Multiple sequence alignment - TraesCS5B01G275200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G275200 chr5B 100.000 4302 0 0 1 4302 461142524 461138223 0.000000e+00 7945.0
1 TraesCS5B01G275200 chr5B 77.531 405 68 15 3908 4291 263777842 263778244 5.600000e-54 222.0
2 TraesCS5B01G275200 chr5B 89.041 146 15 1 1 146 490542397 490542253 3.420000e-41 180.0
3 TraesCS5B01G275200 chr5B 79.381 194 39 1 4108 4300 79071074 79070881 7.500000e-28 135.0
4 TraesCS5B01G275200 chr5B 82.432 148 24 2 1085 1231 267760969 267760823 1.260000e-25 128.0
5 TraesCS5B01G275200 chr5D 91.851 3755 193 59 111 3811 384349050 384345355 0.000000e+00 5134.0
6 TraesCS5B01G275200 chr5D 81.361 338 49 10 3902 4228 384345174 384344840 3.300000e-66 263.0
7 TraesCS5B01G275200 chr5D 87.143 70 9 0 4021 4090 446495436 446495367 3.570000e-11 80.5
8 TraesCS5B01G275200 chr5A 88.939 1980 126 43 1871 3812 485206460 485204536 0.000000e+00 2357.0
9 TraesCS5B01G275200 chr5A 90.051 1568 87 37 179 1718 485208070 485206544 0.000000e+00 1967.0
10 TraesCS5B01G275200 chr5A 90.909 88 6 2 4106 4191 564201926 564201839 2.720000e-22 117.0
11 TraesCS5B01G275200 chr5A 80.822 146 26 2 1085 1229 317240253 317240109 3.520000e-21 113.0
12 TraesCS5B01G275200 chr7D 85.870 184 23 3 4108 4291 386922977 386922797 4.390000e-45 193.0
13 TraesCS5B01G275200 chr7D 89.041 146 15 1 1 146 34477885 34477741 3.420000e-41 180.0
14 TraesCS5B01G275200 chr7D 81.081 185 24 9 4108 4291 17256243 17256417 2.090000e-28 137.0
15 TraesCS5B01G275200 chr7D 82.166 157 23 5 1066 1218 438368463 438368618 3.490000e-26 130.0
16 TraesCS5B01G275200 chr7B 89.041 146 15 1 1 146 553880065 553880209 3.420000e-41 180.0
17 TraesCS5B01G275200 chr7B 89.041 146 15 1 1 146 700356090 700355946 3.420000e-41 180.0
18 TraesCS5B01G275200 chr7B 83.708 178 26 2 4107 4281 382270120 382269943 9.570000e-37 165.0
19 TraesCS5B01G275200 chr7B 80.982 163 26 4 1066 1224 455272208 455272047 1.620000e-24 124.0
20 TraesCS5B01G275200 chr6D 89.041 146 15 1 1 146 121348628 121348772 3.420000e-41 180.0
21 TraesCS5B01G275200 chr6D 79.412 204 40 2 3899 4101 69293076 69293278 4.480000e-30 143.0
22 TraesCS5B01G275200 chr6D 78.652 89 17 2 2461 2548 465213445 465213358 1.670000e-04 58.4
23 TraesCS5B01G275200 chr4B 89.041 146 15 1 1 146 627251959 627251815 3.420000e-41 180.0
24 TraesCS5B01G275200 chr3B 89.041 146 15 1 1 146 449312847 449312703 3.420000e-41 180.0
25 TraesCS5B01G275200 chr3A 89.041 146 15 1 1 146 141958353 141958497 3.420000e-41 180.0
26 TraesCS5B01G275200 chr1B 89.041 146 15 1 1 146 119486798 119486654 3.420000e-41 180.0
27 TraesCS5B01G275200 chr4D 84.746 177 22 5 4120 4293 47434460 47434286 5.720000e-39 172.0
28 TraesCS5B01G275200 chr4D 97.561 41 1 0 4059 4099 65147010 65146970 2.150000e-08 71.3
29 TraesCS5B01G275200 chr7A 81.865 193 33 2 3910 4101 515220344 515220535 1.240000e-35 161.0
30 TraesCS5B01G275200 chr7A 82.353 187 29 4 4108 4291 42799609 42799794 4.450000e-35 159.0
31 TraesCS5B01G275200 chr7A 83.942 137 19 3 1085 1218 489163067 489163203 1.260000e-25 128.0
32 TraesCS5B01G275200 chr2A 81.481 162 27 3 4132 4291 54469089 54468929 3.490000e-26 130.0
33 TraesCS5B01G275200 chr2A 100.000 29 0 0 2522 2550 763313663 763313635 2.000000e-03 54.7
34 TraesCS5B01G275200 chrUn 82.677 127 22 0 3973 4099 477869696 477869822 3.520000e-21 113.0
35 TraesCS5B01G275200 chr2D 82.677 127 22 0 3973 4099 10233301 10233175 3.520000e-21 113.0
36 TraesCS5B01G275200 chr2D 82.677 127 22 0 3973 4099 10304830 10304704 3.520000e-21 113.0
37 TraesCS5B01G275200 chr2D 80.667 150 23 3 1084 1230 417543866 417544012 1.260000e-20 111.0
38 TraesCS5B01G275200 chr2D 93.478 46 3 0 4222 4267 382467001 382467046 7.720000e-08 69.4
39 TraesCS5B01G275200 chr2D 96.970 33 1 0 2517 2549 636205943 636205975 6.010000e-04 56.5
40 TraesCS5B01G275200 chr2B 80.667 150 23 3 1084 1230 489418817 489418963 1.260000e-20 111.0
41 TraesCS5B01G275200 chr2B 96.970 33 1 0 2517 2549 794263933 794263965 6.010000e-04 56.5
42 TraesCS5B01G275200 chr2B 100.000 29 0 0 2522 2550 794866875 794866847 2.000000e-03 54.7
43 TraesCS5B01G275200 chr3D 80.220 91 17 1 4010 4099 3038727 3038637 2.780000e-07 67.6
44 TraesCS5B01G275200 chr6A 80.233 86 15 2 2464 2548 611860929 611860845 3.590000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G275200 chr5B 461138223 461142524 4301 True 7945.0 7945 100.000 1 4302 1 chr5B.!!$R3 4301
1 TraesCS5B01G275200 chr5D 384344840 384349050 4210 True 2698.5 5134 86.606 111 4228 2 chr5D.!!$R2 4117
2 TraesCS5B01G275200 chr5A 485204536 485208070 3534 True 2162.0 2357 89.495 179 3812 2 chr5A.!!$R3 3633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 492 0.110295 TGCACCACTACAGCACCATT 59.890 50.0 0.0 0.0 32.55 3.16 F
1308 1344 0.036765 TGTATGCACGACCAGTTCCC 60.037 55.0 0.0 0.0 0.00 3.97 F
2405 2467 0.176680 ATGCTGGCTACTGGAAGACG 59.823 55.0 0.0 0.0 37.43 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1487 1527 0.622136 TGCATGAAGTCCTCCTGCAT 59.378 50.0 0.00 0.00 46.80 3.96 R
2616 2679 0.030773 GCTTAGCGCAAATTAGGGGC 59.969 55.0 11.47 10.06 43.74 5.80 R
4208 4408 0.035439 ATACGGAAACCTGTGCCCTG 60.035 55.0 0.00 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.448207 AAAAATAATCTGCAGAGGAGAAGC 57.552 37.500 22.96 0.00 0.00 3.86
52 53 4.767578 AATAATCTGCAGAGGAGAAGCA 57.232 40.909 22.96 0.00 36.72 3.91
53 54 4.978438 ATAATCTGCAGAGGAGAAGCAT 57.022 40.909 22.96 0.00 37.68 3.79
54 55 3.648507 AATCTGCAGAGGAGAAGCATT 57.351 42.857 22.96 5.05 37.68 3.56
55 56 3.648507 ATCTGCAGAGGAGAAGCATTT 57.351 42.857 22.96 0.00 37.68 2.32
56 57 3.430042 TCTGCAGAGGAGAAGCATTTT 57.570 42.857 13.74 0.00 37.68 1.82
57 58 3.759581 TCTGCAGAGGAGAAGCATTTTT 58.240 40.909 13.74 0.00 37.68 1.94
58 59 3.504906 TCTGCAGAGGAGAAGCATTTTTG 59.495 43.478 13.74 0.00 37.68 2.44
59 60 3.225104 TGCAGAGGAGAAGCATTTTTGT 58.775 40.909 0.00 0.00 32.55 2.83
60 61 3.254166 TGCAGAGGAGAAGCATTTTTGTC 59.746 43.478 0.00 0.00 32.55 3.18
