Multiple sequence alignment - TraesCS5B01G276700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G276700 chr5B 100.000 4740 0 0 1 4740 462308286 462313025 0.000000e+00 8754.0
1 TraesCS5B01G276700 chr5B 85.735 1402 152 24 1431 2797 462325304 462326692 0.000000e+00 1437.0
2 TraesCS5B01G276700 chr5B 82.603 730 91 24 2817 3521 462326783 462327501 3.140000e-171 612.0
3 TraesCS5B01G276700 chr5B 82.812 512 65 15 1443 1942 461580655 461581155 2.030000e-118 436.0
4 TraesCS5B01G276700 chr5B 86.992 369 38 6 1010 1371 461580145 461580510 1.590000e-109 407.0
5 TraesCS5B01G276700 chr5B 83.924 367 32 13 381 745 462322539 462322880 4.570000e-85 326.0
6 TraesCS5B01G276700 chr5B 89.200 250 20 4 497 744 461579088 461579332 5.960000e-79 305.0
7 TraesCS5B01G276700 chr5B 84.641 306 36 7 954 1254 462323039 462323338 1.290000e-75 294.0
8 TraesCS5B01G276700 chr5B 90.476 84 8 0 637 720 461642581 461642498 1.390000e-20 111.0
9 TraesCS5B01G276700 chr5D 96.941 3269 62 11 346 3597 384974786 384978033 0.000000e+00 5448.0
10 TraesCS5B01G276700 chr5D 83.991 1368 171 30 1431 2771 384739165 384737819 0.000000e+00 1269.0
11 TraesCS5B01G276700 chr5D 87.067 866 84 9 1431 2274 384981701 384982560 0.000000e+00 953.0
12 TraesCS5B01G276700 chr5D 88.235 510 57 3 2817 3325 384737718 384737211 1.460000e-169 606.0
13 TraesCS5B01G276700 chr5D 84.854 515 58 12 1438 1942 384683560 384683056 7.080000e-138 501.0
14 TraesCS5B01G276700 chr5D 82.435 501 74 9 1444 1938 384784396 384783904 4.380000e-115 425.0
15 TraesCS5B01G276700 chr5D 88.162 321 21 8 20 325 384956538 384956856 2.700000e-97 366.0
16 TraesCS5B01G276700 chr5D 88.158 304 30 3 1017 1319 384683970 384683672 1.620000e-94 357.0
17 TraesCS5B01G276700 chr5D 81.007 437 59 15 835 1254 384981203 384981632 4.570000e-85 326.0
18 TraesCS5B01G276700 chr5D 88.448 277 16 8 497 771 384684398 384684136 2.130000e-83 320.0
19 TraesCS5B01G276700 chr5D 80.253 395 38 17 396 785 384980834 384981193 1.310000e-65 261.0
20 TraesCS5B01G276700 chr5D 92.308 104 6 1 617 720 384785954 384785853 3.820000e-31 147.0
21 TraesCS5B01G276700 chr5D 100.000 36 0 0 1930 1965 384738630 384738595 3.060000e-07 67.6
22 TraesCS5B01G276700 chr5A 95.858 3259 72 21 362 3597 486747692 486750910 0.000000e+00 5212.0
23 TraesCS5B01G276700 chr5A 97.151 1053 27 3 3690 4740 492684277 492685328 0.000000e+00 1775.0
24 TraesCS5B01G276700 chr5A 85.643 1400 155 22 1431 2797 486757021 486758407 0.000000e+00 1430.0
25 TraesCS5B01G276700 chr5A 91.176 1054 85 8 3689 4740 610090023 610088976 0.000000e+00 1424.0
26 TraesCS5B01G276700 chr5A 82.759 725 86 24 2817 3521 486758498 486759203 1.130000e-170 610.0
27 TraesCS5B01G276700 chr5A 84.351 524 61 14 1430 1942 485534213 485534726 1.180000e-135 494.0
28 TraesCS5B01G276700 chr5A 86.041 394 29 11 1 370 486728733 486729124 2.660000e-107 399.0
29 TraesCS5B01G276700 chr5A 89.069 247 16 7 497 741 485533124 485533361 3.590000e-76 296.0
30 TraesCS5B01G276700 chr5A 79.412 442 60 19 835 1254 486756520 486756952 2.790000e-72 283.0
31 TraesCS5B01G276700 chr5A 91.270 126 10 1 1247 1371 485533951 485534076 2.270000e-38 171.0
32 TraesCS5B01G276700 chr5A 84.431 167 15 4 635 800 486756358 486756514 2.280000e-33 154.0
33 TraesCS5B01G276700 chr4A 94.886 1056 48 5 3688 4740 656746993 656745941 0.000000e+00 1646.0
34 TraesCS5B01G276700 chr6D 91.168 1053 87 6 3690 4740 329080283 329079235 0.000000e+00 1424.0
35 TraesCS5B01G276700 chr4D 90.695 1064 90 9 3679 4740 433628413 433629469 0.000000e+00 1408.0
36 TraesCS5B01G276700 chr7D 90.788 1053 92 5 3690 4740 234159906 234160955 0.000000e+00 1402.0
37 TraesCS5B01G276700 chr2B 90.823 1057 83 11 3690 4740 666546865 666545817 0.000000e+00 1402.0
38 TraesCS5B01G276700 chr3A 90.598 1053 94 5 3690 4740 644721249 644722298 0.000000e+00 1391.0
39 TraesCS5B01G276700 chr7B 90.539 1057 86 11 3690 4740 49587642 49586594 0.000000e+00 1386.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G276700 chr5B 462308286 462313025 4739 False 8754.000000 8754 100.000000 1 4740 1 chr5B.!!$F1 4739
1 TraesCS5B01G276700 chr5B 462322539 462327501 4962 False 667.250000 1437 84.225750 381 3521 4 chr5B.!!$F3 3140
2 TraesCS5B01G276700 chr5B 461579088 461581155 2067 False 382.666667 436 86.334667 497 1942 3 chr5B.!!$F2 1445
3 TraesCS5B01G276700 chr5D 384974786 384982560 7774 False 1747.000000 5448 86.317000 346 3597 4 chr5D.!!$F2 3251
4 TraesCS5B01G276700 chr5D 384737211 384739165 1954 True 647.533333 1269 90.742000 1431 3325 3 chr5D.!!$R2 1894
5 TraesCS5B01G276700 chr5D 384683056 384684398 1342 True 392.666667 501 87.153333 497 1942 3 chr5D.!!$R1 1445
6 TraesCS5B01G276700 chr5D 384783904 384785954 2050 True 286.000000 425 87.371500 617 1938 2 chr5D.!!$R3 1321
7 TraesCS5B01G276700 chr5A 486747692 486750910 3218 False 5212.000000 5212 95.858000 362 3597 1 chr5A.!!$F2 3235
8 TraesCS5B01G276700 chr5A 492684277 492685328 1051 False 1775.000000 1775 97.151000 3690 4740 1 chr5A.!!$F3 1050
9 TraesCS5B01G276700 chr5A 610088976 610090023 1047 True 1424.000000 1424 91.176000 3689 4740 1 chr5A.!!$R1 1051
10 TraesCS5B01G276700 chr5A 486756358 486759203 2845 False 619.250000 1430 83.061250 635 3521 4 chr5A.!!$F5 2886
11 TraesCS5B01G276700 chr5A 485533124 485534726 1602 False 320.333333 494 88.230000 497 1942 3 chr5A.!!$F4 1445
12 TraesCS5B01G276700 chr4A 656745941 656746993 1052 True 1646.000000 1646 94.886000 3688 4740 1 chr4A.!!$R1 1052
13 TraesCS5B01G276700 chr6D 329079235 329080283 1048 True 1424.000000 1424 91.168000 3690 4740 1 chr6D.!!$R1 1050
14 TraesCS5B01G276700 chr4D 433628413 433629469 1056 False 1408.000000 1408 90.695000 3679 4740 1 chr4D.!!$F1 1061
15 TraesCS5B01G276700 chr7D 234159906 234160955 1049 False 1402.000000 1402 90.788000 3690 4740 1 chr7D.!!$F1 1050
16 TraesCS5B01G276700 chr2B 666545817 666546865 1048 True 1402.000000 1402 90.823000 3690 4740 1 chr2B.!!$R1 1050
17 TraesCS5B01G276700 chr3A 644721249 644722298 1049 False 1391.000000 1391 90.598000 3690 4740 1 chr3A.!!$F1 1050
18 TraesCS5B01G276700 chr7B 49586594 49587642 1048 True 1386.000000 1386 90.539000 3690 4740 1 chr7B.!!$R1 1050

