 62.833 72.222 1.81 0.00 0.00 3.53
123 124 4.832608 CCGGGCGTGAACTAGGGC 62.833 72.222 0.00 0.00 38.84 5.19
127 128 4.452733 GCGTGAACTAGGGCCGCT 62.453 66.667 0.00 0.00 41.06 5.52
128 129 2.509336 CGTGAACTAGGGCCGCTG 60.509 66.667 0.00 0.00 0.00 5.18
129 130 2.125106 GTGAACTAGGGCCGCTGG 60.125 66.667 0.00 0.00 0.00 4.85
140 141 4.131376 CCGCTGGCATGAACTAGG 57.869 61.111 0.00 0.00 0.00 3.02
141 142 2.182842 CCGCTGGCATGAACTAGGC 61.183 63.158 0.00 0.00 34.76 3.93
146 147 2.902343 GCATGAACTAGGCCGGCC 60.902 66.667 39.29 39.29 0.00 6.13
147 148 2.588877 CATGAACTAGGCCGGCCG 60.589 66.667 38.88 28.09 41.95 6.13
148 149 4.547367 ATGAACTAGGCCGGCCGC 62.547 66.667 38.88 25.46 41.95 6.53
157 158 3.887868 GCCGGCCGCTGGTATTTG 61.888 66.667 22.85 3.31 31.34 2.32
158 159 2.124901 CCGGCCGCTGGTATTTGA 60.125 61.111 22.85 0.00 0.00 2.69
159 160 1.747367 CCGGCCGCTGGTATTTGAA 60.747 57.895 22.85 0.00 0.00 2.69
160 161 1.309499 CCGGCCGCTGGTATTTGAAA 61.309 55.000 22.85 0.00 0.00 2.69
161 162 0.179174 CGGCCGCTGGTATTTGAAAC 60.179 55.000 14.67 0.00 0.00 2.78
162 163 0.179174 GGCCGCTGGTATTTGAAACG 60.179 55.000 0.00 0.00 0.00 3.60
163 164 0.519961 GCCGCTGGTATTTGAAACGT 59.480 50.000 0.00 0.00 0.00 3.99
164 165 1.068816 GCCGCTGGTATTTGAAACGTT 60.069 47.619 0.00 0.00 0.00 3.99
165 166 2.846693 CCGCTGGTATTTGAAACGTTC 58.153 47.619 0.00 0.00 0.00 3.95
166 167 2.482721 CCGCTGGTATTTGAAACGTTCT 59.517 45.455 0.00 0.00 0.00 3.01
167 168 3.058501 CCGCTGGTATTTGAAACGTTCTT 60.059 43.478 0.00 0.00 0.00 2.52
168 169 3.906008 CGCTGGTATTTGAAACGTTCTTG 59.094 43.478 0.00 0.00 0.00 3.02
169 170 4.553938 CGCTGGTATTTGAAACGTTCTTGT 60.554 41.667 0.00 0.00 0.00 3.16
170 171 5.278604 GCTGGTATTTGAAACGTTCTTGTT 58.721 37.500 0.00 0.00 0.00 2.83
171 172 5.746721 GCTGGTATTTGAAACGTTCTTGTTT 59.253 36.000 0.00 0.00 44.36 2.83
172 173 6.291585 GCTGGTATTTGAAACGTTCTTGTTTG 60.292 38.462 0.00 0.00 41.89 2.93
173 174 6.853720 TGGTATTTGAAACGTTCTTGTTTGA 58.146 32.000 0.00 0.00 41.89 2.69
174 175 7.313646 TGGTATTTGAAACGTTCTTGTTTGAA 58.686 30.769 0.00 0.00 41.89 2.69
175 176 7.813148 TGGTATTTGAAACGTTCTTGTTTGAAA 59.187 29.630 0.00 6.48 44.74 2.69
176 177 8.648968 GGTATTTGAAACGTTCTTGTTTGAAAA 58.351 29.630 0.00 4.46 44.17 2.29
179 180 7.875316 TTGAAACGTTCTTGTTTGAAAATGA 57.125 28.000 0.00 0.00 41.89 2.57
180 181 7.875316 TGAAACGTTCTTGTTTGAAAATGAA 57.125 28.000 0.00 0.00 41.89 2.57
181 182 7.948137 TGAAACGTTCTTGTTTGAAAATGAAG 58.052 30.769 0.00 0.00 41.89 3.02
182 183 6.885735 AACGTTCTTGTTTGAAAATGAAGG 57.114 33.333 0.00 0.00 0.00 3.46
183 184 4.803613 ACGTTCTTGTTTGAAAATGAAGGC 59.196 37.500 0.00 0.00 0.00 4.35
184 185 4.085619 CGTTCTTGTTTGAAAATGAAGGCG 60.086 41.667 0.00 0.00 0.00 5.52
185 186 3.976169 TCTTGTTTGAAAATGAAGGCGG 58.024 40.909 0.00 0.00 0.00 6.13
186 187 3.634448 TCTTGTTTGAAAATGAAGGCGGA 59.366 39.130 0.00 0.00 0.00 5.54
187 188 3.363341 TGTTTGAAAATGAAGGCGGAC 57.637 42.857 0.00 0.00 0.00 4.79
188 189 2.690497 TGTTTGAAAATGAAGGCGGACA 59.310 40.909 0.00 0.00 0.00 4.02
189 190 3.243367 TGTTTGAAAATGAAGGCGGACAG 60.243 43.478 0.00 0.00 0.00 3.51
190 191 1.533625 TGAAAATGAAGGCGGACAGG 58.466 50.000 0.00 0.00 0.00 4.00
191 192 1.073125 TGAAAATGAAGGCGGACAGGA 59.927 47.619 0.00 0.00 0.00 3.86
192 193 2.290896 TGAAAATGAAGGCGGACAGGAT 60.291 45.455 0.00 0.00 0.00 3.24
193 194 1.755179 AAATGAAGGCGGACAGGATG 58.245 50.000 0.00 0.00 46.00 3.51
194 195 0.107017 AATGAAGGCGGACAGGATGG 60.107 55.000 0.00 0.00 43.62 3.51
195 196 1.987807 ATGAAGGCGGACAGGATGGG 61.988 60.000 0.00 0.00 43.62 4.00
196 197 2.610859 AAGGCGGACAGGATGGGT 60.611 61.111 0.00 0.00 43.62 4.51
197 198 1.306654 AAGGCGGACAGGATGGGTA 60.307 57.895 0.00 0.00 43.62 3.69
198 199 0.912487 AAGGCGGACAGGATGGGTAA 60.912 55.000 0.00 0.00 43.62 2.85
199 200 0.912487 AGGCGGACAGGATGGGTAAA 60.912 55.000 0.00 0.00 43.62 2.01
200 201 0.034863 GGCGGACAGGATGGGTAAAA 60.035 55.000 0.00 0.00 43.62 1.52
201 202 1.379527 GCGGACAGGATGGGTAAAAG 58.620 55.000 0.00 0.00 43.62 2.27
202 203 2.017113 GCGGACAGGATGGGTAAAAGG 61.017 57.143 0.00 0.00 43.62 3.11
203 204 1.557832 CGGACAGGATGGGTAAAAGGA 59.442 52.381 0.00 0.00 43.62 3.36
204 205 2.172717 CGGACAGGATGGGTAAAAGGAT 59.827 50.000 0.00 0.00 43.62 3.24
205 206 3.555966 GGACAGGATGGGTAAAAGGATG 58.444 50.000 0.00 0.00 43.62 3.51
206 207 2.952310 GACAGGATGGGTAAAAGGATGC 59.048 50.000 0.00 0.00 43.62 3.91
207 208 1.949525 CAGGATGGGTAAAAGGATGCG 59.050 52.381 0.00 0.00 0.00 4.73
208 209 1.133792 AGGATGGGTAAAAGGATGCGG 60.134 52.381 0.00 0.00 0.00 5.69
209 210 0.668535 GATGGGTAAAAGGATGCGGC 59.331 55.000 0.00 0.00 0.00 6.53
210 211 0.755327 ATGGGTAAAAGGATGCGGCC 60.755 55.000 0.00 0.00 0.00 6.13
211 212 2.478033 GGGTAAAAGGATGCGGCCG 61.478 63.158 24.05 24.05 0.00 6.13
212 213 2.407616 GTAAAAGGATGCGGCCGC 59.592 61.111 42.35 42.35 42.35 6.53
213 214 3.199190 TAAAAGGATGCGGCCGCG 61.199 61.111 41.73 12.29 45.51 6.46
245 246 3.716195 CCACCGCATCCCAGGACA 61.716 66.667 0.00 0.00 0.00 4.02
246 247 2.124983 CACCGCATCCCAGGACAG 60.125 66.667 0.00 0.00 0.00 3.51
247 248 3.402681 ACCGCATCCCAGGACAGG 61.403 66.667 0.00 0.00 0.00 4.00
248 249 4.864334 CCGCATCCCAGGACAGGC 62.864 72.222 0.00 0.00 0.00 4.85
249 250 4.864334 CGCATCCCAGGACAGGCC 62.864 72.222 0.00 0.00 0.00 5.19
250 251 4.512914 GCATCCCAGGACAGGCCC 62.513 72.222 0.00 0.00 37.37 5.80
251 252 4.181010 CATCCCAGGACAGGCCCG 62.181 72.222 0.00 0.00 37.37 6.13
256 257 4.394712 CAGGACAGGCCCGGACAC 62.395 72.222 0.73 0.00 37.37 3.67
259 260 4.736896 GACAGGCCCGGACACGAC 62.737 72.222 0.73 0.00 44.60 4.34
265 266 4.157120 CCCGGACACGACCCCATC 62.157 72.222 0.73 0.00 44.60 3.51
273 274 3.925090 CGACCCCATCGCCCTACC 61.925 72.222 0.00 0.00 45.52 3.18
274 275 3.557290 GACCCCATCGCCCTACCC 61.557 72.222 0.00 0.00 0.00 3.69
275 276 4.424867 ACCCCATCGCCCTACCCA 62.425 66.667 0.00 0.00 0.00 4.51
276 277 3.093835 CCCCATCGCCCTACCCAA 61.094 66.667 0.00 0.00 0.00 4.12
277 278 2.685534 CCCCATCGCCCTACCCAAA 61.686 63.158 0.00 0.00 0.00 3.28
278 279 1.453197 CCCATCGCCCTACCCAAAC 60.453 63.158 0.00 0.00 0.00 2.93
279 280 1.817941 CCATCGCCCTACCCAAACG 60.818 63.158 0.00 0.00 0.00 3.60
280 281 1.817941 CATCGCCCTACCCAAACGG 60.818 63.158 0.00 0.00 37.81 4.44
281 282 1.991167 ATCGCCCTACCCAAACGGA 60.991 57.895 0.00 0.00 34.64 4.69
282 283 2.248086 ATCGCCCTACCCAAACGGAC 62.248 60.000 0.00 0.00 34.64 4.79
283 284 2.751688 GCCCTACCCAAACGGACA 59.248 61.111 0.00 0.00 34.64 4.02
284 285 1.376812 GCCCTACCCAAACGGACAG 60.377 63.158 0.00 0.00 34.64 3.51
285 286 1.833787 GCCCTACCCAAACGGACAGA 61.834 60.000 0.00 0.00 34.64 3.41
286 287 0.688487 CCCTACCCAAACGGACAGAA 59.312 55.000 0.00 0.00 34.64 3.02
287 288 1.280998 CCCTACCCAAACGGACAGAAT 59.719 52.381 0.00 0.00 34.64 2.40
288 289 2.290705 CCCTACCCAAACGGACAGAATT 60.291 50.000 0.00 0.00 34.64 2.17
