Multiple sequence alignment - TraesCS5B01G275300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G275300 chr5B 100.000 4172 0 0 1 4172 461288859 461293030 0.000000e+00 7705.0
1 TraesCS5B01G275300 chr5D 94.033 1106 60 5 2365 3467 384469212 384470314 0.000000e+00 1672.0
2 TraesCS5B01G275300 chr5D 94.146 820 19 6 1726 2539 384467825 384468621 0.000000e+00 1221.0
3 TraesCS5B01G275300 chr5D 92.319 703 26 7 3495 4172 384471235 384471934 0.000000e+00 974.0
4 TraesCS5B01G275300 chr5D 86.713 858 54 21 654 1481 384466991 384467818 0.000000e+00 898.0
5 TraesCS5B01G275300 chr5D 90.967 631 36 12 1 630 384424998 384425608 0.000000e+00 830.0
6 TraesCS5B01G275300 chr5D 92.381 210 14 2 1765 1973 384468618 384468826 8.770000e-77 298.0
7 TraesCS5B01G275300 chr5A 92.979 1111 68 6 2365 3467 485373307 485374415 0.000000e+00 1611.0
8 TraesCS5B01G275300 chr5A 89.843 955 72 18 789 1724 485372069 485373017 0.000000e+00 1203.0
9 TraesCS5B01G275300 chr5A 90.295 711 33 10 3495 4172 485375543 485376250 0.000000e+00 898.0
10 TraesCS5B01G275300 chr5A 93.793 580 34 2 1 579 485371195 485371773 0.000000e+00 870.0
11 TraesCS5B01G275300 chr5A 93.003 343 21 1 1726 2068 485372809 485373148 8.050000e-137 497.0
12 TraesCS5B01G275300 chr5A 76.407 462 78 18 1756 2215 485373155 485373587 1.950000e-53 220.0
13 TraesCS5B01G275300 chr1B 76.873 761 95 41 2376 3121 613947200 613946506 5.130000e-94 355.0
14 TraesCS5B01G275300 chr1B 80.095 422 52 19 1307 1714 613947609 613947206 6.830000e-73 285.0
15 TraesCS5B01G275300 chr1B 88.384 198 19 3 994 1190 613948001 613947807 6.970000e-58 235.0
16 TraesCS5B01G275300 chr2D 88.737 293 21 4 1435 1724 644883523 644883806 8.580000e-92 348.0
17 TraesCS5B01G275300 chr2D 80.523 344 38 7 1726 2055 644883610 644883938 1.940000e-58 237.0
18 TraesCS5B01G275300 chr1D 89.338 272 21 6 920 1187 448279958 448279691 6.680000e-88 335.0
19 TraesCS5B01G275300 chr1D 87.556 225 11 10 1307 1519 448279488 448279269 1.160000e-60 244.0
20 TraesCS5B01G275300 chr1A 90.612 245 18 4 950 1190 544140764 544140521 1.870000e-83 320.0
21 TraesCS5B01G275300 chr1A 93.277 119 7 1 1324 1441 544140253 544140135 1.540000e-39 174.0
22 TraesCS5B01G275300 chr1A 94.444 36 2 0 3222 3257 544139153 544139118 5.830000e-04 56.5
23 TraesCS5B01G275300 chr7B 76.300 654 90 46 3563 4162 199282466 199283108 5.280000e-74 289.0
24 TraesCS5B01G275300 chr7B 82.645 121 21 0 4050 4170 709511167 709511287 1.590000e-19 108.0
25 TraesCS5B01G275300 chr7B 76.296 135 29 2 3761 3892 709510961 709511095 7.480000e-08 69.4
26 TraesCS5B01G275300 chr7A 79.412 442 58 20 3563 3977 239756044 239756479 8.830000e-72 281.0
27 TraesCS5B01G275300 chr7A 79.675 123 21 4 4050 4170 709262113 709262233 7.430000e-13 86.1
28 TraesCS5B01G275300 chr7A 77.037 135 28 2 3761 3892 709261907 709262041 1.610000e-09 75.0
29 TraesCS5B01G275300 chr7D 78.555 443 60 25 3563 3977 227566078 227566513 4.140000e-65 259.0
30 TraesCS5B01G275300 chr7D 81.818 121 22 0 4050 4170 616223399 616223279 7.380000e-18 102.0
31 TraesCS5B01G275300 chr7D 82.258 124 16 4 4050 4170 616252927 616253047 7.380000e-18 102.0
32 TraesCS5B01G275300 chr7D 78.102 137 27 2 3761 3894 616252721 616252857 2.670000e-12 84.2
33 TraesCS5B01G275300 chr7D 77.778 135 27 2 3761 3892 616223605 616223471 3.460000e-11 80.5
34 TraesCS5B01G275300 chr3D 86.784 227 16 5 1502 1724 12176585 12176369 1.500000e-59 241.0
35 TraesCS5B01G275300 chr6D 91.011 178 6 2 1548 1724 28345210 28345042 9.020000e-57 231.0
36 TraesCS5B01G275300 chr6D 90.449 178 7 2 1548 1724 290071278 290071446 4.200000e-55 226.0
37 TraesCS5B01G275300 chr4D 84.286 70 11 0 4093 4162 400218823 400218754 7.480000e-08 69.4
38 TraesCS5B01G275300 chr4A 84.286 70 11 0 4093 4162 58349499 58349430 7.480000e-08 69.4
39 TraesCS5B01G275300 chr4B 84.058 69 11 0 4093 4161 494691879 494691811 2.690000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G275300 chr5B 461288859 461293030 4171 False 7705.000000 7705 100.000000 1 4172 1 chr5B.!!$F1 4171
1 TraesCS5B01G275300 chr5D 384466991 384471934 4943 False 1012.600000 1672 91.918400 654 4172 5 chr5D.!!$F2 3518
2 TraesCS5B01G275300 chr5D 384424998 384425608 610 False 830.000000 830 90.967000 1 630 1 chr5D.!!$F1 629
3 TraesCS5B01G275300 chr5A 485371195 485376250 5055 False 883.166667 1611 89.386667 1 4172 6 chr5A.!!$F1 4171
4 TraesCS5B01G275300 chr1B 613946506 613948001 1495 True 291.666667 355 81.784000 994 3121 3 chr1B.!!$R1 2127
5 TraesCS5B01G275300 chr1D 448279269 448279958 689 True 289.500000 335 88.447000 920 1519 2 chr1D.!!$R1 599
6 TraesCS5B01G275300 chr7B 199282466 199283108 642 False 289.000000 289 76.300000 3563 4162 1 chr7B.!!$F1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 1057 0.107214 CCCGCTAAGGAAATGGCTCA 60.107 55.0 0.0 0.0 45.00 4.26 F
1588 1885 0.109132 GCCTTGTTTTCGATGGCTGG 60.109 55.0 0.0 0.0 40.36 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2695 3780 0.107312 GCTGCACAGGATCTGATGGT 60.107 55.0 0.00 0.00 35.18 3.55 R
3498 5814 0.321387 CGAGGAGCCATAGCATGCAT 60.321 55.0 21.98 8.63 43.56 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 1.206745 AACGTCGTCGCTGTCTGTTG 61.207 55.000 0.00 0.00 41.18 3.33
111 112 2.227388 GCTGTCTGTTGAGGAACAATGG 59.773 50.000 0.00 0.00 41.62 3.16
236 237 6.957920 TCATGTGTTCCTTTCATCTTTTGA 57.042 33.333 0.00 0.00 0.00 2.69
298 299 0.250467 GAGCAGTGTCCAGAAAGGCA 60.250 55.000 0.00 0.00 37.29 4.75
426 428 3.138304 GTGGTGTCACAAATGTCTAGCA 58.862 45.455 5.12 0.00 43.13 3.49