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.031449 GGCTGCTCTAGAACGCTAGG 59.969 60.0 0.00 0.00 43.52 3.02 F
316 317 0.031449 GCTGCTCTAGAACGCTAGGG 59.969 60.0 5.05 5.05 46.16 3.53 F
342 343 0.179171 CGTAGACGTGTCCGCTGAAT 60.179 55.0 0.00 0.00 37.70 2.57 F
350 351 0.916086 TGTCCGCTGAATAATGGGGT 59.084 50.0 0.00 0.00 37.52 4.95 F
1386 2760 1.045407 TTGGCTTCGTAGTCCACTGT 58.955 50.0 5.05 0.00 30.56 3.55 F
2442 6078 0.674581 TGCTTGTGCCGATCTTCTGG 60.675 55.0 0.00 0.00 38.71 3.86 F
3653 7394 0.958091 CAAGAATTGGGTCAACCGCA 59.042 50.0 0.00 0.00 43.94 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 5319 1.202348 CGGTTTTCCTTGCAAGATCCC 59.798 52.381 28.05 16.87 37.95 3.85 R
1928 5538 3.131046 TCGACAAAGAGCTGCATGAGATA 59.869 43.478 1.02 0.00 0.00 1.98 R
2282 5912 9.829507 CTCTTTATCACTTCCAGATTTCTACAT 57.170 33.333 0.00 0.00 0.00 2.29 R
2442 6078 1.234821 TCAAGATTTGGCACCACGTC 58.765 50.000 0.00 0.00 0.00 4.34 R
2518 6154 1.411246 TGTTGCGTAGTTCTGGTGTCT 59.589 47.619 0.00 0.00 0.00 3.41 R
3663 7404 0.896479 ATAAACACCAACGCCACCCC 60.896 55.000 0.00 0.00 0.00 4.95 R
4579 12092 5.127491 TCGTCTTGGACCAACATAAAAAGT 58.873 37.500 1.69 0.00 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.372541 CACACAAAAATTTCATCAAAATACAGC 57.627 29.630 0.00 0.00 36.54 4.40
27 28 8.558700 ACACAAAAATTTCATCAAAATACAGCC 58.441 29.630 0.00 0.00 36.54 4.85
28 29 8.557864 CACAAAAATTTCATCAAAATACAGCCA 58.442 29.630 0.00 0.00 36.54 4.75
29 30 9.287373 ACAAAAATTTCATCAAAATACAGCCAT 57.713 25.926 0.00 0.00 36.54 4.40
30 31 9.549509 CAAAAATTTCATCAAAATACAGCCATG 57.450 29.630 0.00 0.00 36.54 3.66
31 32 8.851541 AAAATTTCATCAAAATACAGCCATGT 57.148 26.923 0.00 0.00 43.76 3.21
32 33 7.837202 AATTTCATCAAAATACAGCCATGTG 57.163 32.000 0.00 0.00 40.79 3.21
33 34 4.987408 TCATCAAAATACAGCCATGTGG 57.013 40.909 0.00 0.00 40.79 4.17
34 35 3.700539 TCATCAAAATACAGCCATGTGGG 59.299 43.478 0.54 0.00 40.79 4.61
35 36 3.448093 TCAAAATACAGCCATGTGGGA 57.552 42.857 0.54 0.00 40.79 4.37
36 37 3.979911 TCAAAATACAGCCATGTGGGAT 58.020 40.909 0.54 0.00 40.79 3.85
37 38 4.352009 TCAAAATACAGCCATGTGGGATT 58.648 39.130 0.54 0.00 40.79 3.01
38 39 4.776837 TCAAAATACAGCCATGTGGGATTT 59.223 37.500 0.54 0.00 40.79 2.17
39 40 5.954752 TCAAAATACAGCCATGTGGGATTTA 59.045 36.000 0.54 0.00 40.79 1.40
40 41 6.438741 TCAAAATACAGCCATGTGGGATTTAA 59.561 34.615 0.54 0.00 40.79 1.52
41 42 7.125507 TCAAAATACAGCCATGTGGGATTTAAT 59.874 33.333 0.54 0.00 40.79 1.40
42 43 7.436320 AAATACAGCCATGTGGGATTTAATT 57.564 32.000 0.54 0.00 40.79 1.40
43 44 7.436320 AATACAGCCATGTGGGATTTAATTT 57.564 32.000 0.54 0.00 40.79 1.82
44 45 5.760484 ACAGCCATGTGGGATTTAATTTT 57.240 34.783 0.54 0.00 38.57 1.82
45 46 6.865834 ACAGCCATGTGGGATTTAATTTTA 57.134 33.333 0.54 0.00 38.57 1.52
46 47 7.251321 ACAGCCATGTGGGATTTAATTTTAA 57.749 32.000 0.54 0.00 38.57 1.52
47 48 7.684529 ACAGCCATGTGGGATTTAATTTTAAA 58.315 30.769 0.54 0.00 38.57 1.52
48 49 8.160106 ACAGCCATGTGGGATTTAATTTTAAAA 58.840 29.630 2.51 2.51 38.57 1.52
49 50 9.007901 CAGCCATGTGGGATTTAATTTTAAAAA 57.992 29.630 4.44 0.00 40.01 1.94
50 51 9.230122 AGCCATGTGGGATTTAATTTTAAAAAG 57.770 29.630 4.44 0.00 40.01 2.27
51 52 7.967854 GCCATGTGGGATTTAATTTTAAAAAGC 59.032 33.333 4.44 0.00 40.01 3.51
52 53 9.007901 CCATGTGGGATTTAATTTTAAAAAGCA 57.992 29.630 4.44 0.00 40.01 3.91
53 54 9.824534 CATGTGGGATTTAATTTTAAAAAGCAC 57.175 29.630 4.44 0.00 36.35 4.40
54 55 8.077836 TGTGGGATTTAATTTTAAAAAGCACG 57.922 30.769 4.44 0.00 36.35 5.34
55 56 7.711339 TGTGGGATTTAATTTTAAAAAGCACGT 59.289 29.630 4.44 0.00 36.35 4.49
56 57 8.218441 GTGGGATTTAATTTTAAAAAGCACGTC 58.782 33.333 4.44 0.33 36.35 4.34
57 58 7.926555 TGGGATTTAATTTTAAAAAGCACGTCA 59.073 29.630 4.44 0.00 36.35 4.35
58 59 8.218441 GGGATTTAATTTTAAAAAGCACGTCAC 58.782 33.333 4.44 0.00 36.35 3.67
59 60 7.942538 GGATTTAATTTTAAAAAGCACGTCACG 59.057 33.333 4.44 0.00 36.35 4.35
60 61 7.966157 TTTAATTTTAAAAAGCACGTCACGA 57.034 28.000 2.91 0.00 30.28 4.35
61 62 7.597643 TTAATTTTAAAAAGCACGTCACGAG 57.402 32.000 2.91 0.00 0.00 4.18
62 63 4.603231 TTTTAAAAAGCACGTCACGAGT 57.397 36.364 2.91 0.00 0.00 4.18
63 64 5.715429 TTTTAAAAAGCACGTCACGAGTA 57.285 34.783 2.91 0.00 0.00 2.59
64 65 5.910637 TTTAAAAAGCACGTCACGAGTAT 57.089 34.783 2.91 0.00 0.00 2.12
65 66 5.910637 TTAAAAAGCACGTCACGAGTATT 57.089 34.783 2.91 0.00 0.00 1.89
66 67 4.385244 AAAAAGCACGTCACGAGTATTC 57.615 40.909 2.91 0.00 0.00 1.75
67 68 1.992170 AAGCACGTCACGAGTATTCC 58.008 50.000 2.91 0.00 0.00 3.01
68 69 0.885879 AGCACGTCACGAGTATTCCA 59.114 50.000 2.91 0.00 0.00 3.53
69 70 1.271379 AGCACGTCACGAGTATTCCAA 59.729 47.619 2.91 0.00 0.00 3.53
70 71 2.094182 AGCACGTCACGAGTATTCCAAT 60.094 45.455 2.91 0.00 0.00 3.16
71 72 2.029244 GCACGTCACGAGTATTCCAATG 59.971 50.000 2.91 0.00 0.00 2.82
72 73 3.507786 CACGTCACGAGTATTCCAATGA 58.492 45.455 2.91 0.00 0.00 2.57
73 74 4.112634 CACGTCACGAGTATTCCAATGAT 58.887 43.478 2.91 0.00 0.00 2.45
74 75 4.026558 CACGTCACGAGTATTCCAATGATG 60.027 45.833 2.91 0.00 0.00 3.07
75 76 4.142249 ACGTCACGAGTATTCCAATGATGA 60.142 41.667 2.91 0.00 0.00 2.92
76 77 4.803613 CGTCACGAGTATTCCAATGATGAA 59.196 41.667 0.00 0.00 0.00 2.57
77 78 5.290885 CGTCACGAGTATTCCAATGATGAAA 59.709 40.000 0.00 0.00 0.00 2.69
78 79 6.183360 CGTCACGAGTATTCCAATGATGAAAA 60.183 38.462 0.00 0.00 0.00 2.29
79 80 6.961554 GTCACGAGTATTCCAATGATGAAAAC 59.038 38.462 0.00 0.00 0.00 2.43
80 81 5.959527 CACGAGTATTCCAATGATGAAAACG 59.040 40.000 0.00 0.00 0.00 3.60
81 82 5.064707 ACGAGTATTCCAATGATGAAAACGG 59.935 40.000 0.00 0.00 0.00 4.44
82 83 5.293324 CGAGTATTCCAATGATGAAAACGGA 59.707 40.000 0.00 0.00 0.00 4.69
83 84 6.017934 CGAGTATTCCAATGATGAAAACGGAT 60.018 38.462 0.00 0.00 0.00 4.18
84 85 7.264373 AGTATTCCAATGATGAAAACGGATC 57.736 36.000 0.00 0.00 0.00 3.36
85 86 7.056635 AGTATTCCAATGATGAAAACGGATCT 58.943 34.615 0.00 0.00 0.00 2.75
86 87 6.780457 ATTCCAATGATGAAAACGGATCTT 57.220 33.333 0.00 0.00 0.00 2.40
87 88 7.880160 ATTCCAATGATGAAAACGGATCTTA 57.120 32.000 0.00 0.00 0.00 2.10
88 89 6.925610 TCCAATGATGAAAACGGATCTTAG 57.074 37.500 0.00 0.00 0.00 2.18