289 290 3.007635 CCTACCCAAACGGACAGAATTC 58.992 50.000 0.00 0.00 34.64 2.17
290 291 1.519408 ACCCAAACGGACAGAATTCG 58.481 50.000 0.00 0.00 34.64 3.34
291 292 0.802494 CCCAAACGGACAGAATTCGG 59.198 55.000 3.87 3.87 0.00 4.30
292 293 1.609580 CCCAAACGGACAGAATTCGGA 60.610 52.381 12.79 0.00 0.00 4.55
293 294 2.356135 CCAAACGGACAGAATTCGGAT 58.644 47.619 12.79 0.00 0.00 4.18
294 295 3.527533 CCAAACGGACAGAATTCGGATA 58.472 45.455 12.79 0.00 0.00 2.59
295 296 3.936453 CCAAACGGACAGAATTCGGATAA 59.064 43.478 12.79 0.00 0.00 1.75
296 297 4.393680 CCAAACGGACAGAATTCGGATAAA 59.606 41.667 12.79 0.00 0.00 1.40
297 298 5.106475 CCAAACGGACAGAATTCGGATAAAA 60.106 40.000 12.79 0.00 0.00 1.52
298 299 5.541098 AACGGACAGAATTCGGATAAAAC 57.459 39.130 12.79 0.00 0.00 2.43
299 300 3.615496 ACGGACAGAATTCGGATAAAACG 59.385 43.478 12.79 8.98 0.00 3.60
300 301 3.000925 CGGACAGAATTCGGATAAAACGG 59.999 47.826 12.79 0.00 0.00 4.44
301 302 4.186159 GGACAGAATTCGGATAAAACGGA 58.814 43.478 12.79 0.00 0.00 4.69
302 303 4.033702 GGACAGAATTCGGATAAAACGGAC 59.966 45.833 12.79 0.00 0.00 4.79
303 304 3.615496 ACAGAATTCGGATAAAACGGACG 59.385 43.478 12.79 0.00 0.00 4.79
304 305 3.615496 CAGAATTCGGATAAAACGGACGT 59.385 43.478 0.00 0.00 0.00 4.34
305 306 3.861689 AGAATTCGGATAAAACGGACGTC 59.138 43.478 7.13 7.13 0.00 4.34
306 307 1.994916 TTCGGATAAAACGGACGTCC 58.005 50.000 25.28 25.28 0.00 4.79
316 317 2.357881 GGACGTCCGTTTGGGGTC 60.358 66.667 20.85 0.00 37.97 4.46
317 318 2.735857 GACGTCCGTTTGGGGTCG 60.736 66.667 3.51 0.00 38.68 4.79
318 319 3.504524 GACGTCCGTTTGGGGTCGT 62.505 63.158 3.51 3.71 44.56 4.34
319 320 3.039588 CGTCCGTTTGGGGTCGTG 61.040 66.667 0.00 0.00 36.01 4.35
320 321 3.351416 GTCCGTTTGGGGTCGTGC 61.351 66.667 0.00 0.00 36.01 5.34
321 322 4.973055 TCCGTTTGGGGTCGTGCG 62.973 66.667 0.00 0.00 36.01 5.34
324 325 3.656045 GTTTGGGGTCGTGCGGTG 61.656 66.667 0.00 0.00 0.00 4.94
325 326 4.939368 TTTGGGGTCGTGCGGTGG 62.939 66.667 0.00 0.00 0.00 4.61
329 330 4.309950 GGGTCGTGCGGTGGAGTT 62.310 66.667 0.00 0.00 0.00 3.01
330 331 3.041940 GGTCGTGCGGTGGAGTTG 61.042 66.667 0.00 0.00 0.00 3.16
331 332 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
332 333 4.980805 TCGTGCGGTGGAGTTGGC 62.981 66.667 0.00 0.00 0.00 4.52
355 356 2.401766 GGGCGTTCTCACATGGCAG 61.402 63.158 0.00 0.00 0.00 4.85
356 357 1.672356 GGCGTTCTCACATGGCAGT 60.672 57.895 0.00 0.00 0.00 4.40
370 371 2.582052 TGGCAGTTTCCACCTAGTTTG 58.418 47.619 0.00 0.00 0.00 2.93
380 381 1.526887 CACCTAGTTTGTGACACGCTG 59.473 52.381 0.22 0.00 35.74 5.18
381 382 0.512952 CCTAGTTTGTGACACGCTGC 59.487 55.000 0.22 0.00 0.00 5.25
394 395 2.185608 GCTGCGGACCTCCTTCTC 59.814 66.667 0.00 0.00 0.00 2.87
395 396 2.896443 CTGCGGACCTCCTTCTCC 59.104 66.667 0.00 0.00 0.00 3.71
396 397 2.683933 TGCGGACCTCCTTCTCCC 60.684 66.667 0.00 0.00 0.00 4.30
398 399 3.148279 CGGACCTCCTTCTCCCCG 61.148 72.222 0.00 0.00 0.00 5.73
399 400 2.363361 GGACCTCCTTCTCCCCGA 59.637 66.667 0.00 0.00 0.00 5.14
400 401 1.305887 GGACCTCCTTCTCCCCGAA 60.306 63.158 0.00 0.00 0.00 4.30
401 402 1.615165 GGACCTCCTTCTCCCCGAAC 61.615 65.000 0.00 0.00 0.00 3.95
413 417 1.626321 TCCCCGAACAGCTTGTAATCA 59.374 47.619 0.00 0.00 0.00 2.57
431 435 3.031417 ATGCACCCAGGCTCGTACC 62.031 63.158 0.00 0.00 34.04 3.34
442 446 1.689273 GGCTCGTACCCTCTTCATGAT 59.311 52.381 0.00 0.00 0.00 2.45
450 454 5.508153 CGTACCCTCTTCATGATAGAACTGG 60.508 48.000 0.00 6.31 0.00 4.00
463 467 9.551734 CATGATAGAACTGGTATTTCTCATTGA 57.448 33.333 0.00 0.00 34.99 2.57
477 481 3.903714 TCTCATTGACTCTCTTGGGTTCA 59.096 43.478 0.00 0.00 0.00 3.18
513 517 1.827789 CCCACCACACCCACAACAG 60.828 63.158 0.00 0.00 0.00 3.16
529 533 6.655003 CCCACAACAGAGTAATACATTCAAGT 59.345 38.462 0.00 0.00 0.00 3.16
560 568 8.596781 TCTCTTCTGGTAGAGCTAGTATTTTT 57.403 34.615 0.00 0.00 41.18 1.94
578 586 7.881232 AGTATTTTTACTGACCAAATCCTTCGA 59.119 33.333 0.00 0.00 0.00 3.71
581 589 1.337823 ACTGACCAAATCCTTCGACCG 60.338 52.381 0.00 0.00 0.00 4.79
707 716 1.739562 GCGAACAGACTGGGCAGAG 60.740 63.158 7.51 0.00 0.00 3.35
710 719 0.952984 GAACAGACTGGGCAGAGTGC 60.953 60.000 7.51 0.00 44.08 4.40
718 727 4.008933 GGCAGAGTGCGTCCACCT 62.009 66.667 0.00 0.00 46.21 4.00
730 739 2.690881 CCACCTCCATCCCCCGAA 60.691 66.667 0.00 0.00 0.00 4.30
731 740 2.305607 CCACCTCCATCCCCCGAAA 61.306 63.158 0.00 0.00 0.00 3.46
752 761 6.630443 CGAAAATCAATACTGAGCTTATGTGC 59.370 38.462 0.00 0.00 34.23 4.57
777 786 3.286751 TTGTGAGCAAGCCGCCAC 61.287 61.111 9.14 9.14 44.04 5.01
798 807 1.141053 AGGAAGTGCTTCAGTTTCGGT 59.859 47.619 13.16 0.00 41.20 4.69
805 814 1.464997 GCTTCAGTTTCGGTGGACATC 59.535 52.381 0.00 0.00 0.00 3.06
901 910 1.157870 CGACCACCGCCCAATCATAC 61.158 60.000 0.00 0.00 0.00 2.39
902 911 0.107410 GACCACCGCCCAATCATACA 60.107 55.000 0.00 0.00 0.00 2.29
935 980 7.592885 ACAAAGACCACTTTACTAGTACTCA 57.407 36.000 0.91 0.00 43.41 3.41
996 1041 3.428746 TCGATCTTTCTCAGTAGCAGC 57.571 47.619 0.00 0.00 0.00 5.25
1051 1109 1.135731 CTCCTCGTCGTCTGTGCTC 59.864 63.158 0.00 0.00 0.00 4.26
1091 1149 1.198759 ACGGTGCAGGTATGGTCCTT 61.199 55.000 0.00 0.00 35.37 3.36
1231 1289 3.839432 CGCGGGAGGAGGAGGAAC 61.839 72.222 0.00 0.00 0.00 3.62
1261 1319 3.932580 CTGGCCTTGTGCTACGCGA 62.933 63.158 15.93 0.00 40.92 5.87
1326 1384 3.056328 GGGAACTTGACGCTGGCC 61.056 66.667 0.00 0.00 0.00 5.36
1394 1452 4.487412 GTACACGGACTCGGCGGG 62.487 72.222 4.58 4.58 41.39 6.13
1395 1453 4.720902 TACACGGACTCGGCGGGA 62.721 66.667 16.65 0.00 41.39 5.14
1516 1574 2.630317 CGCTCAATCGGCTCATGC 59.370 61.111 0.00 0.00 38.76 4.06
1518 1576 1.647629 GCTCAATCGGCTCATGCAG 59.352 57.895 0.00 0.00 41.91 4.41
1665 1729 4.400961 GACTGCCGCCTCTGCCTT 62.401 66.667 0.00 0.00 0.00 4.35
1680 1744 1.153568 CCTTCAGAGAATCGCCGCA 60.154 57.895 0.00 0.00 42.67 5.69
1703 1770 2.265683 GTTGCCCGTGTAAGTAGTAGC 58.734 52.381 0.00 0.00 0.00 3.58
1778 1858 1.445410 GCGGCGTATGACTGACACA 60.445 57.895 9.37 0.00 0.00 3.72
1904 2008 2.528564 CCCAACACAACCAGGATCATT 58.471 47.619 0.00 0.00 0.00 2.57
1914 2018 2.513666 GGATCATTGTGGCGCCGA 60.514 61.111 23.90 13.13 0.00 5.54
1966 2070 2.486966 GCAACCTGCAGCGGATTC 59.513 61.111 8.66 0.00 44.26 2.52
1967 2071 3.056313 GCAACCTGCAGCGGATTCC 62.056 63.158 8.66 0.00 44.26 3.01
2007 2111 8.936864 CAAGAGGTTAGTTAAATGTGAACTAGG 58.063 37.037 0.00 0.00 39.80 3.02
2008 2112 8.431910 AGAGGTTAGTTAAATGTGAACTAGGA 57.568 34.615 0.00 0.00 39.80 2.94
2010 2114 9.099454 GAGGTTAGTTAAATGTGAACTAGGATG 57.901 37.037 0.00 0.00 39.80 3.51
2020 2124 7.741027 ATGTGAACTAGGATGCATTAATCAG 57.259 36.000 0.00 0.00 0.00 2.90
2058 2168 2.198827 TGGACATGGTGATTGGTGAC 57.801 50.000 0.00 0.00 0.00 3.67
2061 2171 2.086869 GACATGGTGATTGGTGACTGG 58.913 52.381 0.00 0.00 0.00 4.00
2075 2185 1.755393 GACTGGGTGAGGTCGTGGTT 61.755 60.000 0.00 0.00 0.00 3.67
2084 2195 0.462789 AGGTCGTGGTTCTTGACGTT 59.537 50.000 0.00 0.00 36.91 3.99
