Multiple sequence alignment - TraesCS5B01G274400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G274400 chr5B 100.000 8005 0 0 1 8005 460271362 460263358 0.000000e+00 14783.0
1 TraesCS5B01G274400 chr5B 80.620 129 17 6 7857 7978 551461651 551461524 8.550000e-15 93.5
2 TraesCS5B01G274400 chr5B 79.433 141 20 7 7800 7932 120951292 120951153 3.080000e-14 91.6
3 TraesCS5B01G274400 chr5D 95.371 7518 261 28 4 7464 383781862 383774375 0.000000e+00 11875.0
4 TraesCS5B01G274400 chr5D 91.045 201 17 1 7455 7654 361141447 361141247 3.680000e-68 270.0
5 TraesCS5B01G274400 chr5D 92.593 135 7 1 4344 4478 421652941 421653072 2.950000e-44 191.0
6 TraesCS5B01G274400 chr5D 85.294 136 19 1 5068 5202 383776646 383776511 1.080000e-28 139.0
7 TraesCS5B01G274400 chr5D 92.453 53 4 0 4597 4649 368730899 368730847 8.610000e-10 76.8
8 TraesCS5B01G274400 chr5D 91.667 48 3 1 4492 4539 421653171 421653217 1.860000e-06 65.8
9 TraesCS5B01G274400 chr5A 95.728 4307 136 19 4 4284 484084483 484080199 0.000000e+00 6890.0
10 TraesCS5B01G274400 chr5A 95.481 2257 67 17 4639 6872 484080191 484077947 0.000000e+00 3570.0
11 TraesCS5B01G274400 chr5A 90.106 566 37 3 6907 7464 484077873 484077319 0.000000e+00 717.0
12 TraesCS5B01G274400 chr5A 90.863 197 14 2 4291 4483 255445013 255445209 2.220000e-65 261.0
13 TraesCS5B01G274400 chr5A 83.406 229 27 5 7786 8003 484076635 484076407 1.360000e-47 202.0
14 TraesCS5B01G274400 chr5A 90.714 140 11 1 4340 4479 246760689 246760826 1.370000e-42 185.0
15 TraesCS5B01G274400 chr5A 90.141 142 14 0 4343 4484 554079002 554079143 1.370000e-42 185.0
16 TraesCS5B01G274400 chr5A 93.388 121 8 0 4529 4649 255446611 255446731 6.380000e-41 180.0
17 TraesCS5B01G274400 chr5A 92.562 121 9 0 4529 4649 246760737 246760617 2.970000e-39 174.0
18 TraesCS5B01G274400 chr5A 91.597 119 10 0 4529 4647 246761378 246761496 1.790000e-36 165.0
19 TraesCS5B01G274400 chr5A 89.051 137 9 4 4343 4473 255446656 255446520 1.790000e-36 165.0
20 TraesCS5B01G274400 chr3B 92.929 198 13 1 7458 7654 693932571 693932374 3.660000e-73 287.0
21 TraesCS5B01G274400 chr3B 91.919 198 15 1 7458 7654 338601164 338601361 7.910000e-70 276.0
22 TraesCS5B01G274400 chr3B 91.878 197 14 2 7459 7654 732155232 732155037 2.850000e-69 274.0
23 TraesCS5B01G274400 chr7D 91.919 198 15 1 7458 7654 28071199 28071002 7.910000e-70 276.0
24 TraesCS5B01G274400 chr7D 83.186 226 37 1 5404 5629 224055395 224055619 1.050000e-48 206.0
25 TraesCS5B01G274400 chr7D 91.736 121 10 0 4529 4649 574746909 574747029 1.380000e-37 169.0
26 TraesCS5B01G274400 chr7D 72.581 434 87 22 1142 1550 224051310 224051736 6.570000e-21 113.0
27 TraesCS5B01G274400 chr7D 93.750 48 3 0 4492 4539 574746458 574746505 1.110000e-08 73.1
28 TraesCS5B01G274400 chr7D 86.667 60 1 2 4295 4351 117471136 117471081 8.680000e-05 60.2
29 TraesCS5B01G274400 chr6B 91.878 197 15 1 7459 7654 335547871 335548067 2.850000e-69 274.0
30 TraesCS5B01G274400 chr6B 83.333 84 9 5 7815 7894 671723557 671723639 1.110000e-08 73.1
31 TraesCS5B01G274400 chr2D 91.878 197 15 1 7459 7654 632583145 632583341 2.850000e-69 274.0
32 TraesCS5B01G274400 chr2D 77.901 181 32 5 7805 7978 45690324 45690503 1.100000e-18 106.0
33 TraesCS5B01G274400 chr6D 91.457 199 16 1 7457 7654 269564365 269564563 1.020000e-68 272.0
34 TraesCS5B01G274400 chr6D 80.263 76 15 0 7904 7979 51194529 51194454 3.120000e-04 58.4
35 TraesCS5B01G274400 chr6A 91.837 196 15 1 7460 7654 511561421 511561226 1.020000e-68 272.0
36 TraesCS5B01G274400 chr6A 92.920 113 7 1 4537 4649 163855697 163855586 6.430000e-36 163.0
37 TraesCS5B01G274400 chr6A 78.916 166 25 7 7819 7977 225672594 225672432 3.950000e-18 104.0
38 TraesCS5B01G274400 chr3D 90.055 181 15 2 4306 4483 4410421 4410601 1.740000e-56 231.0
39 TraesCS5B01G274400 chr3D 80.612 98 13 2 7684 7775 328550397 328550300 4.010000e-08 71.3
40 TraesCS5B01G274400 chr7A 83.186 226 37 1 5404 5629 237519518 237519294 1.050000e-48 206.0
41 TraesCS5B01G274400 chr7A 72.581 434 87 21 1142 1550 237523801 237523375 6.570000e-21 113.0
42 TraesCS5B01G274400 chr1D 92.361 144 10 1 4340 4483 268876536 268876678 3.790000e-48 204.0
43 TraesCS5B01G274400 chr1D 78.912 147 27 4 3836 3980 11547131 11546987 6.610000e-16 97.1
44 TraesCS5B01G274400 chr2A 91.489 141 10 2 4343 4483 767527893 767527755 8.200000e-45 193.0
45 TraesCS5B01G274400 chr2A 80.000 125 18 3 7861 7979 759970749 759970626 1.430000e-12 86.1
46 TraesCS5B01G274400 chr3A 92.562 121 9 0 4529 4649 10220237 10220357 2.970000e-39 174.0
47 TraesCS5B01G274400 chr3A 97.959 49 1 0 4287 4335 333782384 333782432 1.430000e-12 86.1