478 480 6.492007 AGAAGTTATGTTCTCGAACGTCTA 57.508 37.500 7.72 0.00 43.94 2.59
482 484 5.180868 AGTTATGTTCTCGAACGTCTAGTGT 59.819 40.000 7.72 0.00 43.94 3.55
496 498 3.942748 GTCTAGTGTAGAGACCAGAGTGG 59.057 52.174 0.00 0.00 38.43 4.00
528 530 3.436704 CGAGCTTGCTTTTCTTCCATGTA 59.563 43.478 0.00 0.00 0.00 2.29
530 532 3.189287 AGCTTGCTTTTCTTCCATGTACG 59.811 43.478 0.00 0.00 0.00 3.67
537 539 5.163943 GCTTTTCTTCCATGTACGAGAGTTC 60.164 44.000 0.00 0.00 46.40 3.01
549 551 4.298103 ACGAGAGTTCCCTTCTGTACTA 57.702 45.455 0.00 0.00 46.40 1.82
555 557 1.471119 TCCCTTCTGTACTAGGCACG 58.529 55.000 0.00 0.00 0.00 5.34
584 586 3.179443 AGTGTTCTAGTGTGTGTGTGG 57.821 47.619 0.00 0.00 0.00 4.17
585 587 1.597663 GTGTTCTAGTGTGTGTGTGGC 59.402 52.381 0.00 0.00 0.00 5.01
586 588 0.859232 GTTCTAGTGTGTGTGTGGCG 59.141 55.000 0.00 0.00 0.00 5.69
587 589 0.878523 TTCTAGTGTGTGTGTGGCGC 60.879 55.000 0.00 0.00 0.00 6.53
588 590 2.657757 CTAGTGTGTGTGTGGCGCG 61.658 63.158 0.00 0.00 0.00 6.86
611 613 3.721791 CGCGTGTGTGTGAATTCATGTAG 60.722 47.826 12.12 1.67 0.00 2.74
716 722 5.786311 ACAAGTGTGAATTGATCAAATGGG 58.214 37.500 13.09 0.00 40.50 4.00
719 725 7.015098 ACAAGTGTGAATTGATCAAATGGGTTA 59.985 33.333 13.09 0.00 40.50 2.85
753 759 5.012239 TGGAGAGAGAAAATGACAAATGGG 58.988 41.667 0.00 0.00 0.00 4.00
764 770 8.476064 AAAATGACAAATGGGGCTTAAATTTT 57.524 26.923 0.00 0.00 0.00 1.82
777 783 7.062605 GGGGCTTAAATTTTCTTTTTAGCGTAC 59.937 37.037 0.00 0.00 40.40 3.67
794 834 6.091123 AGCGTACTGAAGCTTAAATTTACG 57.909 37.500 15.71 15.71 41.52 3.18
795 835 5.865552 AGCGTACTGAAGCTTAAATTTACGA 59.134 36.000 20.75 0.00 41.52 3.43
798 838 8.323140 GCGTACTGAAGCTTAAATTTACGATTA 58.677 33.333 20.75 0.00 34.42 1.75
799 839 9.831054 CGTACTGAAGCTTAAATTTACGATTAG 57.169 33.333 15.25 6.46 34.42 1.73
810 975 6.526566 AATTTACGATTAGGAATCAGCGAC 57.473 37.500 0.00 0.00 37.78 5.19
886 1053 2.341846 TTAGCCCGCTAAGGAAATGG 57.658 50.000 5.04 0.00 45.00 3.16
890 1057 0.107214 CCCGCTAAGGAAATGGCTCA 60.107 55.000 0.00 0.00 45.00 4.26
914 1081 4.096558 GCCCAACGATCGCGCAAA 62.097 61.111 16.60 0.00 42.48 3.68
942 1109 4.519610 GGCCAAGCCCAGAAAGAA 57.480 55.556 0.00 0.00 44.06 2.52
1033 1203 1.566018 CGGCGGCGAAGAAGAAAAGT 61.566 55.000 29.19 0.00 0.00 2.66
1035 1205 1.802365 GGCGGCGAAGAAGAAAAGTAA 59.198 47.619 12.98 0.00 0.00 2.24
1266 1456 3.376918 GCTTGGCTGGGCTTGTCC 61.377 66.667 0.00 0.00 0.00 4.02
1273 1463 2.933287 TGGGCTTGTCCGGGTCAT 60.933 61.111 0.00 0.00 34.94 3.06
1275 1465 2.351276 GGCTTGTCCGGGTCATGT 59.649 61.111 0.00 0.00 0.00 3.21
1354 1640 2.439409 TGGCTGATGAGGAAATGTGTG 58.561 47.619 0.00 0.00 0.00 3.82
1473 1770 2.917933 TCAGGGAGTGTTGTTCAGTTG 58.082 47.619 0.00 0.00 0.00 3.16
1531 1828 2.987232 TCTGCTGCGACTACTCTAGAA 58.013 47.619 0.00 0.00 0.00 2.10
1532 1829 2.939756 TCTGCTGCGACTACTCTAGAAG 59.060 50.000 0.00 0.00 0.00 2.85
1533 1830 2.680841 CTGCTGCGACTACTCTAGAAGT 59.319 50.000 0.00 0.00 42.33 3.01
1534 1831 3.870274 TGCTGCGACTACTCTAGAAGTA 58.130 45.455 0.00 0.54 39.55 2.24
1535 1832 4.259356 TGCTGCGACTACTCTAGAAGTAA 58.741 43.478 0.00 0.00 39.98 2.24
1536 1833 4.094590 TGCTGCGACTACTCTAGAAGTAAC 59.905 45.833 0.00 0.00 39.98 2.50
1537 1834 4.094590 GCTGCGACTACTCTAGAAGTAACA 59.905 45.833 0.00 0.00 39.98 2.41
1538 1835 5.220892 GCTGCGACTACTCTAGAAGTAACAT 60.221 44.000 0.00 0.00 39.98 2.71
1539 1836 6.018098 GCTGCGACTACTCTAGAAGTAACATA 60.018 42.308 0.00 0.00 39.98 2.29
1540 1837 7.479897 TGCGACTACTCTAGAAGTAACATAG 57.520 40.000 0.00 0.00 39.98 2.23
1541 1838 7.270779 TGCGACTACTCTAGAAGTAACATAGA 58.729 38.462 0.00 0.00 39.98 1.98
1542 1839 7.767659 TGCGACTACTCTAGAAGTAACATAGAA 59.232 37.037 0.00 0.00 39.98 2.10
1543 1840 8.776470 GCGACTACTCTAGAAGTAACATAGAAT 58.224 37.037 0.00 0.00 39.98 2.40
1546 1843 9.924010 ACTACTCTAGAAGTAACATAGAATGGT 57.076 33.333 0.00 0.00 39.98 3.55
1558 1855 7.817418 AACATAGAATGGTACAGTGTTTGTT 57.183 32.000 0.00 0.00 43.75 2.83
1559 1856 7.871853 AACATAGAATGGTACAGTGTTTGTTC 58.128 34.615 0.00 1.91 44.79 3.18
1560 1857 7.500892 AACATAGAATGGTACAGTGTTTGTTCA 59.499 33.333 0.00 0.00 44.79 3.18
1564 1861 3.482436 TGGTACAGTGTTTGTTCATCCC 58.518 45.455 0.00 0.00 41.29 3.85
1565 1862 3.117851 TGGTACAGTGTTTGTTCATCCCA 60.118 43.478 0.00 0.00 41.29 4.37
1566 1863 3.502211 GGTACAGTGTTTGTTCATCCCAG 59.498 47.826 0.00 0.00 41.29 4.45
1567 1864 3.297134 ACAGTGTTTGTTCATCCCAGT 57.703 42.857 0.00 0.00 36.31 4.00
1568 1865 4.431416 ACAGTGTTTGTTCATCCCAGTA 57.569 40.909 0.00 0.00 36.31 2.74
1569 1866 4.389374 ACAGTGTTTGTTCATCCCAGTAG 58.611 43.478 0.00 0.00 36.31 2.57
1570 1867 3.189287 CAGTGTTTGTTCATCCCAGTAGC 59.811 47.826 0.00 0.00 0.00 3.58
1571 1868 2.488153 GTGTTTGTTCATCCCAGTAGCC 59.512 50.000 0.00 0.00 0.00 3.93
1572 1869 2.375174 TGTTTGTTCATCCCAGTAGCCT 59.625 45.455 0.00 0.00 0.00 4.58
1573 1870 3.181434 TGTTTGTTCATCCCAGTAGCCTT 60.181 43.478 0.00 0.00 0.00 4.35
1574 1871 2.787473 TGTTCATCCCAGTAGCCTTG 57.213 50.000 0.00 0.00 0.00 3.61
1575 1872 1.985159 TGTTCATCCCAGTAGCCTTGT 59.015 47.619 0.00 0.00 0.00 3.16
1576 1873 2.375174 TGTTCATCCCAGTAGCCTTGTT 59.625 45.455 0.00 0.00 0.00 2.83
1577 1874 3.181434 TGTTCATCCCAGTAGCCTTGTTT 60.181 43.478 0.00 0.00 0.00 2.83
1578 1875 3.806949 TCATCCCAGTAGCCTTGTTTT 57.193 42.857 0.00 0.00 0.00 2.43
1579 1876 3.686016 TCATCCCAGTAGCCTTGTTTTC 58.314 45.455 0.00 0.00 0.00 2.29
1580 1877 2.178912 TCCCAGTAGCCTTGTTTTCG 57.821 50.000 0.00 0.00 0.00 3.46
1581 1878 1.695242 TCCCAGTAGCCTTGTTTTCGA 59.305 47.619 0.00 0.00 0.00 3.71
