Multiple sequence alignment - TraesCS5B01G274600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G274600 chr5B 100.000 3359 0 0 1 3359 460494223 460490865 0.000000e+00 6204.0
1 TraesCS5B01G274600 chr5B 81.495 535 93 4 1 534 460943714 460944243 5.150000e-118 435.0
2 TraesCS5B01G274600 chr5B 82.051 507 82 7 5 509 443291209 443291708 1.110000e-114 424.0
3 TraesCS5B01G274600 chr5B 94.737 95 4 1 3229 3323 460491063 460490970 2.700000e-31 147.0
4 TraesCS5B01G274600 chr5B 74.874 199 42 6 1697 1891 84657302 84657108 2.150000e-12 84.2
5 TraesCS5B01G274600 chr5A 90.480 2857 164 47 1 2794 484438059 484435248 0.000000e+00 3670.0
6 TraesCS5B01G274600 chr5A 83.919 541 72 12 1 534 509125420 509124888 1.390000e-138 503.0
7 TraesCS5B01G274600 chr5A 82.960 446 72 3 90 534 484843714 484844156 1.880000e-107 399.0
8 TraesCS5B01G274600 chr5A 86.842 152 19 1 3080 3231 44408406 44408256 5.760000e-38 169.0
9 TraesCS5B01G274600 chr5A 84.177 158 22 3 3083 3239 325183434 325183279 2.090000e-32 150.0
10 TraesCS5B01G274600 chr5A 85.294 102 15 0 1694 1795 18857776 18857877 4.580000e-19 106.0
11 TraesCS5B01G274600 chr5A 75.377 199 41 6 1697 1891 71453624 71453430 4.620000e-14 89.8
12 TraesCS5B01G274600 chr5D 91.256 2493 153 36 1 2456 384018497 384016033 0.000000e+00 3336.0
13 TraesCS5B01G274600 chr5D 82.430 535 88 4 1 534 384154921 384155450 2.360000e-126 462.0
14 TraesCS5B01G274600 chr5D 82.249 507 81 7 5 509 373216593 373217092 2.390000e-116 429.0
15 TraesCS5B01G274600 chr5D 83.664 453 58 14 1 447 404882054 404882496 2.410000e-111 412.0
16 TraesCS5B01G274600 chr5D 73.371 353 67 23 1697 2038 75997826 75997490 4.580000e-19 106.0
17 TraesCS5B01G274600 chr3A 90.302 464 29 8 2799 3248 95131679 95132140 8.020000e-166 593.0
18 TraesCS5B01G274600 chr3A 90.299 134 9 2 3229 3359 95132053 95132185 4.460000e-39 172.0
19 TraesCS5B01G274600 chr3A 75.000 288 58 13 1637 1916 656135245 656135526 1.640000e-23 121.0
20 TraesCS5B01G274600 chr3A 87.255 102 13 0 1694 1795 121479961 121480062 2.120000e-22 117.0
21 TraesCS5B01G274600 chr7B 96.154 260 10 0 3100 3359 130069305 130069564 3.100000e-115 425.0
22 TraesCS5B01G274600 chr7B 85.503 338 37 7 2786 3114 130068952 130069286 3.210000e-90 342.0
23 TraesCS5B01G274600 chr1D 88.202 356 14 4 3008 3359 479334086 479334417 1.880000e-107 399.0
24 TraesCS5B01G274600 chr1D 89.933 149 12 1 2826 2971 479333943 479334091 4.420000e-44 189.0
25 TraesCS5B01G274600 chr1D 85.714 133 15 4 3229 3359 479334242 479334372 1.630000e-28 137.0
26 TraesCS5B01G274600 chr1D 91.011 89 7 1 3161 3248 479334287 479334375 5.890000e-23 119.0
27 TraesCS5B01G274600 chr3D 86.420 324 40 4 2474 2796 586757849 586758169 5.330000e-93 351.0
28 TraesCS5B01G274600 chr3D 85.449 323 42 5 2475 2796 586748162 586747844 6.950000e-87 331.0
29 TraesCS5B01G274600 chr3D 74.729 277 59 10 1637 1906 520824649 520824921 2.740000e-21 113.0
30 TraesCS5B01G274600 chr6D 84.568 324 47 3 2474 2796 6963734 6963413 5.410000e-83 318.0
31 TraesCS5B01G274600 chr6A 77.516 636 72 32 2782 3359 574656632 574656010 1.950000e-82 316.0
32 TraesCS5B01G274600 chr6A 93.370 181 9 2 3077 3254 212380385 212380565 7.150000e-67 265.0
33 TraesCS5B01G274600 chr6A 89.394 132 10 3 3229 3359 212380471 212380599 2.680000e-36 163.0
34 TraesCS5B01G274600 chr3B 84.000 325 48 4 2474 2797 730718204 730718525 3.250000e-80 309.0
35 TraesCS5B01G274600 chr2B 83.129 326 51 4 2473 2797 519127699 519127377 9.110000e-76 294.0
36 TraesCS5B01G274600 chr2B 83.505 291 40 8 2510 2797 796951461 796951746 7.150000e-67 265.0
37 TraesCS5B01G274600 chr4B 82.569 327 50 7 2473 2797 604295219 604294898 7.100000e-72 281.0
38 TraesCS5B01G274600 chr4B 76.142 197 41 4 1697 1890 72902080 72901887 7.670000e-17 99.0