61 62 3.254166 GCAGAGGAGAAGCATTTTTGTCA 59.746 43.478 0.00 0.00 0.00 3.58
62 63 4.082354 GCAGAGGAGAAGCATTTTTGTCAT 60.082 41.667 0.00 0.00 0.00 3.06
63 64 5.566230 GCAGAGGAGAAGCATTTTTGTCATT 60.566 40.000 0.00 0.00 0.00 2.57
64 65 6.349611 GCAGAGGAGAAGCATTTTTGTCATTA 60.350 38.462 0.00 0.00 0.00 1.90
65 66 7.596494 CAGAGGAGAAGCATTTTTGTCATTAA 58.404 34.615 0.00 0.00 0.00 1.40
66 67 8.084073 CAGAGGAGAAGCATTTTTGTCATTAAA 58.916 33.333 0.00 0.00 0.00 1.52
67 68 8.641541 AGAGGAGAAGCATTTTTGTCATTAAAA 58.358 29.630 0.00 0.00 0.00 1.52
68 69 9.260002 GAGGAGAAGCATTTTTGTCATTAAAAA 57.740 29.630 0.00 0.00 41.94 1.94
69 70 9.783081 AGGAGAAGCATTTTTGTCATTAAAAAT 57.217 25.926 0.00 0.00 45.92 1.82
93 94 9.903682 AATCAAATCATTTCTACACAGTCAAAG 57.096 29.630 0.00 0.00 0.00 2.77
94 95 7.362662 TCAAATCATTTCTACACAGTCAAAGC 58.637 34.615 0.00 0.00 0.00 3.51
95 96 6.882610 AATCATTTCTACACAGTCAAAGCA 57.117 33.333 0.00 0.00 0.00 3.91
96 97 6.882610 ATCATTTCTACACAGTCAAAGCAA 57.117 33.333 0.00 0.00 0.00 3.91
97 98 6.882610 TCATTTCTACACAGTCAAAGCAAT 57.117 33.333 0.00 0.00 0.00 3.56
98 99 6.902341 TCATTTCTACACAGTCAAAGCAATC 58.098 36.000 0.00 0.00 0.00 2.67
99 100 6.486320 TCATTTCTACACAGTCAAAGCAATCA 59.514 34.615 0.00 0.00 0.00 2.57
100 101 6.691754 TTTCTACACAGTCAAAGCAATCAA 57.308 33.333 0.00 0.00 0.00 2.57
101 102 6.691754 TTCTACACAGTCAAAGCAATCAAA 57.308 33.333 0.00 0.00 0.00 2.69
102 103 6.882610 TCTACACAGTCAAAGCAATCAAAT 57.117 33.333 0.00 0.00 0.00 2.32
103 104 7.275888 TCTACACAGTCAAAGCAATCAAATT 57.724 32.000 0.00 0.00 0.00 1.82
104 105 8.389779 TCTACACAGTCAAAGCAATCAAATTA 57.610 30.769 0.00 0.00 0.00 1.40
105 106 8.845227 TCTACACAGTCAAAGCAATCAAATTAA 58.155 29.630 0.00 0.00 0.00 1.40
106 107 7.935338 ACACAGTCAAAGCAATCAAATTAAG 57.065 32.000 0.00 0.00 0.00 1.85
107 108 6.925165 ACACAGTCAAAGCAATCAAATTAAGG 59.075 34.615 0.00 0.00 0.00 2.69
108 109 5.928264 ACAGTCAAAGCAATCAAATTAAGGC 59.072 36.000 0.00 0.00 0.00 4.35
109 110 5.927689 CAGTCAAAGCAATCAAATTAAGGCA 59.072 36.000 0.00 0.00 0.00 4.75
127 128 2.224548 GGCATACACTCCCACCCTTATC 60.225 54.545 0.00 0.00 0.00 1.75
136 137 1.472480 CCCACCCTTATCAGCGTTTTG 59.528 52.381 0.00 0.00 0.00 2.44
147 148 7.273381 CCTTATCAGCGTTTTGAACCTATTTTG 59.727 37.037 0.00 0.00 0.00 2.44
152 155 5.010617 AGCGTTTTGAACCTATTTTGGACAT 59.989 36.000 0.00 0.00 0.00 3.06
161 164 7.234371 TGAACCTATTTTGGACATCAAATGGAA 59.766 33.333 0.00 0.00 43.95 3.53
205 212 4.697756 TTGCAGGAAGACCCCGCG 62.698 66.667 0.00 0.00 37.75 6.46
213 220 3.622060 AAGACCCCGCGGAACATGG 62.622 63.158 30.73 21.71 0.00 3.66
221 228 1.153086 GCGGAACATGGATCCAGCT 60.153 57.895 21.33 6.66 36.74 4.24
222 229 1.442526 GCGGAACATGGATCCAGCTG 61.443 60.000 21.33 16.72 36.74 4.24
223 230 0.178767 CGGAACATGGATCCAGCTGA 59.821 55.000 21.33 1.21 36.74 4.26
224 231 1.407299 CGGAACATGGATCCAGCTGAA 60.407 52.381 21.33 0.00 36.74 3.02
226 233 1.674962 GAACATGGATCCAGCTGAAGC 59.325 52.381 21.33 0.00 42.49 3.86
347 360 6.645415 ACACATGACTACAACAAGTAAGCTAC 59.355 38.462 0.00 0.00 30.92 3.58
389 402 2.427753 GGCCGGGCAGGAGAATAG 59.572 66.667 25.33 0.00 45.00 1.73
391 404 1.527370 GCCGGGCAGGAGAATAGTT 59.473 57.895 15.62 0.00 45.00 2.24
392 405 0.756903 GCCGGGCAGGAGAATAGTTA 59.243 55.000 15.62 0.00 45.00 2.24
400 413 4.686554 GGCAGGAGAATAGTTATTAGCACG 59.313 45.833 0.00 0.00 0.00 5.34
401 414 5.290386 GCAGGAGAATAGTTATTAGCACGT 58.710 41.667 0.00 0.00 0.00 4.49
402 415 6.444633 GCAGGAGAATAGTTATTAGCACGTA 58.555 40.000 0.00 0.00 0.00 3.57
447 460 3.733380 GCAGCAGCGATCGAGATATACAT 60.733 47.826 21.57 0.00 0.00 2.29
448 461 4.496507 GCAGCAGCGATCGAGATATACATA 60.497 45.833 21.57 0.00 0.00 2.29
449 462 4.966970 CAGCAGCGATCGAGATATACATAC 59.033 45.833 21.57 0.00 0.00 2.39
450 463 4.636206 AGCAGCGATCGAGATATACATACA 59.364 41.667 21.57 0.00 0.00 2.29
451 464 4.966970 GCAGCGATCGAGATATACATACAG 59.033 45.833 21.57 0.00 0.00 2.74
474 491 0.329261 ATGCACCACTACAGCACCAT 59.671 50.000 0.00 0.00 41.60 3.55
475 492 0.110295 TGCACCACTACAGCACCATT 59.890 50.000 0.00 0.00 32.55 3.16
476 493 1.349357 TGCACCACTACAGCACCATTA 59.651 47.619 0.00 0.00 32.55 1.90
477 494 1.737793 GCACCACTACAGCACCATTAC 59.262 52.381 0.00 0.00 0.00 1.89
490 507 4.101898 AGCACCATTACGTACCATATCCAA 59.898 41.667 0.00 0.00 0.00 3.53
574 592 3.719924 CCACTATATACCGCGGTGAAAA 58.280 45.455 40.02 21.73 0.00 2.29
644 662 3.207669 GGAGGCCTTGATGCAGCG 61.208 66.667 6.77 0.00 0.00 5.18
659 677 2.223688 TGCAGCGTGCTAAAAACACATT 60.224 40.909 10.54 0.00 45.31 2.71
669 687 4.434588 GCTAAAAACACATTGATCGATCGC 59.565 41.667 20.03 8.83 0.00 4.58
755 777 3.134458 CCGGCACATTTTCTATCTCCTC 58.866 50.000 0.00 0.00 0.00 3.71
832 854 1.144969 CCACTTTGACGTACGCACAT 58.855 50.000 16.72 0.00 0.00 3.21
989 1011 3.810896 GTTGGTTGATCGGCCGCC 61.811 66.667 23.51 16.59 0.00 6.13
1008 1030 2.487986 GCCTGGTGATTAGATGGAAGGG 60.488 54.545 0.00 0.00 0.00 3.95
1251 1279 4.734917 ACTACGTACTCAGTCAGAAATGC 58.265 43.478 0.00 0.00 0.00 3.56
1254 1282 3.182967 CGTACTCAGTCAGAAATGCTCC 58.817 50.000 0.00 0.00 0.00 4.70
1308 1344 0.036765 TGTATGCACGACCAGTTCCC 60.037 55.000 0.00 0.00 0.00 3.97
1350 1390 4.503123 CCATGGTTTTGTTTTTCTCCCCTC 60.503 45.833 2.57 0.00 0.00 4.30
1351 1391 3.989056 TGGTTTTGTTTTTCTCCCCTCT 58.011 40.909 0.00 0.00 0.00 3.69
1352 1392 5.132043 TGGTTTTGTTTTTCTCCCCTCTA 57.868 39.130 0.00 0.00 0.00 2.43
1354 1394 4.280174 GGTTTTGTTTTTCTCCCCTCTACC 59.720 45.833 0.00 0.00 0.00 3.18
1356 1396 4.799715 TTGTTTTTCTCCCCTCTACCAA 57.200 40.909 0.00 0.00 0.00 3.67
1357 1397 4.367039 TGTTTTTCTCCCCTCTACCAAG 57.633 45.455 0.00 0.00 0.00 3.61
1358 1398 3.720002 TGTTTTTCTCCCCTCTACCAAGT 59.280 43.478 0.00 0.00 0.00 3.16
1359 1399 4.909088 TGTTTTTCTCCCCTCTACCAAGTA 59.091 41.667 0.00 0.00 0.00 2.24
1360 1400 5.221783 TGTTTTTCTCCCCTCTACCAAGTAC 60.222 44.000 0.00 0.00 0.00 2.73
1361 1401 2.842645 TCTCCCCTCTACCAAGTACC 57.157 55.000 0.00 0.00 0.00 3.34
1362 1402 2.005350 TCTCCCCTCTACCAAGTACCA 58.995 52.381 0.00 0.00 0.00 3.25
1487 1527 4.049186 GCGTTTTTCCTCGAGAGCATATA 58.951 43.478 15.71 0.00 0.00 0.86