2234 2391 7.116736 ACGTAGAATGGAGAATTACCCAAAAT 58.883 34.615 2.79 0.00 35.85 1.82
2244 2401 8.949177 GGAGAATTACCCAAAATAGAAACGTAA 58.051 33.333 0.00 0.00 0.00 3.18
2262 2419 3.914364 CGTAAAATGGAGAAGCTTTGCAC 59.086 43.478 0.00 0.00 0.00 4.57
2265 2422 1.446907 ATGGAGAAGCTTTGCACGAG 58.553 50.000 0.00 0.00 0.00 4.18
2290 2462 1.561717 TAATTGCTCGTGCGTTGCGT 61.562 50.000 4.84 0.00 43.34 5.24
2300 2472 2.372690 GCGTTGCGTCGAGACATGT 61.373 57.895 0.00 0.00 0.00 3.21
2301 2473 1.886861 GCGTTGCGTCGAGACATGTT 61.887 55.000 0.00 0.00 0.00 2.71
2302 2474 0.179275 CGTTGCGTCGAGACATGTTG 60.179 55.000 0.00 0.00 0.00 3.33
2303 2475 0.451135 GTTGCGTCGAGACATGTTGC 60.451 55.000 0.00 0.00 0.00 4.17
2304 2476 1.885814 TTGCGTCGAGACATGTTGCG 61.886 55.000 13.18 13.18 0.00 4.85
2305 2477 2.086426 GCGTCGAGACATGTTGCGA 61.086 57.895 16.73 16.73 0.00 5.10
2306 2478 1.696644 CGTCGAGACATGTTGCGAC 59.303 57.895 29.25 29.25 46.78 5.19
2307 2479 1.696644 GTCGAGACATGTTGCGACG 59.303 57.895 27.08 16.73 42.71 5.12
2308 2480 0.728129 GTCGAGACATGTTGCGACGA 60.728 55.000 27.08 18.22 42.71 4.20
2309 2481 0.454452 TCGAGACATGTTGCGACGAG 60.454 55.000 16.73 0.00 0.00 4.18
2310 2482 0.454452 CGAGACATGTTGCGACGAGA 60.454 55.000 13.91 0.00 0.00 4.04
2311 2483 0.985549 GAGACATGTTGCGACGAGAC 59.014 55.000 0.00 0.00 0.00 3.36
2312 2484 0.313987 AGACATGTTGCGACGAGACA 59.686 50.000 0.00 2.24 0.00 3.41
2313 2485 1.067565 AGACATGTTGCGACGAGACAT 60.068 47.619 0.00 4.82 34.52 3.06
2387 2559 2.224549 CGGTTCGTTGTGCCTATTTCAA 59.775 45.455 0.00 0.00 0.00 2.69
2388 2560 3.119990 CGGTTCGTTGTGCCTATTTCAAT 60.120 43.478 0.00 0.00 0.00 2.57
2453 2625 3.189495 TGTGCTACTCTCTCTGTTTCGAG 59.811 47.826 0.00 0.00 0.00 4.04
2456 2628 3.623960 GCTACTCTCTCTGTTTCGAGCTA 59.376 47.826 0.00 0.00 0.00 3.32
2459 2631 6.347402 GCTACTCTCTCTGTTTCGAGCTATAG 60.347 46.154 0.00 0.00 0.00 1.31
2464 2636 6.993308 TCTCTCTGTTTCGAGCTATAGTGTAT 59.007 38.462 0.84 0.00 0.00 2.29
2465 2637 8.148999 TCTCTCTGTTTCGAGCTATAGTGTATA 58.851 37.037 0.84 0.00 0.00 1.47
2466 2638 8.850007 TCTCTGTTTCGAGCTATAGTGTATAT 57.150 34.615 0.84 0.00 0.00 0.86
2467 2639 9.286170 TCTCTGTTTCGAGCTATAGTGTATATT 57.714 33.333 0.84 0.00 0.00 1.28
2468 2640 9.335891 CTCTGTTTCGAGCTATAGTGTATATTG 57.664 37.037 0.84 0.00 0.00 1.90
2469 2641 8.297426 TCTGTTTCGAGCTATAGTGTATATTGG 58.703 37.037 0.84 0.00 0.00 3.16
2470 2642 8.173542 TGTTTCGAGCTATAGTGTATATTGGA 57.826 34.615 0.84 0.00 0.00 3.53
2659 2834 3.518705 TGGACTGCCAAATGCCATTTTAT 59.481 39.130 0.00 0.00 42.49 1.40
2758 2934 2.099592 TGAGCAAAACAGGCAGAAACAG 59.900 45.455 0.00 0.00 0.00 3.16
2815 2991 6.026186 TCTTTCTGAATCTAACCCTCCTTCT 58.974 40.000 0.00 0.00 0.00 2.85
2837 3013 9.606631 CTTCTCCTAACACTAATAGCAGAATTT 57.393 33.333 0.00 0.00 29.28 1.82
2914 3092 2.096248 CAGAGGTCCAGAGACAGGTAC 58.904 57.143 0.00 0.00 45.48 3.34
3028 3206 5.297547 TCAGGTAATGTGACTGAACAGAAC 58.702 41.667 8.87 7.05 38.22 3.01
3038 3216 6.255670 TGTGACTGAACAGAACGATATTATGC 59.744 38.462 8.87 0.00 0.00 3.14
3040 3218 6.986231 TGACTGAACAGAACGATATTATGCAT 59.014 34.615 3.79 3.79 0.00 3.96
3085 3263 8.716646 AAAACTTGTTTGGTTTCCAAGATAAG 57.283 30.769 5.69 14.04 44.84 1.73
3113 3291 4.692625 ACATCGACCTGAAAGATGACTTTG 59.307 41.667 11.05 0.00 44.97 2.77
3134 3312 2.122768 GGGGAGATGATGAGAAGGTGT 58.877 52.381 0.00 0.00 0.00 4.16
3138 3316 4.837860 GGGAGATGATGAGAAGGTGTCTAT 59.162 45.833 0.00 0.00 36.41 1.98
3222 3400 1.767681 CTCTTATGCAGAAGGAGCCCT 59.232 52.381 20.34 0.00 33.87 5.19
3400 3579 8.845413 ATGCTAGCAAGATAGAGAAATTTAGG 57.155 34.615 23.54 0.00 0.00 2.69
3469 3649 3.222603 CACTAATAGGTTTGGCCCCATC 58.777 50.000 0.00 0.00 38.26 3.51
3513 3693 4.373156 ACCAGACTGCCTTCATAAAAGT 57.627 40.909 0.00 0.00 0.00 2.66
3519 3699 6.373774 CAGACTGCCTTCATAAAAGTCAGATT 59.626 38.462 3.14 0.00 39.77 2.40
3577 3757 5.449107 TTCACTCTGTGTACTCCAGTAAC 57.551 43.478 11.31 0.00 34.79 2.50
3641 3821 9.327628 CTTATGACATGATCAACAGAGATTTCT 57.672 33.333 0.00 0.00 41.93 2.52
3676 3856 2.171448 GAGCAAGAGAGGATTTAGCCCA 59.829 50.000 0.00 0.00 0.00 5.36
3682 3862 3.846588 AGAGAGGATTTAGCCCAAAGTGA 59.153 43.478 0.00 0.00 0.00 3.41
3766 3946 9.961265 ACCAACAGTAATTTCTTTTTAACTAGC 57.039 29.630 0.00 0.00 0.00 3.42
3834 4014 8.946085 CAATTTAGTAGCTGATGTCTTTACCAA 58.054 33.333 0.00 0.00 0.00 3.67
3836 4016 8.547967 TTTAGTAGCTGATGTCTTTACCAAAG 57.452 34.615 0.00 0.00 39.88 2.77
3847 4027 7.259290 TGTCTTTACCAAAGTTCTTGCTAAG 57.741 36.000 0.00 0.00 39.52 2.18
3857 4037 1.198713 TCTTGCTAAGGCTGCTAGCT 58.801 50.000 17.23 0.00 41.96 3.32
3858 4038 1.134580 TCTTGCTAAGGCTGCTAGCTG 60.135 52.381 17.23 16.92 41.96 4.24
4033 4214 5.947503 TGCGCATTAACTTTCATAAATGC 57.052 34.783 5.66 8.45 46.75 3.56
4117 4298 9.403583 GGTTGTAGAATTAGTGATTTTCCCATA 57.596 33.333 0.00 0.00 0.00 2.74
4222 4403 0.248843 CTGGTTGGAGAGGCAGACTC 59.751 60.000 0.00 0.00 46.98 3.36
4270 4451 1.367471 GAAAACTTGCCTGGCCACC 59.633 57.895 17.53 0.00 0.00 4.61
4273 4454 0.763986 AAACTTGCCTGGCCACCATT 60.764 50.000 17.53 2.11 30.82 3.16
4364 4545 5.568825 GCTCACTGTTTCTGGGACAACTATA 60.569 44.000 0.00 0.00 38.70 1.31
4369 4550 4.018779 TGTTTCTGGGACAACTATAAGGGG 60.019 45.833 0.00 0.00 38.70 4.79
4395 4576 4.473196 TCACAAATATCACCTGGCTTCCTA 59.527 41.667 0.00 0.00 0.00 2.94
4405 4586 0.690762 TGGCTTCCTAGGGTTGTGTC 59.309 55.000 9.46 0.00 0.00 3.67
4432 4614 2.102925 ACAAAAACAACATGGAGGCCTG 59.897 45.455 12.00 0.00 0.00 4.85
4483 4665 8.910351 ACTTATGTTTATTAGCTTCCTGGATC 57.090 34.615 0.00 0.00 0.00 3.36
4520 4703 6.914654 TGGATCATGACAAGATTTGGAAAA 57.085 33.333 0.00 0.00 34.12 2.29
4577 4760 8.169977 TCCTAATATTTTTGCCTGCTCTAATG 57.830 34.615 0.00 0.00 0.00 1.90
4667 4850 7.880195 CCTGGATAATAGGAGATGGTAAAAGTG 59.120 40.741 0.00 0.00 37.52 3.16
4669 4852 8.778059 TGGATAATAGGAGATGGTAAAAGTGTT 58.222 33.333 0.00 0.00 0.00 3.32
4681 4864 6.189133 TGGTAAAAGTGTTAGGTTTTGGAGT 58.811 36.000 0.00 0.00 0.00 3.85
4691 4874 2.158667 AGGTTTTGGAGTGATCGTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
4729 4912 7.147123 ACCCTAGCCACTAAATATTGGAATCTT 60.147 37.037 1.33 0.00 34.46 2.40
4822 5005 7.389053 TCTTTTAGGAGATGCTTTTCTCTTGAC 59.611 37.037 10.37 0.00 41.58 3.18
4831 5014 3.243501 GCTTTTCTCTTGACATGTTGGCA 60.244 43.478 0.00 0.00 30.30 4.92
4843 5026 0.325933 TGTTGGCAGAGTGGGATGAG 59.674 55.000 0.00 0.00 0.00 2.90
4844 5027 0.326264 GTTGGCAGAGTGGGATGAGT 59.674 55.000 0.00 0.00 0.00 3.41
4911 5094 5.174395 CACTGTTTGTTGGGATTTTGACAA 58.826 37.500 0.00 0.00 0.00 3.18
4949 5132 6.692681 CACTGTCAAGTCCTTTTACAACATTG 59.307 38.462 0.00 0.00 32.98 2.82
5033 5216 7.035004 TCTTCGCATTCATATTTTTCTTTGGG 58.965 34.615 0.00 0.00 0.00 4.12
5037 5220 7.973388 TCGCATTCATATTTTTCTTTGGGTTAG 59.027 33.333 0.00 0.00 0.00 2.34
5044 5227 5.794726 TTTTTCTTTGGGTTAGGGCTAAC 57.205 39.130 0.00 0.00 43.40 2.34