89 90 6.414732 TCCAATGATGAAAACGGATCTTAGT 58.585 36.000 0.00 0.00 0.00 2.24
90 91 6.884295 TCCAATGATGAAAACGGATCTTAGTT 59.116 34.615 0.00 0.00 0.00 2.24
91 92 7.065803 TCCAATGATGAAAACGGATCTTAGTTC 59.934 37.037 0.00 0.00 0.00 3.01
92 93 7.066284 CCAATGATGAAAACGGATCTTAGTTCT 59.934 37.037 0.00 0.00 0.00 3.01
93 94 6.968131 TGATGAAAACGGATCTTAGTTCTG 57.032 37.500 0.00 0.00 0.00 3.02
94 95 6.697395 TGATGAAAACGGATCTTAGTTCTGA 58.303 36.000 6.17 0.00 0.00 3.27
95 96 6.590292 TGATGAAAACGGATCTTAGTTCTGAC 59.410 38.462 6.17 0.00 0.00 3.51
96 97 4.921515 TGAAAACGGATCTTAGTTCTGACG 59.078 41.667 6.17 0.00 0.00 4.35
97 98 4.778534 AAACGGATCTTAGTTCTGACGA 57.221 40.909 6.17 0.00 0.00 4.20
98 99 4.358494 AACGGATCTTAGTTCTGACGAG 57.642 45.455 6.17 0.00 0.00 4.18
99 100 3.607741 ACGGATCTTAGTTCTGACGAGA 58.392 45.455 6.17 0.00 0.00 4.04
100 101 3.623960 ACGGATCTTAGTTCTGACGAGAG 59.376 47.826 6.17 0.00 0.00 3.20
101 102 3.002862 CGGATCTTAGTTCTGACGAGAGG 59.997 52.174 0.00 0.00 0.00 3.69
102 103 4.200874 GGATCTTAGTTCTGACGAGAGGA 58.799 47.826 0.00 0.00 0.00 3.71
103 104 4.825085 GGATCTTAGTTCTGACGAGAGGAT 59.175 45.833 0.00 0.00 0.00 3.24
104 105 5.300792 GGATCTTAGTTCTGACGAGAGGATT 59.699 44.000 0.00 0.00 0.00 3.01
105 106 5.568685 TCTTAGTTCTGACGAGAGGATTG 57.431 43.478 0.00 0.00 0.00 2.67
106 107 5.254115 TCTTAGTTCTGACGAGAGGATTGA 58.746 41.667 0.00 0.00 0.00 2.57
107 108 5.710567 TCTTAGTTCTGACGAGAGGATTGAA 59.289 40.000 0.00 0.00 0.00 2.69
108 109 4.873746 AGTTCTGACGAGAGGATTGAAA 57.126 40.909 0.00 0.00 0.00 2.69
109 110 5.215252 AGTTCTGACGAGAGGATTGAAAA 57.785 39.130 0.00 0.00 0.00 2.29
110 111 5.799213 AGTTCTGACGAGAGGATTGAAAAT 58.201 37.500 0.00 0.00 0.00 1.82
111 112 6.234177 AGTTCTGACGAGAGGATTGAAAATT 58.766 36.000 0.00 0.00 0.00 1.82
112 113 7.386851 AGTTCTGACGAGAGGATTGAAAATTA 58.613 34.615 0.00 0.00 0.00 1.40
113 114 8.043710 AGTTCTGACGAGAGGATTGAAAATTAT 58.956 33.333 0.00 0.00 0.00 1.28
114 115 7.776933 TCTGACGAGAGGATTGAAAATTATG 57.223 36.000 0.00 0.00 0.00 1.90
115 116 6.258727 TCTGACGAGAGGATTGAAAATTATGC 59.741 38.462 0.00 0.00 0.00 3.14
116 117 5.296780 TGACGAGAGGATTGAAAATTATGCC 59.703 40.000 0.00 0.00 0.00 4.40
117 118 5.440610 ACGAGAGGATTGAAAATTATGCCT 58.559 37.500 0.00 0.00 0.00 4.75
118 119 5.888161 ACGAGAGGATTGAAAATTATGCCTT 59.112 36.000 0.00 0.00 0.00 4.35
119 120 6.378280 ACGAGAGGATTGAAAATTATGCCTTT 59.622 34.615 0.00 0.00 0.00 3.11
120 121 7.093771 ACGAGAGGATTGAAAATTATGCCTTTT 60.094 33.333 0.00 0.00 0.00 2.27
121 122 7.761249 CGAGAGGATTGAAAATTATGCCTTTTT 59.239 33.333 0.00 0.00 0.00 1.94
122 123 8.782339 AGAGGATTGAAAATTATGCCTTTTTG 57.218 30.769 0.00 0.00 0.00 2.44
123 124 8.596293 AGAGGATTGAAAATTATGCCTTTTTGA 58.404 29.630 0.00 0.00 0.00 2.69
124 125 9.218440 GAGGATTGAAAATTATGCCTTTTTGAA 57.782 29.630 0.00 0.00 0.00 2.69
125 126 9.743581 AGGATTGAAAATTATGCCTTTTTGAAT 57.256 25.926 0.00 0.00 33.36 2.57
138 139 7.244192 TGCCTTTTTGAATTTTTAAAACCACG 58.756 30.769 0.00 0.00 0.00 4.94
139 140 7.119262 TGCCTTTTTGAATTTTTAAAACCACGA 59.881 29.630 0.00 0.00 0.00 4.35
140 141 7.963465 GCCTTTTTGAATTTTTAAAACCACGAA 59.037 29.630 0.00 0.00 0.00 3.85
141 142 9.995957 CCTTTTTGAATTTTTAAAACCACGAAT 57.004 25.926 0.00 0.00 0.00 3.34
150 151 9.871299 ATTTTTAAAACCACGAATTAAATGCAC 57.129 25.926 0.00 0.00 30.95 4.57
151 152 8.420374 TTTTAAAACCACGAATTAAATGCACA 57.580 26.923 0.00 0.00 30.95 4.57
152 153 8.420374 TTTAAAACCACGAATTAAATGCACAA 57.580 26.923 0.00 0.00 0.00 3.33
153 154 6.523676 AAAACCACGAATTAAATGCACAAG 57.476 33.333 0.00 0.00 0.00 3.16
154 155 5.446143 AACCACGAATTAAATGCACAAGA 57.554 34.783 0.00 0.00 0.00 3.02
155 156 5.046910 ACCACGAATTAAATGCACAAGAG 57.953 39.130 0.00 0.00 0.00 2.85
156 157 3.853671 CCACGAATTAAATGCACAAGAGC 59.146 43.478 0.00 0.00 0.00 4.09
165 166 1.541379 TGCACAAGAGCATGCATTCT 58.459 45.000 21.98 12.27 46.63 2.40
166 167 2.713877 TGCACAAGAGCATGCATTCTA 58.286 42.857 21.98 0.00 46.63 2.10
167 168 2.681344 TGCACAAGAGCATGCATTCTAG 59.319 45.455 21.98 9.51 46.63 2.43
168 169 2.033049 GCACAAGAGCATGCATTCTAGG 59.967 50.000 21.98 12.64 41.65 3.02
169 170 3.276857 CACAAGAGCATGCATTCTAGGT 58.723 45.455 21.98 13.24 0.00 3.08
170 171 3.064958 CACAAGAGCATGCATTCTAGGTG 59.935 47.826 21.98 19.83 0.00 4.00
171 172 3.054875 ACAAGAGCATGCATTCTAGGTGA 60.055 43.478 21.98 0.00 0.00 4.02
172 173 4.135306 CAAGAGCATGCATTCTAGGTGAT 58.865 43.478 21.98 0.00 0.00 3.06
173 174 5.163269 ACAAGAGCATGCATTCTAGGTGATA 60.163 40.000 21.98 0.00 0.00 2.15
174 175 5.149973 AGAGCATGCATTCTAGGTGATAG 57.850 43.478 21.98 0.00 0.00 2.08
175 176 4.592351 AGAGCATGCATTCTAGGTGATAGT 59.408 41.667 21.98 0.00 32.85 2.12
176 177 5.071519 AGAGCATGCATTCTAGGTGATAGTT 59.928 40.000 21.98 0.00 32.85 2.24
177 178 5.061853 AGCATGCATTCTAGGTGATAGTTG 58.938 41.667 21.98 0.00 32.85 3.16
178 179 4.818546 GCATGCATTCTAGGTGATAGTTGT 59.181 41.667 14.21 0.00 32.85 3.32
179 180 5.297776 GCATGCATTCTAGGTGATAGTTGTT 59.702 40.000 14.21 0.00 32.85 2.83
180 181 6.512415 GCATGCATTCTAGGTGATAGTTGTTC 60.512 42.308 14.21 0.00 32.85 3.18
181 182 5.109210 TGCATTCTAGGTGATAGTTGTTCG 58.891 41.667 0.00 0.00 32.85 3.95
182 183 4.508124 GCATTCTAGGTGATAGTTGTTCGG 59.492 45.833 0.00 0.00 32.85 4.30
183 184 4.730949 TTCTAGGTGATAGTTGTTCGGG 57.269 45.455 0.00 0.00 32.85 5.14
184 185 2.429610 TCTAGGTGATAGTTGTTCGGGC 59.570 50.000 0.00 0.00 32.85 6.13
185 186 0.981183 AGGTGATAGTTGTTCGGGCA 59.019 50.000 0.00 0.00 0.00 5.36
186 187 1.559682 AGGTGATAGTTGTTCGGGCAT 59.440 47.619 0.00 0.00 0.00 4.40
187 188 2.026262 AGGTGATAGTTGTTCGGGCATT 60.026 45.455 0.00 0.00 0.00 3.56
188 189 2.752903 GGTGATAGTTGTTCGGGCATTT 59.247 45.455 0.00 0.00 0.00 2.32
189 190 3.942748 GGTGATAGTTGTTCGGGCATTTA 59.057 43.478 0.00 0.00 0.00 1.40
190 191 4.035208 GGTGATAGTTGTTCGGGCATTTAG 59.965 45.833 0.00 0.00 0.00 1.85
191 192 4.634443 GTGATAGTTGTTCGGGCATTTAGT 59.366 41.667 0.00 0.00 0.00 2.24
192 193 5.813672 GTGATAGTTGTTCGGGCATTTAGTA 59.186 40.000 0.00 0.00 0.00 1.82
193 194 5.813672 TGATAGTTGTTCGGGCATTTAGTAC 59.186 40.000 0.00 0.00 0.00 2.73
194 195 4.010667 AGTTGTTCGGGCATTTAGTACA 57.989 40.909 0.00 0.00 0.00 2.90