1582 1879 2.304761 TCCCAGTAGCCTTGTTTTCGAT 59.695 45.455 0.00 0.00 0.00 3.59
1583 1880 2.420022 CCCAGTAGCCTTGTTTTCGATG 59.580 50.000 0.00 0.00 0.00 3.84
1584 1881 2.420022 CCAGTAGCCTTGTTTTCGATGG 59.580 50.000 0.00 0.00 0.00 3.51
1585 1882 2.084546 AGTAGCCTTGTTTTCGATGGC 58.915 47.619 0.00 0.00 43.52 4.40
1587 1884 3.406682 GCCTTGTTTTCGATGGCTG 57.593 52.632 0.00 0.00 40.36 4.85
1588 1885 0.109132 GCCTTGTTTTCGATGGCTGG 60.109 55.000 0.00 0.00 40.36 4.85
1589 1886 1.247567 CCTTGTTTTCGATGGCTGGT 58.752 50.000 0.00 0.00 0.00 4.00
1590 1887 1.613437 CCTTGTTTTCGATGGCTGGTT 59.387 47.619 0.00 0.00 0.00 3.67
1591 1888 2.607771 CCTTGTTTTCGATGGCTGGTTG 60.608 50.000 0.00 0.00 0.00 3.77
1592 1889 1.974265 TGTTTTCGATGGCTGGTTGA 58.026 45.000 0.00 0.00 0.00 3.18
1593 1890 1.879380 TGTTTTCGATGGCTGGTTGAG 59.121 47.619 0.00 0.00 0.00 3.02
1605 1902 3.855689 CTGGTTGAGCATTTTAGTGGG 57.144 47.619 0.00 0.00 0.00 4.61
1606 1903 3.157087 CTGGTTGAGCATTTTAGTGGGT 58.843 45.455 0.00 0.00 0.00 4.51
1607 1904 4.331968 CTGGTTGAGCATTTTAGTGGGTA 58.668 43.478 0.00 0.00 0.00 3.69
1608 1905 4.730966 TGGTTGAGCATTTTAGTGGGTAA 58.269 39.130 0.00 0.00 0.00 2.85
1609 1906 5.141182 TGGTTGAGCATTTTAGTGGGTAAA 58.859 37.500 0.00 0.00 0.00 2.01
1610 1907 5.010213 TGGTTGAGCATTTTAGTGGGTAAAC 59.990 40.000 0.00 0.00 29.89 2.01
1611 1908 5.010213 GGTTGAGCATTTTAGTGGGTAAACA 59.990 40.000 0.00 0.00 29.89 2.83
1612 1909 5.699097 TGAGCATTTTAGTGGGTAAACAC 57.301 39.130 0.00 0.00 41.63 3.32
1613 1910 4.521256 TGAGCATTTTAGTGGGTAAACACC 59.479 41.667 0.00 0.00 42.28 4.16
1614 1911 4.736473 AGCATTTTAGTGGGTAAACACCT 58.264 39.130 0.00 0.00 42.28 4.00
1615 1912 5.883180 AGCATTTTAGTGGGTAAACACCTA 58.117 37.500 0.00 0.00 42.28 3.08
1616 1913 6.308566 AGCATTTTAGTGGGTAAACACCTAA 58.691 36.000 0.00 0.00 42.28 2.69
1617 1914 6.778559 AGCATTTTAGTGGGTAAACACCTAAA 59.221 34.615 0.00 3.41 42.28 1.85
1618 1915 7.453439 AGCATTTTAGTGGGTAAACACCTAAAT 59.547 33.333 6.78 0.00 42.28 1.40
1619 1916 8.741841 GCATTTTAGTGGGTAAACACCTAAATA 58.258 33.333 6.78 1.92 42.28 1.40
1622 1919 9.865152 TTTTAGTGGGTAAACACCTAAATAAGT 57.135 29.630 6.78 0.00 42.28 2.24
1623 1920 9.865152 TTTAGTGGGTAAACACCTAAATAAGTT 57.135 29.630 0.00 0.00 42.28 2.66
1624 1921 7.754851 AGTGGGTAAACACCTAAATAAGTTG 57.245 36.000 0.00 0.00 42.28 3.16
1625 1922 6.717997 AGTGGGTAAACACCTAAATAAGTTGG 59.282 38.462 0.00 0.00 42.28 3.77
1626 1923 6.011481 TGGGTAAACACCTAAATAAGTTGGG 58.989 40.000 0.00 0.00 43.49 4.12
1627 1924 5.105635 GGGTAAACACCTAAATAAGTTGGGC 60.106 44.000 0.00 0.00 41.58 5.36
1628 1925 5.713389 GGTAAACACCTAAATAAGTTGGGCT 59.287 40.000 0.00 0.00 41.58 5.19
1629 1926 6.209986 GGTAAACACCTAAATAAGTTGGGCTT 59.790 38.462 0.00 0.00 41.58 4.35
1630 1927 6.740944 AAACACCTAAATAAGTTGGGCTTT 57.259 33.333 0.00 0.00 41.58 3.51
1631 1928 6.740944 AACACCTAAATAAGTTGGGCTTTT 57.259 33.333 0.00 0.00 41.58 2.27
1632 1929 6.340962 ACACCTAAATAAGTTGGGCTTTTC 57.659 37.500 0.00 0.00 41.58 2.29
1633 1930 5.048294 ACACCTAAATAAGTTGGGCTTTTCG 60.048 40.000 0.00 0.00 41.58 3.46
1634 1931 5.048294 CACCTAAATAAGTTGGGCTTTTCGT 60.048 40.000 0.00 0.00 41.58 3.85
1635 1932 5.537295 ACCTAAATAAGTTGGGCTTTTCGTT 59.463 36.000 0.00 0.00 41.58 3.85
1636 1933 5.861787 CCTAAATAAGTTGGGCTTTTCGTTG 59.138 40.000 0.00 0.00 38.57 4.10
1637 1934 5.523438 AAATAAGTTGGGCTTTTCGTTGA 57.477 34.783 0.00 0.00 38.57 3.18
1638 1935 5.523438 AATAAGTTGGGCTTTTCGTTGAA 57.477 34.783 0.00 0.00 38.57 2.69
1639 1936 3.436700 AAGTTGGGCTTTTCGTTGAAG 57.563 42.857 0.00 0.00 32.57 3.02
1640 1937 1.067060 AGTTGGGCTTTTCGTTGAAGC 59.933 47.619 10.28 10.28 46.71 3.86
1650 1947 7.812309 GCTTTTCGTTGAAGCCTAAATAAAT 57.188 32.000 8.33 0.00 42.79 1.40
1651 1948 8.905103 GCTTTTCGTTGAAGCCTAAATAAATA 57.095 30.769 8.33 0.00 42.79 1.40
1652 1949 9.010366 GCTTTTCGTTGAAGCCTAAATAAATAG 57.990 33.333 8.33 0.00 42.79 1.73
1657 1954 9.832445 TCGTTGAAGCCTAAATAAATAGATTCT 57.168 29.630 0.00 0.00 0.00 2.40
1671 1968 5.841957 ATAGATTCTTGTTGTTCCCATGC 57.158 39.130 0.00 0.00 0.00 4.06
1672 1969 2.827921 AGATTCTTGTTGTTCCCATGCC 59.172 45.455 0.00 0.00 0.00 4.40
1673 1970 2.380064 TTCTTGTTGTTCCCATGCCT 57.620 45.000 0.00 0.00 0.00 4.75
1674 1971 2.380064 TCTTGTTGTTCCCATGCCTT 57.620 45.000 0.00 0.00 0.00 4.35
1675 1972 1.962807 TCTTGTTGTTCCCATGCCTTG 59.037 47.619 0.00 0.00 0.00 3.61
1676 1973 1.688197 CTTGTTGTTCCCATGCCTTGT 59.312 47.619 0.00 0.00 0.00 3.16
1677 1974 1.039068 TGTTGTTCCCATGCCTTGTG 58.961 50.000 0.00 0.00 0.00 3.33
1678 1975 0.318120 GTTGTTCCCATGCCTTGTGG 59.682 55.000 0.00 0.00 36.47 4.17
1692 1989 4.795970 CCTTGTGGCGTTAGATTGTATC 57.204 45.455 0.00 0.00 0.00 2.24
1693 1990 4.188462 CCTTGTGGCGTTAGATTGTATCA 58.812 43.478 0.00 0.00 0.00 2.15
1694 1991 4.816385 CCTTGTGGCGTTAGATTGTATCAT 59.184 41.667 0.00 0.00 0.00 2.45
1695 1992 5.296780 CCTTGTGGCGTTAGATTGTATCATT 59.703 40.000 0.00 0.00 0.00 2.57
1696 1993 5.733226 TGTGGCGTTAGATTGTATCATTG 57.267 39.130 0.00 0.00 0.00 2.82
1697 1994 4.574421 TGTGGCGTTAGATTGTATCATTGG 59.426 41.667 0.00 0.00 0.00 3.16
1698 1995 4.024048 GTGGCGTTAGATTGTATCATTGGG 60.024 45.833 0.00 0.00 0.00 4.12
1699 1996 3.502211 GGCGTTAGATTGTATCATTGGGG 59.498 47.826 0.00 0.00 0.00 4.96
1700 1997 4.385825 GCGTTAGATTGTATCATTGGGGA 58.614 43.478 0.00 0.00 0.00 4.81
1701 1998 5.003804 GCGTTAGATTGTATCATTGGGGAT 58.996 41.667 0.00 0.00 0.00 3.85
1702 1999 5.106555 GCGTTAGATTGTATCATTGGGGATG 60.107 44.000 0.00 0.00 37.08 3.51
1703 2000 5.997746 CGTTAGATTGTATCATTGGGGATGT 59.002 40.000 0.00 0.00 37.06 3.06