39 TraesCS5B01G274600 chr2D 83.883 273 41 3 2525 2796 172972508 172972238 1.200000e-64 257.0
40 TraesCS5B01G274600 chr6B 85.638 188 26 1 2599 2785 378281740 378281927 2.640000e-46 196.0
41 TraesCS5B01G274600 chr6B 78.030 132 23 3 1766 1891 204124439 204124308 9.990000e-11 78.7
42 TraesCS5B01G274600 chr4A 76.098 205 43 4 1697 1898 547979761 547979560 5.930000e-18 102.0
43 TraesCS5B01G274600 chr4D 75.122 205 45 4 1697 1898 49369393 49369192 1.280000e-14 91.6
44 TraesCS5B01G274600 chr7D 84.091 88 14 0 3077 3164 159074377 159074464 5.970000e-13 86.1
45 TraesCS5B01G274600 chr1B 81.818 99 11 7 3052 3145 160502260 160502356 3.590000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G274600 chr5B 460490865 460494223 3358 True 3175.5 6204 97.3685 1 3359 2 chr5B.!!$R2 3358
1 TraesCS5B01G274600 chr5B 460943714 460944243 529 False 435.0 435 81.4950 1 534 1 chr5B.!!$F2 533
2 TraesCS5B01G274600 chr5A 484435248 484438059 2811 True 3670.0 3670 90.4800 1 2794 1 chr5A.!!$R4 2793
3 TraesCS5B01G274600 chr5A 509124888 509125420 532 True 503.0 503 83.9190 1 534 1 chr5A.!!$R5 533
4 TraesCS5B01G274600 chr5D 384016033 384018497 2464 True 3336.0 3336 91.2560 1 2456 1 chr5D.!!$R2 2455
5 TraesCS5B01G274600 chr5D 384154921 384155450 529 False 462.0 462 82.4300 1 534 1 chr5D.!!$F2 533
6 TraesCS5B01G274600 chr3A 95131679 95132185 506 False 382.5 593 90.3005 2799 3359 2 chr3A.!!$F3 560
7 TraesCS5B01G274600 chr7B 130068952 130069564 612 False 383.5 425 90.8285 2786 3359 2 chr7B.!!$F1 573
8 TraesCS5B01G274600 chr6A 574656010 574656632 622 True 316.0 316 77.5160 2782 3359 1 chr6A.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 532 0.032130 TGACCTCGAGCAGTTGTGAC 59.968 55.0 6.99 0.00 0.00 3.67 F
536 543 0.171455 AGTTGTGACGATCTCGAGCC 59.829 55.0 7.81 0.76 43.02 4.70 F
606 613 0.179097 GAGGACCCAAGATCAGCGTC 60.179 60.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 2173 0.384669 GATCCAGTACTTCCCCGACG 59.615 60.000 0.0 0.0 0.0 5.12 R
2157 2177 3.711704 TCTTGATGATCCAGTACTTCCCC 59.288 47.826 0.0 0.0 0.0 4.81 R
2585 2653 0.037975 GGAACATGCTTTGCCCTGTG 60.038 55.000 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 6.420903 TCTTCTTGAATGTAAGTCACTGTTCG 59.579 38.462 0.00 0.00 42.58 3.95
254 261 5.013495 AGTGAAGATCATTGGTTTCTCCTCA 59.987 40.000 0.00 0.00 37.07 3.86
517 524 0.745486 CAATGCCATGACCTCGAGCA 60.745 55.000 6.99 0.50 37.94 4.26
519 526 1.620739 ATGCCATGACCTCGAGCAGT 61.621 55.000 6.99 0.00 36.80 4.40
523 530 1.073964 CATGACCTCGAGCAGTTGTG 58.926 55.000 6.99 0.56 0.00 3.33
525 532 0.032130 TGACCTCGAGCAGTTGTGAC 59.968 55.000 6.99 0.00 0.00 3.67
534 541 1.135546 AGCAGTTGTGACGATCTCGAG 60.136 52.381 5.93 5.93 43.02 4.04
536 543 0.171455 AGTTGTGACGATCTCGAGCC 59.829 55.000 7.81 0.76 43.02 4.70
537 544 1.134530 GTTGTGACGATCTCGAGCCG 61.135 60.000 20.24 20.24 43.02 5.52
538 545 1.303091 TTGTGACGATCTCGAGCCGA 61.303 55.000 25.95 4.81 43.02 5.54
539 546 1.095807 TGTGACGATCTCGAGCCGAT 61.096 55.000 25.95 9.34 43.02 4.18
541 548 1.095807 TGACGATCTCGAGCCGATGT 61.096 55.000 25.95 12.86 43.02 3.06
543 550 0.456221 ACGATCTCGAGCCGATGTTT 59.544 50.000 25.95 7.42 43.02 2.83
544 551 0.848942 CGATCTCGAGCCGATGTTTG 59.151 55.000 18.07 0.00 43.02 2.93
545 552 1.799181 CGATCTCGAGCCGATGTTTGT 60.799 52.381 18.07 0.00 43.02 2.83
546 553 2.271800 GATCTCGAGCCGATGTTTGTT 58.728 47.619 7.81 0.00 34.61 2.83
547 554 2.163818 TCTCGAGCCGATGTTTGTTT 57.836 45.000 7.81 0.00 34.61 2.83
548 555 2.066262 TCTCGAGCCGATGTTTGTTTC 58.934 47.619 7.81 0.00 34.61 2.78
549 556 2.069273 CTCGAGCCGATGTTTGTTTCT 58.931 47.619 0.00 0.00 34.61 2.52
551 558 1.725931 CGAGCCGATGTTTGTTTCTGC 60.726 52.381 0.00 0.00 0.00 4.26
552 559 0.238289 AGCCGATGTTTGTTTCTGCG 59.762 50.000 0.00 0.00 0.00 5.18
553 560 1.337110 GCCGATGTTTGTTTCTGCGC 61.337 55.000 0.00 0.00 0.00 6.09