48 TraesCS5B01G274400 chr3A 100.000 33 0 0 7684 7716 443195967 443195935 2.410000e-05 62.1
49 TraesCS5B01G274400 chr4A 89.744 117 12 0 4533 4649 394750742 394750626 5.000000e-32 150.0
50 TraesCS5B01G274400 chr4A 80.791 177 27 4 7808 7978 565844624 565844799 1.810000e-26 132.0
51 TraesCS5B01G274400 chr4A 79.333 150 25 3 7835 7978 722444442 722444591 5.110000e-17 100.0
52 TraesCS5B01G274400 chr7B 72.644 435 85 22 1142 1550 173860685 173861111 6.570000e-21 113.0
53 TraesCS5B01G274400 chr1B 80.142 141 26 2 3841 3980 16921222 16921083 3.950000e-18 104.0
54 TraesCS5B01G274400 chr1B 80.142 141 26 2 3841 3980 17355346 17355207 3.950000e-18 104.0
55 TraesCS5B01G274400 chr4B 79.355 155 20 10 7819 7965 382773074 382773224 1.840000e-16 99.0
56 TraesCS5B01G274400 chr1A 78.231 147 28 4 3836 3980 13672901 13672757 3.080000e-14 91.6
57 TraesCS5B01G274400 chr2B 77.372 137 23 4 7674 7803 422511794 422511929 3.100000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G274400 chr5B 460263358 460271362 8004 True 14783.00 14783 100.00000 1 8005 1 chr5B.!!$R2 8004
1 TraesCS5B01G274400 chr5D 383774375 383781862 7487 True 11875.00 11875 95.37100 4 7464 1 chr5D.!!$R3 7460
2 TraesCS5B01G274400 chr5A 484076407 484084483 8076 True 2844.75 6890 91.18025 4 8003 4 chr5A.!!$R3 7999
3 TraesCS5B01G274400 chr5A 255445013 255446731 1718 False 220.50 261 92.12550 4291 4649 2 chr5A.!!$F3 358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 222 0.169451 CGAATTTACCACCCGTTGCC 59.831 55.000 0.00 0.00 0.00 4.52 F
290 306 0.178987 TCCCTAGGATGGCGACTCTC 60.179 60.000 11.48 0.00 0.00 3.20 F
357 376 0.521735 GAAACTTCCGGGTGCATCAC 59.478 55.000 0.00 0.00 0.00 3.06 F
1108 1128 1.133823 TGCCAGCAAGTCTTTCAGGAA 60.134 47.619 0.00 0.00 0.00 3.36 F
1668 1697 0.036952 GCACTTCTAGGTCTGCTGCA 60.037 55.000 0.88 0.88 0.00 4.41 F
1972 2001 0.110295 TGTAGCAGCTGGGCTTTTCA 59.890 50.000 17.12 5.21 42.71 2.69 F
3770 3811 0.179234 TGTCTCCTTTGTTGTCCGCA 59.821 50.000 0.00 0.00 0.00 5.69 F
3883 3924 1.830279 CAGAAGCTGGAGAATGGCAA 58.170 50.000 0.00 0.00 0.00 4.52 F
5317 6721 0.738389 CCAATGCCGGGTTGTATGTC 59.262 55.000 2.18 0.00 0.00 3.06 F
6783 8216 0.037232 GCGCTGAGGAAGTACACCTT 60.037 55.000 11.87 0.00 37.93 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1068 0.396974 TCCTTGCTTGGTTGCCAGTT 60.397 50.000 0.0 0.0 33.81 3.16 R
1122 1142 1.419381 TAGCACCACTGTTCCTGTCA 58.581 50.000 0.0 0.0 0.00 3.58 R
1478 1507 2.766263 TCCTCCTTGTGCGTTGATAGAT 59.234 45.455 0.0 0.0 0.00 1.98 R
2617 2658 1.340405 GGATTTCCCTGCTGAGAAGCA 60.340 52.381 0.0 0.0 43.22 3.91 R
3599 3640 0.033208 TGCCCTTGAATCCCATGACC 60.033 55.000 0.0 0.0 0.00 4.02 R
3829 3870 0.108945 GCCATTTTGGTCAGAGCTGC 60.109 55.000 0.0 0.0 40.46 5.25 R
4733 6134 3.314357 ACTTACCGCACAAAGTTTTCTCC 59.686 43.478 0.0 0.0 32.00 3.71 R
5349 6753 4.505922 GTGAGAGCAAATATTGAGGACTCG 59.494 45.833 0.0 0.0 0.00 4.18 R
6955 8427 0.034896 AGCACCTGAAAACGTCGGAT 59.965 50.000 0.0 0.0 34.07 4.18 R
7616 9097 0.038166 TGCTTAGGGGAGGTGCTTTG 59.962 55.000 0.0 0.0 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.743958 TGGCGCTGTAGAGACTAGTTC 59.256 52.381 7.64 0.00 0.00 3.01
96 98 6.903883 TTCCTTCTTTGCGTCTGTAATATC 57.096 37.500 0.00 0.00 0.00 1.63
216 219 0.250814 TGGCGAATTTACCACCCGTT 60.251 50.000 0.00 0.00 0.00 4.44
219 222 0.169451 CGAATTTACCACCCGTTGCC 59.831 55.000 0.00 0.00 0.00 4.52
265 268 2.126071 GTGCTCTGCGGCTTCGTA 60.126 61.111 0.00 0.00 36.07 3.43
290 306 0.178987 TCCCTAGGATGGCGACTCTC 60.179 60.000 11.48 0.00 0.00 3.20
357 376 0.521735 GAAACTTCCGGGTGCATCAC 59.478 55.000 0.00 0.00 0.00 3.06
370 389 3.050619 GTGCATCACATAGGTAGCGTAC 58.949 50.000 0.00 0.00 34.08 3.67
585 604 2.029073 CTCACACCGGCGAACTGT 59.971 61.111 9.30 3.45 0.00 3.55
591 610 4.680237 CCGGCGAACTGTGAGGCA 62.680 66.667 9.30 0.00 0.00 4.75
830 849 1.735018 CAACGTGTTGAACAGTGGACA 59.265 47.619 6.91 0.00 42.93 4.02
1038 1058 1.931172 CTGCCGTTAATTGGAGGTACG 59.069 52.381 1.15 0.00 0.00 3.67
1048 1068 1.826921 GGAGGTACGGGAGATGCGA 60.827 63.158 0.00 0.00 0.00 5.10
1108 1128 1.133823 TGCCAGCAAGTCTTTCAGGAA 60.134 47.619 0.00 0.00 0.00 3.36
1122 1142 2.880443 TCAGGAAAAGAGCTGGCATTT 58.120 42.857 0.00 0.00 0.00 2.32
1449 1478 4.042560 AGGCCATTATATGATCACAGCAGT 59.957 41.667 5.01 0.00 0.00 4.40
1478 1507 4.082190 CAGGTCCTTGACTCATCGTTCTAA 60.082 45.833 0.00 0.00 32.47 2.10
1668 1697 0.036952 GCACTTCTAGGTCTGCTGCA 60.037 55.000 0.88 0.88 0.00 4.41
1714 1743 7.996385 ACCAAACTTATGATTTCTTATTCCCG 58.004 34.615 0.00 0.00 0.00 5.14
1798 1827 9.754382 GTCATTTTGCATCCATCAAGTATTAAT 57.246 29.630 0.00 0.00 0.00 1.40