1704 2001 6.486657 CGTTAGATTGTATCATTGGGGATGTT 59.513 38.462 0.00 0.00 37.06 2.71
1705 2002 7.013274 CGTTAGATTGTATCATTGGGGATGTTT 59.987 37.037 0.00 0.00 37.06 2.83
1706 2003 9.349713 GTTAGATTGTATCATTGGGGATGTTTA 57.650 33.333 0.00 0.00 37.06 2.01
1707 2004 9.573166 TTAGATTGTATCATTGGGGATGTTTAG 57.427 33.333 0.00 0.00 37.06 1.85
1708 2005 7.586349 AGATTGTATCATTGGGGATGTTTAGT 58.414 34.615 0.00 0.00 37.06 2.24
1709 2006 8.723365 AGATTGTATCATTGGGGATGTTTAGTA 58.277 33.333 0.00 0.00 37.06 1.82
1710 2007 8.924511 ATTGTATCATTGGGGATGTTTAGTAG 57.075 34.615 0.00 0.00 37.06 2.57
1711 2008 6.837312 TGTATCATTGGGGATGTTTAGTAGG 58.163 40.000 0.00 0.00 37.06 3.18
1712 2009 5.994416 ATCATTGGGGATGTTTAGTAGGT 57.006 39.130 0.00 0.00 37.06 3.08
1713 2010 7.569485 TGTATCATTGGGGATGTTTAGTAGGTA 59.431 37.037 0.00 0.00 37.06 3.08
1714 2011 6.894735 TCATTGGGGATGTTTAGTAGGTAA 57.105 37.500 0.00 0.00 37.06 2.85
1715 2012 7.273457 TCATTGGGGATGTTTAGTAGGTAAA 57.727 36.000 0.00 0.00 37.06 2.01
1716 2013 7.343357 TCATTGGGGATGTTTAGTAGGTAAAG 58.657 38.462 0.00 0.00 37.06 1.85
1717 2014 6.707273 TTGGGGATGTTTAGTAGGTAAAGT 57.293 37.500 0.00 0.00 30.93 2.66
1718 2015 7.811482 TTGGGGATGTTTAGTAGGTAAAGTA 57.189 36.000 0.00 0.00 30.93 2.24
1719 2016 7.427989 TGGGGATGTTTAGTAGGTAAAGTAG 57.572 40.000 0.00 0.00 30.93 2.57
1720 2017 7.191210 TGGGGATGTTTAGTAGGTAAAGTAGA 58.809 38.462 0.00 0.00 30.93 2.59
1721 2018 7.679453 TGGGGATGTTTAGTAGGTAAAGTAGAA 59.321 37.037 0.00 0.00 30.93 2.10
1722 2019 8.202811 GGGGATGTTTAGTAGGTAAAGTAGAAG 58.797 40.741 0.00 0.00 30.93 2.85
1723 2020 8.975295 GGGATGTTTAGTAGGTAAAGTAGAAGA 58.025 37.037 0.00 0.00 30.93 2.87
1725 2022 9.518906 GATGTTTAGTAGGTAAAGTAGAAGAGC 57.481 37.037 0.00 0.00 30.93 4.09
1726 2023 7.834803 TGTTTAGTAGGTAAAGTAGAAGAGCC 58.165 38.462 0.00 0.00 30.93 4.70
1727 2024 7.673082 TGTTTAGTAGGTAAAGTAGAAGAGCCT 59.327 37.037 0.00 0.00 30.93 4.58
1728 2025 9.183368 GTTTAGTAGGTAAAGTAGAAGAGCCTA 57.817 37.037 0.00 0.00 30.93 3.93
1729 2026 9.933240 TTTAGTAGGTAAAGTAGAAGAGCCTAT 57.067 33.333 0.00 0.00 30.99 2.57
1730 2027 9.933240 TTAGTAGGTAAAGTAGAAGAGCCTATT 57.067 33.333 0.00 0.00 30.99 1.73
1731 2028 8.467963 AGTAGGTAAAGTAGAAGAGCCTATTC 57.532 38.462 0.00 0.00 30.99 1.75
1732 2029 8.283708 AGTAGGTAAAGTAGAAGAGCCTATTCT 58.716 37.037 6.83 6.83 40.13 2.40
1733 2030 9.571816 GTAGGTAAAGTAGAAGAGCCTATTCTA 57.428 37.037 4.73 4.73 38.05 2.10
1734 2031 8.700439 AGGTAAAGTAGAAGAGCCTATTCTAG 57.300 38.462 9.00 0.00 39.34 2.43
1735 2032 8.504409 AGGTAAAGTAGAAGAGCCTATTCTAGA 58.496 37.037 9.00 0.00 39.34 2.43
1776 2073 4.141482 ACAGTGTTTGTTCATCCCAGTAGT 60.141 41.667 0.00 0.00 36.31 2.73
1777 2074 5.071250 ACAGTGTTTGTTCATCCCAGTAGTA 59.929 40.000 0.00 0.00 36.31 1.82
1778 2075 5.639506 CAGTGTTTGTTCATCCCAGTAGTAG 59.360 44.000 0.00 0.00 0.00 2.57
1784 2081 6.222038 TGTTCATCCCAGTAGTAGCTTTAG 57.778 41.667 0.00 0.00 0.00 1.85
1817 2114 2.159254 CGGTTGGGCATTGTAAAGGATG 60.159 50.000 0.00 0.00 0.00 3.51
1883 2180 4.819105 ATCGAGTCTTGTTGTTCCCATA 57.181 40.909 0.00 0.00 0.00 2.74
2085 2392 2.087646 GATTCAGGTTTCTCCAGCACC 58.912 52.381 0.00 0.00 39.02 5.01
2127 2439 2.359848 TGCTTGATTGCATCCATAGCAC 59.640 45.455 14.98 0.00 42.54 4.40
2215 2527 9.254133 CACATGAATCCTACAACTATTAGTGAG 57.746 37.037 0.00 0.00 0.00 3.51
2216 2528 8.982723 ACATGAATCCTACAACTATTAGTGAGT 58.017 33.333 0.00 2.68 0.00 3.41
2219 2531 9.696572 TGAATCCTACAACTATTAGTGAGTAGT 57.303 33.333 22.39 12.56 36.61 2.73
2220 2532 9.953697 GAATCCTACAACTATTAGTGAGTAGTG 57.046 37.037 22.39 17.33 36.61 2.74
2221 2533 9.696572 AATCCTACAACTATTAGTGAGTAGTGA 57.303 33.333 22.39 19.93 36.61 3.41
2306 2618 8.128582 TCAGTGAAATACAAGCAAACTTTACAG 58.871 33.333 0.00 0.00 32.29 2.74
2307 2619 8.128582 CAGTGAAATACAAGCAAACTTTACAGA 58.871 33.333 0.00 0.00 32.29 3.41
2308 2620 8.682710 AGTGAAATACAAGCAAACTTTACAGAA 58.317 29.630 0.00 0.00 32.29 3.02
2309 2621 8.958043 GTGAAATACAAGCAAACTTTACAGAAG 58.042 33.333 0.00 0.00 32.29 2.85
2310 2622 8.682710 TGAAATACAAGCAAACTTTACAGAAGT 58.317 29.630 0.00 0.00 32.29 3.01
2311 2623 9.516314 GAAATACAAGCAAACTTTACAGAAGTT 57.484 29.630 0.00 0.00 41.82 2.66
2341 2653 1.281925 CCCCCACTGGCCTCTATGTT 61.282 60.000 3.32 0.00 0.00 2.71
2347 2659 3.118112 CCACTGGCCTCTATGTTGATCTT 60.118 47.826 3.32 0.00 0.00 2.40
2361 2673 4.290985 TGTTGATCTTCCCCTGTAATTGGA 59.709 41.667 0.00 0.00 0.00 3.53
2395 3472 4.348168 AGGTAAAGCAGAGGAAAGACAAGA 59.652 41.667 0.00 0.00 0.00 3.02
2422 3499 0.692476 TGTGGTGCTGGACTATGCTT 59.308 50.000 0.00 0.00 0.00 3.91
2443 3521 5.625197 GCTTGTTGATTGGATGCTAATTGGT 60.625 40.000 0.00 0.00 0.00 3.67
2464 3542 7.786178 TGGTAAGCATCATTCAGTTATACAC 57.214 36.000 0.00 0.00 0.00 2.90
2483 3561 0.465097 CTCGCTGCCTCCATCCATTT 60.465 55.000 0.00 0.00 0.00 2.32
2497 3575 8.193438 CCTCCATCCATTTGAGAAGAAAATTAC 58.807 37.037 0.00 0.00 0.00 1.89
2506 3584 9.985730 ATTTGAGAAGAAAATTACTGATTTGCA 57.014 25.926 0.00 0.00 37.98 4.08
2521 3599 4.018506 TGATTTGCAGAATAGGGGTTCAGA 60.019 41.667 0.00 0.00 0.00 3.27
2527 3605 6.489603 TGCAGAATAGGGGTTCAGATTTTTA 58.510 36.000 0.00 0.00 0.00 1.52
2529 3607 7.122650 TGCAGAATAGGGGTTCAGATTTTTAAG 59.877 37.037 0.00 0.00 0.00 1.85
2530 3608 7.484140 CAGAATAGGGGTTCAGATTTTTAAGC 58.516 38.462 0.00 0.00 0.00 3.09
2550 3635 5.936686 AGCTACATCATTGATTGAATCCG 57.063 39.130 2.26 0.00 38.03 4.18
2562 3647 5.348986 TGATTGAATCCGTAGCAGACTTAC 58.651 41.667 2.26 0.00 0.00 2.34
2615 3700 0.948678 TTTTCTGCCTACCGTGCAAC 59.051 50.000 0.00 0.00 38.46 4.17