195 196 3.749609 AGTTGTTCGGGCATTTAGTACAC 59.250 43.478 0.00 0.00 0.00 2.90
196 197 2.702261 TGTTCGGGCATTTAGTACACC 58.298 47.619 0.00 0.00 0.00 4.16
197 198 1.662122 GTTCGGGCATTTAGTACACCG 59.338 52.381 0.00 0.00 42.45 4.94
198 199 0.896923 TCGGGCATTTAGTACACCGT 59.103 50.000 0.00 0.00 41.82 4.83
199 200 1.003851 CGGGCATTTAGTACACCGTG 58.996 55.000 0.00 0.00 36.78 4.94
200 201 1.404449 CGGGCATTTAGTACACCGTGA 60.404 52.381 5.28 0.00 36.78 4.35
201 202 2.702261 GGGCATTTAGTACACCGTGAA 58.298 47.619 5.28 0.00 0.00 3.18
202 203 2.676342 GGGCATTTAGTACACCGTGAAG 59.324 50.000 5.28 0.00 0.00 3.02
203 204 3.592059 GGCATTTAGTACACCGTGAAGA 58.408 45.455 5.28 0.00 0.00 2.87
204 205 3.998341 GGCATTTAGTACACCGTGAAGAA 59.002 43.478 5.28 0.00 0.00 2.52
205 206 4.453136 GGCATTTAGTACACCGTGAAGAAA 59.547 41.667 5.28 0.92 0.00 2.52
206 207 5.049267 GGCATTTAGTACACCGTGAAGAAAA 60.049 40.000 5.28 1.49 0.00 2.29
207 208 6.432107 GCATTTAGTACACCGTGAAGAAAAA 58.568 36.000 5.28 0.15 0.00 1.94
304 305 2.203480 TTTTTGGCCGGCTGCTCT 60.203 55.556 28.56 0.00 40.92 4.09
305 306 1.074072 TTTTTGGCCGGCTGCTCTA 59.926 52.632 28.56 3.02 40.92 2.43
306 307 0.960364 TTTTTGGCCGGCTGCTCTAG 60.960 55.000 28.56 0.00 40.92 2.43
307 308 1.836999 TTTTGGCCGGCTGCTCTAGA 61.837 55.000 28.56 0.00 40.92 2.43
308 309 1.836999 TTTGGCCGGCTGCTCTAGAA 61.837 55.000 28.56 6.80 40.92 2.10
309 310 2.202946 GGCCGGCTGCTCTAGAAC 60.203 66.667 28.56 0.41 40.92 3.01
310 311 2.583593 GCCGGCTGCTCTAGAACG 60.584 66.667 22.15 0.00 36.87 3.95
311 312 2.583593 CCGGCTGCTCTAGAACGC 60.584 66.667 0.00 0.00 0.00 4.84
312 313 2.492090 CGGCTGCTCTAGAACGCT 59.508 61.111 0.00 0.00 0.00 5.07
313 314 1.725557 CCGGCTGCTCTAGAACGCTA 61.726 60.000 0.00 0.00 0.00 4.26
314 315 0.317436 CGGCTGCTCTAGAACGCTAG 60.317 60.000 0.00 0.00 44.48 3.42
315 316 0.031449 GGCTGCTCTAGAACGCTAGG 59.969 60.000 0.00 0.00 43.52 3.02
316 317 0.031449 GCTGCTCTAGAACGCTAGGG 59.969 60.000 5.05 5.05 46.16 3.53
317 318 1.681538 CTGCTCTAGAACGCTAGGGA 58.318 55.000 14.59 0.00 46.30 4.20
318 319 1.606668 CTGCTCTAGAACGCTAGGGAG 59.393 57.143 14.59 0.14 46.30 4.30
319 320 0.312729 GCTCTAGAACGCTAGGGAGC 59.687 60.000 14.59 6.97 46.30 4.70
329 330 4.254721 TAGGGAGCAGCCGTAGAC 57.745 61.111 0.00 0.00 37.63 2.59
330 331 1.822613 TAGGGAGCAGCCGTAGACG 60.823 63.158 0.00 0.00 37.63 4.18
331 332 2.547640 TAGGGAGCAGCCGTAGACGT 62.548 60.000 0.85 0.00 37.63 4.34
332 333 2.202623 GGAGCAGCCGTAGACGTG 60.203 66.667 0.00 0.00 37.74 4.49
333 334 2.567049 GAGCAGCCGTAGACGTGT 59.433 61.111 0.00 0.00 37.74 4.49
334 335 1.514443 GAGCAGCCGTAGACGTGTC 60.514 63.158 0.00 0.00 37.74 3.67
335 336 2.506438 GCAGCCGTAGACGTGTCC 60.506 66.667 0.00 0.00 37.74 4.02
336 337 2.202440 CAGCCGTAGACGTGTCCG 60.202 66.667 0.00 0.00 37.74 4.79
337 338 4.112341 AGCCGTAGACGTGTCCGC 62.112 66.667 0.00 0.00 37.70 5.54
338 339 4.112341 GCCGTAGACGTGTCCGCT 62.112 66.667 0.00 0.00 37.70 5.52
339 340 2.202440 CCGTAGACGTGTCCGCTG 60.202 66.667 0.00 0.00 37.70 5.18
340 341 2.683859 CCGTAGACGTGTCCGCTGA 61.684 63.158 0.00 0.00 37.70 4.26
341 342 1.208358 CGTAGACGTGTCCGCTGAA 59.792 57.895 0.00 0.00 37.70 3.02
342 343 0.179171 CGTAGACGTGTCCGCTGAAT 60.179 55.000 0.00 0.00 37.70 2.57
343 344 1.063027 CGTAGACGTGTCCGCTGAATA 59.937 52.381 0.00 0.00 37.70 1.75
344 345 2.476686 CGTAGACGTGTCCGCTGAATAA 60.477 50.000 0.00 0.00 37.70 1.40
345 346 2.961526 AGACGTGTCCGCTGAATAAT 57.038 45.000 0.00 0.00 37.70 1.28
346 347 2.540515 AGACGTGTCCGCTGAATAATG 58.459 47.619 0.00 0.00 37.70 1.90
347 348 1.593006 GACGTGTCCGCTGAATAATGG 59.407 52.381 0.00 0.00 37.70 3.16
348 349 0.937304 CGTGTCCGCTGAATAATGGG 59.063 55.000 0.00 0.00 0.00 4.00
349 350 1.308998 GTGTCCGCTGAATAATGGGG 58.691 55.000 0.00 0.00 37.59 4.96
350 351 0.916086 TGTCCGCTGAATAATGGGGT 59.084 50.000 0.00 0.00 37.52 4.95
351 352 1.134220 TGTCCGCTGAATAATGGGGTC 60.134 52.381 0.00 0.00 37.52 4.46
352 353 1.141053 GTCCGCTGAATAATGGGGTCT 59.859 52.381 0.00 0.00 37.52 3.85
353 354 2.367567 GTCCGCTGAATAATGGGGTCTA 59.632 50.000 0.00 0.00 37.52 2.59
354 355 3.008049 GTCCGCTGAATAATGGGGTCTAT 59.992 47.826 0.00 0.00 37.52 1.98
386 392 1.534336 TATACGGTGTGTGCGGTGGT 61.534 55.000 0.00 0.00 0.00 4.16
437 443 2.546373 CCCGTGTCTTGTTTCGTTAGGA 60.546 50.000 0.00 0.00 0.00 2.94
615 650 1.387539 CCTGATCTGTGCTCTCGAGA 58.612 55.000 15.70 15.70 0.00 4.04
818 854 6.038271 ACATCTAGTTCAGCACGTTTCTTTTT 59.962 34.615 0.00 0.00 0.00 1.94
954 1476 2.353269 TGTGTCTGCCGTTTACAGTTTG 59.647 45.455 0.00 0.00 36.50 2.93
1010 1953 3.690460 AGTTTTCTTCCATCGGCATCTT 58.310 40.909 0.00 0.00 0.00 2.40
1014 1957 6.208599 AGTTTTCTTCCATCGGCATCTTTTTA 59.791 34.615 0.00 0.00 0.00 1.52
1343 2485 2.103432 TGCTTCAACTTCTTCCCGTGTA 59.897 45.455 0.00 0.00 0.00 2.90
1386 2760 1.045407 TTGGCTTCGTAGTCCACTGT 58.955 50.000 5.05 0.00 30.56 3.55
1754 5319 2.654749 TGTCCATGTGAAGTAGCGAG 57.345 50.000 0.00 0.00 0.00 5.03
1928 5538 4.327680 GAACTTGACCTCCAGCTTATTGT 58.672 43.478 0.00 0.00 0.00 2.71
2282 5912 1.752198 CCACCTGGTTGTCGAGGAA 59.248 57.895 0.00 0.00 41.22 3.36
2442 6078 0.674581 TGCTTGTGCCGATCTTCTGG 60.675 55.000 0.00 0.00 38.71 3.86
2651 6291 5.163385 CCTCCAACGACTATGTATTGGGTTA 60.163 44.000 11.10 0.00 41.67 2.85
2775 6415 3.451178 AGTTGTACATACACCCCTAGCAG 59.549 47.826 0.00 0.00 35.64 4.24
2864 6575 6.544038 TGTTATTGACATTGCCATCTATCG 57.456 37.500 0.00 0.00 32.00 2.92
3521 7262 4.219507 TGCGGTATCATGGTCAAACAAAAT 59.780 37.500 0.00 0.00 0.00 1.82
3617 7358 8.978874 TTTAGAATAATGGTCATGTAGCATGT 57.021 30.769 8.68 4.90 45.52 3.21
3620 7361 8.613060 AGAATAATGGTCATGTAGCATGTAAG 57.387 34.615 8.68 0.00 45.52 2.34
3621 7362 8.432013 AGAATAATGGTCATGTAGCATGTAAGA 58.568 33.333 8.68 0.00 45.52 2.10
3622 7363 8.978874 AATAATGGTCATGTAGCATGTAAGAA 57.021 30.769 8.68 0.00 45.52 2.52
3623 7364 6.683974 AATGGTCATGTAGCATGTAAGAAC 57.316 37.500 8.68 0.49 45.52 3.01
3624 7365 5.420725 TGGTCATGTAGCATGTAAGAACT 57.579 39.130 8.68 0.00 0.00 3.01
3625 7366 6.538945 TGGTCATGTAGCATGTAAGAACTA 57.461 37.500 8.68 0.00 0.00 2.24
3626 7367 6.573434 TGGTCATGTAGCATGTAAGAACTAG 58.427 40.000 8.68 0.00 0.00 2.57