5059 5242 3.128764 GGGCTAACAACAAGCTATTGACC 59.871 47.826 15.62 10.93 38.83 4.02
5090 5273 7.750229 AATCTGCAGAAAAGACAATCAGTAA 57.250 32.000 22.50 0.00 0.00 2.24
5094 5277 8.939929 TCTGCAGAAAAGACAATCAGTAAATAG 58.060 33.333 15.67 0.00 0.00 1.73
5119 5302 4.449405 GCTTCCTGTCTTTTCTGTAGTGAC 59.551 45.833 0.00 0.00 0.00 3.67
5127 5310 5.467063 GTCTTTTCTGTAGTGACCCTGAAAG 59.533 44.000 5.53 0.00 0.00 2.62
5128 5311 3.402628 TTCTGTAGTGACCCTGAAAGC 57.597 47.619 0.00 0.00 0.00 3.51
5259 5442 5.717654 GGTGGTCCCTAAATAAAAATCACCA 59.282 40.000 0.00 0.00 40.22 4.17
5332 5515 7.678226 ACCGTAACGATATGTGTTTCAATTAC 58.322 34.615 0.00 0.00 0.00 1.89
5433 5618 3.485394 TGTCAAAGGAATAGTGCTGCAA 58.515 40.909 2.77 0.00 0.00 4.08
5485 5670 1.155390 CCGCCCCTCCTACTATGGA 59.845 63.158 0.00 0.00 34.52 3.41
5522 5707 2.289320 GCTGAAGAAGTGCTCAAGAGGA 60.289 50.000 0.00 0.00 0.00 3.71
5539 5724 4.401022 AGAGGAGCTATGAGAGAGTGATG 58.599 47.826 0.00 0.00 0.00 3.07
5540 5725 4.104579 AGAGGAGCTATGAGAGAGTGATGA 59.895 45.833 0.00 0.00 0.00 2.92
5546 5740 7.122501 GGAGCTATGAGAGAGTGATGATTCATA 59.877 40.741 0.00 0.00 33.56 2.15
5576 5780 6.015772 TGTTGTAGCTCCCCTTGTTTAATTTC 60.016 38.462 0.00 0.00 0.00 2.17
5577 5781 4.698304 TGTAGCTCCCCTTGTTTAATTTCG 59.302 41.667 0.00 0.00 0.00 3.46
5613 5821 3.267291 TCTCTAAGTAGTGACAGAGGCCT 59.733 47.826 3.86 3.86 36.11 5.19
5614 5822 3.357203 TCTAAGTAGTGACAGAGGCCTG 58.643 50.000 12.00 0.00 45.76 4.85
5671 5884 4.038080 GCTGTTTTCCCCCGCGTG 62.038 66.667 4.92 0.00 0.00 5.34
5679 5892 2.437716 CCCCCGCGTGCTTGTAAT 60.438 61.111 4.92 0.00 0.00 1.89
5694 5908 4.435651 GCTTGTAATCGTACTGAACCTTGC 60.436 45.833 0.00 0.00 0.00 4.01
5730 5944 1.078347 TCCAATTGGAACTGGGGCC 59.922 57.895 25.13 0.00 42.18 5.80
5819 6033 7.728847 AAACAATTTTCTCCATAAACTTGGC 57.271 32.000 0.00 0.00 34.86 4.52
5888 6102 8.551440 CACTATATTATGGAATGGATGGAGGAA 58.449 37.037 0.00 0.00 0.00 3.36
5952 6166 7.039882 ACTGAGAACCGTAGTAATTAACCATG 58.960 38.462 0.00 0.00 0.00 3.66
5955 6169 6.579865 AGAACCGTAGTAATTAACCATGAGG 58.420 40.000 0.00 0.00 42.21 3.86
5967 6181 2.336554 CCATGAGGTTTCTTGTTGCG 57.663 50.000 0.00 0.00 0.00 4.85
6006 6220 2.918345 GCGCACAATTGTGGCAGGA 61.918 57.895 33.56 0.00 45.72 3.86
6007 6221 1.210931 CGCACAATTGTGGCAGGAG 59.789 57.895 33.56 12.28 45.72 3.69
6008 6222 1.588082 GCACAATTGTGGCAGGAGG 59.412 57.895 33.56 11.59 45.72 4.30
6009 6223 1.181098 GCACAATTGTGGCAGGAGGT 61.181 55.000 33.56 0.00 45.72 3.85
6010 6224 1.886222 GCACAATTGTGGCAGGAGGTA 60.886 52.381 33.56 0.00 45.72 3.08
6011 6225 2.726821 CACAATTGTGGCAGGAGGTAT 58.273 47.619 27.60 0.00 42.10 2.73
6012 6226 2.684881 CACAATTGTGGCAGGAGGTATC 59.315 50.000 27.60 0.00 42.10 2.24
6015 6229 2.254152 TTGTGGCAGGAGGTATCTCT 57.746 50.000 2.34 0.00 39.86 3.10
6016 6230 2.254152 TGTGGCAGGAGGTATCTCTT 57.746 50.000 2.34 0.00 39.86 2.85
6017 6231 2.111384 TGTGGCAGGAGGTATCTCTTC 58.889 52.381 2.34 0.00 39.86 2.87
6018 6232 2.111384 GTGGCAGGAGGTATCTCTTCA 58.889 52.381 2.34 0.00 39.86 3.02
6034 6248 5.705400 TCTCTTCAAAAACCCTTTGATCCT 58.295 37.500 1.06 0.00 38.12 3.24
6069 6284 7.492524 AGTTTTTCTTTCTTTCAGACAATCCC 58.507 34.615 0.00 0.00 0.00 3.85
6080 6295 5.359194 TCAGACAATCCCCTTCTAATGAC 57.641 43.478 0.00 0.00 0.00 3.06
6098 6313 8.043113 TCTAATGACTGAAGTGCATCTTATGTT 58.957 33.333 0.00 0.00 36.40 2.71
6105 6320 5.348724 TGAAGTGCATCTTATGTTCTCGAAC 59.651 40.000 2.92 2.92 37.88 3.95
6111 6326 7.848051 GTGCATCTTATGTTCTCGAACTATTTG 59.152 37.037 10.75 3.59 41.67 2.32
6126 6341 7.820386 TCGAACTATTTGAAAGGTGCTACATAA 59.180 33.333 0.00 0.00 0.00 1.90
6127 6342 8.612619 CGAACTATTTGAAAGGTGCTACATAAT 58.387 33.333 0.00 0.00 0.00 1.28
6130 6345 9.686683 ACTATTTGAAAGGTGCTACATAATTCT 57.313 29.630 0.00 0.00 0.00 2.40
6141 6356 8.660373 GGTGCTACATAATTCTATGAACTATGC 58.340 37.037 8.17 0.00 37.68 3.14
6201 6416 5.065090 GCAATAAGTGTCTACATGCATGACA 59.935 40.000 32.75 22.57 38.24 3.58
6236 6451 6.779860 AGTTTAATGACCTACATGACACCTT 58.220 36.000 0.00 0.00 39.39 3.50
6238 6453 8.380099 AGTTTAATGACCTACATGACACCTTAA 58.620 33.333 0.00 0.00 39.39 1.85
6241 6456 9.747898 TTAATGACCTACATGACACCTTAAAAT 57.252 29.630 0.00 0.00 39.39 1.82
6243 6458 8.964476 ATGACCTACATGACACCTTAAAATAG 57.036 34.615 0.00 0.00 37.87 1.73
6244 6459 7.913789 TGACCTACATGACACCTTAAAATAGT 58.086 34.615 0.00 0.00 0.00 2.12
6245 6460 8.380099 TGACCTACATGACACCTTAAAATAGTT 58.620 33.333 0.00 0.00 0.00 2.24
6246 6461 8.788325 ACCTACATGACACCTTAAAATAGTTC 57.212 34.615 0.00 0.00 0.00 3.01
6250 6465 7.383687 ACATGACACCTTAAAATAGTTCGAGA 58.616 34.615 0.00 0.00 0.00 4.04
6256 6471 6.697892 CACCTTAAAATAGTTCGAGAGCCTAG 59.302 42.308 0.00 0.00 0.00 3.02
6278 6493 4.330894 AGATGACACACATATTGCACTTCG 59.669 41.667 0.00 0.00 39.56 3.79
6279 6494 2.741517 TGACACACATATTGCACTTCGG 59.258 45.455 0.00 0.00 0.00 4.30
6284 6499 1.559682 ACATATTGCACTTCGGGGAGT 59.440 47.619 0.00 0.00 0.00 3.85
6293 6508 1.916181 ACTTCGGGGAGTTGGATGATT 59.084 47.619 0.00 0.00 0.00 2.57
6307 6522 9.869844 GAGTTGGATGATTATTTTCATACTTCG 57.130 33.333 0.00 0.00 37.75 3.79
6321 6536 2.440539 ACTTCGAAGACTTGCGTGAT 57.559 45.000 31.08 1.77 34.32 3.06
6323 6538 3.243336 ACTTCGAAGACTTGCGTGATAC 58.757 45.455 31.08 0.00 34.32 2.24
6336 6551 4.933330 TGCGTGATACCTCTGAAATAGTC 58.067 43.478 0.00 0.00 0.00 2.59
6338 6553 4.537965 CGTGATACCTCTGAAATAGTCCG 58.462 47.826 0.00 0.00 0.00 4.79
6346 6561 3.024547 TCTGAAATAGTCCGAGGACCTG 58.975 50.000 17.85 7.20 45.59 4.00
6405 6623 3.895232 ACAACACGATATGCTCTCCTT 57.105 42.857 0.00 0.00 0.00 3.36
6408 6626 4.631813 ACAACACGATATGCTCTCCTTTTC 59.368 41.667 0.00 0.00 0.00 2.29
6437 6655 8.935844 CCCTAATTTCCAAAAATCTTAAACTGC 58.064 33.333 0.00 0.00 33.93 4.40
6438 6656 9.487790 CCTAATTTCCAAAAATCTTAAACTGCA 57.512 29.630 0.00 0.00 33.93 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.683334 GTTCGCCGGCAACACAGC 62.683 66.667 28.98 4.78 0.00 4.40
4 5 2.329678 TTTGTTCGCCGGCAACACAG 62.330 55.000 30.97 15.39 33.42 3.66
5 6 1.934220 TTTTGTTCGCCGGCAACACA 61.934 50.000 30.97 25.38 33.42 3.72
6 7 1.226717 TTTTGTTCGCCGGCAACAC 60.227 52.632 30.97 22.63 33.42 3.32
7 8 1.226717 GTTTTGTTCGCCGGCAACA 60.227 52.632 28.84 28.84 31.76 3.33
8 9 0.308376 TAGTTTTGTTCGCCGGCAAC 59.692 50.000 28.98 26.80 0.00 4.17
9 10 1.240256 ATAGTTTTGTTCGCCGGCAA 58.760 45.000 28.98 16.98 0.00 4.52
10 11 1.240256 AATAGTTTTGTTCGCCGGCA 58.760 45.000 28.98 11.20 0.00 5.69
11 12 2.341318 AAATAGTTTTGTTCGCCGGC 57.659 45.000 19.07 19.07 0.00 6.13
12 13 6.183360 CCAAAATAAATAGTTTTGTTCGCCGG 60.183 38.462 0.00 0.00 42.25 6.13
13 14 6.583050 TCCAAAATAAATAGTTTTGTTCGCCG 59.417 34.615 9.60 0.00 42.25 6.46
14 15 7.062956 CCTCCAAAATAAATAGTTTTGTTCGCC 59.937 37.037 9.60 0.00 42.25 5.54
15 16 7.597369 ACCTCCAAAATAAATAGTTTTGTTCGC 59.403 33.333 9.60 0.00 42.25 4.70