2625 3710 1.282570 CCGTGCAACACCACATGAC 59.717 57.895 0.00 0.00 35.74 3.06
2629 3714 1.068333 GTGCAACACCACATGACATCC 60.068 52.381 0.00 0.00 36.32 3.51
2634 3719 4.071423 CAACACCACATGACATCCTACAA 58.929 43.478 0.00 0.00 0.00 2.41
2648 3733 5.067413 ACATCCTACAACTATAGTGACACCG 59.933 44.000 6.06 0.00 0.00 4.94
2651 3736 5.586243 TCCTACAACTATAGTGACACCGTAC 59.414 44.000 6.06 0.00 0.00 3.67
2695 3780 0.323360 GGCTATCTGTTGGGGCACAA 60.323 55.000 0.00 0.00 36.54 3.33
2707 3792 0.257039 GGGCACAACCATCAGATCCT 59.743 55.000 0.00 0.00 42.05 3.24
2840 3925 1.912043 CCTTGGATCTTGAGGGTGTCT 59.088 52.381 0.00 0.00 0.00 3.41
2920 4007 3.385577 GTTGGAGGCGTGATAGATTCTC 58.614 50.000 0.00 0.00 0.00 2.87
2976 4063 7.412137 AAGAATTTGTTTATTGTGCTTCTGC 57.588 32.000 0.00 0.00 40.20 4.26
3056 4145 3.053828 GCCTTTGCTGCACCATGT 58.946 55.556 0.00 0.00 33.53 3.21
3376 4476 1.651631 GTGGCGTTTGTTTGTGTTGAC 59.348 47.619 0.00 0.00 0.00 3.18
3378 4478 1.466024 GGCGTTTGTTTGTGTTGACGA 60.466 47.619 0.00 0.00 32.73 4.20
3390 4490 3.035942 GTGTTGACGATTTCTTGTGTGC 58.964 45.455 0.00 0.00 0.00 4.57
3410 4510 2.678336 GCTTCCTTCCTTGTATTGGTCG 59.322 50.000 0.00 0.00 0.00 4.79
3429 4529 1.877680 CGGTTGTCTCACTGCCATGAA 60.878 52.381 0.00 0.00 0.00 2.57
3431 4531 2.227388 GGTTGTCTCACTGCCATGAAAG 59.773 50.000 0.00 0.00 0.00 2.62
3448 4548 1.609208 AAGGCATGTTGTCACCTGAC 58.391 50.000 0.00 0.00 44.97 3.51
3458 4558 2.758736 GTCACCTGACAGCATCTTCT 57.241 50.000 0.00 0.00 44.18 2.85
3462 4562 4.997395 GTCACCTGACAGCATCTTCTAAAA 59.003 41.667 0.00 0.00 44.18 1.52
3503 5819 2.176148 TCACCATGGGAGATCAATGCAT 59.824 45.455 18.09 0.00 0.00 3.96
3541 5866 4.817063 CATTGGCGCACGCTTCGG 62.817 66.667 15.36 0.00 41.60 4.30
3589 5914 1.877165 GCGAACTACTGCGCCTACC 60.877 63.158 4.18 0.00 46.93 3.18
3909 6261 3.214123 CTCCCCGTCGTCGCCATA 61.214 66.667 0.00 0.00 35.54 2.74
3983 6335 2.631545 ACCTCAACCGCTGTAAGTACTT 59.368 45.455 13.68 13.68 35.30 2.24
4001 6353 4.283363 ACTTCAGTCAACATCTCATGCT 57.717 40.909 0.00 0.00 0.00 3.79
4032 6396 0.250640 ATTGCCGGCTCTGATGATCC 60.251 55.000 29.70 0.00 0.00 3.36
4033 6397 2.031768 GCCGGCTCTGATGATCCC 59.968 66.667 22.15 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 0.813821 GCCTCTTGCCATTGTTCCTC 59.186 55.000 0.00 0.00 0.00 3.71
111 112 0.595825 GTTTGCAGTGTGCCTCTTGC 60.596 55.000 0.00 0.00 44.23 4.01
470 472 4.252073 TCTGGTCTCTACACTAGACGTTC 58.748 47.826 0.00 0.00 43.55 3.95
496 498 2.301577 AGCAAGCTCGTAGATGGAAC 57.698 50.000 0.00 0.00 33.89 3.62
528 530 3.157750 AGTACAGAAGGGAACTCTCGT 57.842 47.619 0.00 0.00 42.68 4.18
530 532 3.382227 GCCTAGTACAGAAGGGAACTCTC 59.618 52.174 10.03 0.00 42.68 3.20
535 537 1.822990 CGTGCCTAGTACAGAAGGGAA 59.177 52.381 10.03 0.00 34.72 3.97
537 539 1.183549 ACGTGCCTAGTACAGAAGGG 58.816 55.000 10.03 0.00 33.17 3.95
549 551 3.692593 AGAACACTAACAAAAACGTGCCT 59.307 39.130 0.00 0.00 0.00 4.75
555 557 7.480542 CACACACACTAGAACACTAACAAAAAC 59.519 37.037 0.00 0.00 0.00 2.43
586 588 3.855209 AATTCACACACACGCGCGC 62.855 57.895 32.58 23.91 0.00 6.86
587 589 1.788203 GAATTCACACACACGCGCG 60.788 57.895 30.96 30.96 0.00 6.86
588 590 0.110238 ATGAATTCACACACACGCGC 60.110 50.000 11.07 0.00 0.00 6.86
589 591 1.069973 ACATGAATTCACACACACGCG 60.070 47.619 11.07 3.53 0.00 6.01
590 592 2.686558 ACATGAATTCACACACACGC 57.313 45.000 11.07 0.00 0.00 5.34
591 593 5.784750 ATCTACATGAATTCACACACACG 57.215 39.130 11.07 0.00 0.00 4.49
596 598 8.730680 ACAGGTAAAATCTACATGAATTCACAC 58.269 33.333 11.07 0.00 33.90 3.82
644 646 3.454812 AGGTAACAGGTGACAGAACTTGT 59.545 43.478 0.00 0.00 41.65 3.16
645 647 4.058817 GAGGTAACAGGTGACAGAACTTG 58.941 47.826 0.00 0.00 41.41 3.16
646 648 3.967987 AGAGGTAACAGGTGACAGAACTT 59.032 43.478 0.00 0.00 41.41 2.66
647 649 3.322254 CAGAGGTAACAGGTGACAGAACT 59.678 47.826 0.00 0.00 41.41 3.01
648 650 3.069729 ACAGAGGTAACAGGTGACAGAAC 59.930 47.826 0.00 0.00 41.41 3.01
649 651 3.069586 CACAGAGGTAACAGGTGACAGAA 59.930 47.826 0.00 0.00 36.58 3.02
728 734 6.405508 CCCATTTGTCATTTTCTCTCTCCATG 60.406 42.308 0.00 0.00 0.00 3.66
729 735 5.655532 CCCATTTGTCATTTTCTCTCTCCAT 59.344 40.000 0.00 0.00 0.00 3.41
730 736 5.012239 CCCATTTGTCATTTTCTCTCTCCA 58.988 41.667 0.00 0.00 0.00 3.86
731 737 4.400567 CCCCATTTGTCATTTTCTCTCTCC 59.599 45.833 0.00 0.00 0.00 3.71
753 759 8.635983 CAGTACGCTAAAAAGAAAATTTAAGCC 58.364 33.333 0.00 0.00 0.00 4.35
764 770 7.718272 TTTAAGCTTCAGTACGCTAAAAAGA 57.282 32.000 0.00 0.00 34.96 2.52
794 834 5.819825 AAAAAGGTCGCTGATTCCTAATC 57.180 39.130 0.00 0.00 38.40 1.75
831 996 6.041637 ACCGATGTACCAGAATTAGATTGCTA 59.958 38.462 0.00 0.00 0.00 3.49
835 1000 6.055588 CCAACCGATGTACCAGAATTAGATT 58.944 40.000 0.00 0.00 0.00 2.40
850 1015 1.472480 CTAAACTTGGGCCAACCGATG 59.528 52.381 16.66 7.97 44.64 3.84
886 1053 4.133796 GTTGGGCCCGCAATGAGC 62.134 66.667 19.37 0.00 40.87 4.26
890 1057 2.828549 GATCGTTGGGCCCGCAAT 60.829 61.111 19.37 7.96 0.00 3.56
914 1081 0.475906 GGCTTGGCCTATCCATCTGT 59.524 55.000 3.32 0.00 46.69 3.41
929 1096 2.765699 TGTGCTTTTTCTTTCTGGGCTT 59.234 40.909 0.00 0.00 0.00 4.35
939 1106 3.058224 GGATTAGTGCGTGTGCTTTTTCT 60.058 43.478 0.00 0.00 43.34 2.52
942 1109 1.539827 GGGATTAGTGCGTGTGCTTTT 59.460 47.619 0.00 0.00 43.34 2.27
1023 1193 5.474876 CACCATGCCTTCTTACTTTTCTTCT 59.525 40.000 0.00 0.00 0.00 2.85
1033 1203 0.251916 CGGACCACCATGCCTTCTTA 59.748 55.000 0.00 0.00 35.59 2.10
1035 1205 2.671070 CGGACCACCATGCCTTCT 59.329 61.111 0.00 0.00 35.59 2.85
1266 1456 1.728825 CGCATCACAAAACATGACCCG 60.729 52.381 0.00 0.00 0.00 5.28