1805 1834 8.747471 TGCATCCATCAAGTATTAATTTTCACA 58.253 29.630 0.00 0.00 0.00 3.58
1879 1908 4.381708 TGGTGGGGGTAAATATCCAACTA 58.618 43.478 0.00 0.00 37.82 2.24
1972 2001 0.110295 TGTAGCAGCTGGGCTTTTCA 59.890 50.000 17.12 5.21 42.71 2.69
2091 2124 7.661968 TGTAGATCCAGAATGCTTAGTATGAC 58.338 38.462 0.00 0.00 31.97 3.06
2123 2156 5.253330 TCCTGTTACCTATCTGCCAAAAAG 58.747 41.667 0.00 0.00 0.00 2.27
2141 2177 9.301153 GCCAAAAAGAACATATTTATGATTCGT 57.699 29.630 4.63 1.64 37.15 3.85
2209 2245 8.084985 TCATGTACTGTAATCATGGTTAAGGA 57.915 34.615 14.67 0.00 39.25 3.36
2249 2290 3.446310 TGAGAAACTTAGTGTGCGTGA 57.554 42.857 0.00 0.00 0.00 4.35
2270 2311 4.232221 GAGCACACTTGTTTGATGATTGG 58.768 43.478 0.00 0.00 0.00 3.16
2471 2512 3.554934 TCCCCACATGATATTGTCAAGC 58.445 45.455 0.00 0.00 40.97 4.01
2541 2582 2.838202 GACCTATTGGGAGTCCAGTGAA 59.162 50.000 12.30 0.00 45.04 3.18
2617 2658 7.000472 CCAGTTCTGTGAATAATATCATGGGT 59.000 38.462 0.00 0.00 0.00 4.51
2643 2684 2.366916 CTCAGCAGGGAAATCCGAGTAT 59.633 50.000 0.00 0.00 41.52 2.12
2840 2881 3.765511 CCAAGGCATCAATCTTCCTCAAA 59.234 43.478 0.00 0.00 0.00 2.69
2975 3016 6.620877 ATCAGAATTCACAGTTACCTGGTA 57.379 37.500 8.44 1.49 43.36 3.25
3170 3211 2.095212 GGAGCTGAATTTTCGAACCCAC 60.095 50.000 0.00 0.00 0.00 4.61
3264 3305 4.753610 CCAGCAACCATCTATGTATCACTG 59.246 45.833 0.00 0.00 0.00 3.66
3529 3570 1.019673 CTCATGGCCAACCTTCATCG 58.980 55.000 10.96 0.00 36.63 3.84
3597 3638 1.201414 CCCATCAAAAACTACGGGCAC 59.799 52.381 0.00 0.00 0.00 5.01
3599 3640 2.095263 CCATCAAAAACTACGGGCACTG 60.095 50.000 0.00 0.00 42.99 3.66
3650 3691 4.796606 GGAGAAATCAGATCCCAATCCAA 58.203 43.478 0.00 0.00 31.78 3.53
3770 3811 0.179234 TGTCTCCTTTGTTGTCCGCA 59.821 50.000 0.00 0.00 0.00 5.69
3829 3870 8.894409 TTTAATTGCTTGTATGTTCTTGATCG 57.106 30.769 0.00 0.00 0.00 3.69
3883 3924 1.830279 CAGAAGCTGGAGAATGGCAA 58.170 50.000 0.00 0.00 0.00 4.52
3993 4034 6.863126 CCAAAAGGTATGCTACTCTTTTTGTG 59.137 38.462 0.00 10.64 37.21 3.33
4012 4053 9.719279 TTTTTGTGTACGTTATTTCTGGTAAAG 57.281 29.630 0.00 0.00 0.00 1.85
4045 4086 4.144297 AGGCATGACACATTAACACTTGT 58.856 39.130 0.00 0.00 0.00 3.16
4241 4282 5.116180 TGCCGAGTATTTCAGAAGGTAATG 58.884 41.667 0.00 0.00 0.00 1.90
4245 4286 6.986817 CCGAGTATTTCAGAAGGTAATGTGAT 59.013 38.462 0.00 0.00 0.00 3.06
4392 4436 9.897744 ATATGCCATTATGTTAAATTTGAGACG 57.102 29.630 0.00 0.00 0.00 4.18
4497 4626 2.224621 GCCATGCATACTGTACTCCCAT 60.225 50.000 0.00 0.00 0.00 4.00
4560 5960 9.951866 TTACATAATGGCATATAGAGGAGGATA 57.048 33.333 0.00 0.00 0.00 2.59
4591 5991 5.862845 TGTAATGGCATTTTTCCAATGTGT 58.137 33.333 19.21 0.00 37.13 3.72
4628 6028 5.974751 GCATTTTTCCAACTCGTGAAAGTTA 59.025 36.000 0.00 0.00 37.38 2.24
4733 6134 8.739039 TGTTAGATTGTTTCTCCCATTTATGTG 58.261 33.333 0.00 0.00 35.79 3.21
4749 6150 2.842208 TGTGGAGAAAACTTTGTGCG 57.158 45.000 0.00 0.00 0.00 5.34
5050 6452 5.123661 GCTTCTCTTCCAAGAAAGATGAAGG 59.876 44.000 17.52 0.00 38.80 3.46
5080 6482 8.688747 ATAAGGTGAGAAATCATTCCTGAATC 57.311 34.615 0.00 0.00 36.12 2.52
5177 6581 1.128200 TATCAGTAGCCAATGCCGGT 58.872 50.000 1.90 0.00 38.69 5.28
5317 6721 0.738389 CCAATGCCGGGTTGTATGTC 59.262 55.000 2.18 0.00 0.00 3.06
5330 6734 5.475564 GGGTTGTATGTCCTTGTGTTGTATT 59.524 40.000 0.00 0.00 0.00 1.89
5922 7327 8.631480 ACGAACTTAGATATTTGGTCCTTTTT 57.369 30.769 0.00 0.00 0.00 1.94
6391 7814 5.420725 ACATCAACAGGCAGTATGAGTTA 57.579 39.130 0.46 0.00 39.69 2.24
6393 7816 5.877012 ACATCAACAGGCAGTATGAGTTAAG 59.123 40.000 0.46 0.00 39.69 1.85
6404 7827 6.858993 GCAGTATGAGTTAAGGAATCTAGACG 59.141 42.308 0.00 0.00 39.69 4.18
6451 7874 5.504853 AGGGAAATCAGAAATGGTTCTCTC 58.495 41.667 0.00 0.00 42.45 3.20
6476 7899 1.204704 TCTTCAGATACTGTGTGGCCG 59.795 52.381 0.00 0.00 32.61 6.13
6517 7940 6.049149 TGCTTGGCAGTAGTATCAGTAATTC 58.951 40.000 0.00 0.00 33.32 2.17
6518 7941 6.127054 TGCTTGGCAGTAGTATCAGTAATTCT 60.127 38.462 0.00 0.00 33.32 2.40
6519 7942 6.201806 GCTTGGCAGTAGTATCAGTAATTCTG 59.798 42.308 0.00 0.00 44.85 3.02
6520 7943 6.791867 TGGCAGTAGTATCAGTAATTCTGT 57.208 37.500 0.00 0.00 43.97 3.41
6521 7944 7.182817 TGGCAGTAGTATCAGTAATTCTGTT 57.817 36.000 0.00 1.30 43.97 3.16
6522 7945 7.265673 TGGCAGTAGTATCAGTAATTCTGTTC 58.734 38.462 0.00 0.00 43.97 3.18
6523 7946 6.702282 GGCAGTAGTATCAGTAATTCTGTTCC 59.298 42.308 5.26 0.00 43.97 3.62
6524 7947 6.702282 GCAGTAGTATCAGTAATTCTGTTCCC 59.298 42.308 5.26 0.00 43.97 3.97
6525 7948 7.418025 GCAGTAGTATCAGTAATTCTGTTCCCT 60.418 40.741 5.26 0.00 43.97 4.20
6526 7949 8.478877 CAGTAGTATCAGTAATTCTGTTCCCTT 58.521 37.037 5.26 0.00 43.97 3.95