1515 1555 6.426328 CAGGAGGACTTCATGCATAGATAAAC 59.574 42.308 0.00 0.00 29.94 2.01
1617 1661 8.428852 AGGTATTTAAAACCTTCATGTTTTGCT 58.571 29.630 13.23 0.83 45.26 3.91
1729 1774 1.304134 GGGGAACAGGATTTGCGGT 60.304 57.895 0.00 0.00 0.00 5.68
1775 1820 5.591099 ACCATCGAACAATTAATTGGATGC 58.409 37.500 27.43 14.52 41.96 3.91
1781 1826 5.220265 CGAACAATTAATTGGATGCTTGCAC 60.220 40.000 27.43 4.93 41.96 4.57
1928 1974 5.391312 ACTTAACATGCACCCTTCAATTC 57.609 39.130 0.00 0.00 0.00 2.17
1929 1975 4.832266 ACTTAACATGCACCCTTCAATTCA 59.168 37.500 0.00 0.00 0.00 2.57
1934 1980 4.040706 ACATGCACCCTTCAATTCATTGTT 59.959 37.500 0.00 0.00 38.84 2.83
2084 2131 4.040461 TCCTTCTCAGACAACTTACCCAAG 59.960 45.833 0.00 0.00 37.81 3.61
2117 2164 1.337118 ATGAGCAGAGCCCTACTAGC 58.663 55.000 0.00 0.00 0.00 3.42
2127 2174 5.302059 CAGAGCCCTACTAGCAGTTGTATAA 59.698 44.000 0.00 0.00 0.00 0.98
2165 2216 8.630054 ACTAGCAAACAATTAACTGGATGTTA 57.370 30.769 0.00 0.00 39.89 2.41
2204 2255 9.037737 GTATGCATACACCTAGAATTACGAAAA 57.962 33.333 28.08 0.00 33.52 2.29
2210 2261 5.180680 ACACCTAGAATTACGAAAAAGTGCC 59.819 40.000 0.00 0.00 0.00 5.01
2405 2467 0.176680 ATGCTGGCTACTGGAAGACG 59.823 55.000 0.00 0.00 37.43 4.18
2414 2476 1.215647 CTGGAAGACGACGGGGAAG 59.784 63.158 0.00 0.00 34.07 3.46
2558 2620 4.020617 CGCCTCCACCTGAAGCCA 62.021 66.667 0.00 0.00 0.00 4.75
2584 2646 7.502561 AGCCTCCAAATCAAACAAGGTATATAC 59.497 37.037 4.14 4.14 0.00 1.47
2591 2654 9.693739 AAATCAAACAAGGTATATACACATCCA 57.306 29.630 14.70 0.00 0.00 3.41
2594 2657 9.693739 TCAAACAAGGTATATACACATCCATTT 57.306 29.630 14.70 3.35 0.00 2.32
2619 2682 7.744087 AAATTTTCTTTTAGAATGTTGGCCC 57.256 32.000 0.00 0.00 33.67 5.80
2620 2683 4.882842 TTTCTTTTAGAATGTTGGCCCC 57.117 40.909 0.00 0.00 33.67 5.80
2652 2721 1.308998 AGCGGTTGCATGCTAATACC 58.691 50.000 20.33 18.07 46.23 2.73
2654 2723 1.268539 GCGGTTGCATGCTAATACCAC 60.269 52.381 20.33 10.96 42.15 4.16
2657 2726 3.742954 CGGTTGCATGCTAATACCACCTA 60.743 47.826 20.33 0.00 0.00 3.08
2661 2730 4.703897 TGCATGCTAATACCACCTAACTC 58.296 43.478 20.33 0.00 0.00 3.01
2664 2733 6.270000 TGCATGCTAATACCACCTAACTCTAT 59.730 38.462 20.33 0.00 0.00 1.98
2665 2734 6.591834 GCATGCTAATACCACCTAACTCTATG 59.408 42.308 11.37 0.00 0.00 2.23
2666 2735 7.671302 CATGCTAATACCACCTAACTCTATGT 58.329 38.462 0.00 0.00 0.00 2.29
2667 2736 7.050970 TGCTAATACCACCTAACTCTATGTG 57.949 40.000 0.00 0.00 0.00 3.21
2668 2737 5.927115 GCTAATACCACCTAACTCTATGTGC 59.073 44.000 0.00 0.00 0.00 4.57
2673 2742 6.368779 ACCACCTAACTCTATGTGCTTTTA 57.631 37.500 0.00 0.00 0.00 1.52
2713 2790 6.493166 TCAATGTTTCTAGGATGAATGGGTT 58.507 36.000 0.00 0.00 0.00 4.11
2716 2793 6.381498 TGTTTCTAGGATGAATGGGTTGTA 57.619 37.500 0.00 0.00 0.00 2.41
3316 3402 3.548415 GCTACTGATGAGTGTACGTAGGC 60.548 52.174 0.00 0.00 33.21 3.93
3364 3455 2.159282 AGGCGATTGTTGACTACGTAGG 60.159 50.000 25.63 8.78 0.00 3.18
3365 3456 2.159338 GGCGATTGTTGACTACGTAGGA 60.159 50.000 25.63 9.81 0.00 2.94
3416 3507 6.288426 TCTAGTCTCTTCGTTGTATCATCG 57.712 41.667 0.00 0.00 0.00 3.84
3428 3523 5.641709 GTTGTATCATCGTCTTCTCTGTCA 58.358 41.667 0.00 0.00 0.00 3.58
3432 3527 6.598064 TGTATCATCGTCTTCTCTGTCAGTTA 59.402 38.462 0.00 0.00 0.00 2.24
3499 3598 3.751698 CAGACTGTTTGCCTTACCTAACC 59.248 47.826 0.00 0.00 0.00 2.85
3523 3622 3.494626 CGCGCTTGTATACATTCAGGATT 59.505 43.478 6.36 0.00 0.00 3.01
3525 3624 5.388475 CGCGCTTGTATACATTCAGGATTAC 60.388 44.000 6.36 0.00 0.00 1.89
3570 3670 4.932268 TTACTTGTACTTGTTATGCGCC 57.068 40.909 4.18 0.00 0.00 6.53
3660 3760 3.746751 CGAATTCAGGCCTCAATGGAGAT 60.747 47.826 1.18 0.00 44.26 2.75
3666 3766 3.117738 CAGGCCTCAATGGAGATAACCTT 60.118 47.826 0.00 0.00 44.26 3.50
3717 3817 3.663815 GACCCCTCTCCTCGAGCCA 62.664 68.421 6.99 0.00 38.49 4.75
3718 3818 2.364317 CCCCTCTCCTCGAGCCAA 60.364 66.667 6.99 0.00 38.49 4.52
3721 3821 1.333636 CCCTCTCCTCGAGCCAATGT 61.334 60.000 6.99 0.00 38.49 2.71
3726 3826 0.687757 TCCTCGAGCCAATGTAGCCT 60.688 55.000 6.99 0.00 0.00 4.58
3731 3831 1.137872 CGAGCCAATGTAGCCTCTCTT 59.862 52.381 0.00 0.00 0.00 2.85
3736 3836 2.223923 CCAATGTAGCCTCTCTTCTCGG 60.224 54.545 0.00 0.00 0.00 4.63
3738 3838 2.217510 TGTAGCCTCTCTTCTCGGTT 57.782 50.000 0.00 0.00 0.00 4.44
3745 3845 0.705253 TCTCTTCTCGGTTCCCTCCT 59.295 55.000 0.00 0.00 0.00 3.69
3751 3851 3.782443 CGGTTCCCTCCTTCCCGG 61.782 72.222 0.00 0.00 35.11 5.73
3754 3854 1.612739 GTTCCCTCCTTCCCGGTCT 60.613 63.158 0.00 0.00 0.00 3.85
3758 3858 0.105658 CCCTCCTTCCCGGTCTGATA 60.106 60.000 0.00 0.00 0.00 2.15
3773 3873 5.207110 GTCTGATATAGAGCTTTGAGCCA 57.793 43.478 0.00 0.00 43.77 4.75
3796 3896 4.811364 GCCCCTCTCCTTGCTGCC 62.811 72.222 0.00 0.00 0.00 4.85
3798 3898 3.710722 CCCTCTCCTTGCTGCCGT 61.711 66.667 0.00 0.00 0.00 5.68
3839 3958 4.101448 CGGTGGGGCCTTCCTCTG 62.101 72.222 0.84 0.00 32.58 3.35
3859 3991 2.390599 CGTGGTTGCGGTGGAGATG 61.391 63.158 0.00 0.00 0.00 2.90
3860 3992 2.040544 GTGGTTGCGGTGGAGATGG 61.041 63.158 0.00 0.00 0.00 3.51
3867 4040 3.499737 GGTGGAGATGGCGCAACG 61.500 66.667 10.83 0.00 0.00 4.10
3892 4065 3.233980 CCCCTCCGCCATCGATGA 61.234 66.667 26.86 5.64 38.10 2.92
3921 4112 4.176752 GGGGGTGTGGCTCCGATC 62.177 72.222 0.00 0.00 39.17 3.69
3944 4135 3.413522 GGTTTCCCGACAGTAGACG 57.586 57.895 0.00 0.00 0.00 4.18
3967 4158 1.274167 GCATATGGGCATGTTGGATGG 59.726 52.381 4.56 0.00 0.00 3.51
3971 4162 2.440065 GGCATGTTGGATGGCGGA 60.440 61.111 0.00 0.00 34.93 5.54
3983 4174 0.692419 ATGGCGGAGGAGGTTGATCT 60.692 55.000 0.00 0.00 0.00 2.75
4003 4194 0.909610 GGTGGTCCAGACAGGGATGA 60.910 60.000 0.00 0.00 39.62 2.92
4026 4217 2.742774 GTGAATTTGCCAACGAAAGCT 58.257 42.857 0.00 0.00 0.00 3.74
4028 4219 3.555547 GTGAATTTGCCAACGAAAGCTTT 59.444 39.130 12.53 12.53 0.00 3.51
4038 4229 2.024414 ACGAAAGCTTTGTTCAGCCTT 58.976 42.857 18.30 0.00 41.12 4.35
4055 4246 0.105964 CTTGGACAGAACCGTCACCA 59.894 55.000 0.00 0.00 37.66 4.17
4057 4248 1.668151 GGACAGAACCGTCACCAGC 60.668 63.158 0.00 0.00 37.66 4.85