1273 1463 2.470628 CGCAAAATCGCATCACAAAACA 59.529 40.909 0.00 0.00 0.00 2.83
1304 1590 4.106925 CAGCACCAGAGCTCCCCC 62.107 72.222 10.93 0.00 44.54 5.40
1354 1640 2.735823 CAGACAGCAACAGAAAAAGGC 58.264 47.619 0.00 0.00 0.00 4.35
1457 1751 3.808174 GGAGTACAACTGAACAACACTCC 59.192 47.826 2.38 2.38 42.60 3.85
1462 1756 6.033966 CCAAAAAGGAGTACAACTGAACAAC 58.966 40.000 0.00 0.00 41.22 3.32
1520 1817 9.924010 ACCATTCTATGTTACTTCTAGAGTAGT 57.076 33.333 2.73 2.73 41.68 2.73
1531 1828 8.154856 ACAAACACTGTACCATTCTATGTTACT 58.845 33.333 0.00 0.00 36.10 2.24
1532 1829 8.319143 ACAAACACTGTACCATTCTATGTTAC 57.681 34.615 0.00 0.00 36.10 2.50
1533 1830 8.911918 AACAAACACTGTACCATTCTATGTTA 57.088 30.769 0.00 0.00 37.23 2.41
1534 1831 7.500892 TGAACAAACACTGTACCATTCTATGTT 59.499 33.333 0.00 0.00 37.23 2.71
1535 1832 6.995686 TGAACAAACACTGTACCATTCTATGT 59.004 34.615 0.00 0.00 37.23 2.29
1536 1833 7.433708 TGAACAAACACTGTACCATTCTATG 57.566 36.000 0.00 0.00 37.23 2.23
1537 1834 7.336931 GGATGAACAAACACTGTACCATTCTAT 59.663 37.037 0.00 0.00 37.23 1.98
1538 1835 6.653320 GGATGAACAAACACTGTACCATTCTA 59.347 38.462 0.00 0.00 37.23 2.10
1539 1836 5.473504 GGATGAACAAACACTGTACCATTCT 59.526 40.000 0.00 0.00 37.23 2.40
1540 1837 5.335661 GGGATGAACAAACACTGTACCATTC 60.336 44.000 0.00 0.00 37.23 2.67
1541 1838 4.522789 GGGATGAACAAACACTGTACCATT 59.477 41.667 0.00 0.00 37.23 3.16
1542 1839 4.079253 GGGATGAACAAACACTGTACCAT 58.921 43.478 0.00 0.00 37.23 3.55
1543 1840 3.117851 TGGGATGAACAAACACTGTACCA 60.118 43.478 0.00 0.00 37.23 3.25
1544 1841 3.482436 TGGGATGAACAAACACTGTACC 58.518 45.455 0.00 0.00 37.23 3.34
1545 1842 4.134563 ACTGGGATGAACAAACACTGTAC 58.865 43.478 0.00 0.00 37.23 2.90
1546 1843 4.431416 ACTGGGATGAACAAACACTGTA 57.569 40.909 0.00 0.00 37.23 2.74
1547 1844 3.297134 ACTGGGATGAACAAACACTGT 57.703 42.857 0.00 0.00 41.27 3.55
1548 1845 3.189287 GCTACTGGGATGAACAAACACTG 59.811 47.826 0.00 0.00 0.00 3.66
1549 1846 3.412386 GCTACTGGGATGAACAAACACT 58.588 45.455 0.00 0.00 0.00 3.55
1550 1847 2.488153 GGCTACTGGGATGAACAAACAC 59.512 50.000 0.00 0.00 0.00 3.32
1551 1848 2.375174 AGGCTACTGGGATGAACAAACA 59.625 45.455 0.00 0.00 0.00 2.83
1552 1849 3.073274 AGGCTACTGGGATGAACAAAC 57.927 47.619 0.00 0.00 0.00 2.93
1553 1850 3.181434 ACAAGGCTACTGGGATGAACAAA 60.181 43.478 0.00 0.00 0.00 2.83
1554 1851 2.375174 ACAAGGCTACTGGGATGAACAA 59.625 45.455 0.00 0.00 0.00 2.83
1555 1852 1.985159 ACAAGGCTACTGGGATGAACA 59.015 47.619 0.00 0.00 0.00 3.18
1556 1853 2.789409 ACAAGGCTACTGGGATGAAC 57.211 50.000 0.00 0.00 0.00 3.18
1557 1854 3.806949 AAACAAGGCTACTGGGATGAA 57.193 42.857 0.00 0.00 0.00 2.57
1558 1855 3.686016 GAAAACAAGGCTACTGGGATGA 58.314 45.455 0.00 0.00 0.00 2.92
1559 1856 2.420022 CGAAAACAAGGCTACTGGGATG 59.580 50.000 0.00 0.00 0.00 3.51
1560 1857 2.304761 TCGAAAACAAGGCTACTGGGAT 59.695 45.455 0.00 0.00 0.00 3.85
1561 1858 1.695242 TCGAAAACAAGGCTACTGGGA 59.305 47.619 0.00 0.00 0.00 4.37
1562 1859 2.178912 TCGAAAACAAGGCTACTGGG 57.821 50.000 0.00 0.00 0.00 4.45
1563 1860 2.420022 CCATCGAAAACAAGGCTACTGG 59.580 50.000 0.00 0.00 0.00 4.00
1564 1861 2.159517 GCCATCGAAAACAAGGCTACTG 60.160 50.000 0.00 0.00 42.01 2.74
1565 1862 2.084546 GCCATCGAAAACAAGGCTACT 58.915 47.619 0.00 0.00 42.01 2.57
1566 1863 2.544480 GCCATCGAAAACAAGGCTAC 57.456 50.000 0.00 0.00 42.01 3.58
1569 1866 0.109132 CCAGCCATCGAAAACAAGGC 60.109 55.000 0.00 0.00 45.54 4.35
1570 1867 1.247567 ACCAGCCATCGAAAACAAGG 58.752 50.000 0.00 0.00 0.00 3.61
1571 1868 2.293122 TCAACCAGCCATCGAAAACAAG 59.707 45.455 0.00 0.00 0.00 3.16
1572 1869 2.293122 CTCAACCAGCCATCGAAAACAA 59.707 45.455 0.00 0.00 0.00 2.83
1573 1870 1.879380 CTCAACCAGCCATCGAAAACA 59.121 47.619 0.00 0.00 0.00 2.83
1574 1871 1.401539 GCTCAACCAGCCATCGAAAAC 60.402 52.381 0.00 0.00 43.17 2.43
1575 1872 0.881118 GCTCAACCAGCCATCGAAAA 59.119 50.000 0.00 0.00 43.17 2.29
1576 1873 2.555123 GCTCAACCAGCCATCGAAA 58.445 52.632 0.00 0.00 43.17 3.46
1577 1874 4.301505 GCTCAACCAGCCATCGAA 57.698 55.556 0.00 0.00 43.17 3.71
1585 1882 3.157087 ACCCACTAAAATGCTCAACCAG 58.843 45.455 0.00 0.00 0.00 4.00
1586 1883 3.237268 ACCCACTAAAATGCTCAACCA 57.763 42.857 0.00 0.00 0.00 3.67
1587 1884 5.010213 TGTTTACCCACTAAAATGCTCAACC 59.990 40.000 0.00 0.00 0.00 3.77
1588 1885 5.918576 GTGTTTACCCACTAAAATGCTCAAC 59.081 40.000 0.00 0.00 32.50 3.18
1589 1886 5.010213 GGTGTTTACCCACTAAAATGCTCAA 59.990 40.000 0.00 0.00 41.36 3.02
1590 1887 4.521256 GGTGTTTACCCACTAAAATGCTCA 59.479 41.667 0.00 0.00 41.36 4.26
1591 1888 5.055642 GGTGTTTACCCACTAAAATGCTC 57.944 43.478 0.00 0.00 41.36 4.26
1603 1900 8.668368 AAGCCCAACTTATTTAGGTGTTTACCC 61.668 40.741 0.00 0.00 41.86 3.69
1604 1901 6.209986 AAGCCCAACTTATTTAGGTGTTTACC 59.790 38.462 0.00 0.00 40.14 2.85
1605 1902 6.829229 AGCCCAACTTATTTAGGTGTTTAC 57.171 37.500 0.00 0.00 40.14 2.01
1606 1903 7.842887 AAAGCCCAACTTATTTAGGTGTTTA 57.157 32.000 0.00 0.00 40.14 2.01
1607 1904 6.740944 AAAGCCCAACTTATTTAGGTGTTT 57.259 33.333 0.00 0.00 40.14 2.83
1608 1905 6.516028 CGAAAAGCCCAACTTATTTAGGTGTT 60.516 38.462 0.00 0.00 40.14 3.32
1609 1906 5.048294 CGAAAAGCCCAACTTATTTAGGTGT 60.048 40.000 0.00 0.00 40.14 4.16
1610 1907 5.048294 ACGAAAAGCCCAACTTATTTAGGTG 60.048 40.000 0.00 0.00 41.52 4.00
1611 1908 5.074804 ACGAAAAGCCCAACTTATTTAGGT 58.925 37.500 0.00 0.00 37.75 3.08
1612 1909 5.638596 ACGAAAAGCCCAACTTATTTAGG 57.361 39.130 0.00 0.00 37.75 2.69
1613 1910 6.674066 TCAACGAAAAGCCCAACTTATTTAG 58.326 36.000 0.00 0.00 37.75 1.85