6605 8038 7.621796 AGTAGTTATAGGCTACAGTTTTGCTT 58.378 34.615 14.79 0.00 40.76 3.91
6607 8040 7.845066 AGTTATAGGCTACAGTTTTGCTTAC 57.155 36.000 0.00 0.00 0.00 2.34
6617 8050 8.902735 GCTACAGTTTTGCTTACTCAATTTAAC 58.097 33.333 0.00 0.00 0.00 2.01
6783 8216 0.037232 GCGCTGAGGAAGTACACCTT 60.037 55.000 11.87 0.00 37.93 3.50
6818 8251 1.153549 AGCCGAATCGAGCAGTTCC 60.154 57.895 15.94 0.00 0.00 3.62
6828 8261 2.741092 GCAGTTCCCTGGTGACGA 59.259 61.111 0.00 0.00 39.22 4.20
6829 8262 1.668151 GCAGTTCCCTGGTGACGAC 60.668 63.158 0.00 0.00 39.22 4.34
6830 8263 1.372997 CAGTTCCCTGGTGACGACG 60.373 63.158 0.00 0.00 34.90 5.12
6952 8424 6.212955 TCTAACTGCATTTAACTTGTTTGCC 58.787 36.000 0.00 0.00 32.39 4.52
6955 8427 2.131183 GCATTTAACTTGTTTGCCGCA 58.869 42.857 0.00 0.00 0.00 5.69
6962 8434 2.832818 CTTGTTTGCCGCATCCGACG 62.833 60.000 0.00 0.00 36.29 5.12
7005 8477 1.678425 GCTCCCAGAAGAAAGCCTGAG 60.678 57.143 0.00 0.00 32.37 3.35
7047 8519 2.676471 GGAAAGTGTGCCGGCCAT 60.676 61.111 26.77 6.59 0.00 4.40
7049 8521 3.039202 GAAAGTGTGCCGGCCATCG 62.039 63.158 26.77 0.00 38.88 3.84
7302 8775 0.314935 ATTTGCTGACCCTGCGTTTG 59.685 50.000 0.00 0.00 0.00 2.93
7324 8797 1.353804 GCGTTTGCTCGGTGTTTCA 59.646 52.632 0.00 0.00 38.39 2.69
7325 8798 0.657368 GCGTTTGCTCGGTGTTTCAG 60.657 55.000 0.00 0.00 38.39 3.02
7356 8829 2.736995 GCGCTGTCGGTTGCTGTA 60.737 61.111 0.00 0.00 35.95 2.74
7359 8832 1.004918 GCTGTCGGTTGCTGTAGGT 60.005 57.895 0.00 0.00 0.00 3.08
7384 8857 3.300388 ACCTTCGCTGATCCTATTCTCA 58.700 45.455 0.00 0.00 0.00 3.27
7389 8862 2.735663 CGCTGATCCTATTCTCATGTGC 59.264 50.000 0.00 0.00 0.00 4.57
7390 8863 3.554544 CGCTGATCCTATTCTCATGTGCT 60.555 47.826 0.00 0.00 0.00 4.40
7453 8934 0.464013 TGGCGTTTGAAAGGACGGAA 60.464 50.000 1.30 0.00 39.52 4.30
7465 8946 3.807368 ACGGAAGTGCTAAGGCCT 58.193 55.556 0.00 0.00 46.97 5.19
7466 8947 2.067197 ACGGAAGTGCTAAGGCCTT 58.933 52.632 24.18 24.18 46.97 4.35
7467 8948 0.321653 ACGGAAGTGCTAAGGCCTTG 60.322 55.000 28.77 18.05 46.97 3.61
7468 8949 0.321653 CGGAAGTGCTAAGGCCTTGT 60.322 55.000 28.77 4.97 37.74 3.16
7469 8950 1.066430 CGGAAGTGCTAAGGCCTTGTA 60.066 52.381 28.77 14.23 37.74 2.41
7470 8951 2.357075 GGAAGTGCTAAGGCCTTGTAC 58.643 52.381 28.77 23.68 37.74 2.90
7471 8952 2.290071 GGAAGTGCTAAGGCCTTGTACA 60.290 50.000 28.77 19.14 37.74 2.90
7472 8953 3.408634 GAAGTGCTAAGGCCTTGTACAA 58.591 45.455 28.77 8.28 37.74 2.41
7473 8954 3.721087 AGTGCTAAGGCCTTGTACAAT 57.279 42.857 28.77 18.25 37.74 2.71
7474 8955 3.347216 AGTGCTAAGGCCTTGTACAATG 58.653 45.455 28.77 7.68 37.74 2.82
7475 8956 2.423538 GTGCTAAGGCCTTGTACAATGG 59.576 50.000 28.77 13.26 37.74 3.16
7476 8957 2.307392 TGCTAAGGCCTTGTACAATGGA 59.693 45.455 28.77 3.22 37.74 3.41
7477 8958 3.245087 TGCTAAGGCCTTGTACAATGGAA 60.245 43.478 28.77 2.40 37.74 3.53
7478 8959 3.378427 GCTAAGGCCTTGTACAATGGAAG 59.622 47.826 28.77 13.81 0.00 3.46
7479 8960 2.514458 AGGCCTTGTACAATGGAAGG 57.486 50.000 21.28 14.79 39.51 3.46
7480 8961 1.710809 AGGCCTTGTACAATGGAAGGT 59.289 47.619 21.28 0.00 38.85 3.50
7481 8962 1.818674 GGCCTTGTACAATGGAAGGTG 59.181 52.381 21.28 4.72 38.85 4.00
7482 8963 2.514803 GCCTTGTACAATGGAAGGTGT 58.485 47.619 21.28 0.00 38.85 4.16
7483 8964 2.890945 GCCTTGTACAATGGAAGGTGTT 59.109 45.455 21.28 0.00 38.85 3.32
7484 8965 3.320826 GCCTTGTACAATGGAAGGTGTTT 59.679 43.478 21.28 0.00 38.85 2.83
7485 8966 4.521256 GCCTTGTACAATGGAAGGTGTTTA 59.479 41.667 21.28 0.00 38.85 2.01
7486 8967 5.335661 GCCTTGTACAATGGAAGGTGTTTAG 60.336 44.000 21.28 2.32 38.85 1.85
7487 8968 6.001460 CCTTGTACAATGGAAGGTGTTTAGA 58.999 40.000 9.13 0.00 32.94 2.10
7488 8969 6.149474 CCTTGTACAATGGAAGGTGTTTAGAG 59.851 42.308 9.13 0.00 32.94 2.43
7489 8970 6.428083 TGTACAATGGAAGGTGTTTAGAGA 57.572 37.500 0.00 0.00 0.00 3.10
7490 8971 6.464222 TGTACAATGGAAGGTGTTTAGAGAG 58.536 40.000 0.00 0.00 0.00 3.20
7491 8972 4.911390 ACAATGGAAGGTGTTTAGAGAGG 58.089 43.478 0.00 0.00 0.00 3.69
7492 8973 4.351111 ACAATGGAAGGTGTTTAGAGAGGT 59.649 41.667 0.00 0.00 0.00 3.85
7493 8974 4.559862 ATGGAAGGTGTTTAGAGAGGTG 57.440 45.455 0.00 0.00 0.00 4.00
7494 8975 3.314693 TGGAAGGTGTTTAGAGAGGTGT 58.685 45.455 0.00 0.00 0.00 4.16
7495 8976 3.714798 TGGAAGGTGTTTAGAGAGGTGTT 59.285 43.478 0.00 0.00 0.00 3.32
7496 8977 4.165372 TGGAAGGTGTTTAGAGAGGTGTTT 59.835 41.667 0.00 0.00 0.00 2.83
7497 8978 5.367352 TGGAAGGTGTTTAGAGAGGTGTTTA 59.633 40.000 0.00 0.00 0.00 2.01
7498 8979 5.932883 GGAAGGTGTTTAGAGAGGTGTTTAG 59.067 44.000 0.00 0.00 0.00 1.85
7499 8980 6.239515 GGAAGGTGTTTAGAGAGGTGTTTAGA 60.240 42.308 0.00 0.00 0.00 2.10
7500 8981 6.742559 AGGTGTTTAGAGAGGTGTTTAGAA 57.257 37.500 0.00 0.00 0.00 2.10