16 17 9.124807 GACCTCCAAAATAAATAGTTTTGTTCG 57.875 33.333 9.60 0.00 42.25 3.95
17 18 9.124807 CGACCTCCAAAATAAATAGTTTTGTTC 57.875 33.333 9.60 2.14 42.25 3.18
18 19 8.085909 CCGACCTCCAAAATAAATAGTTTTGTT 58.914 33.333 9.60 0.00 42.25 2.83
19 20 7.599171 CCGACCTCCAAAATAAATAGTTTTGT 58.401 34.615 9.60 0.00 42.25 2.83
20 21 6.530181 GCCGACCTCCAAAATAAATAGTTTTG 59.470 38.462 4.76 4.76 43.00 2.44
21 22 6.436218 AGCCGACCTCCAAAATAAATAGTTTT 59.564 34.615 0.00 0.00 0.00 2.43
22 23 5.949952 AGCCGACCTCCAAAATAAATAGTTT 59.050 36.000 0.00 0.00 0.00 2.66
23 24 5.357032 CAGCCGACCTCCAAAATAAATAGTT 59.643 40.000 0.00 0.00 0.00 2.24
24 25 4.881850 CAGCCGACCTCCAAAATAAATAGT 59.118 41.667 0.00 0.00 0.00 2.12
25 26 4.881850 ACAGCCGACCTCCAAAATAAATAG 59.118 41.667 0.00 0.00 0.00 1.73
26 27 4.638421 CACAGCCGACCTCCAAAATAAATA 59.362 41.667 0.00 0.00 0.00 1.40
27 28 3.443681 CACAGCCGACCTCCAAAATAAAT 59.556 43.478 0.00 0.00 0.00 1.40
28 29 2.817258 CACAGCCGACCTCCAAAATAAA 59.183 45.455 0.00 0.00 0.00 1.40
29 30 2.224670 ACACAGCCGACCTCCAAAATAA 60.225 45.455 0.00 0.00 0.00 1.40
30 31 1.349688 ACACAGCCGACCTCCAAAATA 59.650 47.619 0.00 0.00 0.00 1.40
31 32 0.110486 ACACAGCCGACCTCCAAAAT 59.890 50.000 0.00 0.00 0.00 1.82
32 33 0.106918 AACACAGCCGACCTCCAAAA 60.107 50.000 0.00 0.00 0.00 2.44
33 34 0.817634 CAACACAGCCGACCTCCAAA 60.818 55.000 0.00 0.00 0.00 3.28
34 35 1.227823 CAACACAGCCGACCTCCAA 60.228 57.895 0.00 0.00 0.00 3.53
35 36 2.425592 CAACACAGCCGACCTCCA 59.574 61.111 0.00 0.00 0.00 3.86
36 37 3.050275 GCAACACAGCCGACCTCC 61.050 66.667 0.00 0.00 0.00 4.30
37 38 2.031163 AGCAACACAGCCGACCTC 59.969 61.111 0.00 0.00 34.23 3.85
38 39 2.281070 CAGCAACACAGCCGACCT 60.281 61.111 0.00 0.00 34.23 3.85
39 40 3.357079 CCAGCAACACAGCCGACC 61.357 66.667 0.00 0.00 34.23 4.79
40 41 4.030452 GCCAGCAACACAGCCGAC 62.030 66.667 0.00 0.00 34.23 4.79
43 44 3.982241 GTGGCCAGCAACACAGCC 61.982 66.667 5.11 0.00 45.96 4.85
44 45 2.908940 AGTGGCCAGCAACACAGC 60.909 61.111 5.11 0.00 39.99 4.40
45 46 2.558286 CCAGTGGCCAGCAACACAG 61.558 63.158 5.11 0.00 39.99 3.66
46 47 2.519063 CCAGTGGCCAGCAACACA 60.519 61.111 5.11 0.00 39.99 3.72
47 48 3.982241 GCCAGTGGCCAGCAACAC 61.982 66.667 24.53 0.00 44.06 3.32
64 65 4.680237 TCCTCGCCGGCAACACAG 62.680 66.667 28.98 12.94 0.00 3.66
65 66 4.980805 GTCCTCGCCGGCAACACA 62.981 66.667 28.98 2.06 0.00 3.72
71 72 4.849329 CTACACGTCCTCGCCGGC 62.849 72.222 19.07 19.07 41.18 6.13
72 73 4.189188 CCTACACGTCCTCGCCGG 62.189 72.222 0.00 0.00 41.18 6.13
73 74 4.849329 GCCTACACGTCCTCGCCG 62.849 72.222 0.00 0.00 41.18 6.46
74 75 4.509737 GGCCTACACGTCCTCGCC 62.510 72.222 0.00 0.00 41.18 5.54
75 76 4.849329 CGGCCTACACGTCCTCGC 62.849 72.222 0.00 0.00 41.18 5.03
76 77 4.849329 GCGGCCTACACGTCCTCG 62.849 72.222 0.00 0.00 43.34 4.63
77 78 3.450115 AGCGGCCTACACGTCCTC 61.450 66.667 0.00 0.00 0.00 3.71
78 79 3.760035 CAGCGGCCTACACGTCCT 61.760 66.667 0.00 0.00 0.00 3.85
79 80 4.814294 CCAGCGGCCTACACGTCC 62.814 72.222 0.00 0.00 0.00 4.79
96 97 4.279043 ACGCCCGGCAACAAAAGC 62.279 61.111 10.77 0.00 0.00 3.51
97 98 2.343163 TTCACGCCCGGCAACAAAAG 62.343 55.000 10.77 0.00 0.00 2.27
98 99 2.415608 TTCACGCCCGGCAACAAAA 61.416 52.632 10.77 0.00 0.00 2.44
99 100 2.829003 TTCACGCCCGGCAACAAA 60.829 55.556 10.77 0.00 0.00 2.83
100 101 2.661840 TAGTTCACGCCCGGCAACAA 62.662 55.000 10.77 0.00 0.00 2.83
101 102 3.166490 TAGTTCACGCCCGGCAACA 62.166 57.895 10.77 0.00 0.00 3.33
102 103 2.357760 TAGTTCACGCCCGGCAAC 60.358 61.111 10.77 6.61 0.00 4.17
103 104 2.047655 CTAGTTCACGCCCGGCAA 60.048 61.111 10.77 0.00 0.00 4.52
104 105 4.077184 CCTAGTTCACGCCCGGCA 62.077 66.667 10.77 0.00 0.00 5.69
105 106 4.832608 CCCTAGTTCACGCCCGGC 62.833 72.222 0.00 0.00 0.00 6.13
106 107 4.832608 GCCCTAGTTCACGCCCGG 62.833 72.222 0.00 0.00 0.00 5.73
107 108 4.832608 GGCCCTAGTTCACGCCCG 62.833 72.222 0.00 0.00 35.23 6.13
108 109 4.832608 CGGCCCTAGTTCACGCCC 62.833 72.222 0.00 0.00 38.19 6.13
111 112 2.509336 CAGCGGCCCTAGTTCACG 60.509 66.667 0.00 0.00 0.00 4.35
112 113 2.125106 CCAGCGGCCCTAGTTCAC 60.125 66.667 0.00 0.00 0.00 3.18
113 114 4.096003 GCCAGCGGCCCTAGTTCA 62.096 66.667 8.18 0.00 44.06 3.18
123 124 2.182842 GCCTAGTTCATGCCAGCGG 61.183 63.158 0.00 0.00 0.00 5.52
124 125 2.182842 GGCCTAGTTCATGCCAGCG 61.183 63.158 0.00 0.00 44.70 5.18
125 126 2.182842 CGGCCTAGTTCATGCCAGC 61.183 63.158 0.00 0.00 45.63 4.85
126 127 1.524621 CCGGCCTAGTTCATGCCAG 60.525 63.158 0.00 1.30 45.63 4.85
127 128 2.589540 CCGGCCTAGTTCATGCCA 59.410 61.111 0.00 0.00 45.63 4.92
128 129 2.902343 GCCGGCCTAGTTCATGCC 60.902 66.667 18.11 0.00 41.85 4.40
129 130 2.902343 GGCCGGCCTAGTTCATGC 60.902 66.667 38.76 7.31 0.00 4.06
130 131 2.588877 CGGCCGGCCTAGTTCATG 60.589 66.667 41.01 20.75 0.00 3.07
131 132 4.547367 GCGGCCGGCCTAGTTCAT 62.547 66.667 41.01 0.00 34.80 2.57
140 141 3.887868 CAAATACCAGCGGCCGGC 61.888 66.667 29.38 21.18 44.05 6.13
141 142 1.309499 TTTCAAATACCAGCGGCCGG 61.309 55.000 29.38 13.36 0.00 6.13
142 143 0.179174 GTTTCAAATACCAGCGGCCG 60.179 55.000 24.05 24.05 0.00 6.13
143 144 0.179174 CGTTTCAAATACCAGCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
144 145 0.519961 ACGTTTCAAATACCAGCGGC 59.480 50.000 0.00 0.00 0.00 6.53
145 146 2.482721 AGAACGTTTCAAATACCAGCGG 59.517 45.455 0.46 0.00 0.00 5.52
146 147 3.806316 AGAACGTTTCAAATACCAGCG 57.194 42.857 0.46 0.00 0.00 5.18
147 148 4.855531 ACAAGAACGTTTCAAATACCAGC 58.144 39.130 0.46 0.00 0.00 4.85
148 149 6.970043 TCAAACAAGAACGTTTCAAATACCAG 59.030 34.615 0.46 0.00 36.98 4.00
149 150 6.853720 TCAAACAAGAACGTTTCAAATACCA 58.146 32.000 0.46 0.00 36.98 3.25
150 151 7.743520 TTCAAACAAGAACGTTTCAAATACC 57.256 32.000 0.46 0.00 36.98 2.73
153 154 8.930760 TCATTTTCAAACAAGAACGTTTCAAAT 58.069 25.926 0.46 0.00 36.98 2.32
154 155 8.299262 TCATTTTCAAACAAGAACGTTTCAAA 57.701 26.923 0.46 0.00 36.98 2.69
155 156 7.875316 TCATTTTCAAACAAGAACGTTTCAA 57.125 28.000 0.46 0.00 36.98 2.69
156 157 7.062839 CCTTCATTTTCAAACAAGAACGTTTCA 59.937 33.333 0.46 0.00 36.98 2.69
157 158 7.391016 CCTTCATTTTCAAACAAGAACGTTTC 58.609 34.615 0.46 0.00 36.98 2.78
158 159 6.183360 GCCTTCATTTTCAAACAAGAACGTTT 60.183 34.615 0.46 0.00 39.67 3.60
159 160 5.290885 GCCTTCATTTTCAAACAAGAACGTT 59.709 36.000 0.00 0.00 0.00 3.99
160 161 4.803613 GCCTTCATTTTCAAACAAGAACGT 59.196 37.500 0.00 0.00 0.00 3.99
161 162 4.085619 CGCCTTCATTTTCAAACAAGAACG 60.086 41.667 0.00 0.00 0.00 3.95
162 163 4.209080 CCGCCTTCATTTTCAAACAAGAAC 59.791 41.667 0.00 0.00 0.00 3.01
163 164 4.098654 TCCGCCTTCATTTTCAAACAAGAA 59.901 37.500 0.00 0.00 0.00 2.52
164 165 3.634448 TCCGCCTTCATTTTCAAACAAGA 59.366 39.130 0.00 0.00 0.00 3.02
165 166 3.735746 GTCCGCCTTCATTTTCAAACAAG 59.264 43.478 0.00 0.00 0.00 3.16
166 167 3.131223 TGTCCGCCTTCATTTTCAAACAA 59.869 39.130 0.00 0.00 0.00 2.83
167 168 2.690497 TGTCCGCCTTCATTTTCAAACA 59.310 40.909 0.00 0.00 0.00 2.83