4085 4276 2.090524 GGGCGTCGTTACCTCGTTG 61.091 63.158 0.00 0.00 0.00 4.10
4086 4277 2.090524 GGCGTCGTTACCTCGTTGG 61.091 63.158 0.00 0.00 42.93 3.77
4099 4290 2.973082 GTTGGAGGCATTGTGGGC 59.027 61.111 0.00 0.00 0.00 5.36
4100 4291 2.676121 TTGGAGGCATTGTGGGCG 60.676 61.111 0.00 0.00 38.57 6.13
4101 4292 3.505790 TTGGAGGCATTGTGGGCGT 62.506 57.895 0.00 0.00 38.57 5.68
4102 4293 3.134127 GGAGGCATTGTGGGCGTC 61.134 66.667 0.00 0.00 43.41 5.19
4103 4294 2.359850 GAGGCATTGTGGGCGTCA 60.360 61.111 0.00 0.00 43.56 4.35
4104 4295 2.360350 AGGCATTGTGGGCGTCAG 60.360 61.111 0.00 0.00 38.57 3.51
4106 4297 3.058160 GCATTGTGGGCGTCAGCT 61.058 61.111 0.00 0.00 44.37 4.24
4107 4298 2.629656 GCATTGTGGGCGTCAGCTT 61.630 57.895 0.00 0.00 44.37 3.74
4108 4299 1.959085 CATTGTGGGCGTCAGCTTT 59.041 52.632 0.00 0.00 44.37 3.51
4110 4301 0.598065 ATTGTGGGCGTCAGCTTTTC 59.402 50.000 0.00 0.00 44.37 2.29
4112 4303 1.896660 GTGGGCGTCAGCTTTTCCA 60.897 57.895 0.00 0.00 44.37 3.53
4113 4304 1.600636 TGGGCGTCAGCTTTTCCAG 60.601 57.895 0.00 0.00 44.37 3.86
4114 4305 1.302511 GGGCGTCAGCTTTTCCAGA 60.303 57.895 0.00 0.00 44.37 3.86
4116 4307 0.729690 GGCGTCAGCTTTTCCAGATC 59.270 55.000 0.00 0.00 44.37 2.75
4117 4308 1.442769 GCGTCAGCTTTTCCAGATCA 58.557 50.000 0.00 0.00 41.01 2.92
4118 4309 1.806542 GCGTCAGCTTTTCCAGATCAA 59.193 47.619 0.00 0.00 41.01 2.57
4119 4310 2.226437 GCGTCAGCTTTTCCAGATCAAA 59.774 45.455 0.00 0.00 41.01 2.69
4121 4312 4.409570 CGTCAGCTTTTCCAGATCAAATG 58.590 43.478 0.00 0.00 0.00 2.32
4122 4313 4.154737 CGTCAGCTTTTCCAGATCAAATGA 59.845 41.667 0.00 0.00 0.00 2.57
4123 4314 5.163683 CGTCAGCTTTTCCAGATCAAATGAT 60.164 40.000 0.00 0.00 37.51 2.45
4126 4317 4.117685 GCTTTTCCAGATCAAATGATGGC 58.882 43.478 0.00 0.00 34.37 4.40
4127 4318 4.357142 CTTTTCCAGATCAAATGATGGCG 58.643 43.478 0.00 0.00 34.37 5.69
4129 4320 2.842457 TCCAGATCAAATGATGGCGAG 58.158 47.619 0.00 0.00 34.37 5.03
4130 4321 2.435437 TCCAGATCAAATGATGGCGAGA 59.565 45.455 0.00 0.00 34.37 4.04
4131 4322 3.072038 TCCAGATCAAATGATGGCGAGAT 59.928 43.478 0.00 0.00 34.37 2.75
4132 4323 3.819337 CCAGATCAAATGATGGCGAGATT 59.181 43.478 0.00 0.00 34.37 2.40
4133 4324 4.083431 CCAGATCAAATGATGGCGAGATTC 60.083 45.833 0.00 0.00 34.37 2.52
4134 4325 4.514066 CAGATCAAATGATGGCGAGATTCA 59.486 41.667 0.00 0.00 34.37 2.57
4136 4327 4.823790 TCAAATGATGGCGAGATTCATG 57.176 40.909 0.00 0.00 30.76 3.07
4138 4329 2.265589 ATGATGGCGAGATTCATGCA 57.734 45.000 0.00 0.00 0.00 3.96
4139 4330 2.265589 TGATGGCGAGATTCATGCAT 57.734 45.000 0.00 0.00 0.00 3.96
4140 4331 2.148768 TGATGGCGAGATTCATGCATC 58.851 47.619 0.00 0.00 0.00 3.91
4141 4332 1.128136 GATGGCGAGATTCATGCATCG 59.872 52.381 0.00 0.00 38.19 3.84
4180 4380 2.790433 TCTTTGGGGTTGTACATCAGC 58.210 47.619 0.00 0.00 0.00 4.26
4181 4381 2.375174 TCTTTGGGGTTGTACATCAGCT 59.625 45.455 0.00 0.00 0.00 4.24
4182 4382 3.585289 TCTTTGGGGTTGTACATCAGCTA 59.415 43.478 0.00 0.00 0.00 3.32
4207 4407 1.748493 GACAAGTGTTTGGCTTGGTGA 59.252 47.619 9.42 0.00 45.38 4.02
4208 4408 1.476488 ACAAGTGTTTGGCTTGGTGAC 59.524 47.619 9.42 0.00 45.38 3.67
4209 4409 1.476085 CAAGTGTTTGGCTTGGTGACA 59.524 47.619 0.00 0.00 39.53 3.58
4218 4418 1.601759 CTTGGTGACAGGGCACAGG 60.602 63.158 7.68 0.00 44.54 4.00
4220 4420 1.932156 TTGGTGACAGGGCACAGGTT 61.932 55.000 7.68 0.00 44.54 3.50
4228 4428 1.208535 CAGGGCACAGGTTTCCGTATA 59.791 52.381 0.00 0.00 0.00 1.47
4229 4429 1.208776 AGGGCACAGGTTTCCGTATAC 59.791 52.381 0.00 0.00 0.00 1.47
4230 4430 1.208776 GGGCACAGGTTTCCGTATACT 59.791 52.381 0.56 0.00 0.00 2.12
4231 4431 2.355412 GGGCACAGGTTTCCGTATACTT 60.355 50.000 0.56 0.00 0.00 2.24
4232 4432 2.934553 GGCACAGGTTTCCGTATACTTC 59.065 50.000 0.56 0.00 0.00 3.01
4233 4433 3.369157 GGCACAGGTTTCCGTATACTTCT 60.369 47.826 0.56 0.00 0.00 2.85
4234 4434 3.617263 GCACAGGTTTCCGTATACTTCTG 59.383 47.826 0.56 2.73 0.00 3.02
4235 4435 4.181578 CACAGGTTTCCGTATACTTCTGG 58.818 47.826 0.56 0.00 0.00 3.86
4236 4436 3.836562 ACAGGTTTCCGTATACTTCTGGT 59.163 43.478 0.56 0.00 0.00 4.00
4237 4437 4.181578 CAGGTTTCCGTATACTTCTGGTG 58.818 47.826 0.56 0.00 0.00 4.17
4238 4438 2.934553 GGTTTCCGTATACTTCTGGTGC 59.065 50.000 0.56 0.00 0.00 5.01
4239 4439 2.572191 TTCCGTATACTTCTGGTGCG 57.428 50.000 0.56 0.00 0.00 5.34
4240 4440 0.742505 TCCGTATACTTCTGGTGCGG 59.257 55.000 0.56 0.00 38.96 5.69
4241 4441 0.458669 CCGTATACTTCTGGTGCGGT 59.541 55.000 0.56 0.00 35.76 5.68
4242 4442 1.556564 CGTATACTTCTGGTGCGGTG 58.443 55.000 0.56 0.00 0.00 4.94
4243 4443 1.133598 CGTATACTTCTGGTGCGGTGA 59.866 52.381 0.56 0.00 0.00 4.02
4244 4444 2.537401 GTATACTTCTGGTGCGGTGAC 58.463 52.381 0.00 0.00 0.00 3.67
4245 4445 0.249398 ATACTTCTGGTGCGGTGACC 59.751 55.000 0.00 0.00 36.43 4.02
4246 4446 1.116536 TACTTCTGGTGCGGTGACCA 61.117 55.000 1.11 0.00 44.09 4.02
4247 4447 1.227823 CTTCTGGTGCGGTGACCAA 60.228 57.895 1.11 0.00 45.60 3.67
4248 4448 1.227823 TTCTGGTGCGGTGACCAAG 60.228 57.895 1.11 0.00 45.60 3.61
4249 4449 2.669569 CTGGTGCGGTGACCAAGG 60.670 66.667 1.11 0.00 45.60 3.61
4250 4450 3.476031 CTGGTGCGGTGACCAAGGT 62.476 63.158 1.11 0.00 45.60 3.50
4251 4451 2.978010 GGTGCGGTGACCAAGGTG 60.978 66.667 1.11 0.00 35.88 4.00
4252 4452 2.978010 GTGCGGTGACCAAGGTGG 60.978 66.667 1.11 0.00 45.02 4.61
4253 4453 3.164977 TGCGGTGACCAAGGTGGA 61.165 61.111 1.11 0.00 40.96 4.02
4254 4454 2.358737 GCGGTGACCAAGGTGGAG 60.359 66.667 1.11 0.00 40.96 3.86
4255 4455 2.358737 CGGTGACCAAGGTGGAGC 60.359 66.667 1.11 0.00 40.96 4.70
4256 4456 2.358737 GGTGACCAAGGTGGAGCG 60.359 66.667 0.00 0.00 40.96 5.03
4257 4457 2.358737 GTGACCAAGGTGGAGCGG 60.359 66.667 0.18 0.00 40.96 5.52
4258 4458 4.329545 TGACCAAGGTGGAGCGGC 62.330 66.667 0.18 0.00 40.96 6.53
4259 4459 4.329545 GACCAAGGTGGAGCGGCA 62.330 66.667 1.45 0.00 40.96 5.69
4260 4460 3.628646 GACCAAGGTGGAGCGGCAT 62.629 63.158 1.45 0.00 40.96 4.40
4261 4461 3.136123 CCAAGGTGGAGCGGCATG 61.136 66.667 1.45 0.00 40.96 4.06
4262 4462 3.818787 CAAGGTGGAGCGGCATGC 61.819 66.667 9.90 9.90 46.98 4.06