1614 1911 6.636562 TCAACGAAAAGCCCAACTTATTTA 57.363 33.333 0.00 0.00 37.75 1.40
1615 1912 5.523438 TCAACGAAAAGCCCAACTTATTT 57.477 34.783 0.00 0.00 37.75 1.40
1616 1913 5.523438 TTCAACGAAAAGCCCAACTTATT 57.477 34.783 0.00 0.00 37.75 1.40
1617 1914 4.558697 GCTTCAACGAAAAGCCCAACTTAT 60.559 41.667 9.11 0.00 42.63 1.73
1618 1915 3.243267 GCTTCAACGAAAAGCCCAACTTA 60.243 43.478 9.11 0.00 42.63 2.24
1619 1916 2.481276 GCTTCAACGAAAAGCCCAACTT 60.481 45.455 9.11 0.00 42.63 2.66
1620 1917 1.067060 GCTTCAACGAAAAGCCCAACT 59.933 47.619 9.11 0.00 42.63 3.16
1621 1918 1.487482 GCTTCAACGAAAAGCCCAAC 58.513 50.000 9.11 0.00 42.63 3.77
1622 1919 3.957383 GCTTCAACGAAAAGCCCAA 57.043 47.368 9.11 0.00 42.63 4.12
1626 1923 7.812309 ATTTATTTAGGCTTCAACGAAAAGC 57.188 32.000 11.07 11.07 46.66 3.51
1631 1928 9.832445 AGAATCTATTTATTTAGGCTTCAACGA 57.168 29.630 0.00 0.00 0.00 3.85
1671 1968 4.188462 TGATACAATCTAACGCCACAAGG 58.812 43.478 0.00 0.00 38.23 3.61
1672 1969 5.991328 ATGATACAATCTAACGCCACAAG 57.009 39.130 0.00 0.00 0.00 3.16
1673 1970 5.065859 CCAATGATACAATCTAACGCCACAA 59.934 40.000 0.00 0.00 0.00 3.33
1674 1971 4.574421 CCAATGATACAATCTAACGCCACA 59.426 41.667 0.00 0.00 0.00 4.17
1675 1972 4.024048 CCCAATGATACAATCTAACGCCAC 60.024 45.833 0.00 0.00 0.00 5.01
1676 1973 4.133820 CCCAATGATACAATCTAACGCCA 58.866 43.478 0.00 0.00 0.00 5.69
1677 1974 3.502211 CCCCAATGATACAATCTAACGCC 59.498 47.826 0.00 0.00 0.00 5.68
1678 1975 4.385825 TCCCCAATGATACAATCTAACGC 58.614 43.478 0.00 0.00 0.00 4.84
1679 1976 5.997746 ACATCCCCAATGATACAATCTAACG 59.002 40.000 0.00 0.00 38.83 3.18
1680 1977 7.823745 AACATCCCCAATGATACAATCTAAC 57.176 36.000 0.00 0.00 38.83 2.34
1681 1978 9.573166 CTAAACATCCCCAATGATACAATCTAA 57.427 33.333 0.00 0.00 38.83 2.10
1682 1979 8.723365 ACTAAACATCCCCAATGATACAATCTA 58.277 33.333 0.00 0.00 38.83 1.98
1683 1980 7.586349 ACTAAACATCCCCAATGATACAATCT 58.414 34.615 0.00 0.00 38.83 2.40
1684 1981 7.823745 ACTAAACATCCCCAATGATACAATC 57.176 36.000 0.00 0.00 38.83 2.67
1685 1982 7.944554 CCTACTAAACATCCCCAATGATACAAT 59.055 37.037 0.00 0.00 38.83 2.71
1686 1983 7.092174 ACCTACTAAACATCCCCAATGATACAA 60.092 37.037 0.00 0.00 38.83 2.41
1687 1984 6.388689 ACCTACTAAACATCCCCAATGATACA 59.611 38.462 0.00 0.00 38.83 2.29
1688 1985 6.838382 ACCTACTAAACATCCCCAATGATAC 58.162 40.000 0.00 0.00 38.83 2.24
1689 1986 8.570038 TTACCTACTAAACATCCCCAATGATA 57.430 34.615 0.00 0.00 38.83 2.15
1690 1987 5.994416 ACCTACTAAACATCCCCAATGAT 57.006 39.130 0.00 0.00 38.83 2.45
1691 1988 6.894735 TTACCTACTAAACATCCCCAATGA 57.105 37.500 0.00 0.00 38.83 2.57
1692 1989 7.116736 ACTTTACCTACTAAACATCCCCAATG 58.883 38.462 0.00 0.00 41.48 2.82
1693 1990 7.280044 ACTTTACCTACTAAACATCCCCAAT 57.720 36.000 0.00 0.00 0.00 3.16
1694 1991 6.707273 ACTTTACCTACTAAACATCCCCAA 57.293 37.500 0.00 0.00 0.00 4.12
1695 1992 7.191210 TCTACTTTACCTACTAAACATCCCCA 58.809 38.462 0.00 0.00 0.00 4.96
1696 1993 7.666063 TCTACTTTACCTACTAAACATCCCC 57.334 40.000 0.00 0.00 0.00 4.81
1697 1994 8.975295 TCTTCTACTTTACCTACTAAACATCCC 58.025 37.037 0.00 0.00 0.00 3.85
1699 1996 9.518906 GCTCTTCTACTTTACCTACTAAACATC 57.481 37.037 0.00 0.00 0.00 3.06
1700 1997 8.476447 GGCTCTTCTACTTTACCTACTAAACAT 58.524 37.037 0.00 0.00 0.00 2.71
1701 1998 7.673082 AGGCTCTTCTACTTTACCTACTAAACA 59.327 37.037 0.00 0.00 0.00 2.83
1702 1999 8.065473 AGGCTCTTCTACTTTACCTACTAAAC 57.935 38.462 0.00 0.00 0.00 2.01
1703 2000 9.933240 ATAGGCTCTTCTACTTTACCTACTAAA 57.067 33.333 0.00 0.00 31.47 1.85
1704 2001 9.933240 AATAGGCTCTTCTACTTTACCTACTAA 57.067 33.333 0.00 0.00 31.47 2.24
1705 2002 9.571816 GAATAGGCTCTTCTACTTTACCTACTA 57.428 37.037 5.45 0.00 31.47 1.82
1706 2003 8.283708 AGAATAGGCTCTTCTACTTTACCTACT 58.716 37.037 12.92 0.00 31.27 2.57
1707 2004 8.467963 AGAATAGGCTCTTCTACTTTACCTAC 57.532 38.462 12.92 0.00 31.27 3.18
1708 2005 9.796180 CTAGAATAGGCTCTTCTACTTTACCTA 57.204 37.037 15.94 0.00 34.22 3.08
1709 2006 8.504409 TCTAGAATAGGCTCTTCTACTTTACCT 58.496 37.037 15.94 0.00 39.78 3.08
1710 2007 8.694581 TCTAGAATAGGCTCTTCTACTTTACC 57.305 38.462 15.94 0.00 39.78 2.85
1712 2009 9.924010 ACTTCTAGAATAGGCTCTTCTACTTTA 57.076 33.333 15.94 1.16 39.78 1.85
1713 2010 8.832458 ACTTCTAGAATAGGCTCTTCTACTTT 57.168 34.615 15.94 0.00 39.78 2.66
1714 2011 9.924010 TTACTTCTAGAATAGGCTCTTCTACTT 57.076 33.333 15.94 5.85 39.78 2.24
1715 2012 9.346005 GTTACTTCTAGAATAGGCTCTTCTACT 57.654 37.037 15.94 4.72 39.78 2.57
1716 2013 9.122779 TGTTACTTCTAGAATAGGCTCTTCTAC 57.877 37.037 15.94 9.44 39.78 2.59
1717 2014 9.869667 ATGTTACTTCTAGAATAGGCTCTTCTA 57.130 33.333 18.07 18.07 39.78 2.10
1718 2015 8.776061 ATGTTACTTCTAGAATAGGCTCTTCT 57.224 34.615 17.79 17.79 39.78 2.85
1720 2017 9.869667 TCTATGTTACTTCTAGAATAGGCTCTT 57.130 33.333 5.44 0.00 39.78 2.85
1721 2018 9.515226 CTCTATGTTACTTCTAGAATAGGCTCT 57.485 37.037 5.44 0.00 39.78 4.09
1722 2019 9.292195 ACTCTATGTTACTTCTAGAATAGGCTC 57.708 37.037 5.44 0.00 39.78 4.70
1733 2030 9.517868 ACACTGTTACTACTCTATGTTACTTCT 57.482 33.333 0.00 0.00 0.00 2.85
1776 2073 3.531538 CGGCCATCAAAGACTAAAGCTA 58.468 45.455 2.24 0.00 0.00 3.32
1777 2074 2.359900 CGGCCATCAAAGACTAAAGCT 58.640 47.619 2.24 0.00 0.00 3.74
1778 2075 1.401905 CCGGCCATCAAAGACTAAAGC 59.598 52.381 2.24 0.00 0.00 3.51
1784 2081 1.595093 CCCAACCGGCCATCAAAGAC 61.595 60.000 0.00 0.00 0.00 3.01
1883 2180 2.579410 ACAATCTACCGCCAAAAGGT 57.421 45.000 0.00 0.00 45.28 3.50
2085 2392 5.990386 AGCACATCTGCACATCTTATAAGAG 59.010 40.000 19.51 13.72 46.97 2.85
2215 2527 5.049405 CCACTCCAAATTTGAGTGTCACTAC 60.049 44.000 28.87 0.65 43.29 2.73