168 169 3.308530 CTGTCCGCCTTCATTTTCAAAC 58.691 45.455 0.00 0.00 0.00 2.93
169 170 2.295909 CCTGTCCGCCTTCATTTTCAAA 59.704 45.455 0.00 0.00 0.00 2.69
170 171 1.885887 CCTGTCCGCCTTCATTTTCAA 59.114 47.619 0.00 0.00 0.00 2.69
171 172 1.073125 TCCTGTCCGCCTTCATTTTCA 59.927 47.619 0.00 0.00 0.00 2.69
172 173 1.821216 TCCTGTCCGCCTTCATTTTC 58.179 50.000 0.00 0.00 0.00 2.29
173 174 2.094675 CATCCTGTCCGCCTTCATTTT 58.905 47.619 0.00 0.00 0.00 1.82
174 175 1.683011 CCATCCTGTCCGCCTTCATTT 60.683 52.381 0.00 0.00 0.00 2.32
175 176 0.107017 CCATCCTGTCCGCCTTCATT 60.107 55.000 0.00 0.00 0.00 2.57
176 177 1.528824 CCATCCTGTCCGCCTTCAT 59.471 57.895 0.00 0.00 0.00 2.57
177 178 2.669133 CCCATCCTGTCCGCCTTCA 61.669 63.158 0.00 0.00 0.00 3.02
178 179 1.335132 TACCCATCCTGTCCGCCTTC 61.335 60.000 0.00 0.00 0.00 3.46
179 180 0.912487 TTACCCATCCTGTCCGCCTT 60.912 55.000 0.00 0.00 0.00 4.35
180 181 0.912487 TTTACCCATCCTGTCCGCCT 60.912 55.000 0.00 0.00 0.00 5.52
181 182 0.034863 TTTTACCCATCCTGTCCGCC 60.035 55.000 0.00 0.00 0.00 6.13
182 183 1.379527 CTTTTACCCATCCTGTCCGC 58.620 55.000 0.00 0.00 0.00 5.54
183 184 1.557832 TCCTTTTACCCATCCTGTCCG 59.442 52.381 0.00 0.00 0.00 4.79
184 185 3.555966 CATCCTTTTACCCATCCTGTCC 58.444 50.000 0.00 0.00 0.00 4.02
185 186 2.952310 GCATCCTTTTACCCATCCTGTC 59.048 50.000 0.00 0.00 0.00 3.51
186 187 2.683742 CGCATCCTTTTACCCATCCTGT 60.684 50.000 0.00 0.00 0.00 4.00
187 188 1.949525 CGCATCCTTTTACCCATCCTG 59.050 52.381 0.00 0.00 0.00 3.86
188 189 1.133792 CCGCATCCTTTTACCCATCCT 60.134 52.381 0.00 0.00 0.00 3.24
189 190 1.318576 CCGCATCCTTTTACCCATCC 58.681 55.000 0.00 0.00 0.00 3.51
190 191 0.668535 GCCGCATCCTTTTACCCATC 59.331 55.000 0.00 0.00 0.00 3.51
191 192 0.755327 GGCCGCATCCTTTTACCCAT 60.755 55.000 0.00 0.00 0.00 4.00
192 193 1.379309 GGCCGCATCCTTTTACCCA 60.379 57.895 0.00 0.00 0.00 4.51
193 194 2.478033 CGGCCGCATCCTTTTACCC 61.478 63.158 14.67 0.00 0.00 3.69
194 195 3.107447 CGGCCGCATCCTTTTACC 58.893 61.111 14.67 0.00 0.00 2.85
195 196 2.407616 GCGGCCGCATCCTTTTAC 59.592 61.111 43.55 11.09 41.49 2.01
196 197 3.199190 CGCGGCCGCATCCTTTTA 61.199 61.111 45.26 0.00 42.06 1.52
228 229 3.687321 CTGTCCTGGGATGCGGTGG 62.687 68.421 0.00 0.00 0.00 4.61
229 230 2.124983 CTGTCCTGGGATGCGGTG 60.125 66.667 0.00 0.00 0.00 4.94
230 231 3.402681 CCTGTCCTGGGATGCGGT 61.403 66.667 0.00 0.00 0.00 5.68
231 232 4.864334 GCCTGTCCTGGGATGCGG 62.864 72.222 0.00 0.00 0.00 5.69
232 233 4.864334 GGCCTGTCCTGGGATGCG 62.864 72.222 0.00 0.00 0.00 4.73
233 234 4.512914 GGGCCTGTCCTGGGATGC 62.513 72.222 0.84 0.00 34.39 3.91
234 235 4.181010 CGGGCCTGTCCTGGGATG 62.181 72.222 2.29 0.00 37.58 3.51
239 240 4.394712 GTGTCCGGGCCTGTCCTG 62.395 72.222 11.58 0.00 41.11 3.86
242 243 4.736896 GTCGTGTCCGGGCCTGTC 62.737 72.222 11.58 3.86 33.95 3.51
248 249 4.157120 GATGGGGTCGTGTCCGGG 62.157 72.222 0.00 0.00 33.95 5.73
249 250 4.508128 CGATGGGGTCGTGTCCGG 62.508 72.222 0.00 0.00 45.19 5.14
257 258 3.557290 GGGTAGGGCGATGGGGTC 61.557 72.222 0.00 0.00 0.00 4.46
258 259 3.954740 TTGGGTAGGGCGATGGGGT 62.955 63.158 0.00 0.00 0.00 4.95
259 260 2.685534 TTTGGGTAGGGCGATGGGG 61.686 63.158 0.00 0.00 0.00 4.96
260 261 1.453197 GTTTGGGTAGGGCGATGGG 60.453 63.158 0.00 0.00 0.00 4.00
261 262 1.817941 CGTTTGGGTAGGGCGATGG 60.818 63.158 0.00 0.00 0.00 3.51
262 263 1.817941 CCGTTTGGGTAGGGCGATG 60.818 63.158 0.00 0.00 0.00 3.84
263 264 1.991167 TCCGTTTGGGTAGGGCGAT 60.991 57.895 0.00 0.00 37.00 4.58
264 265 2.604079 TCCGTTTGGGTAGGGCGA 60.604 61.111 0.00 0.00 37.00 5.54
265 266 2.435410 GTCCGTTTGGGTAGGGCG 60.435 66.667 0.00 0.00 37.00 6.13
266 267 1.376812 CTGTCCGTTTGGGTAGGGC 60.377 63.158 0.00 0.00 37.00 5.19
267 268 0.688487 TTCTGTCCGTTTGGGTAGGG 59.312 55.000 0.00 0.00 37.00 3.53
268 269 2.781681 ATTCTGTCCGTTTGGGTAGG 57.218 50.000 0.00 0.00 37.00 3.18
269 270 2.671396 CGAATTCTGTCCGTTTGGGTAG 59.329 50.000 3.52 0.00 37.00 3.18
270 271 2.613474 CCGAATTCTGTCCGTTTGGGTA 60.613 50.000 3.52 0.00 37.00 3.69
271 272 1.519408 CGAATTCTGTCCGTTTGGGT 58.481 50.000 3.52 0.00 37.00 4.51
272 273 0.802494 CCGAATTCTGTCCGTTTGGG 59.198 55.000 3.52 0.00 35.24 4.12
273 274 1.803334 TCCGAATTCTGTCCGTTTGG 58.197 50.000 3.52 0.00 0.00 3.28
274 275 5.539582 TTTATCCGAATTCTGTCCGTTTG 57.460 39.130 3.52 0.00 0.00 2.93
275 276 5.390145 CGTTTTATCCGAATTCTGTCCGTTT 60.390 40.000 3.52 0.00 0.00 3.60
276 277 4.092383 CGTTTTATCCGAATTCTGTCCGTT 59.908 41.667 3.52 0.00 0.00 4.44
277 278 3.615496 CGTTTTATCCGAATTCTGTCCGT 59.385 43.478 3.52 0.00 0.00 4.69
278 279 3.000925 CCGTTTTATCCGAATTCTGTCCG 59.999 47.826 3.52 0.00 0.00 4.79
279 280 4.033702 GTCCGTTTTATCCGAATTCTGTCC 59.966 45.833 3.52 0.00 0.00 4.02
280 281 4.259690 CGTCCGTTTTATCCGAATTCTGTC 60.260 45.833 3.52 0.00 0.00 3.51
281 282 3.615496 CGTCCGTTTTATCCGAATTCTGT 59.385 43.478 3.52 0.00 0.00 3.41
282 283 3.615496 ACGTCCGTTTTATCCGAATTCTG 59.385 43.478 3.52 0.00 0.00 3.02
283 284 3.853475 ACGTCCGTTTTATCCGAATTCT 58.147 40.909 3.52 0.00 0.00 2.40
284 285 3.000623 GGACGTCCGTTTTATCCGAATTC 59.999 47.826 20.85 0.00 0.00 2.17
285 286 2.931969 GGACGTCCGTTTTATCCGAATT 59.068 45.455 20.85 0.00 0.00 2.17
286 287 2.543641 GGACGTCCGTTTTATCCGAAT 58.456 47.619 20.85 0.00 0.00 3.34
287 288 1.994916 GGACGTCCGTTTTATCCGAA 58.005 50.000 20.85 0.00 0.00 4.30
288 289 3.719699 GGACGTCCGTTTTATCCGA 57.280 52.632 20.85 0.00 0.00 4.55
299 300 2.357881 GACCCCAAACGGACGTCC 60.358 66.667 25.28 25.28 0.00 4.79
300 301 2.735857 CGACCCCAAACGGACGTC 60.736 66.667 7.13 7.13 0.00 4.34
301 302 3.539791 ACGACCCCAAACGGACGT 61.540 61.111 0.00 0.00 38.78 4.34
302 303 3.039588 CACGACCCCAAACGGACG 61.040 66.667 0.00 0.00 37.29 4.79
303 304 3.351416 GCACGACCCCAAACGGAC 61.351 66.667 0.00 0.00 0.00 4.79
304 305 4.973055 CGCACGACCCCAAACGGA 62.973 66.667 0.00 0.00 0.00 4.69
307 308 3.656045 CACCGCACGACCCCAAAC 61.656 66.667 0.00 0.00 0.00 2.93
308 309 4.939368 CCACCGCACGACCCCAAA 62.939 66.667 0.00 0.00 0.00 3.28
312 313 4.309950 AACTCCACCGCACGACCC 62.310 66.667 0.00 0.00 0.00 4.46
313 314 3.041940 CAACTCCACCGCACGACC 61.042 66.667 0.00 0.00 0.00 4.79
314 315 3.041940 CCAACTCCACCGCACGAC 61.042 66.667 0.00 0.00 0.00 4.34
315 316 4.980805 GCCAACTCCACCGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
317 318 2.741486 TTAGGCCAACTCCACCGCAC 62.741 60.000 5.01 0.00 0.00 5.34
318 319 2.463589 CTTAGGCCAACTCCACCGCA 62.464 60.000 5.01 0.00 0.00 5.69
319 320 1.745489 CTTAGGCCAACTCCACCGC 60.745 63.158 5.01 0.00 0.00 5.68
320 321 1.078426 CCTTAGGCCAACTCCACCG 60.078 63.158 5.01 0.00 0.00 4.94
321 322 1.303282 CCCTTAGGCCAACTCCACC 59.697 63.158 5.01 0.00 0.00 4.61
332 333 1.656652 CATGTGAGAACGCCCTTAGG 58.343 55.000 0.00 0.00 0.00 2.69
333 334 1.656652 CCATGTGAGAACGCCCTTAG 58.343 55.000 0.00 0.00 0.00 2.18
349 350 3.157087 CAAACTAGGTGGAAACTGCCAT 58.843 45.455 0.00 0.00 40.68 4.40