7501 8982 7.133133 AGGTGTTTAGAGAGGTGTTTAGAAA 57.867 36.000 0.00 0.00 0.00 2.52
7502 8983 7.571025 AGGTGTTTAGAGAGGTGTTTAGAAAA 58.429 34.615 0.00 0.00 0.00 2.29
7503 8984 8.050930 AGGTGTTTAGAGAGGTGTTTAGAAAAA 58.949 33.333 0.00 0.00 0.00 1.94
7504 8985 8.847196 GGTGTTTAGAGAGGTGTTTAGAAAAAT 58.153 33.333 0.00 0.00 0.00 1.82
7510 8991 8.095937 AGAGAGGTGTTTAGAAAAATAAACCG 57.904 34.615 6.84 0.00 42.45 4.44
7511 8992 7.174426 AGAGAGGTGTTTAGAAAAATAAACCGG 59.826 37.037 0.00 0.00 42.45 5.28
7512 8993 6.999871 AGAGGTGTTTAGAAAAATAAACCGGA 59.000 34.615 9.46 0.00 42.45 5.14
7513 8994 7.668469 AGAGGTGTTTAGAAAAATAAACCGGAT 59.332 33.333 9.46 0.00 42.45 4.18
7514 8995 8.185506 AGGTGTTTAGAAAAATAAACCGGATT 57.814 30.769 9.46 4.89 42.45 3.01
7515 8996 8.644216 AGGTGTTTAGAAAAATAAACCGGATTT 58.356 29.630 9.46 7.90 42.45 2.17
7516 8997 9.263538 GGTGTTTAGAAAAATAAACCGGATTTT 57.736 29.630 9.46 7.56 42.45 1.82
7539 9020 2.882132 GCACCGGCGCCTATTTTT 59.118 55.556 26.68 0.00 0.00 1.94
7540 9021 2.099994 GCACCGGCGCCTATTTTTA 58.900 52.632 26.68 0.00 0.00 1.52
7541 9022 0.248336 GCACCGGCGCCTATTTTTAC 60.248 55.000 26.68 1.44 0.00 2.01
7542 9023 1.088306 CACCGGCGCCTATTTTTACA 58.912 50.000 26.68 0.00 0.00 2.41
7543 9024 1.063469 CACCGGCGCCTATTTTTACAG 59.937 52.381 26.68 4.04 0.00 2.74
7544 9025 1.065998 ACCGGCGCCTATTTTTACAGA 60.066 47.619 26.68 0.00 0.00 3.41
7545 9026 2.011222 CCGGCGCCTATTTTTACAGAA 58.989 47.619 26.68 0.00 0.00 3.02
7546 9027 2.031683 CCGGCGCCTATTTTTACAGAAG 59.968 50.000 26.68 2.72 0.00 2.85
7547 9028 2.933906 CGGCGCCTATTTTTACAGAAGA 59.066 45.455 26.68 0.00 0.00 2.87
7548 9029 3.001330 CGGCGCCTATTTTTACAGAAGAG 59.999 47.826 26.68 0.00 0.00 2.85
7549 9030 4.189231 GGCGCCTATTTTTACAGAAGAGA 58.811 43.478 22.15 0.00 0.00 3.10
7550 9031 4.816925 GGCGCCTATTTTTACAGAAGAGAT 59.183 41.667 22.15 0.00 0.00 2.75
7551 9032 5.277538 GGCGCCTATTTTTACAGAAGAGATG 60.278 44.000 22.15 0.00 0.00 2.90
7552 9033 5.742446 CGCCTATTTTTACAGAAGAGATGC 58.258 41.667 0.00 0.00 0.00 3.91
7553 9034 5.525378 CGCCTATTTTTACAGAAGAGATGCT 59.475 40.000 0.00 0.00 0.00 3.79
7554 9035 6.037610 CGCCTATTTTTACAGAAGAGATGCTT 59.962 38.462 0.00 0.00 40.25 3.91
7555 9036 7.224753 CGCCTATTTTTACAGAAGAGATGCTTA 59.775 37.037 0.00 0.00 36.83 3.09
7556 9037 8.555361 GCCTATTTTTACAGAAGAGATGCTTAG 58.445 37.037 0.00 0.00 36.83 2.18
7557 9038 9.606631 CCTATTTTTACAGAAGAGATGCTTAGT 57.393 33.333 0.00 0.00 36.83 2.24
7573 9054 4.323553 CTTAGTTAAGCGCCTATCCTGT 57.676 45.455 2.29 0.00 0.00 4.00
7574 9055 5.449107 CTTAGTTAAGCGCCTATCCTGTA 57.551 43.478 2.29 0.00 0.00 2.74
7575 9056 3.729862 AGTTAAGCGCCTATCCTGTAC 57.270 47.619 2.29 0.00 0.00 2.90
7576 9057 3.028850 AGTTAAGCGCCTATCCTGTACA 58.971 45.455 2.29 0.00 0.00 2.90
7577 9058 3.449737 AGTTAAGCGCCTATCCTGTACAA 59.550 43.478 2.29 0.00 0.00 2.41
7578 9059 4.081309 AGTTAAGCGCCTATCCTGTACAAA 60.081 41.667 2.29 0.00 0.00 2.83
7579 9060 3.560636 AAGCGCCTATCCTGTACAAAT 57.439 42.857 2.29 0.00 0.00 2.32
7580 9061 4.682778 AAGCGCCTATCCTGTACAAATA 57.317 40.909 2.29 0.00 0.00 1.40
7581 9062 4.682778 AGCGCCTATCCTGTACAAATAA 57.317 40.909 2.29 0.00 0.00 1.40
7582 9063 4.632153 AGCGCCTATCCTGTACAAATAAG 58.368 43.478 2.29 0.00 0.00 1.73
7583 9064 3.186613 GCGCCTATCCTGTACAAATAAGC 59.813 47.826 0.00 3.14 0.00 3.09
7584 9065 3.428870 CGCCTATCCTGTACAAATAAGCG 59.571 47.826 18.73 18.73 31.80 4.68
7585 9066 3.186613 GCCTATCCTGTACAAATAAGCGC 59.813 47.826 0.00 0.00 0.00 5.92
7586 9067 3.746492 CCTATCCTGTACAAATAAGCGCC 59.254 47.826 2.29 0.00 0.00 6.53
7587 9068 1.647346 TCCTGTACAAATAAGCGCCG 58.353 50.000 2.29 0.00 0.00 6.46
7588 9069 0.655733 CCTGTACAAATAAGCGCCGG 59.344 55.000 2.29 0.00 0.00 6.13
7589 9070 1.365699 CTGTACAAATAAGCGCCGGT 58.634 50.000 2.29 0.00 0.00 5.28
7590 9071 1.062002 CTGTACAAATAAGCGCCGGTG 59.938 52.381 11.67 11.67 0.00 4.94
7591 9072 0.247934 GTACAAATAAGCGCCGGTGC 60.248 55.000 32.51 32.51 0.00 5.01
7598 9079 2.345991 AGCGCCGGTGCTTAAGAA 59.654 55.556 36.21 0.00 44.46 2.52
7599 9080 1.302192 AGCGCCGGTGCTTAAGAAA 60.302 52.632 36.21 0.00 44.46 2.52
7600 9081 0.887387 AGCGCCGGTGCTTAAGAAAA 60.887 50.000 36.21 0.00 44.46 2.29
7601 9082 0.454452 GCGCCGGTGCTTAAGAAAAG 60.454 55.000 32.27 0.00 34.43 2.27
7602 9083 0.872388 CGCCGGTGCTTAAGAAAAGT 59.128 50.000 6.67 0.00 34.43 2.66
7603 9084 1.136057 CGCCGGTGCTTAAGAAAAGTC 60.136 52.381 6.67 0.00 34.43 3.01
7604 9085 2.152016 GCCGGTGCTTAAGAAAAGTCT 58.848 47.619 6.67 0.00 32.22 3.24
7605 9086 2.095718 GCCGGTGCTTAAGAAAAGTCTG 60.096 50.000 6.67 0.00 31.58 3.51
7606 9087 3.399330 CCGGTGCTTAAGAAAAGTCTGA 58.601 45.455 6.67 0.00 33.05 3.27