4271 4471 3.826221 GCGGCATGCCATCTAACA 58.174 55.556 34.93 0.00 37.76 2.41
4272 4472 2.334307 GCGGCATGCCATCTAACAT 58.666 52.632 34.93 0.00 37.76 2.71
4273 4473 1.522668 GCGGCATGCCATCTAACATA 58.477 50.000 34.93 0.00 37.76 2.29
4274 4474 2.086869 GCGGCATGCCATCTAACATAT 58.913 47.619 34.93 0.00 37.76 1.78
4275 4475 2.096496 GCGGCATGCCATCTAACATATC 59.904 50.000 34.93 4.60 37.76 1.63
4276 4476 3.337358 CGGCATGCCATCTAACATATCA 58.663 45.455 34.93 0.00 35.37 2.15
4277 4477 3.752747 CGGCATGCCATCTAACATATCAA 59.247 43.478 34.93 0.00 35.37 2.57
4278 4478 4.378770 CGGCATGCCATCTAACATATCAAC 60.379 45.833 34.93 3.07 35.37 3.18
4279 4479 4.378770 GGCATGCCATCTAACATATCAACG 60.379 45.833 32.08 0.00 35.81 4.10
4280 4480 4.452114 GCATGCCATCTAACATATCAACGA 59.548 41.667 6.36 0.00 0.00 3.85
4281 4481 5.615544 GCATGCCATCTAACATATCAACGAC 60.616 44.000 6.36 0.00 0.00 4.34
4282 4482 4.048504 TGCCATCTAACATATCAACGACG 58.951 43.478 0.00 0.00 0.00 5.12
4283 4483 4.202070 TGCCATCTAACATATCAACGACGA 60.202 41.667 0.00 0.00 0.00 4.20
4284 4484 4.148348 GCCATCTAACATATCAACGACGAC 59.852 45.833 0.00 0.00 0.00 4.34
4285 4485 4.378910 CCATCTAACATATCAACGACGACG 59.621 45.833 5.58 5.58 45.75 5.12
4286 4486 4.863152 TCTAACATATCAACGACGACGA 57.137 40.909 15.32 0.00 42.66 4.20
4287 4487 4.829808 TCTAACATATCAACGACGACGAG 58.170 43.478 15.32 6.24 42.66 4.18
4288 4488 3.482722 AACATATCAACGACGACGAGT 57.517 42.857 15.32 0.00 42.66 4.18
4289 4489 3.048942 ACATATCAACGACGACGAGTC 57.951 47.619 15.32 0.00 46.16 3.36
4297 4497 3.713968 GACGACGAGTCTCGATAGC 57.286 57.895 28.33 12.83 46.13 2.97
4298 4498 0.928922 GACGACGAGTCTCGATAGCA 59.071 55.000 28.33 0.00 46.13 3.49
4299 4499 1.326852 GACGACGAGTCTCGATAGCAA 59.673 52.381 28.33 0.00 46.13 3.91
4300 4500 1.736126 ACGACGAGTCTCGATAGCAAA 59.264 47.619 28.33 0.00 43.74 3.68
4301 4501 2.223066 ACGACGAGTCTCGATAGCAAAG 60.223 50.000 28.33 11.50 43.74 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.458064 CAAACTTGCGTACGTAGGTGG 59.542 52.381 20.78 12.79 0.00 4.61
1 2 2.129607 ACAAACTTGCGTACGTAGGTG 58.870 47.619 20.78 18.03 0.00 4.00
2 3 2.514205 ACAAACTTGCGTACGTAGGT 57.486 45.000 15.05 15.05 0.00 3.08
3 4 3.120121 GTGTACAAACTTGCGTACGTAGG 59.880 47.826 17.90 15.67 40.71 3.18
4 5 3.120121 GGTGTACAAACTTGCGTACGTAG 59.880 47.826 17.90 16.24 40.71 3.51
5 6 3.049206 GGTGTACAAACTTGCGTACGTA 58.951 45.455 17.90 10.06 40.71 3.57
6 7 1.860326 GGTGTACAAACTTGCGTACGT 59.140 47.619 17.90 0.00 40.71 3.57
7 8 1.859703 TGGTGTACAAACTTGCGTACG 59.140 47.619 11.84 11.84 40.71 3.67
8 9 3.948196 TTGGTGTACAAACTTGCGTAC 57.052 42.857 0.00 0.00 38.76 3.67
28 29 5.948162 TGCTTCTCCTCTGCAGATTATTTTT 59.052 36.000 18.63 0.00 32.55 1.94
29 30 5.503927 TGCTTCTCCTCTGCAGATTATTTT 58.496 37.500 18.63 0.00 32.55 1.82
30 31 5.108187 TGCTTCTCCTCTGCAGATTATTT 57.892 39.130 18.63 0.00 32.55 1.40
31 32 4.767578 TGCTTCTCCTCTGCAGATTATT 57.232 40.909 18.63 0.00 32.55 1.40
32 33 4.978438 ATGCTTCTCCTCTGCAGATTAT 57.022 40.909 18.63 0.60 40.18 1.28
33 34 4.767578 AATGCTTCTCCTCTGCAGATTA 57.232 40.909 18.63 7.43 40.18 1.75
34 35 3.648507 AATGCTTCTCCTCTGCAGATT 57.351 42.857 18.63 1.87 40.18 2.40
35 36 3.648507 AAATGCTTCTCCTCTGCAGAT 57.351 42.857 18.63 0.00 40.18 2.90
36 37 3.430042 AAAATGCTTCTCCTCTGCAGA 57.570 42.857 17.19 17.19 40.18 4.26
37 38 3.255149 ACAAAAATGCTTCTCCTCTGCAG 59.745 43.478 7.63 7.63 40.18 4.41
38 39 3.225104 ACAAAAATGCTTCTCCTCTGCA 58.775 40.909 0.00 0.00 41.13 4.41
39 40 3.254166 TGACAAAAATGCTTCTCCTCTGC 59.746 43.478 0.00 0.00 0.00 4.26
40 41 5.640189 ATGACAAAAATGCTTCTCCTCTG 57.360 39.130 0.00 0.00 0.00 3.35
41 42 7.765695 TTAATGACAAAAATGCTTCTCCTCT 57.234 32.000 0.00 0.00 0.00 3.69
42 43 8.816640 TTTTAATGACAAAAATGCTTCTCCTC 57.183 30.769 0.00 0.00 0.00 3.71
43 44 9.783081 ATTTTTAATGACAAAAATGCTTCTCCT 57.217 25.926 5.91 0.00 43.21 3.69
67 68 9.903682 CTTTGACTGTGTAGAAATGATTTGATT 57.096 29.630 0.00 0.00 0.00 2.57
68 69 8.025445 GCTTTGACTGTGTAGAAATGATTTGAT 58.975 33.333 0.00 0.00 0.00 2.57
69 70 7.013178 TGCTTTGACTGTGTAGAAATGATTTGA 59.987 33.333 0.00 0.00 0.00 2.69
70 71 7.140705 TGCTTTGACTGTGTAGAAATGATTTG 58.859 34.615 0.00 0.00 0.00 2.32
71 72 7.275888 TGCTTTGACTGTGTAGAAATGATTT 57.724 32.000 0.00 0.00 0.00 2.17
72 73 6.882610 TGCTTTGACTGTGTAGAAATGATT 57.117 33.333 0.00 0.00 0.00 2.57
73 74 6.882610 TTGCTTTGACTGTGTAGAAATGAT 57.117 33.333 0.00 0.00 0.00 2.45
74 75 6.486320 TGATTGCTTTGACTGTGTAGAAATGA 59.514 34.615 0.00 0.00 0.00 2.57
75 76 6.671190 TGATTGCTTTGACTGTGTAGAAATG 58.329 36.000 0.00 0.00 0.00 2.32
76 77 6.882610 TGATTGCTTTGACTGTGTAGAAAT 57.117 33.333 0.00 0.00 0.00 2.17
77 78 6.691754 TTGATTGCTTTGACTGTGTAGAAA 57.308 33.333 0.00 0.00 0.00 2.52
78 79 6.691754 TTTGATTGCTTTGACTGTGTAGAA 57.308 33.333 0.00 0.00 0.00 2.10
79 80 6.882610 ATTTGATTGCTTTGACTGTGTAGA 57.117 33.333 0.00 0.00 0.00 2.59
80 81 9.121517 CTTAATTTGATTGCTTTGACTGTGTAG 57.878 33.333 0.00 0.00 0.00 2.74
81 82 8.081633 CCTTAATTTGATTGCTTTGACTGTGTA 58.918 33.333 0.00 0.00 0.00 2.90
82 83 6.925165 CCTTAATTTGATTGCTTTGACTGTGT 59.075 34.615 0.00 0.00 0.00 3.72
83 84 6.128742 GCCTTAATTTGATTGCTTTGACTGTG 60.129 38.462 0.00 0.00 0.00 3.66
84 85 5.928264 GCCTTAATTTGATTGCTTTGACTGT 59.072 36.000 0.00 0.00 0.00 3.55
85 86 5.927689 TGCCTTAATTTGATTGCTTTGACTG 59.072 36.000 0.00 0.00 0.00 3.51
86 87 6.100404 TGCCTTAATTTGATTGCTTTGACT 57.900 33.333 0.00 0.00 0.00 3.41
87 88 6.973229 ATGCCTTAATTTGATTGCTTTGAC 57.027 33.333 0.00 0.00 0.00 3.18
88 89 7.545265 GTGTATGCCTTAATTTGATTGCTTTGA 59.455 33.333 0.00 0.00 0.00 2.69
89 90 7.546667 AGTGTATGCCTTAATTTGATTGCTTTG 59.453 33.333 0.00 0.00 0.00 2.77
90 91 7.614494 AGTGTATGCCTTAATTTGATTGCTTT 58.386 30.769 0.00 0.00 0.00 3.51
91 92 7.174107 AGTGTATGCCTTAATTTGATTGCTT 57.826 32.000 0.00 0.00 0.00 3.91
92 93 6.183360 GGAGTGTATGCCTTAATTTGATTGCT 60.183 38.462 0.00 0.00 0.00 3.91
93 94 5.979517 GGAGTGTATGCCTTAATTTGATTGC 59.020 40.000 0.00 0.00 0.00 3.56
94 95 6.096705 TGGGAGTGTATGCCTTAATTTGATTG 59.903 38.462 0.00 0.00 40.89 2.67