554 561 1.059657 CCGATGTTTGTTTCTGCGCG 61.060 55.000 0.00 0.00 0.00 6.86
557 564 2.230864 GATGTTTGTTTCTGCGCGTAC 58.769 47.619 8.43 0.00 0.00 3.67
560 567 0.230260 TTTGTTTCTGCGCGTACGTC 59.770 50.000 17.90 9.76 42.83 4.34
561 568 1.868217 TTGTTTCTGCGCGTACGTCG 61.868 55.000 21.93 21.93 42.83 5.12
563 570 3.541093 TTTCTGCGCGTACGTCGGT 62.541 57.895 25.35 0.00 42.83 4.69
564 571 2.181372 TTTCTGCGCGTACGTCGGTA 62.181 55.000 25.35 12.00 42.83 4.02
565 572 2.181372 TTCTGCGCGTACGTCGGTAA 62.181 55.000 25.35 10.93 42.83 2.85
566 573 2.491271 CTGCGCGTACGTCGGTAAC 61.491 63.158 25.35 13.91 42.83 2.50
567 574 3.240353 GCGCGTACGTCGGTAACC 61.240 66.667 25.35 10.82 42.83 2.85
568 575 2.576847 CGCGTACGTCGGTAACCC 60.577 66.667 17.90 0.00 40.26 4.11
569 576 2.877691 GCGTACGTCGGTAACCCT 59.122 61.111 17.90 0.00 40.26 4.34
570 577 1.212751 GCGTACGTCGGTAACCCTT 59.787 57.895 17.90 0.00 40.26 3.95
571 578 0.388520 GCGTACGTCGGTAACCCTTT 60.389 55.000 17.90 0.00 40.26 3.11
572 579 1.617740 CGTACGTCGGTAACCCTTTC 58.382 55.000 7.22 0.00 35.71 2.62
574 581 2.328473 GTACGTCGGTAACCCTTTCAC 58.672 52.381 0.00 0.00 0.00 3.18
575 582 0.318955 ACGTCGGTAACCCTTTCACG 60.319 55.000 0.00 0.00 0.00 4.35
576 583 1.010419 CGTCGGTAACCCTTTCACGG 61.010 60.000 0.00 0.00 0.00 4.94
577 584 1.004679 TCGGTAACCCTTTCACGGC 60.005 57.895 0.00 0.00 0.00 5.68
580 587 1.162698 GGTAACCCTTTCACGGCTTC 58.837 55.000 0.00 0.00 0.00 3.86
581 588 1.543871 GGTAACCCTTTCACGGCTTCA 60.544 52.381 0.00 0.00 0.00 3.02
582 589 1.804748 GTAACCCTTTCACGGCTTCAG 59.195 52.381 0.00 0.00 0.00 3.02
583 590 0.182775 AACCCTTTCACGGCTTCAGT 59.817 50.000 0.00 0.00 0.00 3.41
584 591 0.535102 ACCCTTTCACGGCTTCAGTG 60.535 55.000 0.00 0.00 40.71 3.66
586 593 1.308998 CCTTTCACGGCTTCAGTGTT 58.691 50.000 0.00 0.00 40.28 3.32
587 594 1.002468 CCTTTCACGGCTTCAGTGTTG 60.002 52.381 0.00 0.00 40.28 3.33
588 595 1.939934 CTTTCACGGCTTCAGTGTTGA 59.060 47.619 0.00 0.00 40.28 3.18
589 596 1.581934 TTCACGGCTTCAGTGTTGAG 58.418 50.000 0.00 0.00 40.28 3.02
590 597 0.249868 TCACGGCTTCAGTGTTGAGG 60.250 55.000 0.00 0.00 40.28 3.86
591 598 0.249868 CACGGCTTCAGTGTTGAGGA 60.250 55.000 0.00 0.00 32.46 3.71
592 599 0.249911 ACGGCTTCAGTGTTGAGGAC 60.250 55.000 0.00 0.00 35.18 3.85
593 600 0.951040 CGGCTTCAGTGTTGAGGACC 60.951 60.000 0.00 0.00 35.07 4.46
594 601 0.606673 GGCTTCAGTGTTGAGGACCC 60.607 60.000 0.00 0.00 32.45 4.46
599 606 2.338809 TCAGTGTTGAGGACCCAAGAT 58.661 47.619 0.00 0.00 0.00 2.40
603 610 1.003580 TGTTGAGGACCCAAGATCAGC 59.996 52.381 0.00 0.00 0.00 4.26
606 613 0.179097 GAGGACCCAAGATCAGCGTC 60.179 60.000 0.00 0.00 0.00 5.19
614 621 3.193157 CAAGATCAGCGTCTTGTTTGG 57.807 47.619 16.49 0.00 46.30 3.28
625 632 3.997021 CGTCTTGTTTGGAAGAGCTGTAT 59.003 43.478 0.00 0.00 32.53 2.29
698 705 3.181450 GCATTCTAGCCTACATTCCCTGT 60.181 47.826 0.00 0.00 42.13 4.00
714 721 3.330701 TCCCTGTTTGTTAGCCTTCTGAT 59.669 43.478 0.00 0.00 0.00 2.90
717 724 5.888161 CCCTGTTTGTTAGCCTTCTGATATT 59.112 40.000 0.00 0.00 0.00 1.28
723 730 6.266131 TGTTAGCCTTCTGATATTTGGGAT 57.734 37.500 0.00 0.00 0.00 3.85
730 737 6.373774 GCCTTCTGATATTTGGGATAGTGATG 59.626 42.308 0.00 0.00 0.00 3.07
754 761 1.142667 TGTTGAGGTGCACATTCTGGA 59.857 47.619 20.43 3.92 0.00 3.86
759 766 1.001641 GTGCACATTCTGGAGGGCT 60.002 57.895 13.17 0.00 0.00 5.19
761 768 0.609957 TGCACATTCTGGAGGGCTTG 60.610 55.000 0.00 0.00 0.00 4.01
768 775 0.907486 TCTGGAGGGCTTGTCATGAG 59.093 55.000 0.00 0.00 0.00 2.90
829 842 3.732212 TCACTGACTGAAGATGTTGTGG 58.268 45.455 0.00 0.00 0.00 4.17
842 855 5.542779 AGATGTTGTGGTACTCTTTCTGAC 58.457 41.667 0.00 0.00 0.00 3.51
848 861 4.021104 TGTGGTACTCTTTCTGACATCCTG 60.021 45.833 0.00 0.00 0.00 3.86
856 869 6.155221 ACTCTTTCTGACATCCTGCTGTAATA 59.845 38.462 0.00 0.00 0.00 0.98