2216 2528 5.063204 CCACTCCAAATTTGAGTGTCACTA 58.937 41.667 28.87 0.00 43.29 2.74
2217 2529 3.885297 CCACTCCAAATTTGAGTGTCACT 59.115 43.478 28.87 4.81 43.29 3.41
2218 2530 3.004734 CCCACTCCAAATTTGAGTGTCAC 59.995 47.826 28.87 0.00 43.29 3.67
2219 2531 3.221771 CCCACTCCAAATTTGAGTGTCA 58.778 45.455 28.87 8.68 43.29 3.58
2220 2532 2.558359 CCCCACTCCAAATTTGAGTGTC 59.442 50.000 28.87 0.00 43.29 3.67
2221 2533 2.597455 CCCCACTCCAAATTTGAGTGT 58.403 47.619 28.87 19.82 43.29 3.55
2306 2618 4.222810 AGTGGGGGCATATTTTCAAACTTC 59.777 41.667 0.00 0.00 0.00 3.01
2307 2619 4.020307 CAGTGGGGGCATATTTTCAAACTT 60.020 41.667 0.00 0.00 0.00 2.66
2308 2620 3.515104 CAGTGGGGGCATATTTTCAAACT 59.485 43.478 0.00 0.00 0.00 2.66
2309 2621 3.369366 CCAGTGGGGGCATATTTTCAAAC 60.369 47.826 0.00 0.00 0.00 2.93
2310 2622 2.836981 CCAGTGGGGGCATATTTTCAAA 59.163 45.455 0.00 0.00 0.00 2.69
2311 2623 2.465813 CCAGTGGGGGCATATTTTCAA 58.534 47.619 0.00 0.00 0.00 2.69
2312 2624 2.157640 CCAGTGGGGGCATATTTTCA 57.842 50.000 0.00 0.00 0.00 2.69
2341 2653 3.459598 CCTCCAATTACAGGGGAAGATCA 59.540 47.826 0.00 0.00 0.00 2.92
2347 2659 2.041081 CAACACCTCCAATTACAGGGGA 59.959 50.000 10.49 0.00 34.76 4.81
2361 2673 3.901844 TCTGCTTTACCTACTCAACACCT 59.098 43.478 0.00 0.00 0.00 4.00
2395 3472 3.832527 AGTCCAGCACCACATAGTTTTT 58.167 40.909 0.00 0.00 0.00 1.94
2422 3499 6.405731 GCTTACCAATTAGCATCCAATCAACA 60.406 38.462 0.00 0.00 37.35 3.33
2443 3521 6.420903 GCGAGTGTATAACTGAATGATGCTTA 59.579 38.462 0.00 0.00 40.07 3.09
2464 3542 0.465097 AAATGGATGGAGGCAGCGAG 60.465 55.000 0.00 0.00 0.00 5.03
2483 3561 8.394971 TCTGCAAATCAGTAATTTTCTTCTCA 57.605 30.769 0.00 0.00 43.32 3.27
2497 3575 4.272489 TGAACCCCTATTCTGCAAATCAG 58.728 43.478 0.00 0.00 44.21 2.90
2506 3584 7.414266 AGCTTAAAAATCTGAACCCCTATTCT 58.586 34.615 0.00 0.00 0.00 2.40
2527 3605 5.824624 ACGGATTCAATCAATGATGTAGCTT 59.175 36.000 0.00 0.00 38.03 3.74
2529 3607 5.679734 ACGGATTCAATCAATGATGTAGC 57.320 39.130 0.00 0.00 38.03 3.58
2530 3608 6.424812 TGCTACGGATTCAATCAATGATGTAG 59.575 38.462 0.00 3.68 38.03 2.74
2545 3630 5.828859 ACTATCAGTAAGTCTGCTACGGATT 59.171 40.000 3.60 0.00 43.32 3.01
2550 3635 8.138712 AGCAAATACTATCAGTAAGTCTGCTAC 58.861 37.037 10.53 0.00 43.32 3.58
2562 3647 9.002600 TGGCATATTTGTAGCAAATACTATCAG 57.997 33.333 14.18 4.92 35.24 2.90
2566 3651 8.690203 ACATGGCATATTTGTAGCAAATACTA 57.310 30.769 14.18 4.42 35.24 1.82
2606 3691 1.153066 TCATGTGGTGTTGCACGGT 60.153 52.632 0.00 0.00 34.83 4.83
2615 3700 3.942829 AGTTGTAGGATGTCATGTGGTG 58.057 45.455 0.00 0.00 0.00 4.17
2625 3710 5.067413 ACGGTGTCACTATAGTTGTAGGATG 59.933 44.000 1.56 0.00 0.00 3.51
2629 3714 6.426980 TGTACGGTGTCACTATAGTTGTAG 57.573 41.667 1.56 0.00 0.00 2.74
2634 3719 4.763793 ACAGTTGTACGGTGTCACTATAGT 59.236 41.667 0.00 0.00 0.00 2.12
2651 3736 6.641314 CAGTACCTACAACAGAAGTACAGTTG 59.359 42.308 14.74 14.74 46.54 3.16
2695 3780 0.107312 GCTGCACAGGATCTGATGGT 60.107 55.000 0.00 0.00 35.18 3.55
2920 4007 2.357009 GCACCACTCAATATGCCAGAAG 59.643 50.000 0.00 0.00 31.71 2.85
2964 4051 6.017275 GCTCATAATCTTAGCAGAAGCACAAT 60.017 38.462 0.00 0.00 45.49 2.71
3056 4145 1.888436 CTGGAGACGGCTGGCTAACA 61.888 60.000 0.00 2.40 0.00 2.41
3218 4318 7.012138 GCAGGAATAATCATACATGCCTATCAG 59.988 40.741 0.00 0.00 0.00 2.90
3225 4325 5.240183 ACACAGCAGGAATAATCATACATGC 59.760 40.000 0.00 0.00 0.00 4.06
3326 4426 0.962356 AAGGATGCCGCAAGACAAGG 60.962 55.000 0.00 0.00 43.02 3.61
3359 4459 1.884756 TCGTCAACACAAACAAACGC 58.115 45.000 0.00 0.00 0.00 4.84
3376 4476 3.365364 GGAAGGAAGCACACAAGAAATCG 60.365 47.826 0.00 0.00 0.00 3.34
3378 4478 3.837355 AGGAAGGAAGCACACAAGAAAT 58.163 40.909 0.00 0.00 0.00 2.17
3390 4490 3.270877 CCGACCAATACAAGGAAGGAAG 58.729 50.000 0.00 0.00 0.00 3.46
3410 4510 1.896220 TTCATGGCAGTGAGACAACC 58.104 50.000 0.00 0.00 39.98 3.77
3429 4529 1.609208 GTCAGGTGACAACATGCCTT 58.391 50.000 5.21 0.00 44.18 4.35
3440 4540 4.890158 TTTAGAAGATGCTGTCAGGTGA 57.110 40.909 1.14 0.00 0.00 4.02
3462 4562 3.245371 TGAGAGACTTGCCCATGGAATTT 60.245 43.478 15.22 0.00 0.00 1.82
3467 4567 0.393537 GGTGAGAGACTTGCCCATGG 60.394 60.000 4.14 4.14 0.00 3.66
3469 4569 1.064906 CATGGTGAGAGACTTGCCCAT 60.065 52.381 0.00 0.00 33.06 4.00
3470 4570 0.325933 CATGGTGAGAGACTTGCCCA 59.674 55.000 0.00 0.00 0.00 5.36
3471 4571 0.393537 CCATGGTGAGAGACTTGCCC 60.394 60.000 2.57 0.00 0.00 5.36
3472 4572 0.393537 CCCATGGTGAGAGACTTGCC 60.394 60.000 11.73 0.00 0.00 4.52
3473 4573 0.615331 TCCCATGGTGAGAGACTTGC 59.385 55.000 11.73 0.00 0.00 4.01
3475 4575 2.630889 TCTCCCATGGTGAGAGACTT 57.369 50.000 22.10 0.00 34.03 3.01
3476 4576 2.023598 TGATCTCCCATGGTGAGAGACT 60.024 50.000 26.77 16.64 41.85 3.24
3477 4577 2.392662 TGATCTCCCATGGTGAGAGAC 58.607 52.381 26.77 23.21 41.85 3.36
3478 4578 2.854736 TGATCTCCCATGGTGAGAGA 57.145 50.000 26.77 22.90 41.85 3.10
3479 4579 3.741249 CATTGATCTCCCATGGTGAGAG 58.259 50.000 26.77 19.43 41.85 3.20
3498 5814 0.321387 CGAGGAGCCATAGCATGCAT 60.321 55.000 21.98 8.63 43.56 3.96
3503 5819 2.060383 AGCACGAGGAGCCATAGCA 61.060 57.895 0.00 0.00 43.56 3.49
3551 5876 2.854079 TATGGTGAACGTCGTCGCGG 62.854 60.000 6.13 0.00 41.18 6.46
3552 5877 1.461317 CTATGGTGAACGTCGTCGCG 61.461 60.000 0.00 0.00 41.18 5.87
3983 6335 3.431346 GGCTAGCATGAGATGTTGACTGA 60.431 47.826 18.24 0.00 0.00 3.41
4032 6396 2.586079 CGCTGCTCCATACACCGG 60.586 66.667 0.00 0.00 0.00 5.28
4033 6397 2.167219 CACGCTGCTCCATACACCG 61.167 63.158 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.