95 96 6.096846 GTGGGAGTGTATGCCTTAATTTGATT 59.903 38.462 0.00 0.00 40.89 2.57
96 97 5.594317 GTGGGAGTGTATGCCTTAATTTGAT 59.406 40.000 0.00 0.00 40.89 2.57
97 98 4.947388 GTGGGAGTGTATGCCTTAATTTGA 59.053 41.667 0.00 0.00 40.89 2.69
98 99 4.097892 GGTGGGAGTGTATGCCTTAATTTG 59.902 45.833 0.00 0.00 40.89 2.32
99 100 4.278310 GGTGGGAGTGTATGCCTTAATTT 58.722 43.478 0.00 0.00 40.89 1.82
100 101 3.372675 GGGTGGGAGTGTATGCCTTAATT 60.373 47.826 0.00 0.00 40.89 1.40
101 102 2.174854 GGGTGGGAGTGTATGCCTTAAT 59.825 50.000 0.00 0.00 40.89 1.40
102 103 1.562475 GGGTGGGAGTGTATGCCTTAA 59.438 52.381 0.00 0.00 40.89 1.85
103 104 1.209621 GGGTGGGAGTGTATGCCTTA 58.790 55.000 0.00 0.00 40.89 2.69
104 105 0.550147 AGGGTGGGAGTGTATGCCTT 60.550 55.000 0.00 0.00 40.89 4.35
105 106 0.550147 AAGGGTGGGAGTGTATGCCT 60.550 55.000 0.00 0.00 40.89 4.75
106 107 1.209621 TAAGGGTGGGAGTGTATGCC 58.790 55.000 0.00 0.00 40.61 4.40
107 108 2.438021 TGATAAGGGTGGGAGTGTATGC 59.562 50.000 0.00 0.00 0.00 3.14
108 109 3.495100 GCTGATAAGGGTGGGAGTGTATG 60.495 52.174 0.00 0.00 0.00 2.39
109 110 2.706190 GCTGATAAGGGTGGGAGTGTAT 59.294 50.000 0.00 0.00 0.00 2.29
127 128 4.679654 GTCCAAAATAGGTTCAAAACGCTG 59.320 41.667 0.00 0.00 0.00 5.18
136 137 7.169158 TCCATTTGATGTCCAAAATAGGTTC 57.831 36.000 0.00 0.00 46.64 3.62
152 155 7.898636 ACCCCACTATTAATTTCTTCCATTTGA 59.101 33.333 0.00 0.00 0.00 2.69
205 212 2.295885 CTTCAGCTGGATCCATGTTCC 58.704 52.381 16.63 1.76 0.00 3.62
221 228 9.520515 AGTTCAGGAGAAAAATAATTAGCTTCA 57.479 29.630 0.00 0.00 35.08 3.02
222 229 9.780413 CAGTTCAGGAGAAAAATAATTAGCTTC 57.220 33.333 0.00 0.00 35.08 3.86
223 230 9.520515 TCAGTTCAGGAGAAAAATAATTAGCTT 57.479 29.630 0.00 0.00 35.08 3.74
224 231 9.171877 CTCAGTTCAGGAGAAAAATAATTAGCT 57.828 33.333 0.00 0.00 35.08 3.32
226 233 9.171877 AGCTCAGTTCAGGAGAAAAATAATTAG 57.828 33.333 0.00 0.00 35.08 1.73
228 235 9.171877 CTAGCTCAGTTCAGGAGAAAAATAATT 57.828 33.333 0.00 0.00 35.08 1.40
229 236 7.772757 CCTAGCTCAGTTCAGGAGAAAAATAAT 59.227 37.037 0.00 0.00 35.08 1.28
230 237 7.038302 TCCTAGCTCAGTTCAGGAGAAAAATAA 60.038 37.037 0.00 0.00 35.08 1.40
231 238 6.440647 TCCTAGCTCAGTTCAGGAGAAAAATA 59.559 38.462 0.00 0.00 35.08 1.40
238 248 2.159114 GCTTCCTAGCTCAGTTCAGGAG 60.159 54.545 0.00 0.00 44.27 3.69
323 333 6.645003 TGTAGCTTACTTGTTGTAGTCATGTG 59.355 38.462 0.00 0.00 32.08 3.21
347 360 1.000827 CCTCTACATGGCGAGCTACTG 60.001 57.143 0.00 0.00 0.00 2.74
354 367 0.469331 CCCCTACCTCTACATGGCGA 60.469 60.000 0.00 0.00 0.00 5.54
356 369 1.755384 GCCCCTACCTCTACATGGC 59.245 63.158 0.00 0.00 0.00 4.40
360 373 2.281091 CCGGCCCCTACCTCTACA 59.719 66.667 0.00 0.00 0.00 2.74
382 395 9.379811 GTGTACTACGTGCTAATAACTATTCTC 57.620 37.037 0.00 0.00 0.00 2.87
389 402 4.501921 GCCAGTGTACTACGTGCTAATAAC 59.498 45.833 0.00 0.00 0.00 1.89
391 404 3.695556 TGCCAGTGTACTACGTGCTAATA 59.304 43.478 0.00 0.00 33.57 0.98
392 405 2.494471 TGCCAGTGTACTACGTGCTAAT 59.506 45.455 0.00 0.00 33.57 1.73
400 413 4.997905 CATATGCATGCCAGTGTACTAC 57.002 45.455 16.68 0.00 0.00 2.73
447 460 3.741075 GCTGTAGTGGTGCATATGCTGTA 60.741 47.826 27.13 11.15 42.66 2.74
448 461 2.910199 CTGTAGTGGTGCATATGCTGT 58.090 47.619 27.13 10.42 42.66 4.40
449 462 1.600957 GCTGTAGTGGTGCATATGCTG 59.399 52.381 27.13 8.13 42.66 4.41
450 463 1.210234 TGCTGTAGTGGTGCATATGCT 59.790 47.619 27.13 10.24 42.66 3.79
451 464 1.331756 GTGCTGTAGTGGTGCATATGC 59.668 52.381 21.09 21.09 39.00 3.14
514 532 2.169832 ATCATAGATGGTTTCCCGCG 57.830 50.000 0.00 0.00 0.00 6.46
644 662 5.449113 CGATCGATCAATGTGTTTTTAGCAC 59.551 40.000 24.40 0.00 37.37 4.40
659 677 1.275953 GACGACGAGCGATCGATCA 59.724 57.895 31.66 0.00 44.57 2.92
989 1011 3.493350 CGACCCTTCCATCTAATCACCAG 60.493 52.174 0.00 0.00 0.00 4.00
1233 1261 3.119316 AGGAGCATTTCTGACTGAGTACG 60.119 47.826 0.00 0.00 0.00 3.67
1234 1262 4.081972 TCAGGAGCATTTCTGACTGAGTAC 60.082 45.833 0.00 0.00 35.37 2.73
1251 1279 0.665670 CACTGACGTGTGCTCAGGAG 60.666 60.000 14.77 5.71 39.69 3.69
1260 1296 2.280119 ACGCATGCACTGACGTGT 60.280 55.556 19.57 1.22 43.16 4.49
1308 1344 1.145803 GAAACACCCGTCGAAGGAAG 58.854 55.000 19.75 12.63 0.00 3.46
1350 1390 2.710377 TGCATGCTTGGTACTTGGTAG 58.290 47.619 20.33 0.00 0.00 3.18
1351 1391 2.869101 TGCATGCTTGGTACTTGGTA 57.131 45.000 20.33 0.00 0.00 3.25
1352 1392 2.220653 ATGCATGCTTGGTACTTGGT 57.779 45.000 20.33 0.00 0.00 3.67
1354 1394 3.379372 AGCTTATGCATGCTTGGTACTTG 59.621 43.478 20.33 0.94 42.74 3.16
1356 1396 2.947652 CAGCTTATGCATGCTTGGTACT 59.052 45.455 20.33 6.57 42.74 2.73
1357 1397 2.684881 ACAGCTTATGCATGCTTGGTAC 59.315 45.455 20.33 4.21 42.74 3.34
1358 1398 2.684374 CACAGCTTATGCATGCTTGGTA 59.316 45.455 20.33 0.00 42.74 3.25
1359 1399 1.475280 CACAGCTTATGCATGCTTGGT 59.525 47.619 20.33 8.76 42.74 3.67
1360 1400 1.801395 GCACAGCTTATGCATGCTTGG 60.801 52.381 20.33 10.98 44.77 3.61
1361 1401 1.556564 GCACAGCTTATGCATGCTTG 58.443 50.000 20.33 11.83 44.77 4.01
1454 1494 2.621526 AGGAAAAACGCTAGGTGGTTTG 59.378 45.455 0.00 0.00 33.04 2.93
1487 1527 0.622136 TGCATGAAGTCCTCCTGCAT 59.378 50.000 0.00 0.00 46.80 3.96
1590 1630 9.699703 GCAAAACATGAAGGTTTTAAATACCTA 57.300 29.630 17.14 7.87 46.23 3.08
1591 1631 8.428852 AGCAAAACATGAAGGTTTTAAATACCT 58.571 29.630 13.23 13.23 46.23 3.08
1592 1632 8.601845 AGCAAAACATGAAGGTTTTAAATACC 57.398 30.769 0.00 10.03 46.23 2.73
1593 1633 9.476202 AGAGCAAAACATGAAGGTTTTAAATAC 57.524 29.630 0.00 0.00 46.23 1.89
1617 1661 7.334844 ACACATATAATCTTGAGACGACAGA 57.665 36.000 0.00 0.00 0.00 3.41
1678 1723 2.171003 CAGAAGTTGGGGGATTTGTCC 58.829 52.381 0.00 0.00 0.00 4.02
1805 1850 8.528044 TTTGTAAAACTTCCTACAAATCCACT 57.472 30.769 3.85 0.00 41.03 4.00
1934 1980 8.200792 AGCTAACCAAACAAATTGTATCAAACA 58.799 29.630 0.00 0.00 37.32 2.83
2107 2154 7.893658 TCTAATTATACAACTGCTAGTAGGGC 58.106 38.462 12.78 0.00 0.00 5.19
2165 2216 7.181665 AGGTGTATGCATACATGGAGAGAATAT 59.818 37.037 35.33 12.60 44.25 1.28
2204 2255 7.865889 GCTGTAATAACAACTAAAAAGGCACTT 59.134 33.333 0.00 0.00 43.40 3.16