355 356 3.001939 CGTGTCACAAACTAGGTGGAAAC 59.998 47.826 3.42 0.00 36.90 2.78
356 357 3.199677 CGTGTCACAAACTAGGTGGAAA 58.800 45.455 3.42 0.00 36.90 3.13
370 371 4.664677 AGGTCCGCAGCGTGTCAC 62.665 66.667 15.05 4.52 0.00 3.67
380 381 3.471806 GGGGAGAAGGAGGTCCGC 61.472 72.222 0.00 0.00 42.08 5.54
381 382 3.148279 CGGGGAGAAGGAGGTCCG 61.148 72.222 0.00 0.00 42.08 4.79
394 395 2.107950 TGATTACAAGCTGTTCGGGG 57.892 50.000 0.00 0.00 0.00 5.73
395 396 2.223340 GCATGATTACAAGCTGTTCGGG 60.223 50.000 0.00 0.00 37.68 5.14
396 397 2.419673 TGCATGATTACAAGCTGTTCGG 59.580 45.455 0.00 0.00 40.70 4.30
398 399 3.428045 GGGTGCATGATTACAAGCTGTTC 60.428 47.826 0.00 0.00 40.70 3.18
399 400 2.493278 GGGTGCATGATTACAAGCTGTT 59.507 45.455 0.00 0.00 40.70 3.16
400 401 2.094675 GGGTGCATGATTACAAGCTGT 58.905 47.619 0.00 0.00 40.70 4.40
401 402 2.093890 TGGGTGCATGATTACAAGCTG 58.906 47.619 0.00 0.00 40.70 4.24
413 417 2.584608 GTACGAGCCTGGGTGCAT 59.415 61.111 1.59 0.00 0.00 3.96
431 435 8.428063 AGAAATACCAGTTCTATCATGAAGAGG 58.572 37.037 0.00 5.09 33.53 3.69
442 446 8.367660 AGAGTCAATGAGAAATACCAGTTCTA 57.632 34.615 0.00 0.00 35.46 2.10
450 454 6.410540 ACCCAAGAGAGTCAATGAGAAATAC 58.589 40.000 0.00 0.00 0.00 1.89
463 467 7.264294 AGAAATAAGATGAACCCAAGAGAGT 57.736 36.000 0.00 0.00 0.00 3.24
477 481 7.893302 TGTGGTGGGATGTAAAAGAAATAAGAT 59.107 33.333 0.00 0.00 0.00 2.40
560 568 2.094390 CGGTCGAAGGATTTGGTCAGTA 60.094 50.000 0.00 0.00 0.00 2.74
578 586 3.195825 AGAGCTACTGAACAATAAGCGGT 59.804 43.478 0.00 0.00 38.23 5.68
581 589 6.801575 AGAGTAGAGCTACTGAACAATAAGC 58.198 40.000 14.45 0.00 45.63 3.09
707 716 2.125106 GGATGGAGGTGGACGCAC 60.125 66.667 0.00 0.00 0.00 5.34
710 719 3.480133 GGGGGATGGAGGTGGACG 61.480 72.222 0.00 0.00 0.00 4.79
718 727 3.461831 AGTATTGATTTTCGGGGGATGGA 59.538 43.478 0.00 0.00 0.00 3.41
730 739 5.817296 TCGCACATAAGCTCAGTATTGATTT 59.183 36.000 0.00 0.00 31.68 2.17
731 740 5.359756 TCGCACATAAGCTCAGTATTGATT 58.640 37.500 0.00 0.00 31.68 2.57
752 761 0.510359 GCTTGCTCACAACAGTCTCG 59.490 55.000 0.00 0.00 0.00 4.04
777 786 1.532868 CCGAAACTGAAGCACTTCCTG 59.467 52.381 7.88 3.92 38.77 3.86
805 814 2.440409 GGGTGATATATGGGCAAGCAG 58.560 52.381 0.00 0.00 0.00 4.24
885 894 0.393673 TGTGTATGATTGGGCGGTGG 60.394 55.000 0.00 0.00 0.00 4.61
901 910 9.581099 AGTAAAGTGGTCTTTGTTTATTTTGTG 57.419 29.630 3.85 0.00 42.86 3.33
929 970 7.094291 ACCTCTTTGTGTATGAGTACTGAGTAC 60.094 40.741 14.69 14.69 39.10 2.73
935 980 5.008331 TCGACCTCTTTGTGTATGAGTACT 58.992 41.667 0.00 0.00 0.00 2.73
1214 1272 3.839432 GTTCCTCCTCCTCCCGCG 61.839 72.222 0.00 0.00 0.00 6.46
1570 1634 0.038166 ATGTTGGTCTGCCCGAATGT 59.962 50.000 0.00 0.00 35.15 2.71
1665 1729 1.299392 CGATGCGGCGATTCTCTGA 60.299 57.895 12.98 0.00 0.00 3.27
1703 1770 4.085466 CGCATGCGATTGACCAAAATAATG 60.085 41.667 35.82 0.00 42.83 1.90
1778 1858 2.124736 CATCCATGTCCGGCCGTT 60.125 61.111 26.12 2.46 0.00 4.44
1797 1877 6.750963 CCTTTCGTCCTACAAATACAGAGTAC 59.249 42.308 0.00 0.00 0.00 2.73
1965 2069 0.033991 CTTGAGGACGAGGAGGAGGA 60.034 60.000 0.00 0.00 0.00 3.71
1966 2070 0.033991 TCTTGAGGACGAGGAGGAGG 60.034 60.000 0.00 0.00 0.00 4.30
1967 2071 1.388547 CTCTTGAGGACGAGGAGGAG 58.611 60.000 0.00 0.00 0.00 3.69
2007 2111 4.357142 CACCAACAGCTGATTAATGCATC 58.643 43.478 23.35 0.00 0.00 3.91
2008 2112 3.131577 CCACCAACAGCTGATTAATGCAT 59.868 43.478 23.35 0.00 0.00 3.96
2010 2114 2.159198 CCCACCAACAGCTGATTAATGC 60.159 50.000 23.35 0.00 0.00 3.56
2020 2124 1.244019 ATCGCTTTCCCACCAACAGC 61.244 55.000 0.00 0.00 0.00 4.40
2058 2168 1.004918 GAACCACGACCTCACCCAG 60.005 63.158 0.00 0.00 0.00 4.45
2061 2171 0.391597 TCAAGAACCACGACCTCACC 59.608 55.000 0.00 0.00 0.00 4.02
2084 2195 4.682320 GCTGGTTCTTCCATCCATACGTAA 60.682 45.833 0.00 0.00 46.12 3.18
2196 2351 3.909258 CTACGTTCACGCCACCGCT 62.909 63.158 0.00 0.00 44.43 5.52
2234 2391 7.581476 CAAAGCTTCTCCATTTTACGTTTCTA 58.419 34.615 0.00 0.00 0.00 2.10
2244 2401 2.227388 CTCGTGCAAAGCTTCTCCATTT 59.773 45.455 0.00 0.00 0.00 2.32
2290 2462 0.454452 CTCGTCGCAACATGTCTCGA 60.454 55.000 15.54 15.54 0.00 4.04
2300 2472 4.812626 TCTACTGTATATGTCTCGTCGCAA 59.187 41.667 0.00 0.00 0.00 4.85
2301 2473 4.374399 TCTACTGTATATGTCTCGTCGCA 58.626 43.478 0.00 0.00 0.00 5.10
2302 2474 4.986875 TCTACTGTATATGTCTCGTCGC 57.013 45.455 0.00 0.00 0.00 5.19
2303 2475 6.946165 AGTTTCTACTGTATATGTCTCGTCG 58.054 40.000 0.00 0.00 31.99 5.12
2304 2476 9.649024 GTTAGTTTCTACTGTATATGTCTCGTC 57.351 37.037 0.00 0.00 35.78 4.20
2305 2477 9.170734 TGTTAGTTTCTACTGTATATGTCTCGT 57.829 33.333 0.00 0.00 35.78 4.18
2306 2478 9.999009 TTGTTAGTTTCTACTGTATATGTCTCG 57.001 33.333 0.00 0.00 35.78 4.04
2421 2593 5.070770 AGAGAGTAGCACATCACTGAAAG 57.929 43.478 0.00 0.00 42.29 2.62
2422 2594 4.769488 AGAGAGAGTAGCACATCACTGAAA 59.231 41.667 0.00 0.00 0.00 2.69
2758 2934 3.142174 GTTATATTCAGCCACCAGAGCC 58.858 50.000 0.00 0.00 0.00 4.70
2914 3092 4.202441 CATTCAGGTCCCCTTCAAGTATG 58.798 47.826 0.00 0.00 0.00 2.39
3085 3263 5.006165 GTCATCTTTCAGGTCGATGTTGATC 59.994 44.000 0.00 0.00 36.72 2.92
3113 3291 1.419387 CACCTTCTCATCATCTCCCCC 59.581 57.143 0.00 0.00 0.00 5.40
3134 3312 8.206126 TCCAGGATGTTATTATGCTCAATAGA 57.794 34.615 0.00 0.00 0.00 1.98
3138 3316 8.049117 GGATATCCAGGATGTTATTATGCTCAA 58.951 37.037 17.34 0.00 35.64 3.02
3187 3365 1.893919 AAGAGCCGAAGACAGCCTCC 61.894 60.000 0.00 0.00 0.00 4.30
3222 3400 1.076339 GGAAATCCATCCGGCCCAA 60.076 57.895 0.00 0.00 35.64 4.12
3343 3522 6.989155 TTAGGGACTAGAGTCAACAAAGAA 57.011 37.500 11.64 0.00 44.25 2.52
3352 3531 3.634910 CAGCCTCTTTAGGGACTAGAGTC 59.365 52.174 0.00 0.75 44.25 3.36
3400 3579 3.317149 TGCAATTGATCATAGCAAGAGGC 59.683 43.478 10.34 1.90 45.30 4.70
3577 3757 9.342308 TCTAGCTTGAATATAAAACCAGATTGG 57.658 33.333 0.00 0.00 45.02 3.16
3595 3775 9.486497 TCATAAGCTTTCTCATAATCTAGCTTG 57.514 33.333 3.20 0.00 45.49 4.01
3598 3778 8.824159 TGTCATAAGCTTTCTCATAATCTAGC 57.176 34.615 3.20 0.00 0.00 3.42
3708 3888 0.404426 AACCCCAACAGAGCCCTTAC 59.596 55.000 0.00 0.00 0.00 2.34
3712 3892 3.595190 ATATTAACCCCAACAGAGCCC 57.405 47.619 0.00 0.00 0.00 5.19
3766 3946 2.673523 CCCTGCCTGACTCCCTTG 59.326 66.667 0.00 0.00 0.00 3.61
3834 4014 2.575805 AGCAGCCTTAGCAAGAACTT 57.424 45.000 0.00 0.00 43.56 2.66
3836 4016 1.668237 GCTAGCAGCCTTAGCAAGAAC 59.332 52.381 10.63 0.00 43.56 3.01
3847 4027 1.139853 AGGATGTTACAGCTAGCAGCC 59.860 52.381 18.83 7.11 43.77 4.85
3988 4169 5.350504 TCCCAGAAATTTGTTCAAAGCAA 57.649 34.783 0.00 0.00 0.00 3.91
3997 4178 1.255882 TGCGCATCCCAGAAATTTGT 58.744 45.000 5.66 0.00 0.00 2.83
4364 4545 3.052642 AGGTGATATTTGTGATGCCCCTT 60.053 43.478 0.00 0.00 0.00 3.95
4369 4550 2.954318 AGCCAGGTGATATTTGTGATGC 59.046 45.455 0.00 0.00 0.00 3.91
4395 4576 4.497291 TTTTGTAGAGTGACACAACCCT 57.503 40.909 8.59 2.11 34.52 4.34