3627 7368 5.986135 GGTCATGTAGCATGTAAGAACTAGG 59.014 44.000 8.68 0.00 0.00 3.02
3628 7369 6.407074 GGTCATGTAGCATGTAAGAACTAGGT 60.407 42.308 8.68 0.00 0.00 3.08
3629 7370 7.042335 GTCATGTAGCATGTAAGAACTAGGTT 58.958 38.462 8.68 0.00 0.00 3.50
3630 7371 7.549488 GTCATGTAGCATGTAAGAACTAGGTTT 59.451 37.037 8.68 0.00 0.00 3.27
3631 7372 8.755028 TCATGTAGCATGTAAGAACTAGGTTTA 58.245 33.333 8.68 0.00 0.00 2.01
3632 7373 9.035607 CATGTAGCATGTAAGAACTAGGTTTAG 57.964 37.037 0.00 0.00 0.00 1.85
3633 7374 8.357290 TGTAGCATGTAAGAACTAGGTTTAGA 57.643 34.615 0.00 0.00 0.00 2.10
3634 7375 8.248945 TGTAGCATGTAAGAACTAGGTTTAGAC 58.751 37.037 0.00 0.00 0.00 2.59
3635 7376 7.241042 AGCATGTAAGAACTAGGTTTAGACA 57.759 36.000 0.00 0.00 0.00 3.41
3636 7377 7.676947 AGCATGTAAGAACTAGGTTTAGACAA 58.323 34.615 0.00 0.00 0.00 3.18
3637 7378 7.819900 AGCATGTAAGAACTAGGTTTAGACAAG 59.180 37.037 0.00 0.00 0.00 3.16
3638 7379 7.817962 GCATGTAAGAACTAGGTTTAGACAAGA 59.182 37.037 0.00 0.00 0.00 3.02
3639 7380 9.706691 CATGTAAGAACTAGGTTTAGACAAGAA 57.293 33.333 0.00 0.00 0.00 2.52
3652 7393 3.792716 CAAGAATTGGGTCAACCGC 57.207 52.632 0.00 0.00 43.94 5.68
3653 7394 0.958091 CAAGAATTGGGTCAACCGCA 59.042 50.000 0.00 0.00 43.94 5.69
3654 7395 0.958822 AAGAATTGGGTCAACCGCAC 59.041 50.000 0.00 0.00 44.64 5.34
3655 7396 1.209127 GAATTGGGTCAACCGCACG 59.791 57.895 0.00 0.00 44.64 5.34
3656 7397 1.228003 AATTGGGTCAACCGCACGA 60.228 52.632 0.00 0.00 44.64 4.35
3657 7398 1.512156 AATTGGGTCAACCGCACGAC 61.512 55.000 0.00 0.00 44.64 4.34
3660 7401 2.737376 GGTCAACCGCACGACCTC 60.737 66.667 7.81 0.00 46.83 3.85
3661 7402 2.338984 GTCAACCGCACGACCTCT 59.661 61.111 0.00 0.00 0.00 3.69
3662 7403 1.733399 GTCAACCGCACGACCTCTC 60.733 63.158 0.00 0.00 0.00 3.20
3663 7404 2.805353 CAACCGCACGACCTCTCG 60.805 66.667 0.00 0.00 46.06 4.04
3664 7405 4.052229 AACCGCACGACCTCTCGG 62.052 66.667 0.00 0.00 44.80 4.63
4414 11700 7.277760 TGTGATGTATTGACAAGATTCTTACCG 59.722 37.037 0.00 0.00 39.59 4.02
4446 11732 4.798882 TGTGGGAACATTAGGAACTTTGT 58.201 39.130 0.00 0.00 46.14 2.83
4579 12092 3.078837 GCGGGTCCAGAATAGAAACAAA 58.921 45.455 0.00 0.00 0.00 2.83
4642 12156 8.040132 CCCAAGAATATCACAAGGCAATAAAAA 58.960 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.372541 GCTGTATTTTGATGAAATTTTTGTGTG 57.627 29.630 0.00 0.00 38.80 3.82
1 2 8.558700 GGCTGTATTTTGATGAAATTTTTGTGT 58.441 29.630 0.00 0.00 38.80 3.72
2 3 8.557864 TGGCTGTATTTTGATGAAATTTTTGTG 58.442 29.630 0.00 0.00 38.80 3.33
4 5 9.549509 CATGGCTGTATTTTGATGAAATTTTTG 57.450 29.630 0.00 0.00 38.80 2.44
5 6 9.287373 ACATGGCTGTATTTTGATGAAATTTTT 57.713 25.926 0.00 0.00 38.80 1.94
6 7 8.723311 CACATGGCTGTATTTTGATGAAATTTT 58.277 29.630 0.00 0.00 38.80 1.82
7 8 7.334921 CCACATGGCTGTATTTTGATGAAATTT 59.665 33.333 0.00 0.00 38.80 1.82
8 9 6.819649 CCACATGGCTGTATTTTGATGAAATT 59.180 34.615 0.00 0.00 38.80 1.82
10 11 5.337410 CCCACATGGCTGTATTTTGATGAAA 60.337 40.000 0.00 0.00 33.14 2.69
11 12 4.160065 CCCACATGGCTGTATTTTGATGAA 59.840 41.667 0.00 0.00 33.14 2.57
12 13 3.700539 CCCACATGGCTGTATTTTGATGA 59.299 43.478 0.00 0.00 33.14 2.92
13 14 3.700539 TCCCACATGGCTGTATTTTGATG 59.299 43.478 0.00 0.00 33.14 3.07
14 15 3.979911 TCCCACATGGCTGTATTTTGAT 58.020 40.909 0.00 0.00 33.14 2.57
15 16 3.448093 TCCCACATGGCTGTATTTTGA 57.552 42.857 0.00 0.00 33.14 2.69
16 17 4.741321 AATCCCACATGGCTGTATTTTG 57.259 40.909 0.00 0.00 33.14 2.44
17 18 6.865834 TTAAATCCCACATGGCTGTATTTT 57.134 33.333 0.00 0.00 33.14 1.82
18 19 7.436320 AATTAAATCCCACATGGCTGTATTT 57.564 32.000 0.00 0.00 33.14 1.40
19 20 7.436320 AAATTAAATCCCACATGGCTGTATT 57.564 32.000 0.00 0.00 33.14 1.89
20 21 7.436320 AAAATTAAATCCCACATGGCTGTAT 57.564 32.000 0.00 0.00 33.14 2.29
21 22 6.865834 AAAATTAAATCCCACATGGCTGTA 57.134 33.333 0.00 0.00 33.14 2.74
22 23 5.760484 AAAATTAAATCCCACATGGCTGT 57.240 34.783 0.00 0.00 35.44 4.40
23 24 8.558973 TTTTAAAATTAAATCCCACATGGCTG 57.441 30.769 0.00 0.00 33.12 4.85
24 25 9.230122 CTTTTTAAAATTAAATCCCACATGGCT 57.770 29.630 0.55 0.00 33.12 4.75
25 26 7.967854 GCTTTTTAAAATTAAATCCCACATGGC 59.032 33.333 0.55 0.00 33.12 4.40
26 27 9.007901 TGCTTTTTAAAATTAAATCCCACATGG 57.992 29.630 0.55 0.00 33.12 3.66
27 28 9.824534 GTGCTTTTTAAAATTAAATCCCACATG 57.175 29.630 0.55 0.00 33.12 3.21
28 29 8.716909 CGTGCTTTTTAAAATTAAATCCCACAT 58.283 29.630 0.55 0.00 33.12 3.21
29 30 7.711339 ACGTGCTTTTTAAAATTAAATCCCACA 59.289 29.630 0.55 4.84 33.12 4.17
30 31 8.078959 ACGTGCTTTTTAAAATTAAATCCCAC 57.921 30.769 0.55 6.25 33.12 4.61
31 32 7.926555 TGACGTGCTTTTTAAAATTAAATCCCA 59.073 29.630 0.55 0.00 33.12 4.37
32 33 8.218441 GTGACGTGCTTTTTAAAATTAAATCCC 58.782 33.333 0.55 0.00 33.12 3.85
33 34 7.942538 CGTGACGTGCTTTTTAAAATTAAATCC 59.057 33.333 0.55 0.00 33.12 3.01
34 35 8.683774 TCGTGACGTGCTTTTTAAAATTAAATC 58.316 29.630 4.40 0.00 33.12 2.17
35 36 8.563289 TCGTGACGTGCTTTTTAAAATTAAAT 57.437 26.923 4.40 0.00 33.12 1.40
36 37 7.697291 ACTCGTGACGTGCTTTTTAAAATTAAA 59.303 29.630 4.40 0.00 0.00 1.52
37 38 7.188157 ACTCGTGACGTGCTTTTTAAAATTAA 58.812 30.769 4.40 0.00 0.00 1.40
38 39 6.717413 ACTCGTGACGTGCTTTTTAAAATTA 58.283 32.000 4.40 0.00 0.00 1.40
39 40 5.575019 ACTCGTGACGTGCTTTTTAAAATT 58.425 33.333 4.40 0.00 0.00 1.82
40 41 5.164606 ACTCGTGACGTGCTTTTTAAAAT 57.835 34.783 4.40 0.00 0.00 1.82
41 42 4.603231 ACTCGTGACGTGCTTTTTAAAA 57.397 36.364 4.40 0.00 0.00 1.52
42 43 5.910637 ATACTCGTGACGTGCTTTTTAAA 57.089 34.783 4.40 0.00 0.00 1.52
43 44 5.107375 GGAATACTCGTGACGTGCTTTTTAA 60.107 40.000 4.40 0.00 0.00 1.52
44 45 4.386652 GGAATACTCGTGACGTGCTTTTTA 59.613 41.667 4.40 0.00 0.00 1.52
45 46 3.185797 GGAATACTCGTGACGTGCTTTTT 59.814 43.478 4.40 0.00 0.00 1.94
46 47 2.735134 GGAATACTCGTGACGTGCTTTT 59.265 45.455 4.40 0.00 0.00 2.27
47 48 2.288579 TGGAATACTCGTGACGTGCTTT 60.289 45.455 4.40 0.00 0.00 3.51
48 49 1.271379 TGGAATACTCGTGACGTGCTT 59.729 47.619 4.40 0.00 0.00 3.91
49 50 0.885879 TGGAATACTCGTGACGTGCT 59.114 50.000 4.40 0.00 0.00 4.40
50 51 1.705256 TTGGAATACTCGTGACGTGC 58.295 50.000 4.40 0.00 0.00 5.34
51 52 3.507786 TCATTGGAATACTCGTGACGTG 58.492 45.455 4.40 4.96 0.00 4.49