7607 9088 4.003648 CCGGTGCTTAAGAAAAGTCTGAT 58.996 43.478 6.67 0.00 33.05 2.90
7608 9089 4.455877 CCGGTGCTTAAGAAAAGTCTGATT 59.544 41.667 6.67 0.00 33.05 2.57
7609 9090 5.048713 CCGGTGCTTAAGAAAAGTCTGATTT 60.049 40.000 6.67 0.00 33.05 2.17
7610 9091 6.148811 CCGGTGCTTAAGAAAAGTCTGATTTA 59.851 38.462 6.67 0.00 33.05 1.40
7611 9092 7.148239 CCGGTGCTTAAGAAAAGTCTGATTTAT 60.148 37.037 6.67 0.00 33.05 1.40
7612 9093 8.237267 CGGTGCTTAAGAAAAGTCTGATTTATT 58.763 33.333 6.67 0.00 33.05 1.40
7613 9094 9.914131 GGTGCTTAAGAAAAGTCTGATTTATTT 57.086 29.630 6.67 0.00 33.05 1.40
7621 9102 9.905171 AGAAAAGTCTGATTTATTTCTCAAAGC 57.095 29.630 0.00 0.00 35.96 3.51
7622 9103 9.683069 GAAAAGTCTGATTTATTTCTCAAAGCA 57.317 29.630 0.00 0.00 31.13 3.91
7623 9104 9.468532 AAAAGTCTGATTTATTTCTCAAAGCAC 57.531 29.630 0.00 0.00 29.07 4.40
7624 9105 7.150783 AGTCTGATTTATTTCTCAAAGCACC 57.849 36.000 0.00 0.00 29.07 5.01
7625 9106 6.944862 AGTCTGATTTATTTCTCAAAGCACCT 59.055 34.615 0.00 0.00 29.07 4.00
7626 9107 7.120432 AGTCTGATTTATTTCTCAAAGCACCTC 59.880 37.037 0.00 0.00 29.07 3.85
7627 9108 6.375455 TCTGATTTATTTCTCAAAGCACCTCC 59.625 38.462 0.00 0.00 29.07 4.30
7628 9109 5.418840 TGATTTATTTCTCAAAGCACCTCCC 59.581 40.000 0.00 0.00 0.00 4.30
7629 9110 2.222227 ATTTCTCAAAGCACCTCCCC 57.778 50.000 0.00 0.00 0.00 4.81
7630 9111 1.149101 TTTCTCAAAGCACCTCCCCT 58.851 50.000 0.00 0.00 0.00 4.79
7631 9112 2.038863 TTCTCAAAGCACCTCCCCTA 57.961 50.000 0.00 0.00 0.00 3.53
7632 9113 2.038863 TCTCAAAGCACCTCCCCTAA 57.961 50.000 0.00 0.00 0.00 2.69
7633 9114 1.909302 TCTCAAAGCACCTCCCCTAAG 59.091 52.381 0.00 0.00 0.00 2.18
7634 9115 0.328258 TCAAAGCACCTCCCCTAAGC 59.672 55.000 0.00 0.00 0.00 3.09
7635 9116 0.038166 CAAAGCACCTCCCCTAAGCA 59.962 55.000 0.00 0.00 0.00 3.91
7636 9117 0.038310 AAAGCACCTCCCCTAAGCAC 59.962 55.000 0.00 0.00 0.00 4.40
7637 9118 1.853250 AAGCACCTCCCCTAAGCACC 61.853 60.000 0.00 0.00 0.00 5.01
7638 9119 2.301738 GCACCTCCCCTAAGCACCT 61.302 63.158 0.00 0.00 0.00 4.00
7639 9120 1.908483 CACCTCCCCTAAGCACCTC 59.092 63.158 0.00 0.00 0.00 3.85
7640 9121 1.307084 ACCTCCCCTAAGCACCTCC 60.307 63.158 0.00 0.00 0.00 4.30
7641 9122 2.073101 CCTCCCCTAAGCACCTCCC 61.073 68.421 0.00 0.00 0.00 4.30
7642 9123 1.306997 CTCCCCTAAGCACCTCCCA 60.307 63.158 0.00 0.00 0.00 4.37
7643 9124 0.695803 CTCCCCTAAGCACCTCCCAT 60.696 60.000 0.00 0.00 0.00 4.00
7644 9125 0.253630 TCCCCTAAGCACCTCCCATT 60.254 55.000 0.00 0.00 0.00 3.16
7645 9126 0.106519 CCCCTAAGCACCTCCCATTG 60.107 60.000 0.00 0.00 0.00 2.82
7646 9127 0.625849 CCCTAAGCACCTCCCATTGT 59.374 55.000 0.00 0.00 0.00 2.71
7647 9128 1.843851 CCCTAAGCACCTCCCATTGTA 59.156 52.381 0.00 0.00 0.00 2.41
7648 9129 2.421529 CCCTAAGCACCTCCCATTGTAC 60.422 54.545 0.00 0.00 0.00 2.90
7649 9130 2.238646 CCTAAGCACCTCCCATTGTACA 59.761 50.000 0.00 0.00 0.00 2.90
7650 9131 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
7651 9132 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
7652 9133 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
7653 9134 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
7661 9142 3.305335 CCCATTGTACAAGGCTGTCAAAC 60.305 47.826 14.66 0.00 36.96 2.93
7663 9144 4.037923 CCATTGTACAAGGCTGTCAAACTT 59.962 41.667 14.66 0.00 36.96 2.66
7701 9182 1.414685 CCTTCCTCCCCTAACCCTAGG 60.415 61.905 0.06 0.06 44.10 3.02
7704 9185 1.837499 CTCCCCTAACCCTAGGCGG 60.837 68.421 2.05 0.35 43.25 6.13
7716 9197 0.746923 CTAGGCGGTTAGGGCAAACC 60.747 60.000 10.16 10.16 44.63 3.27
7730 9211 2.427506 GCAAACCCTAGACTTCACTGG 58.572 52.381 0.00 0.00 0.00 4.00
7736 9217 1.677217 CCTAGACTTCACTGGCAAGCC 60.677 57.143 3.61 3.61 0.00 4.35
7745 9226 0.252375 ACTGGCAAGCCCATGGATTT 60.252 50.000 15.22 3.89 44.33 2.17
7746 9227 0.177141 CTGGCAAGCCCATGGATTTG 59.823 55.000 15.22 17.37 44.33 2.32
7750 9231 2.378038 GCAAGCCCATGGATTTGTCTA 58.622 47.619 15.22 0.00 0.00 2.59
7756 9237 2.158608 CCCATGGATTTGTCTACCCTCC 60.159 54.545 15.22 0.00 0.00 4.30
7781 9262 4.643387 GCTCCGTTGGCTGGTGGT 62.643 66.667 0.00 0.00 0.00 4.16
7782 9263 2.669569 CTCCGTTGGCTGGTGGTG 60.670 66.667 0.00 0.00 0.00 4.17
7784 9265 4.263572 CCGTTGGCTGGTGGTGGA 62.264 66.667 0.00 0.00 0.00 4.02
7789 9270 3.721706 GGCTGGTGGTGGAGAGGG 61.722 72.222 0.00 0.00 0.00 4.30
7811 9292 0.467384 ATCCTGATGCCTTCACTCCG 59.533 55.000 0.00 0.00 0.00 4.63
7836 9325 3.493303 GTGGCAGGGAGGGGGATC 61.493 72.222 0.00 0.00 0.00 3.36
7847 9891 0.029989 AGGGGGATCCTGGTACCTTC 60.030 60.000 14.36 4.94 46.07 3.46
7851 9895 0.389757 GGATCCTGGTACCTTCGCTC 59.610 60.000 14.36 3.71 0.00 5.03
7861 9905 1.519455 CCTTCGCTCCGGTTAGCAG 60.519 63.158 14.86 5.86 42.91 4.24