858 871 6.818644 TCTTTCTGACATCCTGCTGTAATAAC 59.181 38.462 0.00 0.00 0.00 1.89
859 872 5.939764 TCTGACATCCTGCTGTAATAACT 57.060 39.130 0.00 0.00 0.00 2.24
860 873 7.418337 TTCTGACATCCTGCTGTAATAACTA 57.582 36.000 0.00 0.00 0.00 2.24
861 874 6.806751 TCTGACATCCTGCTGTAATAACTAC 58.193 40.000 0.00 0.00 0.00 2.73
862 875 6.379988 TCTGACATCCTGCTGTAATAACTACA 59.620 38.462 0.00 0.00 38.23 2.74
863 876 6.338146 TGACATCCTGCTGTAATAACTACAC 58.662 40.000 0.00 0.00 35.50 2.90
864 877 5.671493 ACATCCTGCTGTAATAACTACACC 58.329 41.667 0.00 0.00 35.50 4.16
865 878 5.188948 ACATCCTGCTGTAATAACTACACCA 59.811 40.000 0.00 0.00 35.50 4.17
879 892 2.507407 ACACCAAACCTTGTGACTGT 57.493 45.000 0.00 0.00 0.00 3.55
882 895 1.283613 ACCAAACCTTGTGACTGTCCA 59.716 47.619 5.17 0.14 0.00 4.02
891 908 1.202568 TGTGACTGTCCAGTTGCTCTG 60.203 52.381 5.17 3.18 42.66 3.35
893 910 1.069204 TGACTGTCCAGTTGCTCTGTC 59.931 52.381 5.17 0.00 42.66 3.51
940 957 0.607489 GCTTGCACATCAGACCACCT 60.607 55.000 0.00 0.00 0.00 4.00
980 997 9.149323 ATCGAATGATAAACGGACTAAATGCCG 62.149 40.741 0.00 0.00 42.46 5.69
1033 1050 1.328680 CATAACGACCTGCTCATGCAC 59.671 52.381 0.00 0.00 45.31 4.57
1036 1053 2.393768 CGACCTGCTCATGCACACC 61.394 63.158 0.00 0.00 45.31 4.16
1040 1057 1.603842 CTGCTCATGCACACCCCTA 59.396 57.895 0.00 0.00 45.31 3.53
1046 1066 0.327924 CATGCACACCCCTACCTCAA 59.672 55.000 0.00 0.00 0.00 3.02
1054 1074 3.107601 CACCCCTACCTCAATTCTCTCA 58.892 50.000 0.00 0.00 0.00 3.27
1063 1083 3.338249 CTCAATTCTCTCAAAGGCCGAA 58.662 45.455 0.00 0.00 0.00 4.30
1064 1084 3.750371 TCAATTCTCTCAAAGGCCGAAA 58.250 40.909 0.00 0.00 0.00 3.46
1065 1085 4.141287 TCAATTCTCTCAAAGGCCGAAAA 58.859 39.130 0.00 0.00 0.00 2.29
1066 1086 4.023193 TCAATTCTCTCAAAGGCCGAAAAC 60.023 41.667 0.00 0.00 0.00 2.43
1115 1135 1.599606 TTCTCCTGCTGCTCGTCTCC 61.600 60.000 0.00 0.00 0.00 3.71
1412 1432 0.955919 CAGAGAACTTTGCCCCCGTC 60.956 60.000 0.00 0.00 0.00 4.79
1421 1441 3.399181 GCCCCCGTCAGTGGATGA 61.399 66.667 0.00 0.00 34.79 2.92
1498 1518 7.822161 TTCTTGGATCATCTTTGAAAGTTGA 57.178 32.000 17.91 17.91 40.42 3.18
1614 1634 3.067106 TGAAAAAGAGGCTGACGATGAC 58.933 45.455 0.00 0.00 0.00 3.06
1651 1671 1.268283 GGAGGTGGACTGGAGGAAGG 61.268 65.000 0.00 0.00 0.00 3.46
1938 1958 0.951040 CCAAGCTCAACGAGACCACC 60.951 60.000 0.00 0.00 0.00 4.61
2219 2239 4.227134 CGAGGCCGGCTACATGCT 62.227 66.667 28.56 14.02 42.39 3.79
2220 2240 2.280457 GAGGCCGGCTACATGCTC 60.280 66.667 28.56 19.00 42.39 4.26
2293 2313 1.751351 CGAGCTACCCTCTCATGTGAA 59.249 52.381 0.00 0.00 38.49 3.18
2328 2385 5.046529 GGCTGATGATGTGTGTAAGTAGAG 58.953 45.833 0.00 0.00 0.00 2.43
2446 2514 1.285023 GCAAGGTTGAGCAGCACAG 59.715 57.895 0.00 0.00 0.00 3.66
2450 2518 1.072159 GGTTGAGCAGCACAGACCT 59.928 57.895 13.27 0.00 0.00 3.85
2456 2524 0.403271 AGCAGCACAGACCTTCCATT 59.597 50.000 0.00 0.00 0.00 3.16
2457 2525 1.202976 AGCAGCACAGACCTTCCATTT 60.203 47.619 0.00 0.00 0.00 2.32
2458 2526 1.615392 GCAGCACAGACCTTCCATTTT 59.385 47.619 0.00 0.00 0.00 1.82
2459 2527 2.036346 GCAGCACAGACCTTCCATTTTT 59.964 45.455 0.00 0.00 0.00 1.94
2460 2528 3.255642 GCAGCACAGACCTTCCATTTTTA 59.744 43.478 0.00 0.00 0.00 1.52
2461 2529 4.082026 GCAGCACAGACCTTCCATTTTTAT 60.082 41.667 0.00 0.00 0.00 1.40
2462 2530 5.567423 GCAGCACAGACCTTCCATTTTTATT 60.567 40.000 0.00 0.00 0.00 1.40
2463 2531 6.458210 CAGCACAGACCTTCCATTTTTATTT 58.542 36.000 0.00 0.00 0.00 1.40
2464 2532 6.930722 CAGCACAGACCTTCCATTTTTATTTT 59.069 34.615 0.00 0.00 0.00 1.82
2465 2533 7.442062 CAGCACAGACCTTCCATTTTTATTTTT 59.558 33.333 0.00 0.00 0.00 1.94
2501 2569 0.749818 TGAACAAGGAAAGGCGCACA 60.750 50.000 10.83 0.00 0.00 4.57
2505 2573 1.150536 AAGGAAAGGCGCACAAGGA 59.849 52.632 10.83 0.00 0.00 3.36
2506 2574 0.890996 AAGGAAAGGCGCACAAGGAG 60.891 55.000 10.83 0.00 0.00 3.69