52 53 3.861276 TCATTGGAATACTCGTGACGT 57.139 42.857 4.40 0.00 0.00 4.34
53 54 4.359706 TCATCATTGGAATACTCGTGACG 58.640 43.478 0.00 0.00 0.00 4.35
54 55 6.662414 TTTCATCATTGGAATACTCGTGAC 57.338 37.500 0.00 0.00 0.00 3.67
55 56 6.183360 CGTTTTCATCATTGGAATACTCGTGA 60.183 38.462 0.00 0.00 0.00 4.35
56 57 5.959527 CGTTTTCATCATTGGAATACTCGTG 59.040 40.000 0.00 0.00 0.00 4.35
57 58 5.064707 CCGTTTTCATCATTGGAATACTCGT 59.935 40.000 0.00 0.00 0.00 4.18
58 59 5.293324 TCCGTTTTCATCATTGGAATACTCG 59.707 40.000 0.00 0.00 0.00 4.18
59 60 6.677781 TCCGTTTTCATCATTGGAATACTC 57.322 37.500 0.00 0.00 0.00 2.59
60 61 7.056635 AGATCCGTTTTCATCATTGGAATACT 58.943 34.615 0.00 0.00 0.00 2.12
61 62 7.264373 AGATCCGTTTTCATCATTGGAATAC 57.736 36.000 0.00 0.00 0.00 1.89
62 63 7.880160 AAGATCCGTTTTCATCATTGGAATA 57.120 32.000 0.00 0.00 0.00 1.75
63 64 6.780457 AAGATCCGTTTTCATCATTGGAAT 57.220 33.333 0.00 0.00 0.00 3.01
64 65 6.884295 ACTAAGATCCGTTTTCATCATTGGAA 59.116 34.615 0.00 0.00 0.00 3.53
65 66 6.414732 ACTAAGATCCGTTTTCATCATTGGA 58.585 36.000 0.00 0.00 0.00 3.53
66 67 6.683974 ACTAAGATCCGTTTTCATCATTGG 57.316 37.500 0.00 0.00 0.00 3.16
67 68 7.907045 CAGAACTAAGATCCGTTTTCATCATTG 59.093 37.037 0.00 0.00 0.00 2.82
68 69 7.824289 TCAGAACTAAGATCCGTTTTCATCATT 59.176 33.333 0.00 0.00 0.00 2.57
69 70 7.278868 GTCAGAACTAAGATCCGTTTTCATCAT 59.721 37.037 0.00 0.00 0.00 2.45
70 71 6.590292 GTCAGAACTAAGATCCGTTTTCATCA 59.410 38.462 0.00 0.00 0.00 3.07
71 72 6.237595 CGTCAGAACTAAGATCCGTTTTCATC 60.238 42.308 0.00 0.00 0.00 2.92
72 73 5.577164 CGTCAGAACTAAGATCCGTTTTCAT 59.423 40.000 0.00 0.00 0.00 2.57
73 74 4.921515 CGTCAGAACTAAGATCCGTTTTCA 59.078 41.667 0.00 0.00 0.00 2.69
74 75 5.159209 TCGTCAGAACTAAGATCCGTTTTC 58.841 41.667 0.00 0.00 0.00 2.29
75 76 5.048224 TCTCGTCAGAACTAAGATCCGTTTT 60.048 40.000 0.00 0.00 0.00 2.43
76 77 4.458295 TCTCGTCAGAACTAAGATCCGTTT 59.542 41.667 0.00 0.00 0.00 3.60
77 78 4.008330 TCTCGTCAGAACTAAGATCCGTT 58.992 43.478 0.00 0.00 0.00 4.44
78 79 3.607741 TCTCGTCAGAACTAAGATCCGT 58.392 45.455 0.00 0.00 0.00 4.69
79 80 3.002862 CCTCTCGTCAGAACTAAGATCCG 59.997 52.174 0.00 0.00 0.00 4.18
80 81 4.200874 TCCTCTCGTCAGAACTAAGATCC 58.799 47.826 0.00 0.00 0.00 3.36
81 82 6.038825 TCAATCCTCTCGTCAGAACTAAGATC 59.961 42.308 0.00 0.00 0.00 2.75
82 83 5.888724 TCAATCCTCTCGTCAGAACTAAGAT 59.111 40.000 0.00 0.00 0.00 2.40
83 84 5.254115 TCAATCCTCTCGTCAGAACTAAGA 58.746 41.667 0.00 0.00 0.00 2.10
84 85 5.568685 TCAATCCTCTCGTCAGAACTAAG 57.431 43.478 0.00 0.00 0.00 2.18
85 86 5.977489 TTCAATCCTCTCGTCAGAACTAA 57.023 39.130 0.00 0.00 0.00 2.24
86 87 5.977489 TTTCAATCCTCTCGTCAGAACTA 57.023 39.130 0.00 0.00 0.00 2.24
87 88 4.873746 TTTCAATCCTCTCGTCAGAACT 57.126 40.909 0.00 0.00 0.00 3.01
88 89 6.487689 AATTTTCAATCCTCTCGTCAGAAC 57.512 37.500 0.00 0.00 0.00 3.01
89 90 7.201644 GCATAATTTTCAATCCTCTCGTCAGAA 60.202 37.037 0.00 0.00 0.00 3.02
90 91 6.258727 GCATAATTTTCAATCCTCTCGTCAGA 59.741 38.462 0.00 0.00 0.00 3.27
91 92 6.425504 GCATAATTTTCAATCCTCTCGTCAG 58.574 40.000 0.00 0.00 0.00 3.51
92 93 5.296780 GGCATAATTTTCAATCCTCTCGTCA 59.703 40.000 0.00 0.00 0.00 4.35
93 94 5.529060 AGGCATAATTTTCAATCCTCTCGTC 59.471 40.000 0.00 0.00 0.00 4.20
94 95 5.440610 AGGCATAATTTTCAATCCTCTCGT 58.559 37.500 0.00 0.00 0.00 4.18
95 96 6.382869 AAGGCATAATTTTCAATCCTCTCG 57.617 37.500 0.00 0.00 0.00 4.04
96 97 8.876790 CAAAAAGGCATAATTTTCAATCCTCTC 58.123 33.333 0.00 0.00 0.00 3.20
97 98 8.596293 TCAAAAAGGCATAATTTTCAATCCTCT 58.404 29.630 0.00 0.00 0.00 3.69
98 99 8.776376 TCAAAAAGGCATAATTTTCAATCCTC 57.224 30.769 0.00 0.00 0.00 3.71
99 100 9.743581 ATTCAAAAAGGCATAATTTTCAATCCT 57.256 25.926 0.00 0.00 0.00 3.24
112 113 7.912773 CGTGGTTTTAAAAATTCAAAAAGGCAT 59.087 29.630 1.31 0.00 0.00 4.40
113 114 7.119262 TCGTGGTTTTAAAAATTCAAAAAGGCA 59.881 29.630 1.31 0.00 0.00 4.75
114 115 7.465173 TCGTGGTTTTAAAAATTCAAAAAGGC 58.535 30.769 1.31 0.00 0.00 4.35
115 116 9.995957 ATTCGTGGTTTTAAAAATTCAAAAAGG 57.004 25.926 1.31 0.00 0.00 3.11
124 125 9.871299 GTGCATTTAATTCGTGGTTTTAAAAAT 57.129 25.926 1.31 0.00 30.95 1.82
125 126 8.879759 TGTGCATTTAATTCGTGGTTTTAAAAA 58.120 25.926 1.31 0.00 30.95 1.94
126 127 8.420374 TGTGCATTTAATTCGTGGTTTTAAAA 57.580 26.923 0.00 0.00 30.95 1.52
127 128 8.420374 TTGTGCATTTAATTCGTGGTTTTAAA 57.580 26.923 0.00 0.00 31.52 1.52
128 129 7.921214 TCTTGTGCATTTAATTCGTGGTTTTAA 59.079 29.630 0.00 0.00 0.00 1.52
129 130 7.426410 TCTTGTGCATTTAATTCGTGGTTTTA 58.574 30.769 0.00 0.00 0.00 1.52
130 131 6.276847 TCTTGTGCATTTAATTCGTGGTTTT 58.723 32.000 0.00 0.00 0.00 2.43
131 132 5.837437 TCTTGTGCATTTAATTCGTGGTTT 58.163 33.333 0.00 0.00 0.00 3.27
132 133 5.446143 TCTTGTGCATTTAATTCGTGGTT 57.554 34.783 0.00 0.00 0.00 3.67
133 134 4.615912 GCTCTTGTGCATTTAATTCGTGGT 60.616 41.667 0.00 0.00 0.00 4.16
134 135 3.853671 GCTCTTGTGCATTTAATTCGTGG 59.146 43.478 0.00 0.00 0.00 4.94
135 136 4.475028 TGCTCTTGTGCATTTAATTCGTG 58.525 39.130 0.00 0.00 38.12 4.35
136 137 4.764679 TGCTCTTGTGCATTTAATTCGT 57.235 36.364 0.00 0.00 38.12 3.85
147 148 2.033049 CCTAGAATGCATGCTCTTGTGC 59.967 50.000 20.33 1.44 41.61 4.57
148 149 3.064958 CACCTAGAATGCATGCTCTTGTG 59.935 47.826 20.33 18.33 0.00 3.33
149 150 3.054875 TCACCTAGAATGCATGCTCTTGT 60.055 43.478 20.33 13.03 0.00 3.16
150 151 3.538591 TCACCTAGAATGCATGCTCTTG 58.461 45.455 20.33 14.33 0.00 3.02
151 152 3.920231 TCACCTAGAATGCATGCTCTT 57.080 42.857 20.33 12.39 0.00 2.85
152 153 4.592351 ACTATCACCTAGAATGCATGCTCT 59.408 41.667 20.33 16.42 0.00 4.09
153 154 4.892433 ACTATCACCTAGAATGCATGCTC 58.108 43.478 20.33 9.17 0.00 4.26
154 155 4.970860 ACTATCACCTAGAATGCATGCT 57.029 40.909 20.33 13.03 0.00 3.79
155 156 4.818546 ACAACTATCACCTAGAATGCATGC 59.181 41.667 11.82 11.82 0.00 4.06
156 157 6.292542 CGAACAACTATCACCTAGAATGCATG 60.293 42.308 0.00 0.00 0.00 4.06
157 158 5.755375 CGAACAACTATCACCTAGAATGCAT 59.245 40.000 0.00 0.00 0.00 3.96
158 159 5.109210 CGAACAACTATCACCTAGAATGCA 58.891 41.667 0.00 0.00 0.00 3.96
159 160 4.508124 CCGAACAACTATCACCTAGAATGC 59.492 45.833 0.00 0.00 0.00 3.56
160 161 5.050490 CCCGAACAACTATCACCTAGAATG 58.950 45.833 0.00 0.00 0.00 2.67