4405 4586 5.762045 CCTCCATGTTGTTTTTGTAGAGTG 58.238 41.667 0.00 0.00 0.00 3.51
4520 4703 7.285401 AGTGTTGTACTTGGAATCAATGACTTT 59.715 33.333 0.00 0.00 35.67 2.66
4532 4715 6.620877 AGGATTATGAGTGTTGTACTTGGA 57.379 37.500 0.00 0.00 40.53 3.53
4567 4750 2.019984 GAAGCCCCAACATTAGAGCAG 58.980 52.381 0.00 0.00 0.00 4.24
4667 4850 4.083484 CCAACGATCACTCCAAAACCTAAC 60.083 45.833 0.00 0.00 0.00 2.34
4669 4852 3.071892 ACCAACGATCACTCCAAAACCTA 59.928 43.478 0.00 0.00 0.00 3.08
4681 4864 3.770388 TGGTATGACCTAACCAACGATCA 59.230 43.478 0.00 0.00 42.74 2.92
4691 4874 2.022820 TGGCTAGGGTGGTATGACCTAA 60.023 50.000 0.00 0.00 39.58 2.69
4810 4993 4.276678 TCTGCCAACATGTCAAGAGAAAAG 59.723 41.667 0.00 0.00 0.00 2.27
4822 5005 1.100510 CATCCCACTCTGCCAACATG 58.899 55.000 0.00 0.00 0.00 3.21
4831 5014 6.566079 TCATTGAATAACTCATCCCACTCT 57.434 37.500 0.00 0.00 32.78 3.24
4911 5094 8.603304 AGGACTTGACAGTGTAAATACCTTTAT 58.397 33.333 10.83 0.00 31.22 1.40
5033 5216 5.646360 TCAATAGCTTGTTGTTAGCCCTAAC 59.354 40.000 10.48 10.48 39.47 2.34
5037 5220 3.128764 GGTCAATAGCTTGTTGTTAGCCC 59.871 47.826 0.00 0.00 39.47 5.19
5044 5227 7.714377 AGATTATCTCTGGTCAATAGCTTGTTG 59.286 37.037 0.00 0.00 31.34 3.33
5090 5273 5.625150 ACAGAAAAGACAGGAAGCACTATT 58.375 37.500 0.00 0.00 0.00 1.73
5094 5277 4.212214 CACTACAGAAAAGACAGGAAGCAC 59.788 45.833 0.00 0.00 0.00 4.40
5162 5345 4.187694 CCAATCACTCTCCAAAGCTCTAC 58.812 47.826 0.00 0.00 0.00 2.59
5218 5401 6.295349 GGGACCACCATTCTAGTATGTCATAG 60.295 46.154 8.36 0.00 39.85 2.23
5259 5442 4.217118 CAGAGTGTAAAAGGCAATCTGCTT 59.783 41.667 9.27 0.00 46.80 3.91
5433 5618 0.110486 ACTCCAGTTTCCGCACCATT 59.890 50.000 0.00 0.00 0.00 3.16
5445 5630 4.156477 GGGATCTTGCTATCTACTCCAGT 58.844 47.826 0.00 0.00 0.00 4.00
5485 5670 2.844839 GCCCTAGCCAGGATCCGT 60.845 66.667 5.98 0.00 45.91 4.69
5522 5707 6.921486 ATGAATCATCACTCTCTCATAGCT 57.079 37.500 0.00 0.00 38.69 3.32
5539 5724 6.150140 GGGGAGCTACAACAATCATATGAATC 59.850 42.308 9.99 0.00 0.00 2.52
5540 5725 6.006449 GGGGAGCTACAACAATCATATGAAT 58.994 40.000 9.99 0.00 0.00 2.57
5546 5740 3.010584 ACAAGGGGAGCTACAACAATCAT 59.989 43.478 0.00 0.00 0.00 2.45
5576 5780 9.517609 ACTACTTAGAGAATGTAAAATGTAGCG 57.482 33.333 0.00 0.00 29.11 4.26
5594 5798 3.791973 CAGGCCTCTGTCACTACTTAG 57.208 52.381 0.00 0.00 36.30 2.18
5613 5821 5.652994 AAAGTAAACAGAACAAGCCAACA 57.347 34.783 0.00 0.00 0.00 3.33
5614 5822 5.220397 GCAAAAGTAAACAGAACAAGCCAAC 60.220 40.000 0.00 0.00 0.00 3.77
5615 5823 4.867608 GCAAAAGTAAACAGAACAAGCCAA 59.132 37.500 0.00 0.00 0.00 4.52
5619 5827 5.043248 CCCAGCAAAAGTAAACAGAACAAG 58.957 41.667 0.00 0.00 0.00 3.16
5620 5828 4.142049 CCCCAGCAAAAGTAAACAGAACAA 60.142 41.667 0.00 0.00 0.00 2.83
5622 5830 3.798889 GCCCCAGCAAAAGTAAACAGAAC 60.799 47.826 0.00 0.00 39.53 3.01
5623 5831 2.364002 GCCCCAGCAAAAGTAAACAGAA 59.636 45.455 0.00 0.00 39.53 3.02
5624 5832 1.960689 GCCCCAGCAAAAGTAAACAGA 59.039 47.619 0.00 0.00 39.53 3.41
5625 5833 2.438868 GCCCCAGCAAAAGTAAACAG 57.561 50.000 0.00 0.00 39.53 3.16
5671 5884 4.435651 GCAAGGTTCAGTACGATTACAAGC 60.436 45.833 0.00 0.00 0.00 4.01
5679 5892 1.414919 ACCAAGCAAGGTTCAGTACGA 59.585 47.619 0.00 0.00 39.34 3.43
5694 5908 2.892852 TGGATTGCCAAGAGAAACCAAG 59.107 45.455 0.00 0.00 42.49 3.61
5798 6012 5.792741 TGGCCAAGTTTATGGAGAAAATTG 58.207 37.500 0.61 1.07 43.54 2.32
5925 6139 6.209192 TGGTTAATTACTACGGTTCTCAGTCA 59.791 38.462 0.00 0.00 0.00 3.41
5930 6144 6.700520 CCTCATGGTTAATTACTACGGTTCTC 59.299 42.308 0.00 0.00 0.00 2.87
5952 6166 0.668535 AAGCCGCAACAAGAAACCTC 59.331 50.000 0.00 0.00 0.00 3.85
5955 6169 3.555518 CTTAGAAGCCGCAACAAGAAAC 58.444 45.455 0.00 0.00 0.00 2.78
5986 6200 1.080366 CTGCCACAATTGTGCGCAT 60.080 52.632 34.52 6.67 44.71 4.73
6006 6220 6.610830 TCAAAGGGTTTTTGAAGAGATACCT 58.389 36.000 0.19 0.00 35.69 3.08
6007 6221 6.894339 TCAAAGGGTTTTTGAAGAGATACC 57.106 37.500 0.19 0.00 35.69 2.73
6008 6222 7.394641 AGGATCAAAGGGTTTTTGAAGAGATAC 59.605 37.037 6.44 0.00 41.16 2.24
6009 6223 7.470192 AGGATCAAAGGGTTTTTGAAGAGATA 58.530 34.615 6.44 0.00 41.16 1.98
6010 6224 6.318112 AGGATCAAAGGGTTTTTGAAGAGAT 58.682 36.000 6.44 0.00 41.16 2.75
6011 6225 5.705400 AGGATCAAAGGGTTTTTGAAGAGA 58.295 37.500 6.44 0.00 41.16 3.10
6012 6226 5.772169 AGAGGATCAAAGGGTTTTTGAAGAG 59.228 40.000 6.44 0.00 41.16 2.85
6015 6229 6.136155 AGAAGAGGATCAAAGGGTTTTTGAA 58.864 36.000 6.44 0.00 41.16 2.69
6016 6230 5.705400 AGAAGAGGATCAAAGGGTTTTTGA 58.295 37.500 4.97 4.97 41.91 2.69
6017 6231 7.524717 TTAGAAGAGGATCAAAGGGTTTTTG 57.475 36.000 0.00 0.00 37.82 2.44
6018 6232 7.950124 TCATTAGAAGAGGATCAAAGGGTTTTT 59.050 33.333 0.00 0.00 37.82 1.94
6059 6274 5.104776 TCAGTCATTAGAAGGGGATTGTCTG 60.105 44.000 0.00 0.00 0.00 3.51
6065 6280 4.384647 GCACTTCAGTCATTAGAAGGGGAT 60.385 45.833 6.56 0.00 43.72 3.85
6069 6284 5.426504 AGATGCACTTCAGTCATTAGAAGG 58.573 41.667 7.05 0.00 44.20 3.46
6080 6295 5.105063 TCGAGAACATAAGATGCACTTCAG 58.895 41.667 5.04 3.17 39.72 3.02
6098 6313 4.894784 AGCACCTTTCAAATAGTTCGAGA 58.105 39.130 0.00 0.00 0.00 4.04
6111 6326 9.331282 AGTTCATAGAATTATGTAGCACCTTTC 57.669 33.333 0.00 0.00 38.25 2.62
6126 6341 8.743085 ATGACACTTTGCATAGTTCATAGAAT 57.257 30.769 21.44 8.59 30.87 2.40
6127 6342 8.565896 AATGACACTTTGCATAGTTCATAGAA 57.434 30.769 22.27 6.94 31.63 2.10
6128 6343 9.665719 TTAATGACACTTTGCATAGTTCATAGA 57.334 29.630 22.27 15.80 31.63 1.98
6132 6347 8.109705 ACATTAATGACACTTTGCATAGTTCA 57.890 30.769 22.16 17.40 0.00 3.18
6141 6356 6.402550 CCTTCGAGGACATTAATGACACTTTG 60.403 42.308 22.16 11.97 37.67 2.77
6236 6451 7.284716 TGTCATCTAGGCTCTCGAACTATTTTA 59.715 37.037 0.00 0.00 0.00 1.52
6238 6453 5.594725 TGTCATCTAGGCTCTCGAACTATTT 59.405 40.000 0.00 0.00 0.00 1.40
6241 6456 3.878103 GTGTCATCTAGGCTCTCGAACTA 59.122 47.826 0.00 0.00 0.00 2.24
6242 6457 2.685897 GTGTCATCTAGGCTCTCGAACT 59.314 50.000 0.00 0.00 0.00 3.01
6243 6458 2.423892 TGTGTCATCTAGGCTCTCGAAC 59.576 50.000 0.00 0.00 0.00 3.95
6244 6459 2.423892 GTGTGTCATCTAGGCTCTCGAA 59.576 50.000 0.00 0.00 0.00 3.71
6245 6460 2.017782 GTGTGTCATCTAGGCTCTCGA 58.982 52.381 0.00 0.00 0.00 4.04
6246 6461 1.745653 TGTGTGTCATCTAGGCTCTCG 59.254 52.381 0.00 0.00 0.00 4.04
6250 6465 4.141642 TGCAATATGTGTGTCATCTAGGCT 60.142 41.667 0.00 0.00 37.91 4.58
6256 6471 4.494690 CCGAAGTGCAATATGTGTGTCATC 60.495 45.833 0.00 0.00 37.91 2.92
6278 6493 6.983906 ATGAAAATAATCATCCAACTCCCC 57.016 37.500 0.00 0.00 35.07 4.81
6279 6494 8.697507 AGTATGAAAATAATCATCCAACTCCC 57.302 34.615 0.00 0.00 40.44 4.30
6293 6508 6.989437 CGCAAGTCTTCGAAGTATGAAAATA 58.011 36.000 23.85 0.00 0.00 1.40
6336 6551 1.448540 GTGCATCACAGGTCCTCGG 60.449 63.158 0.00 0.00 34.08 4.63
6338 6553 1.002430 TGAAGTGCATCACAGGTCCTC 59.998 52.381 0.00 0.00 36.74 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.