2512 2580 0.613260 AGGCGCACAAGGAGTCAATA 59.387 50.000 10.83 0.00 0.00 1.90
2528 2596 6.071840 GGAGTCAATATATTCAGCTCGGTAGT 60.072 42.308 0.00 0.00 0.00 2.73
2539 2607 3.566322 CAGCTCGGTAGTAGAATACAGCT 59.434 47.826 0.00 0.00 43.87 4.24
2540 2608 4.036971 CAGCTCGGTAGTAGAATACAGCTT 59.963 45.833 0.73 0.00 41.39 3.74
2579 2647 4.163649 TGTCGAGACAAGGTAGAGAGGATA 59.836 45.833 3.11 0.00 38.56 2.59
2583 2651 5.468746 CGAGACAAGGTAGAGAGGATAGAAG 59.531 48.000 0.00 0.00 0.00 2.85
2585 2653 6.362248 AGACAAGGTAGAGAGGATAGAAGTC 58.638 44.000 0.00 0.00 0.00 3.01
2589 2657 5.690865 AGGTAGAGAGGATAGAAGTCACAG 58.309 45.833 0.00 0.00 0.00 3.66
2594 2662 2.501723 GAGGATAGAAGTCACAGGGCAA 59.498 50.000 0.00 0.00 0.00 4.52
2600 2668 0.963962 AAGTCACAGGGCAAAGCATG 59.036 50.000 0.00 0.00 0.00 4.06
2641 2710 6.546428 AAGCAGCTAAAGATAGGTTCAGTA 57.454 37.500 0.00 0.00 37.77 2.74
2657 2726 4.959596 TCAGTAGCACTACTAAGAACCG 57.040 45.455 9.92 0.00 43.98 4.44
2665 2734 2.100989 CTACTAAGAACCGGGTGAGCT 58.899 52.381 6.32 0.00 0.00 4.09
2666 2735 1.349067 ACTAAGAACCGGGTGAGCTT 58.651 50.000 6.32 7.87 0.00 3.74
2692 2761 6.455360 TTGTGAGCAATTCCATTAATCTCC 57.545 37.500 0.00 0.00 0.00 3.71
2694 2763 5.136105 GTGAGCAATTCCATTAATCTCCCT 58.864 41.667 0.00 0.00 0.00 4.20
2695 2764 6.126507 TGTGAGCAATTCCATTAATCTCCCTA 60.127 38.462 0.00 0.00 0.00 3.53
2701 2771 9.520515 GCAATTCCATTAATCTCCCTAGAAATA 57.479 33.333 0.00 0.00 34.73 1.40
2713 2783 8.798975 TCTCCCTAGAAATATGAAACACCTAT 57.201 34.615 0.00 0.00 0.00 2.57
2738 2808 3.651803 GGAGATCATCCGTAGTCTTGG 57.348 52.381 0.00 0.00 38.67 3.61
2739 2809 3.223435 GGAGATCATCCGTAGTCTTGGA 58.777 50.000 0.00 0.00 38.67 3.53
2741 2811 3.226777 AGATCATCCGTAGTCTTGGAGG 58.773 50.000 0.00 0.35 37.76 4.30
2744 2814 3.643237 TCATCCGTAGTCTTGGAGGAAT 58.357 45.455 5.88 0.00 41.67 3.01
2745 2815 3.637229 TCATCCGTAGTCTTGGAGGAATC 59.363 47.826 5.88 0.00 41.67 2.52
2753 2823 3.271250 TTGGAGGAATCTGCAAGCC 57.729 52.632 0.00 0.00 44.54 4.35
2770 2840 1.113517 GCCATGCTCTGATTGCCCAT 61.114 55.000 0.00 0.00 0.00 4.00
2846 2916 2.737359 GCATCCACCATTCACATGCTTG 60.737 50.000 0.00 0.00 37.47 4.01
2849 2919 3.433343 TCCACCATTCACATGCTTGATT 58.567 40.909 6.60 0.00 0.00 2.57
2850 2920 3.833650 TCCACCATTCACATGCTTGATTT 59.166 39.130 6.60 0.00 0.00 2.17
2851 2921 3.930229 CCACCATTCACATGCTTGATTTG 59.070 43.478 6.60 0.00 0.00 2.32
2853 2923 4.387559 CACCATTCACATGCTTGATTTGTG 59.612 41.667 6.60 0.00 41.60 3.33
2854 2924 3.369756 CCATTCACATGCTTGATTTGTGC 59.630 43.478 6.60 0.00 40.38 4.57
2855 2925 3.729862 TTCACATGCTTGATTTGTGCA 57.270 38.095 6.60 0.00 40.38 4.57
2856 2926 3.729862 TCACATGCTTGATTTGTGCAA 57.270 38.095 6.60 0.00 40.38 4.08
2857 2927 4.260139 TCACATGCTTGATTTGTGCAAT 57.740 36.364 6.60 0.00 40.38 3.56
2859 2929 5.404096 TCACATGCTTGATTTGTGCAATAG 58.596 37.500 6.60 0.00 40.38 1.73
2860 2930 5.047872 TCACATGCTTGATTTGTGCAATAGT 60.048 36.000 6.60 0.00 40.38 2.12
2861 2931 5.061684 CACATGCTTGATTTGTGCAATAGTG 59.938 40.000 6.60 0.00 40.24 2.74
2926 3004 5.886474 TCTCTCGTATTCTCTGCTAAAAGGA 59.114 40.000 0.00 0.00 0.00 3.36
2947 3025 0.466124 CTAGTAGGCCCCACAGAAGC 59.534 60.000 0.00 0.00 0.00 3.86
2955 3033 2.177531 CCACAGAAGCGCATGCAC 59.822 61.111 19.57 8.32 46.23 4.57
2956 3034 2.202260 CACAGAAGCGCATGCACG 60.202 61.111 19.57 3.00 46.23 5.34
2990 3070 0.393808 GCTGACTCTCTCCTCTCCGT 60.394 60.000 0.00 0.00 0.00 4.69
2991 3071 1.378531 CTGACTCTCTCCTCTCCGTG 58.621 60.000 0.00 0.00 0.00 4.94
3126 3274 6.353429 CCAAGACCTTTAGAATGAGATCCCTT 60.353 42.308 0.00 0.00 0.00 3.95
3279 3448 7.777910 TCTGAAAGGAGTGAAATAGGTTTTTCA 59.222 33.333 0.00 0.00 41.92 2.69
3293 3462 9.883142 AATAGGTTTTTCAAATTGAGTGAAACA 57.117 25.926 21.48 10.91 42.98 2.83