161 162 4.443034 GCCCGAACAACTATCACCTAGAAT 60.443 45.833 0.00 0.00 0.00 2.40
162 163 3.118884 GCCCGAACAACTATCACCTAGAA 60.119 47.826 0.00 0.00 0.00 2.10
163 164 2.429610 GCCCGAACAACTATCACCTAGA 59.570 50.000 0.00 0.00 0.00 2.43
164 165 2.167693 TGCCCGAACAACTATCACCTAG 59.832 50.000 0.00 0.00 0.00 3.02
165 166 2.181125 TGCCCGAACAACTATCACCTA 58.819 47.619 0.00 0.00 0.00 3.08
166 167 0.981183 TGCCCGAACAACTATCACCT 59.019 50.000 0.00 0.00 0.00 4.00
167 168 2.038387 ATGCCCGAACAACTATCACC 57.962 50.000 0.00 0.00 0.00 4.02
168 169 4.634443 ACTAAATGCCCGAACAACTATCAC 59.366 41.667 0.00 0.00 0.00 3.06
169 170 4.839121 ACTAAATGCCCGAACAACTATCA 58.161 39.130 0.00 0.00 0.00 2.15
170 171 5.813672 TGTACTAAATGCCCGAACAACTATC 59.186 40.000 0.00 0.00 0.00 2.08
171 172 5.583457 GTGTACTAAATGCCCGAACAACTAT 59.417 40.000 0.00 0.00 0.00 2.12
172 173 4.931002 GTGTACTAAATGCCCGAACAACTA 59.069 41.667 0.00 0.00 0.00 2.24
173 174 3.749609 GTGTACTAAATGCCCGAACAACT 59.250 43.478 0.00 0.00 0.00 3.16
174 175 3.120095 GGTGTACTAAATGCCCGAACAAC 60.120 47.826 0.00 0.00 0.00 3.32
175 176 3.075884 GGTGTACTAAATGCCCGAACAA 58.924 45.455 0.00 0.00 0.00 2.83
176 177 2.702261 GGTGTACTAAATGCCCGAACA 58.298 47.619 0.00 0.00 0.00 3.18
177 178 1.662122 CGGTGTACTAAATGCCCGAAC 59.338 52.381 0.00 0.00 37.66 3.95
178 179 1.275856 ACGGTGTACTAAATGCCCGAA 59.724 47.619 2.57 0.00 38.75 4.30
179 180 0.896923 ACGGTGTACTAAATGCCCGA 59.103 50.000 2.57 0.00 38.75 5.14
180 181 1.003851 CACGGTGTACTAAATGCCCG 58.996 55.000 0.00 0.00 41.09 6.13
181 182 2.389962 TCACGGTGTACTAAATGCCC 57.610 50.000 8.17 0.00 0.00 5.36
182 183 3.592059 TCTTCACGGTGTACTAAATGCC 58.408 45.455 8.17 0.00 0.00 4.40
183 184 5.600908 TTTCTTCACGGTGTACTAAATGC 57.399 39.130 8.17 0.00 0.00 3.56
287 288 0.960364 CTAGAGCAGCCGGCCAAAAA 60.960 55.000 26.15 3.54 46.50 1.94
288 289 1.377202 CTAGAGCAGCCGGCCAAAA 60.377 57.895 26.15 2.90 46.50 2.44
289 290 1.836999 TTCTAGAGCAGCCGGCCAAA 61.837 55.000 26.15 2.96 46.50 3.28
290 291 2.290287 TTCTAGAGCAGCCGGCCAA 61.290 57.895 26.15 0.84 46.50 4.52
291 292 2.683572 TTCTAGAGCAGCCGGCCA 60.684 61.111 26.15 0.01 46.50 5.36
292 293 2.202946 GTTCTAGAGCAGCCGGCC 60.203 66.667 26.15 9.10 46.50 6.13
293 294 2.583593 CGTTCTAGAGCAGCCGGC 60.584 66.667 21.89 21.89 45.30 6.13
294 295 1.725557 TAGCGTTCTAGAGCAGCCGG 61.726 60.000 15.67 0.00 35.48 6.13
295 296 0.317436 CTAGCGTTCTAGAGCAGCCG 60.317 60.000 15.67 6.63 43.95 5.52
296 297 0.031449 CCTAGCGTTCTAGAGCAGCC 59.969 60.000 15.67 1.65 43.95 4.85
297 298 0.031449 CCCTAGCGTTCTAGAGCAGC 59.969 60.000 7.41 10.59 43.95 5.25
298 299 1.606668 CTCCCTAGCGTTCTAGAGCAG 59.393 57.143 7.41 1.28 43.95 4.24
299 300 1.681538 CTCCCTAGCGTTCTAGAGCA 58.318 55.000 7.41 0.00 43.95 4.26
300 301 0.312729 GCTCCCTAGCGTTCTAGAGC 59.687 60.000 0.00 0.00 43.95 4.09
311 312 1.787057 CGTCTACGGCTGCTCCCTAG 61.787 65.000 0.00 0.00 35.37 3.02
312 313 1.822613 CGTCTACGGCTGCTCCCTA 60.823 63.158 0.00 0.00 35.37 3.53
313 314 3.141488 CGTCTACGGCTGCTCCCT 61.141 66.667 0.00 0.00 35.37 4.20
314 315 3.450115 ACGTCTACGGCTGCTCCC 61.450 66.667 7.50 0.00 44.95 4.30
315 316 2.202623 CACGTCTACGGCTGCTCC 60.203 66.667 7.50 0.00 44.95 4.70
316 317 1.514443 GACACGTCTACGGCTGCTC 60.514 63.158 7.50 0.00 44.95 4.26
317 318 2.567049 GACACGTCTACGGCTGCT 59.433 61.111 7.50 0.00 44.95 4.24
318 319 2.506438 GGACACGTCTACGGCTGC 60.506 66.667 7.50 0.00 44.95 5.25
319 320 2.202440 CGGACACGTCTACGGCTG 60.202 66.667 7.50 0.00 44.95 4.85
320 321 4.112341 GCGGACACGTCTACGGCT 62.112 66.667 7.50 0.00 44.95 5.52
321 322 4.112341 AGCGGACACGTCTACGGC 62.112 66.667 7.50 2.94 44.95 5.68
322 323 2.191354 TTCAGCGGACACGTCTACGG 62.191 60.000 7.50 0.00 44.95 4.02
323 324 0.179171 ATTCAGCGGACACGTCTACG 60.179 55.000 0.04 0.04 43.45 3.51
324 325 2.838386 TATTCAGCGGACACGTCTAC 57.162 50.000 0.00 0.00 43.45 2.59
325 326 3.490249 CCATTATTCAGCGGACACGTCTA 60.490 47.826 0.00 0.00 43.45 2.59
326 327 2.540515 CATTATTCAGCGGACACGTCT 58.459 47.619 0.00 0.00 43.45 4.18
327 328 1.593006 CCATTATTCAGCGGACACGTC 59.407 52.381 0.00 0.00 43.45 4.34
328 329 1.651987 CCATTATTCAGCGGACACGT 58.348 50.000 0.00 0.00 43.45 4.49
329 330 0.937304 CCCATTATTCAGCGGACACG 59.063 55.000 0.00 0.00 44.63 4.49
330 331 1.308998 CCCCATTATTCAGCGGACAC 58.691 55.000 0.00 0.00 0.00 3.67
331 332 0.916086 ACCCCATTATTCAGCGGACA 59.084 50.000 0.00 0.00 0.00 4.02
332 333 1.141053 AGACCCCATTATTCAGCGGAC 59.859 52.381 0.00 0.00 0.00 4.79
333 334 1.507140 AGACCCCATTATTCAGCGGA 58.493 50.000 0.00 0.00 0.00 5.54
334 335 3.261897 AGATAGACCCCATTATTCAGCGG 59.738 47.826 0.00 0.00 0.00 5.52
335 336 4.499183 GAGATAGACCCCATTATTCAGCG 58.501 47.826 0.00 0.00 0.00 5.18
336 337 4.499183 CGAGATAGACCCCATTATTCAGC 58.501 47.826 0.00 0.00 0.00 4.26
337 338 4.021104 TGCGAGATAGACCCCATTATTCAG 60.021 45.833 0.00 0.00 0.00 3.02
338 339 3.901222 TGCGAGATAGACCCCATTATTCA 59.099 43.478 0.00 0.00 0.00 2.57
339 340 4.537135 TGCGAGATAGACCCCATTATTC 57.463 45.455 0.00 0.00 0.00 1.75
340 341 4.974645 TTGCGAGATAGACCCCATTATT 57.025 40.909 0.00 0.00 0.00 1.40
341 342 4.974645 TTTGCGAGATAGACCCCATTAT 57.025 40.909 0.00 0.00 0.00 1.28
342 343 4.407621 TCTTTTGCGAGATAGACCCCATTA 59.592 41.667 0.00 0.00 0.00 1.90
343 344 3.199946 TCTTTTGCGAGATAGACCCCATT 59.800 43.478 0.00 0.00 0.00 3.16
344 345 2.771943 TCTTTTGCGAGATAGACCCCAT 59.228 45.455 0.00 0.00 0.00 4.00
345 346 2.184533 TCTTTTGCGAGATAGACCCCA 58.815 47.619 0.00 0.00 0.00 4.96
346 347 2.981859 TCTTTTGCGAGATAGACCCC 57.018 50.000 0.00 0.00 0.00 4.95
347 348 6.308282 CGTATATTCTTTTGCGAGATAGACCC 59.692 42.308 0.00 0.00 0.00 4.46
348 349 6.308282 CCGTATATTCTTTTGCGAGATAGACC 59.692 42.308 0.00 0.00 0.00 3.85
349 350 6.862090 ACCGTATATTCTTTTGCGAGATAGAC 59.138 38.462 0.00 0.00 0.00 2.59
350 351 6.861572 CACCGTATATTCTTTTGCGAGATAGA 59.138 38.462 0.00 0.00 0.00 1.98
351 352 6.641314 ACACCGTATATTCTTTTGCGAGATAG 59.359 38.462 0.00 0.00 0.00 2.08
352 353 6.419710 CACACCGTATATTCTTTTGCGAGATA 59.580 38.462 0.00 0.00 0.00 1.98
353 354 5.234329 CACACCGTATATTCTTTTGCGAGAT 59.766 40.000 0.00 0.00 0.00 2.75