2215 2266 9.884636 ACATACATGAAGCTGTAATAACAACTA 57.115 29.630 0.00 0.00 35.37 2.24
2405 2467 0.903454 TCTCCTTGTCCTTCCCCGTC 60.903 60.000 0.00 0.00 0.00 4.79
2414 2476 2.224305 CCCGGTGAATATCTCCTTGTCC 60.224 54.545 0.00 0.00 0.00 4.02
2558 2620 2.962859 ACCTTGTTTGATTTGGAGGCT 58.037 42.857 0.00 0.00 0.00 4.58
2594 2657 7.880713 GGGGCCAACATTCTAAAAGAAAATTTA 59.119 33.333 4.39 0.00 37.82 1.40
2597 2660 5.547666 AGGGGCCAACATTCTAAAAGAAAAT 59.452 36.000 4.39 0.00 37.82 1.82
2605 2668 4.161377 GCAAATTAGGGGCCAACATTCTAA 59.839 41.667 4.39 2.77 0.00 2.10
2606 2669 3.704061 GCAAATTAGGGGCCAACATTCTA 59.296 43.478 4.39 0.00 0.00 2.10
2612 2675 1.153647 GCGCAAATTAGGGGCCAAC 60.154 57.895 4.39 0.00 38.16 3.77
2615 2678 0.668535 CTTAGCGCAAATTAGGGGCC 59.331 55.000 11.47 0.00 44.40 5.80
2616 2679 0.030773 GCTTAGCGCAAATTAGGGGC 59.969 55.000 11.47 10.06 43.74 5.80
2637 2705 4.881850 AGTTAGGTGGTATTAGCATGCAAC 59.118 41.667 21.98 11.82 0.00 4.17
2680 2749 8.593679 TCATCCTAGAAACATTGAGTTCAAGTA 58.406 33.333 0.74 0.00 40.26 2.24
2713 2790 3.717899 GCGAAGATGCGGCATACA 58.282 55.556 16.66 0.00 0.00 2.29
2743 2820 0.518636 TCGACGGGTACTTCTTCACG 59.481 55.000 0.00 0.00 0.00 4.35
3047 3124 4.856801 GTGATGGGGCGACGGCAT 62.857 66.667 23.66 8.91 42.47 4.40
3052 3129 3.718210 GAGGACGTGATGGGGCGAC 62.718 68.421 0.00 0.00 0.00 5.19
3053 3130 3.458163 GAGGACGTGATGGGGCGA 61.458 66.667 0.00 0.00 0.00 5.54
3054 3131 4.530857 GGAGGACGTGATGGGGCG 62.531 72.222 0.00 0.00 0.00 6.13
3055 3132 3.399181 TGGAGGACGTGATGGGGC 61.399 66.667 0.00 0.00 0.00 5.80
3056 3133 2.584608 GTGGAGGACGTGATGGGG 59.415 66.667 0.00 0.00 0.00 4.96
3057 3134 2.290287 TGGTGGAGGACGTGATGGG 61.290 63.158 0.00 0.00 0.00 4.00
3058 3135 1.079127 GTGGTGGAGGACGTGATGG 60.079 63.158 0.00 0.00 0.00 3.51
3059 3136 1.446099 CGTGGTGGAGGACGTGATG 60.446 63.158 0.00 0.00 0.00 3.07
3060 3137 2.970639 CGTGGTGGAGGACGTGAT 59.029 61.111 0.00 0.00 0.00 3.06
3061 3138 3.986006 GCGTGGTGGAGGACGTGA 61.986 66.667 0.00 0.00 37.89 4.35
3235 3321 0.462047 GGTTCTGGTACCTCATGCCG 60.462 60.000 14.36 0.00 35.35 5.69
3316 3402 0.729478 CAGGCGTCTCACGTACACAG 60.729 60.000 0.00 0.00 44.73 3.66
3364 3455 1.743252 CTCAAACCGCCCTGCTCTC 60.743 63.158 0.00 0.00 0.00 3.20
3365 3456 2.348998 CTCAAACCGCCCTGCTCT 59.651 61.111 0.00 0.00 0.00 4.09
3416 3507 7.148656 GCTCAAAGAATAACTGACAGAGAAGAC 60.149 40.741 10.08 0.00 0.00 3.01
3428 3523 7.530426 AACCTGAAATGCTCAAAGAATAACT 57.470 32.000 0.00 0.00 32.17 2.24
3432 3527 5.713861 AGCTAACCTGAAATGCTCAAAGAAT 59.286 36.000 0.00 0.00 32.17 2.40
3499 3598 0.574922 TGAATGTATACAAGCGCGCG 59.425 50.000 28.44 28.44 0.00 6.86
3546 3645 6.819649 AGGCGCATAACAAGTACAAGTAATAA 59.180 34.615 10.83 0.00 0.00 1.40
3548 3647 5.183228 AGGCGCATAACAAGTACAAGTAAT 58.817 37.500 10.83 0.00 0.00 1.89
3549 3648 4.571919 AGGCGCATAACAAGTACAAGTAA 58.428 39.130 10.83 0.00 0.00 2.24
3552 3651 3.062639 CAGAGGCGCATAACAAGTACAAG 59.937 47.826 10.83 0.00 0.00 3.16
3553 3652 3.000041 CAGAGGCGCATAACAAGTACAA 59.000 45.455 10.83 0.00 0.00 2.41
3570 3670 3.617669 CACGTTTAACTTTGGCACAGAG 58.382 45.455 7.81 0.00 46.85 3.35
3660 3760 1.623811 GAGGGCTCTGTCACAAGGTTA 59.376 52.381 0.00 0.00 0.00 2.85
3666 3766 2.805313 ATCGGGAGGGCTCTGTCACA 62.805 60.000 0.00 0.00 0.00 3.58
3717 3817 2.741145 ACCGAGAAGAGAGGCTACATT 58.259 47.619 0.00 0.00 0.00 2.71
3718 3818 2.445682 ACCGAGAAGAGAGGCTACAT 57.554 50.000 0.00 0.00 0.00 2.29
3721 3821 1.685491 GGGAACCGAGAAGAGAGGCTA 60.685 57.143 0.00 0.00 40.86 3.93
3736 3836 1.612739 AGACCGGGAAGGAGGGAAC 60.613 63.158 6.32 0.00 45.00 3.62
3738 3838 1.886730 ATCAGACCGGGAAGGAGGGA 61.887 60.000 6.32 0.00 45.00 4.20
3745 3845 3.527507 AGCTCTATATCAGACCGGGAA 57.472 47.619 6.32 0.00 0.00 3.97
3751 3851 4.987912 GTGGCTCAAAGCTCTATATCAGAC 59.012 45.833 0.00 0.00 41.99 3.51
3754 3854 3.243873 CGGTGGCTCAAAGCTCTATATCA 60.244 47.826 0.00 0.00 41.99 2.15
3758 3858 0.462759 GCGGTGGCTCAAAGCTCTAT 60.463 55.000 0.00 0.00 41.99 1.98
3842 3961 2.040544 CCATCTCCACCGCAACCAC 61.041 63.158 0.00 0.00 0.00 4.16
3843 3962 2.350895 CCATCTCCACCGCAACCA 59.649 61.111 0.00 0.00 0.00 3.67
3855 3987 2.034879 CCTCAACGTTGCGCCATCT 61.035 57.895 23.47 0.00 0.00 2.90
3885 4058 1.826024 GCCTGGGTGAGTCATCGAT 59.174 57.895 0.00 0.00 0.00 3.59
3887 4060 2.202797 CGCCTGGGTGAGTCATCG 60.203 66.667 0.00 0.00 0.00 3.84
3934 4125 2.604855 CCCATATGCGACGTCTACTGTC 60.605 54.545 14.70 0.00 0.00 3.51
3937 4128 0.314302 GCCCATATGCGACGTCTACT 59.686 55.000 14.70 0.00 0.00 2.57
3939 4130 0.966179 ATGCCCATATGCGACGTCTA 59.034 50.000 14.70 2.69 0.00 2.59
3941 4132 0.880278 ACATGCCCATATGCGACGTC 60.880 55.000 5.18 5.18 0.00 4.34
3944 4135 0.311790 CCAACATGCCCATATGCGAC 59.688 55.000 0.00 0.00 0.00 5.19
3947 4138 1.274167 CCATCCAACATGCCCATATGC 59.726 52.381 0.00 0.00 0.00 3.14
3949 4140 1.636148 GCCATCCAACATGCCCATAT 58.364 50.000 0.00 0.00 0.00 1.78
3952 4143 2.755064 CGCCATCCAACATGCCCA 60.755 61.111 0.00 0.00 0.00 5.36
3967 4158 1.144936 CCAGATCAACCTCCTCCGC 59.855 63.158 0.00 0.00 0.00 5.54
3971 4162 1.280457 GACCACCAGATCAACCTCCT 58.720 55.000 0.00 0.00 0.00 3.69
3983 4174 1.160870 ATCCCTGTCTGGACCACCA 59.839 57.895 0.00 0.00 44.76 4.17
4003 4194 0.665835 TTCGTTGGCAAATTCACGCT 59.334 45.000 0.00 0.00 0.00 5.07
4026 4217 2.687935 GTTCTGTCCAAGGCTGAACAAA 59.312 45.455 18.65 0.50 41.38 2.83
4028 4219 1.476833 GGTTCTGTCCAAGGCTGAACA 60.477 52.381 21.85 6.19 42.60 3.18
4038 4229 1.745890 CTGGTGACGGTTCTGTCCA 59.254 57.895 8.96 1.62 38.11 4.02
4066 4257 3.615536 AACGAGGTAACGACGCCCG 62.616 63.158 0.00 0.00 42.87 6.13
4085 4276 3.134127 GACGCCCACAATGCCTCC 61.134 66.667 0.00 0.00 0.00 4.30
4086 4277 2.359850 TGACGCCCACAATGCCTC 60.360 61.111 0.00 0.00 0.00 4.70
4090 4281 0.314935 AAAAGCTGACGCCCACAATG 59.685 50.000 0.00 0.00 36.60 2.82
4091 4282 0.598065 GAAAAGCTGACGCCCACAAT 59.402 50.000 0.00 0.00 36.60 2.71
4094 4285 1.856265 CTGGAAAAGCTGACGCCCAC 61.856 60.000 0.00 0.00 36.60 4.61
4099 4290 4.154737 TCATTTGATCTGGAAAAGCTGACG 59.845 41.667 0.00 0.00 0.00 4.35