3332 3501 8.236586 TGAGTGAAATCTGTTTTGCATACATAC 58.763 33.333 3.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 5.627499 TTAATGTGACATCTTTGCAGGAC 57.373 39.130 0.00 0.00 0.00 3.85
352 359 2.027745 CCAGTACTGTTGGATGAGCAGT 60.028 50.000 21.18 0.00 44.49 4.40
499 506 0.463295 CTGCTCGAGGTCATGGCATT 60.463 55.000 15.58 0.00 32.39 3.56
517 524 0.171455 GGCTCGAGATCGTCACAACT 59.829 55.000 18.75 0.00 40.80 3.16
519 526 1.136774 CGGCTCGAGATCGTCACAA 59.863 57.895 18.75 0.00 40.80 3.33
523 530 0.029567 AACATCGGCTCGAGATCGTC 59.970 55.000 18.75 0.00 39.91 4.20
525 532 0.848942 CAAACATCGGCTCGAGATCG 59.151 55.000 18.75 18.52 39.91 3.69
534 541 1.337110 GCGCAGAAACAAACATCGGC 61.337 55.000 0.30 0.00 34.09 5.54
536 543 0.384230 ACGCGCAGAAACAAACATCG 60.384 50.000 5.73 0.00 0.00 3.84
537 544 2.230864 GTACGCGCAGAAACAAACATC 58.769 47.619 5.73 0.00 0.00 3.06
538 545 1.397945 CGTACGCGCAGAAACAAACAT 60.398 47.619 5.73 0.00 0.00 2.71
539 546 0.042880 CGTACGCGCAGAAACAAACA 60.043 50.000 5.73 0.00 0.00 2.83
541 548 0.230260 GACGTACGCGCAGAAACAAA 59.770 50.000 16.72 0.00 42.83 2.83
543 550 2.359040 CGACGTACGCGCAGAAACA 61.359 57.895 16.72 0.00 42.83 2.83
544 551 2.385361 CGACGTACGCGCAGAAAC 59.615 61.111 16.72 0.00 42.83 2.78
545 552 2.181372 TACCGACGTACGCGCAGAAA 62.181 55.000 16.72 1.47 42.83 2.52
546 553 2.181372 TTACCGACGTACGCGCAGAA 62.181 55.000 16.72 10.38 42.83 3.02
547 554 2.676029 TTACCGACGTACGCGCAGA 61.676 57.895 16.72 5.16 42.83 4.26
548 555 2.202336 TTACCGACGTACGCGCAG 60.202 61.111 16.72 10.36 42.83 5.18
549 556 2.501650 GTTACCGACGTACGCGCA 60.502 61.111 16.72 7.70 42.83 6.09
551 558 2.527547 AAGGGTTACCGACGTACGCG 62.528 60.000 16.72 18.84 43.47 6.01
552 559 0.388520 AAAGGGTTACCGACGTACGC 60.389 55.000 16.72 7.41 43.47 4.42
553 560 1.068610 TGAAAGGGTTACCGACGTACG 60.069 52.381 15.01 15.01 43.47 3.67
554 561 2.328473 GTGAAAGGGTTACCGACGTAC 58.672 52.381 0.00 0.00 43.47 3.67
557 564 1.010419 CCGTGAAAGGGTTACCGACG 61.010 60.000 0.00 0.00 43.47 5.12
560 567 1.004200 AGCCGTGAAAGGGTTACCG 60.004 57.895 0.00 0.00 45.59 4.02
565 572 0.535102 CACTGAAGCCGTGAAAGGGT 60.535 55.000 0.00 0.00 45.59 4.34
566 573 0.535102 ACACTGAAGCCGTGAAAGGG 60.535 55.000 0.00 0.00 46.87 3.95
567 574 1.002468 CAACACTGAAGCCGTGAAAGG 60.002 52.381 0.00 0.00 36.29 3.11
568 575 1.939934 TCAACACTGAAGCCGTGAAAG 59.060 47.619 0.00 0.00 36.29 2.62
569 576 1.939934 CTCAACACTGAAGCCGTGAAA 59.060 47.619 0.00 0.00 36.29 2.69
570 577 1.581934 CTCAACACTGAAGCCGTGAA 58.418 50.000 0.00 0.00 36.29 3.18
571 578 0.249868 CCTCAACACTGAAGCCGTGA 60.250 55.000 0.00 0.00 36.29 4.35
572 579 0.249868 TCCTCAACACTGAAGCCGTG 60.250 55.000 0.00 0.00 38.32 4.94
574 581 0.951040 GGTCCTCAACACTGAAGCCG 60.951 60.000 0.00 0.00 0.00 5.52
575 582 0.606673 GGGTCCTCAACACTGAAGCC 60.607 60.000 0.00 0.00 0.00 4.35
576 583 0.108585 TGGGTCCTCAACACTGAAGC 59.891 55.000 0.00 0.00 30.14 3.86
577 584 2.104792 TCTTGGGTCCTCAACACTGAAG 59.895 50.000 0.00 0.00 30.14 3.02
580 587 2.038952 TGATCTTGGGTCCTCAACACTG 59.961 50.000 0.00 0.00 30.14 3.66
581 588 2.304180 CTGATCTTGGGTCCTCAACACT 59.696 50.000 0.00 0.00 30.14 3.55
582 589 2.704572 CTGATCTTGGGTCCTCAACAC 58.295 52.381 0.00 0.00 0.00 3.32
583 590 1.003580 GCTGATCTTGGGTCCTCAACA 59.996 52.381 0.00 0.00 0.00 3.33
584 591 1.743996 GCTGATCTTGGGTCCTCAAC 58.256 55.000 0.00 0.00 0.00 3.18
586 593 0.904865 ACGCTGATCTTGGGTCCTCA 60.905 55.000 0.00 0.00 0.00 3.86
587 594 0.179097 GACGCTGATCTTGGGTCCTC 60.179 60.000 18.47 3.15 40.17 3.71
588 595 0.616111 AGACGCTGATCTTGGGTCCT 60.616 55.000 22.49 13.17 44.89 3.85
589 596 0.250513 AAGACGCTGATCTTGGGTCC 59.749 55.000 22.49 11.82 44.89 4.46
590 597 3.842869 AAGACGCTGATCTTGGGTC 57.157 52.632 20.29 20.29 44.37 4.46
599 606 2.483876 CTCTTCCAAACAAGACGCTGA 58.516 47.619 0.00 0.00 0.00 4.26
603 610 2.213499 ACAGCTCTTCCAAACAAGACG 58.787 47.619 0.00 0.00 0.00 4.18