354 355 4.565166 CACACCGTATATTCTTTTGCGAGA 59.435 41.667 0.00 0.00 0.00 4.04
818 854 3.643199 TGGTTATAGGCTGTTGATGCA 57.357 42.857 0.00 0.00 0.00 3.96
954 1476 5.048294 TGCTCTTTTATTCTTCGGGGAAAAC 60.048 40.000 0.00 0.00 0.00 2.43
1010 1953 7.598278 ACACGATGCATTGGTTAGAATTAAAA 58.402 30.769 18.31 0.00 0.00 1.52
1014 1957 6.292865 CGATACACGATGCATTGGTTAGAATT 60.293 38.462 18.31 0.00 45.77 2.17
1195 2153 4.690748 CCGTCACAGTGATATTTGACTTGT 59.309 41.667 6.51 0.00 36.93 3.16
1201 2159 5.005779 GCTAGAACCGTCACAGTGATATTTG 59.994 44.000 6.51 0.00 0.00 2.32
1343 2485 2.867109 AGCACAGAGGTAGCACAATT 57.133 45.000 0.00 0.00 0.00 2.32
1386 2760 5.664457 TGAAAAACACAAACATATGCACCA 58.336 33.333 1.58 0.00 0.00 4.17
1486 5037 8.181904 TGGAAAGGAAAAATAGGATCATATGC 57.818 34.615 0.00 0.00 0.00 3.14
1754 5319 1.202348 CGGTTTTCCTTGCAAGATCCC 59.798 52.381 28.05 16.87 37.95 3.85
1815 5380 6.474751 GGAAATCACATATTTCAAGCTTGAGC 59.525 38.462 27.02 3.76 39.18 4.26
1928 5538 3.131046 TCGACAAAGAGCTGCATGAGATA 59.869 43.478 1.02 0.00 0.00 1.98
2282 5912 9.829507 CTCTTTATCACTTCCAGATTTCTACAT 57.170 33.333 0.00 0.00 0.00 2.29
2442 6078 1.234821 TCAAGATTTGGCACCACGTC 58.765 50.000 0.00 0.00 0.00 4.34
2516 6152 3.068448 TGTTGCGTAGTTCTGGTGTCTAA 59.932 43.478 0.00 0.00 0.00 2.10
2517 6153 2.624364 TGTTGCGTAGTTCTGGTGTCTA 59.376 45.455 0.00 0.00 0.00 2.59
2518 6154 1.411246 TGTTGCGTAGTTCTGGTGTCT 59.589 47.619 0.00 0.00 0.00 3.41
2651 6291 9.574516 GACAAATAATCATAGTCTGGGGTAAAT 57.425 33.333 0.00 0.00 0.00 1.40
2864 6575 3.612955 GCGATCTGGCTCTACCTACATTC 60.613 52.174 0.00 0.00 40.22 2.67
3343 7062 6.258727 CACTTATTCTTGCCGTGTAGAATCAT 59.741 38.462 0.00 0.00 40.55 2.45
3597 7338 8.840321 GTTCTTACATGCTACATGACCATTATT 58.160 33.333 14.17 0.00 0.00 1.40
3598 7339 8.213679 AGTTCTTACATGCTACATGACCATTAT 58.786 33.333 14.17 0.00 0.00 1.28
3599 7340 7.564793 AGTTCTTACATGCTACATGACCATTA 58.435 34.615 14.17 0.00 0.00 1.90
3600 7341 6.418101 AGTTCTTACATGCTACATGACCATT 58.582 36.000 14.17 0.00 0.00 3.16
3601 7342 5.994250 AGTTCTTACATGCTACATGACCAT 58.006 37.500 14.17 0.00 0.00 3.55
3602 7343 5.420725 AGTTCTTACATGCTACATGACCA 57.579 39.130 14.17 0.00 0.00 4.02
3603 7344 5.986135 CCTAGTTCTTACATGCTACATGACC 59.014 44.000 14.17 0.00 0.00 4.02
3604 7345 6.574350 ACCTAGTTCTTACATGCTACATGAC 58.426 40.000 14.17 1.97 0.00 3.06
3605 7346 6.791867 ACCTAGTTCTTACATGCTACATGA 57.208 37.500 14.17 0.00 0.00 3.07
3606 7347 7.849804 AAACCTAGTTCTTACATGCTACATG 57.150 36.000 6.03 6.03 0.00 3.21
3607 7348 8.978472 TCTAAACCTAGTTCTTACATGCTACAT 58.022 33.333 0.00 0.00 0.00 2.29
3608 7349 8.248945 GTCTAAACCTAGTTCTTACATGCTACA 58.751 37.037 0.00 0.00 0.00 2.74
3609 7350 8.248945 TGTCTAAACCTAGTTCTTACATGCTAC 58.751 37.037 0.00 0.00 0.00 3.58
3610 7351 8.357290 TGTCTAAACCTAGTTCTTACATGCTA 57.643 34.615 0.00 0.00 0.00 3.49
3611 7352 7.241042 TGTCTAAACCTAGTTCTTACATGCT 57.759 36.000 0.00 0.00 0.00 3.79
3612 7353 7.817962 TCTTGTCTAAACCTAGTTCTTACATGC 59.182 37.037 0.00 0.00 0.00 4.06
3613 7354 9.706691 TTCTTGTCTAAACCTAGTTCTTACATG 57.293 33.333 0.00 0.00 0.00 3.21
3617 7358 9.720769 CCAATTCTTGTCTAAACCTAGTTCTTA 57.279 33.333 0.00 0.00 0.00 2.10
3618 7359 7.665974 CCCAATTCTTGTCTAAACCTAGTTCTT 59.334 37.037 0.00 0.00 0.00 2.52
3619 7360 7.168905 CCCAATTCTTGTCTAAACCTAGTTCT 58.831 38.462 0.00 0.00 0.00 3.01
3620 7361 6.940867 ACCCAATTCTTGTCTAAACCTAGTTC 59.059 38.462 0.00 0.00 0.00 3.01
3621 7362 6.849151 ACCCAATTCTTGTCTAAACCTAGTT 58.151 36.000 0.00 0.00 0.00 2.24
3622 7363 6.043938 TGACCCAATTCTTGTCTAAACCTAGT 59.956 38.462 0.00 0.00 0.00 2.57
3623 7364 6.472887 TGACCCAATTCTTGTCTAAACCTAG 58.527 40.000 0.00 0.00 0.00 3.02
3624 7365 6.442541 TGACCCAATTCTTGTCTAAACCTA 57.557 37.500 0.00 0.00 0.00 3.08
3625 7366 5.319043 TGACCCAATTCTTGTCTAAACCT 57.681 39.130 0.00 0.00 0.00 3.50
3626 7367 5.278808 GGTTGACCCAATTCTTGTCTAAACC 60.279 44.000 0.00 0.00 31.85 3.27
3627 7368 5.562113 CGGTTGACCCAATTCTTGTCTAAAC 60.562 44.000 0.00 0.00 0.00 2.01
3628 7369 4.517453 CGGTTGACCCAATTCTTGTCTAAA 59.483 41.667 0.00 0.00 0.00 1.85
3629 7370 4.069304 CGGTTGACCCAATTCTTGTCTAA 58.931 43.478 0.00 0.00 0.00 2.10
3630 7371 3.670625 CGGTTGACCCAATTCTTGTCTA 58.329 45.455 0.00 0.00 0.00 2.59
3631 7372 2.504367 CGGTTGACCCAATTCTTGTCT 58.496 47.619 0.00 0.00 0.00 3.41
3632 7373 1.068541 GCGGTTGACCCAATTCTTGTC 60.069 52.381 0.00 0.00 0.00 3.18
3633 7374 0.958822 GCGGTTGACCCAATTCTTGT 59.041 50.000 0.00 0.00 0.00 3.16
3634 7375 0.958091 TGCGGTTGACCCAATTCTTG 59.042 50.000 0.00 0.00 0.00 3.02
3635 7376 0.958822 GTGCGGTTGACCCAATTCTT 59.041 50.000 0.00 0.00 0.00 2.52
3636 7377 1.234615 CGTGCGGTTGACCCAATTCT 61.235 55.000 0.00 0.00 0.00 2.40
3637 7378 1.209127 CGTGCGGTTGACCCAATTC 59.791 57.895 0.00 0.00 0.00 2.17
3638 7379 1.228003 TCGTGCGGTTGACCCAATT 60.228 52.632 0.00 0.00 0.00 2.32
3639 7380 1.964373 GTCGTGCGGTTGACCCAAT 60.964 57.895 0.00 0.00 0.00 3.16
3640 7381 2.589442 GTCGTGCGGTTGACCCAA 60.589 61.111 0.00 0.00 0.00 4.12
3644 7385 1.733399 GAGAGGTCGTGCGGTTGAC 60.733 63.158 0.00 0.00 0.00 3.18
3645 7386 2.649034 GAGAGGTCGTGCGGTTGA 59.351 61.111 0.00 0.00 0.00 3.18
3646 7387 2.805353 CGAGAGGTCGTGCGGTTG 60.805 66.667 0.00 0.00 41.57 3.77
3658 7399 4.760047 CCAACGCCACCCCGAGAG 62.760 72.222 0.00 0.00 0.00 3.20
3663 7404 0.896479 ATAAACACCAACGCCACCCC 60.896 55.000 0.00 0.00 0.00 4.95
3664 7405 1.823797 TATAAACACCAACGCCACCC 58.176 50.000 0.00 0.00 0.00 4.61
3665 7406 5.761165 AATATATAAACACCAACGCCACC 57.239 39.130 0.00 0.00 0.00 4.61
3666 7407 7.922837 AGTAAATATATAAACACCAACGCCAC 58.077 34.615 0.00 0.00 0.00 5.01
3667 7408 9.263538 CTAGTAAATATATAAACACCAACGCCA 57.736 33.333 0.00 0.00 0.00 5.69
4093 7840 6.070995 ACAATATCCCAGTCTTAGAACGAACA 60.071 38.462 0.00 0.00 0.00 3.18
4414 11700 5.357032 CCTAATGTTCCCACAAACTCATACC 59.643 44.000 0.00 0.00 36.16 2.73
4446 11732 7.324388 AGGACGACATTTTAATATGGGGATA 57.676 36.000 10.17 0.00 0.00 2.59
4579 12092 5.127491 TCGTCTTGGACCAACATAAAAAGT 58.873 37.500 1.69 0.00 0.00 2.66
4642 12156 5.768164 TCTGAATGCATGCATCATTGTAGAT 59.232 36.000 32.25 14.29 35.31 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.