7862 9906 1.215647 CTTCGCTCCGGTTAGCAGT 59.784 57.895 14.86 0.00 42.91 4.40
7864 9908 0.389426 TTCGCTCCGGTTAGCAGTTC 60.389 55.000 14.86 0.00 42.91 3.01
7894 9938 2.922740 TTTTTAGTCCTCGCAGGTGT 57.077 45.000 2.68 0.00 36.53 4.16
7908 9952 2.625823 GGTGTGGCGTTGTGGATGG 61.626 63.158 0.00 0.00 0.00 3.51
7920 9964 3.577313 GGATGGCGGCGCTTCTTC 61.577 66.667 32.30 21.14 0.00 2.87
7934 9978 4.227538 CGCTTCTTCGAGTTTGTCTTCTA 58.772 43.478 0.00 0.00 0.00 2.10
7944 9988 3.515901 AGTTTGTCTTCTAGGCTCCGATT 59.484 43.478 0.00 0.00 0.00 3.34
7950 9994 3.886505 TCTTCTAGGCTCCGATTCTTCTC 59.113 47.826 0.00 0.00 0.00 2.87
7956 10000 2.417515 GGCTCCGATTCTTCTCGAGTTT 60.418 50.000 13.13 0.00 41.12 2.66
7963 10007 4.322274 CGATTCTTCTCGAGTTTGTCTGTC 59.678 45.833 13.13 1.70 41.12 3.51
7966 10010 3.883489 TCTTCTCGAGTTTGTCTGTCTGA 59.117 43.478 13.13 0.00 0.00 3.27
7969 10013 2.721603 CTCGAGTTTGTCTGTCTGAACG 59.278 50.000 3.62 0.00 0.00 3.95
7978 10022 2.222678 GTCTGTCTGAACGTAGTCGACA 59.777 50.000 19.50 0.48 45.00 4.35
7992 10036 1.058695 GTCGACACGTAGATTTTGCCG 59.941 52.381 11.55 0.00 0.00 5.69
8000 10044 3.194116 ACGTAGATTTTGCCGTCTCCTTA 59.806 43.478 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.028242 CTAGTCTCTACAGCGCCACG 59.972 60.000 2.29 0.00 0.00 4.94
52 53 1.966451 AAAAACAGCGCCTCTCCCG 60.966 57.895 2.29 0.00 0.00 5.14
96 98 4.435121 GCCAAAAATAGTAGTCCACGAACG 60.435 45.833 0.00 0.00 0.00 3.95
219 222 2.088360 CGTAGAAAATGGCGCAAAAACG 59.912 45.455 10.83 3.84 0.00 3.60
265 268 0.757188 CGCCATCCTAGGGAGACAGT 60.757 60.000 9.46 0.00 34.05 3.55
290 306 0.028374 AAAAAGAACACGTTCGGCGG 59.972 50.000 7.21 0.00 46.52 6.13
392 411 7.703328 AGTCACCATTGTTAACAAAACTGTAG 58.297 34.615 23.97 12.25 39.55 2.74
591 610 1.457831 GGTCCCCTCACTCGGCTAT 60.458 63.158 0.00 0.00 0.00 2.97
709 728 0.466007 TTATCATGTGCTGCGGCCAT 60.466 50.000 16.57 14.88 37.74 4.40
719 738 2.621763 GCCTCCGGCTTATCATGTG 58.378 57.895 0.00 0.00 46.69 3.21
741 760 0.892755 CAACCTGCATCCATTGTGCT 59.107 50.000 0.00 0.00 42.92 4.40
792 811 5.626543 CACGTTGGATCTTCTTTTGTCATTG 59.373 40.000 0.00 0.00 0.00 2.82
795 814 4.196193 ACACGTTGGATCTTCTTTTGTCA 58.804 39.130 0.00 0.00 0.00 3.58
798 817 5.168526 TCAACACGTTGGATCTTCTTTTG 57.831 39.130 9.90 0.00 40.78 2.44
926 946 6.177610 TCTGTTATTTAGGGGTGTAAGCAAG 58.822 40.000 0.00 0.00 34.77 4.01
1038 1058 1.377202 TTGCCAGTTCGCATCTCCC 60.377 57.895 0.00 0.00 38.87 4.30
1048 1068 0.396974 TCCTTGCTTGGTTGCCAGTT 60.397 50.000 0.00 0.00 33.81 3.16
1108 1128 1.891150 CCTGTCAAATGCCAGCTCTTT 59.109 47.619 0.00 0.00 0.00 2.52
1122 1142 1.419381 TAGCACCACTGTTCCTGTCA 58.581 50.000 0.00 0.00 0.00 3.58
1127 1147 2.684881 CCATGAATAGCACCACTGTTCC 59.315 50.000 0.00 0.00 43.80 3.62
1449 1478 3.238788 TGAGTCAAGGACCTGTCACTA 57.761 47.619 0.00 0.00 32.18 2.74
1478 1507 2.766263 TCCTCCTTGTGCGTTGATAGAT 59.234 45.455 0.00 0.00 0.00 1.98
1714 1743 9.512435 CTTGATGGATGTTGAATGAACTATTTC 57.488 33.333 0.00 0.00 35.37 2.17
1720 1749 5.649782 ACCTTGATGGATGTTGAATGAAC 57.350 39.130 0.00 0.00 39.71 3.18
1798 1827 5.819379 TGCCTTAAAATTGTGCATGTGAAAA 59.181 32.000 0.00 0.00 0.00 2.29
1801 1830 4.597404 TGCCTTAAAATTGTGCATGTGA 57.403 36.364 0.00 0.00 0.00 3.58
1805 1834 7.558604 AGACATAATGCCTTAAAATTGTGCAT 58.441 30.769 0.00 0.00 44.02 3.96
1879 1908 9.959721 AGTATCTTGTTACACTGGTTAATCATT 57.040 29.630 0.00 0.00 0.00 2.57
2028 2061 5.769367 ACAAAGCCGAAGTTTTAAATCTCC 58.231 37.500 0.00 0.00 0.00 3.71
2029 2062 7.694388 AAACAAAGCCGAAGTTTTAAATCTC 57.306 32.000 0.00 0.00 31.95 2.75
2091 2124 6.037610 GCAGATAGGTAACAGGAAAACATCAG 59.962 42.308 0.00 0.00 41.41 2.90
2141 2177 7.060421 AGAACTTCCACTTCCAACATCTTTTA 58.940 34.615 0.00 0.00 0.00 1.52
2190 2226 6.779860 ACAAGTCCTTAACCATGATTACAGT 58.220 36.000 0.00 0.00 0.00 3.55
2249 2290 3.553508 GCCAATCATCAAACAAGTGTGCT 60.554 43.478 0.00 0.00 0.00 4.40
2270 2311 6.742718 GTGTCAATCAACAATACATACACTGC 59.257 38.462 0.00 0.00 33.64 4.40
2471 2512 6.474140 TGGAAATCCATTCAAATCTGATGG 57.526 37.500 0.00 0.00 42.01 3.51
2541 2582 7.328737 CGAGACTGTTGCTACTAAGTGTATTTT 59.671 37.037 0.00 0.00 0.00 1.82
2617 2658 1.340405 GGATTTCCCTGCTGAGAAGCA 60.340 52.381 0.00 0.00 43.22 3.91
2643 2684 4.211125 TGCACCACCAGACTTAATTTCAA 58.789 39.130 0.00 0.00 0.00 2.69
2723 2764 1.663911 TGTGCACTACCCTGGGTATT 58.336 50.000 25.32 17.54 37.56 1.89
2840 2881 6.934645 TGAGAGAAGTTATTCACAAACGGAAT 59.065 34.615 0.00 0.00 37.94 3.01
2926 2967 5.479124 ACGGACTCTGTGTATAAAAAGGT 57.521 39.130 0.00 0.00 0.00 3.50
2975 3016 2.361218 TCCATATGGGGGCATCAAGAT 58.639 47.619 21.78 0.00 37.22 2.40