635 642 4.686554 AGTCGAGCAACAAGAAACAGTATC 59.313 41.667 0.00 0.00 0.00 2.24
638 645 2.609459 CAGTCGAGCAACAAGAAACAGT 59.391 45.455 0.00 0.00 0.00 3.55
640 647 2.899976 TCAGTCGAGCAACAAGAAACA 58.100 42.857 0.00 0.00 0.00 2.83
688 695 3.525800 AGGCTAACAAACAGGGAATGT 57.474 42.857 0.00 0.00 46.97 2.71
689 696 4.082125 AGAAGGCTAACAAACAGGGAATG 58.918 43.478 0.00 0.00 0.00 2.67
698 705 6.489603 TCCCAAATATCAGAAGGCTAACAAA 58.510 36.000 0.00 0.00 0.00 2.83
714 721 7.629157 TCAACAGTTCATCACTATCCCAAATA 58.371 34.615 0.00 0.00 32.76 1.40
717 724 5.491070 CTCAACAGTTCATCACTATCCCAA 58.509 41.667 0.00 0.00 32.76 4.12
723 730 3.070878 TGCACCTCAACAGTTCATCACTA 59.929 43.478 0.00 0.00 32.76 2.74
730 737 2.880890 AGAATGTGCACCTCAACAGTTC 59.119 45.455 15.69 5.92 0.00 3.01
754 761 1.004044 CCTGAACTCATGACAAGCCCT 59.996 52.381 0.00 0.00 0.00 5.19
788 795 4.796830 GTGAACTGCATGCATTGAGTAATG 59.203 41.667 22.97 8.59 45.17 1.90
824 837 4.593206 AGGATGTCAGAAAGAGTACCACAA 59.407 41.667 0.00 0.00 0.00 3.33
829 842 4.180057 CAGCAGGATGTCAGAAAGAGTAC 58.820 47.826 0.00 0.00 39.31 2.73
856 869 3.945285 CAGTCACAAGGTTTGGTGTAGTT 59.055 43.478 0.00 0.00 36.43 2.24
858 871 3.541632 ACAGTCACAAGGTTTGGTGTAG 58.458 45.455 0.00 0.00 36.43 2.74
859 872 3.537580 GACAGTCACAAGGTTTGGTGTA 58.462 45.455 0.00 0.00 36.43 2.90
860 873 2.365582 GACAGTCACAAGGTTTGGTGT 58.634 47.619 0.00 0.00 36.43 4.16
861 874 1.676006 GGACAGTCACAAGGTTTGGTG 59.324 52.381 2.17 0.00 36.36 4.17
862 875 1.283613 TGGACAGTCACAAGGTTTGGT 59.716 47.619 2.17 0.00 34.12 3.67
863 876 1.949525 CTGGACAGTCACAAGGTTTGG 59.050 52.381 2.17 0.00 34.12 3.28
864 877 2.643551 ACTGGACAGTCACAAGGTTTG 58.356 47.619 2.17 0.00 36.92 2.93
865 878 3.016736 CAACTGGACAGTCACAAGGTTT 58.983 45.455 5.30 0.00 41.58 3.27
891 908 2.289820 CTGCATGTGATATGTGCTGGAC 59.710 50.000 0.00 0.00 39.52 4.02
893 910 2.294979 ACTGCATGTGATATGTGCTGG 58.705 47.619 8.04 0.27 40.65 4.85
930 947 2.054021 TGTGATTTGGAGGTGGTCTGA 58.946 47.619 0.00 0.00 0.00 3.27
940 957 4.322567 TCATTCGATGTGTGTGATTTGGA 58.677 39.130 0.00 0.00 0.00 3.53
1033 1050 3.107601 TGAGAGAATTGAGGTAGGGGTG 58.892 50.000 0.00 0.00 0.00 4.61
1036 1053 4.775236 CCTTTGAGAGAATTGAGGTAGGG 58.225 47.826 0.00 0.00 0.00 3.53
1040 1057 2.616510 CGGCCTTTGAGAGAATTGAGGT 60.617 50.000 0.00 0.00 0.00 3.85
1046 1066 3.486383 TGTTTTCGGCCTTTGAGAGAAT 58.514 40.909 0.00 0.00 0.00 2.40
1063 1083 1.538687 GGCCATTGCTGGAGCTGTTT 61.539 55.000 0.00 0.00 46.37 2.83
1064 1084 1.980772 GGCCATTGCTGGAGCTGTT 60.981 57.895 0.00 0.00 46.37 3.16
1065 1085 2.362120 GGCCATTGCTGGAGCTGT 60.362 61.111 0.00 0.00 46.37 4.40
1066 1086 2.361992 TGGCCATTGCTGGAGCTG 60.362 61.111 0.00 0.00 46.37 4.24
1412 1432 5.003692 TCGAGAGAAGAAATCATCCACTG 57.996 43.478 0.00 0.00 37.03 3.66
1531 1551 6.893958 AACATTTGTCACATAAACGCAAAA 57.106 29.167 0.00 0.00 33.60 2.44
1533 1553 6.237942 CCAAAACATTTGTCACATAAACGCAA 60.238 34.615 2.53 0.00 0.00 4.85
1543 1563 5.004922 TCCAAGACCAAAACATTTGTCAC 57.995 39.130 2.53 0.00 0.00 3.67
1614 1634 1.521450 CCTTGGGCAGAGTGCTGTTG 61.521 60.000 0.00 0.00 44.28 3.33
1620 1640 1.002868 CACCTCCTTGGGCAGAGTG 60.003 63.158 0.00 0.00 41.11 3.51
1938 1958 4.201679 TACCCGGCGATGCTCACG 62.202 66.667 9.30 0.00 0.00 4.35
2153 2173 0.384669 GATCCAGTACTTCCCCGACG 59.615 60.000 0.00 0.00 0.00 5.12
2157 2177 3.711704 TCTTGATGATCCAGTACTTCCCC 59.288 47.826 0.00 0.00 0.00 4.81
2283 2303 4.196971 CAGAATGGCAGATTCACATGAGA 58.803 43.478 0.00 0.00 0.00 3.27
2284 2304 4.553756 CAGAATGGCAGATTCACATGAG 57.446 45.455 0.00 0.00 0.00 2.90
2310 2361 7.555965 TGCATTACTCTACTTACACACATCAT 58.444 34.615 0.00 0.00 0.00 2.45
2501 2569 5.305644 ACCGAGCTGAATATATTGACTCCTT 59.694 40.000 1.78 0.00 0.00 3.36
2505 2573 6.902771 ACTACCGAGCTGAATATATTGACT 57.097 37.500 1.78 0.00 0.00 3.41