4100 4291 5.633830 TCATTTGATCTGGAAAAGCTGAC 57.366 39.130 0.00 0.00 0.00 3.51
4101 4292 5.126545 CCATCATTTGATCTGGAAAAGCTGA 59.873 40.000 0.00 0.00 31.21 4.26
4102 4293 5.348986 CCATCATTTGATCTGGAAAAGCTG 58.651 41.667 0.00 0.00 31.21 4.24
4103 4294 4.142004 GCCATCATTTGATCTGGAAAAGCT 60.142 41.667 4.70 0.00 31.21 3.74
4104 4295 4.117685 GCCATCATTTGATCTGGAAAAGC 58.882 43.478 4.70 0.00 31.21 3.51
4106 4297 4.015764 TCGCCATCATTTGATCTGGAAAA 58.984 39.130 4.70 0.00 31.21 2.29
4107 4298 3.619419 TCGCCATCATTTGATCTGGAAA 58.381 40.909 4.70 0.00 31.21 3.13
4108 4299 3.118298 TCTCGCCATCATTTGATCTGGAA 60.118 43.478 4.70 0.00 31.21 3.53
4110 4301 2.842457 TCTCGCCATCATTTGATCTGG 58.158 47.619 0.00 0.00 31.21 3.86
4112 4303 4.711399 TGAATCTCGCCATCATTTGATCT 58.289 39.130 0.00 0.00 31.21 2.75
4113 4304 5.391449 CATGAATCTCGCCATCATTTGATC 58.609 41.667 0.00 0.00 31.65 2.92
4114 4305 4.321008 GCATGAATCTCGCCATCATTTGAT 60.321 41.667 0.00 0.00 31.65 2.57
4116 4307 3.243267 TGCATGAATCTCGCCATCATTTG 60.243 43.478 0.00 0.00 31.65 2.32
4117 4308 2.953648 TGCATGAATCTCGCCATCATTT 59.046 40.909 0.00 0.00 31.65 2.32
4118 4309 2.578786 TGCATGAATCTCGCCATCATT 58.421 42.857 0.00 0.00 31.65 2.57
4119 4310 2.265589 TGCATGAATCTCGCCATCAT 57.734 45.000 0.00 0.00 34.22 2.45
4121 4312 1.128136 CGATGCATGAATCTCGCCATC 59.872 52.381 12.02 4.18 0.00 3.51
4122 4313 1.154197 CGATGCATGAATCTCGCCAT 58.846 50.000 12.02 0.00 0.00 4.40
4123 4314 0.179076 ACGATGCATGAATCTCGCCA 60.179 50.000 12.02 0.00 34.60 5.69
4126 4317 1.524355 GGTGACGATGCATGAATCTCG 59.476 52.381 12.02 3.23 37.17 4.04
4127 4318 1.869767 GGGTGACGATGCATGAATCTC 59.130 52.381 12.02 8.72 0.00 2.75
4129 4320 0.947244 GGGGTGACGATGCATGAATC 59.053 55.000 2.46 3.23 0.00 2.52
4130 4321 0.255604 TGGGGTGACGATGCATGAAT 59.744 50.000 2.46 0.00 0.00 2.57
4131 4322 0.255604 ATGGGGTGACGATGCATGAA 59.744 50.000 2.46 0.00 0.00 2.57
4132 4323 0.464193 CATGGGGTGACGATGCATGA 60.464 55.000 2.46 0.00 0.00 3.07
4133 4324 1.449726 CCATGGGGTGACGATGCATG 61.450 60.000 2.46 0.00 34.33 4.06
4134 4325 1.152902 CCATGGGGTGACGATGCAT 60.153 57.895 2.85 0.00 34.33 3.96
4136 4327 2.516930 CCCATGGGGTGACGATGC 60.517 66.667 24.53 0.00 38.25 3.91
4180 4380 2.039084 AGCCAAACACTTGTCCCTCTAG 59.961 50.000 0.00 0.00 0.00 2.43
4181 4381 2.054799 AGCCAAACACTTGTCCCTCTA 58.945 47.619 0.00 0.00 0.00 2.43
4182 4382 0.846693 AGCCAAACACTTGTCCCTCT 59.153 50.000 0.00 0.00 0.00 3.69
4207 4407 1.412453 TACGGAAACCTGTGCCCTGT 61.412 55.000 0.00 0.00 0.00 4.00
4208 4408 0.035439 ATACGGAAACCTGTGCCCTG 60.035 55.000 0.00 0.00 0.00 4.45
4209 4409 1.208776 GTATACGGAAACCTGTGCCCT 59.791 52.381 0.00 0.00 0.00 5.19
4214 4414 3.836562 ACCAGAAGTATACGGAAACCTGT 59.163 43.478 0.00 0.00 0.00 4.00
4218 4418 2.601763 CGCACCAGAAGTATACGGAAAC 59.398 50.000 0.00 0.00 0.00 2.78
4220 4420 1.135527 CCGCACCAGAAGTATACGGAA 59.864 52.381 0.00 0.00 39.67 4.30
4228 4428 2.426023 GGTCACCGCACCAGAAGT 59.574 61.111 0.00 0.00 36.32 3.01
4229 4429 2.425592 TGGTCACCGCACCAGAAG 59.574 61.111 0.00 0.00 41.84 2.85
4233 4433 3.484806 ACCTTGGTCACCGCACCA 61.485 61.111 0.00 0.00 45.25 4.17
4234 4434 2.978010 CACCTTGGTCACCGCACC 60.978 66.667 0.00 0.00 36.90 5.01
4235 4435 2.978010 CCACCTTGGTCACCGCAC 60.978 66.667 0.00 0.00 31.35 5.34
4236 4436 3.164977 TCCACCTTGGTCACCGCA 61.165 61.111 0.00 0.00 39.03 5.69
4237 4437 2.358737 CTCCACCTTGGTCACCGC 60.359 66.667 0.00 0.00 39.03 5.68
4238 4438 2.358737 GCTCCACCTTGGTCACCG 60.359 66.667 0.00 0.00 39.03 4.94
4239 4439 2.358737 CGCTCCACCTTGGTCACC 60.359 66.667 0.00 0.00 39.03 4.02
4240 4440 2.358737 CCGCTCCACCTTGGTCAC 60.359 66.667 0.00 0.00 39.03 3.67
4241 4441 4.329545 GCCGCTCCACCTTGGTCA 62.330 66.667 0.00 0.00 39.03 4.02
4242 4442 3.628646 ATGCCGCTCCACCTTGGTC 62.629 63.158 0.00 0.00 39.03 4.02
4243 4443 3.650950 ATGCCGCTCCACCTTGGT 61.651 61.111 0.00 0.00 39.03 3.67
4244 4444 3.136123 CATGCCGCTCCACCTTGG 61.136 66.667 0.00 0.00 39.43 3.61
4245 4445 3.818787 GCATGCCGCTCCACCTTG 61.819 66.667 6.36 0.00 37.77 3.61
4249 4449 2.665008 TAGATGGCATGCCGCTCCAC 62.665 60.000 30.87 17.12 41.91 4.02
4250 4450 1.981951 TTAGATGGCATGCCGCTCCA 61.982 55.000 30.87 16.61 41.91 3.86
4251 4451 1.227943 TTAGATGGCATGCCGCTCC 60.228 57.895 30.87 18.80 41.91 4.70
4252 4452 0.815213 TGTTAGATGGCATGCCGCTC 60.815 55.000 30.87 27.31 41.91 5.03
4253 4453 0.179009 ATGTTAGATGGCATGCCGCT 60.179 50.000 30.87 29.32 41.91 5.52
4254 4454 1.522668 TATGTTAGATGGCATGCCGC 58.477 50.000 30.87 24.42 39.42 6.53
4255 4455 3.337358 TGATATGTTAGATGGCATGCCG 58.663 45.455 30.87 0.00 39.42 5.69
4256 4456 4.378770 CGTTGATATGTTAGATGGCATGCC 60.379 45.833 30.54 30.54 0.00 4.40
4257 4457 4.452114 TCGTTGATATGTTAGATGGCATGC 59.548 41.667 9.90 9.90 0.00 4.06
4258 4458 5.388786 CGTCGTTGATATGTTAGATGGCATG 60.389 44.000 3.81 0.00 0.00 4.06
4259 4459 4.686091 CGTCGTTGATATGTTAGATGGCAT 59.314 41.667 0.00 0.00 0.00 4.40
4260 4460 4.048504 CGTCGTTGATATGTTAGATGGCA 58.951 43.478 0.00 0.00 0.00 4.92
4261 4461 4.148348 GTCGTCGTTGATATGTTAGATGGC 59.852 45.833 0.00 0.00 0.00 4.40
4262 4462 4.378910 CGTCGTCGTTGATATGTTAGATGG 59.621 45.833 0.00 0.00 0.00 3.51
4263 4463 5.202640 TCGTCGTCGTTGATATGTTAGATG 58.797 41.667 1.33 0.00 38.33 2.90
4264 4464 5.007430 ACTCGTCGTCGTTGATATGTTAGAT 59.993 40.000 1.33 0.00 38.33 1.98
4265 4465 4.330894 ACTCGTCGTCGTTGATATGTTAGA 59.669 41.667 1.33 0.00 38.33 2.10
4266 4466 4.585364 ACTCGTCGTCGTTGATATGTTAG 58.415 43.478 1.33 0.00 38.33 2.34
4267 4467 4.581493 GACTCGTCGTCGTTGATATGTTA 58.419 43.478 1.33 0.00 38.33 2.41
4268 4468 3.423571 GACTCGTCGTCGTTGATATGTT 58.576 45.455 1.33 0.00 38.33 2.71
4269 4469 3.048942 GACTCGTCGTCGTTGATATGT 57.951 47.619 1.33 0.00 38.33 2.29
4279 4479 0.928922 TGCTATCGAGACTCGTCGTC 59.071 55.000 23.41 12.41 41.35 4.20
4280 4480 1.366679 TTGCTATCGAGACTCGTCGT 58.633 50.000 23.41 13.53 41.35 4.34
4281 4481 2.367772 CTTTGCTATCGAGACTCGTCG 58.632 52.381 23.41 13.89 41.35 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.