2506 2574 8.041829 TCTACTACCGAGCTGAATATATTGAC 57.958 38.462 1.78 0.00 0.00 3.18
2512 2580 7.362229 GCTGTATTCTACTACCGAGCTGAATAT 60.362 40.741 0.00 0.00 35.01 1.28
2539 2607 3.069872 TCGACAGGGCTTTGTACTACAAA 59.930 43.478 12.75 12.75 44.91 2.83
2540 2608 2.629137 TCGACAGGGCTTTGTACTACAA 59.371 45.455 0.00 0.00 36.11 2.41
2554 2622 2.680841 CTCTCTACCTTGTCTCGACAGG 59.319 54.545 11.48 11.48 42.94 4.00
2555 2623 2.680841 CCTCTCTACCTTGTCTCGACAG 59.319 54.545 0.00 0.00 42.94 3.51
2556 2624 2.305052 TCCTCTCTACCTTGTCTCGACA 59.695 50.000 0.00 0.00 39.98 4.35
2559 2627 4.963373 TCTATCCTCTCTACCTTGTCTCG 58.037 47.826 0.00 0.00 0.00 4.04
2579 2647 0.183492 TGCTTTGCCCTGTGACTTCT 59.817 50.000 0.00 0.00 0.00 2.85
2583 2651 0.675633 AACATGCTTTGCCCTGTGAC 59.324 50.000 0.00 0.00 0.00 3.67
2585 2653 0.037975 GGAACATGCTTTGCCCTGTG 60.038 55.000 0.00 0.00 0.00 3.66
2589 2657 0.968405 TGAAGGAACATGCTTTGCCC 59.032 50.000 0.00 0.00 0.00 5.36
2594 2662 2.555757 GTTCAGCTGAAGGAACATGCTT 59.444 45.455 29.13 0.00 42.23 3.91
2600 2668 2.287849 GCTTTGGTTCAGCTGAAGGAAC 60.288 50.000 29.13 17.81 42.00 3.62
2631 2700 7.388460 GTTCTTAGTAGTGCTACTGAACCTA 57.612 40.000 20.44 3.52 45.25 3.08
2641 2710 1.549170 CACCCGGTTCTTAGTAGTGCT 59.451 52.381 0.00 0.00 0.00 4.40
2657 2726 0.807496 GCTCACAATGAAGCTCACCC 59.193 55.000 5.42 0.00 0.00 4.61
2665 2734 8.070034 AGATTAATGGAATTGCTCACAATGAA 57.930 30.769 0.00 0.00 45.90 2.57
2666 2735 7.201848 GGAGATTAATGGAATTGCTCACAATGA 60.202 37.037 0.00 0.00 45.90 2.57
2695 2764 9.347240 CTCCATTCATAGGTGTTTCATATTTCT 57.653 33.333 0.00 0.00 0.00 2.52
2701 2771 6.903516 TGATCTCCATTCATAGGTGTTTCAT 58.096 36.000 0.00 0.00 0.00 2.57
2704 2774 6.302269 GGATGATCTCCATTCATAGGTGTTT 58.698 40.000 6.39 0.00 44.26 2.83
2713 2783 4.474394 AGACTACGGATGATCTCCATTCA 58.526 43.478 10.58 0.00 45.24 2.57
2728 2798 2.166459 TGCAGATTCCTCCAAGACTACG 59.834 50.000 0.00 0.00 0.00 3.51
2735 2805 0.405198 TGGCTTGCAGATTCCTCCAA 59.595 50.000 0.00 0.00 0.00 3.53
2753 2823 0.673985 CCATGGGCAATCAGAGCATG 59.326 55.000 2.85 0.00 0.00 4.06
2770 2840 3.695606 GCGGCTGACTCCACTCCA 61.696 66.667 0.00 0.00 0.00 3.86
2846 2916 1.136891 GGCCCCACTATTGCACAAATC 59.863 52.381 0.00 0.00 0.00 2.17
2849 2919 1.304879 GGGCCCCACTATTGCACAA 60.305 57.895 12.23 0.00 0.00 3.33
2850 2920 1.873178 ATGGGCCCCACTATTGCACA 61.873 55.000 22.27 0.00 43.54 4.57
2851 2921 1.076044 ATGGGCCCCACTATTGCAC 60.076 57.895 22.27 0.00 35.80 4.57
2853 2923 0.771127 TAGATGGGCCCCACTATTGC 59.229 55.000 22.27 0.00 35.80 3.56
2854 2924 4.228210 ACATATAGATGGGCCCCACTATTG 59.772 45.833 29.95 26.82 35.80 1.90
2855 2925 4.448431 ACATATAGATGGGCCCCACTATT 58.552 43.478 29.95 19.77 35.80 1.73
2856 2926 4.094216 ACATATAGATGGGCCCCACTAT 57.906 45.455 28.66 28.66 35.80 2.12
2857 2927 3.577968 ACATATAGATGGGCCCCACTA 57.422 47.619 22.27 22.01 35.80 2.74
2859 2929 5.397559 GGTTATACATATAGATGGGCCCCAC 60.398 48.000 22.27 13.64 35.80 4.61
2860 2930 4.724798 GGTTATACATATAGATGGGCCCCA 59.275 45.833 22.27 4.05 37.39 4.96
2861 2931 4.104261 GGGTTATACATATAGATGGGCCCC 59.896 50.000 22.27 4.15 37.39 5.80
2926 3004 2.188817 CTTCTGTGGGGCCTACTAGTT 58.811 52.381 21.36 0.00 0.00 2.24
2947 3025 0.098552 TTTATTCTGCCGTGCATGCG 59.901 50.000 14.09 0.00 38.13 4.73
2955 3033 5.468072 AGAGTCAGCATATTTTATTCTGCCG 59.532 40.000 0.00 0.00 35.21 5.69
2956 3034 6.709846 AGAGAGTCAGCATATTTTATTCTGCC 59.290 38.462 0.00 0.00 35.21 4.85
2990 3070 2.297315 TGTTTGTTTTGTGGCAGTGACA 59.703 40.909 0.00 0.00 0.00 3.58
2991 3071 2.953020 TGTTTGTTTTGTGGCAGTGAC 58.047 42.857 0.00 0.00 0.00 3.67
3279 3448 7.610865 TCCAGAAAACTTGTTTCACTCAATTT 58.389 30.769 0.00 0.00 0.00 1.82
3293 3462 7.286316 ACAGATTTCACTCATTCCAGAAAACTT 59.714 33.333 0.00 0.00 32.91 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.