3170 3211 5.300286 CCCCAGGTTGCTCATAAATCTTAAG 59.700 44.000 0.00 0.00 0.00 1.85
3406 3447 1.482593 CTGGTTGTAGGGGAGCTACAG 59.517 57.143 0.00 0.00 38.36 2.74
3457 3498 1.278985 CTGATGTAAGGTGAGGTGCCA 59.721 52.381 0.00 0.00 0.00 4.92
3529 3570 3.199946 TCCTGTCACAAGGATATGTTCCC 59.800 47.826 0.00 0.00 46.81 3.97
3597 3638 2.025863 GCCCTTGAATCCCATGACCAG 61.026 57.143 0.00 0.00 0.00 4.00
3599 3640 0.033208 TGCCCTTGAATCCCATGACC 60.033 55.000 0.00 0.00 0.00 4.02
3650 3691 4.881850 CCTAACTTCACCAACAGAACAGTT 59.118 41.667 0.00 0.00 0.00 3.16
3757 3798 2.033299 ACACATCTTGCGGACAACAAAG 59.967 45.455 0.00 0.00 0.00 2.77
3829 3870 0.108945 GCCATTTTGGTCAGAGCTGC 60.109 55.000 0.00 0.00 40.46 5.25
3883 3924 2.706190 ACTAAGGCCTTGTCTTCAGTGT 59.294 45.455 28.77 9.18 0.00 3.55
4045 4086 7.398829 TGCCTTACAGAAAAGGTACAATCATA 58.601 34.615 4.67 0.00 46.61 2.15
4241 4282 2.368655 ATTCCCGCAAAAGCAATCAC 57.631 45.000 0.00 0.00 0.00 3.06
4270 4311 9.175312 CCTAGAATCTAAATCATTATGCTGCAT 57.825 33.333 20.18 20.18 0.00 3.96
4392 4436 4.844884 AGTAGGAAGACAAGGGTATTTGC 58.155 43.478 0.00 0.00 0.00 3.68
4497 4626 0.389817 CGACCGAGGCAACATTCTCA 60.390 55.000 0.00 0.00 41.41 3.27
4560 5960 6.267471 TGGAAAAATGCCATTACAACTCTTCT 59.733 34.615 0.00 0.00 0.00 2.85
4591 5991 8.592809 AGTTGGAAAAATGCCATTACAATTCTA 58.407 29.630 0.00 0.00 34.90 2.10
4703 6104 4.985538 TGGGAGAAACAATCTAACAAGCT 58.014 39.130 0.00 0.00 38.96 3.74
4733 6134 3.314357 ACTTACCGCACAAAGTTTTCTCC 59.686 43.478 0.00 0.00 32.00 3.71
4749 6150 7.655328 CCTATGACTTGATGAAGATCACTTACC 59.345 40.741 0.00 0.00 38.38 2.85
4804 6205 5.690997 TTACCATGCACAATACGAAAACA 57.309 34.783 0.00 0.00 0.00 2.83
4886 6287 9.672086 CCTTAATAAAGTTTGATCGTGTTTCAA 57.328 29.630 0.00 0.00 0.00 2.69
5080 6482 5.107133 ACGGGTTTTATCTGTAATCACTCG 58.893 41.667 0.00 0.00 35.23 4.18
5177 6581 9.175060 CGATGATACAACACAAAAACATACAAA 57.825 29.630 0.00 0.00 0.00 2.83
5330 6734 6.701841 GGACTCGCACTAATTCATGAGAAATA 59.298 38.462 0.00 0.00 37.29 1.40
5349 6753 4.505922 GTGAGAGCAAATATTGAGGACTCG 59.494 45.833 0.00 0.00 0.00 4.18
5849 7254 6.690194 ATTATTTTCTGTCCAGACATCTGC 57.310 37.500 0.04 0.00 42.47 4.26
5922 7327 7.827236 CACTACTACCAAATACAAAGGGATCAA 59.173 37.037 0.00 0.00 0.00 2.57
6128 7541 3.058085 GCAAATTTGTTTTGGCTCATGGG 60.058 43.478 19.03 0.00 44.10 4.00
6451 7874 4.605968 CCACACAGTATCTGAAGAGATCG 58.394 47.826 3.70 0.00 39.76 3.69
6476 7899 3.651803 AGCAGTGACAGTCAAGAGTAC 57.348 47.619 4.32 0.00 0.00 2.73
6538 7971 8.119226 GCATACAAGTGAACATGATTACTTCTC 58.881 37.037 9.76 0.00 31.47 2.87
6605 8038 6.785076 TGTCAATCCTGGGTTAAATTGAGTA 58.215 36.000 7.72 0.15 38.44 2.59
6607 8040 6.567050 CATGTCAATCCTGGGTTAAATTGAG 58.433 40.000 7.72 0.00 38.44 3.02
6617 8050 2.104967 ACATTGCATGTCAATCCTGGG 58.895 47.619 11.03 4.77 43.21 4.45
6888 8321 4.327680 ACCTCAGTAGAAGTTGCCAAATC 58.672 43.478 0.00 0.00 0.00 2.17
6952 8424 1.289109 ACCTGAAAACGTCGGATGCG 61.289 55.000 0.00 0.00 34.07 4.73
6955 8427 0.034896 AGCACCTGAAAACGTCGGAT 59.965 50.000 0.00 0.00 34.07 4.18
7005 8477 1.363080 GATCCGGGTAGTCTTCGGC 59.637 63.158 0.00 0.00 43.10 5.54
7049 8521 2.262915 CTGACAGGGTCGACCAGC 59.737 66.667 34.40 19.09 43.89 4.85
7095 8567 1.152963 ACCACTGAAAAGCACGGCT 60.153 52.632 0.00 0.00 42.56 5.52
7096 8568 1.166531 AGACCACTGAAAAGCACGGC 61.167 55.000 0.00 0.00 0.00 5.68
7097 8569 0.588252 CAGACCACTGAAAAGCACGG 59.412 55.000 0.00 0.00 46.03 4.94
7110 8583 3.901222 TGGAGTCAGTTATGTTCAGACCA 59.099 43.478 0.00 0.00 0.00 4.02
7111 8584 4.220821 TCTGGAGTCAGTTATGTTCAGACC 59.779 45.833 0.00 0.00 41.59 3.85
7316 8789 5.390461 GCAAAAACTGGAAAACTGAAACACC 60.390 40.000 0.00 0.00 0.00 4.16
7319 8792 4.723754 GCGCAAAAACTGGAAAACTGAAAC 60.724 41.667 0.30 0.00 0.00 2.78
7324 8797 2.094234 ACAGCGCAAAAACTGGAAAACT 60.094 40.909 11.47 0.00 38.25 2.66
7325 8798 2.267426 ACAGCGCAAAAACTGGAAAAC 58.733 42.857 11.47 0.00 38.25 2.43
7359 8832 6.127168 TGAGAATAGGATCAGCGAAGGTAAAA 60.127 38.462 0.00 0.00 35.08 1.52
7389 8862 3.710722 AGGGAGGTGCTTGGCGAG 61.711 66.667 0.00 0.00 0.00 5.03
7390 8863 4.020617 CAGGGAGGTGCTTGGCGA 62.021 66.667 0.00 0.00 0.00 5.54
7440 8921 3.399330 CTTAGCACTTCCGTCCTTTCAA 58.601 45.455 0.00 0.00 0.00 2.69
7453 8934 3.347216 CATTGTACAAGGCCTTAGCACT 58.653 45.455 20.00 8.74 42.56 4.40
7464 8945 6.934645 TCTCTAAACACCTTCCATTGTACAAG 59.065 38.462 14.65 6.30 0.00 3.16
7465 8946 6.833041 TCTCTAAACACCTTCCATTGTACAA 58.167 36.000 11.41 11.41 0.00 2.41
7466 8947 6.428083 TCTCTAAACACCTTCCATTGTACA 57.572 37.500 0.00 0.00 0.00 2.90
7467 8948 5.875359 CCTCTCTAAACACCTTCCATTGTAC 59.125 44.000 0.00 0.00 0.00 2.90
7468 8949 5.546499 ACCTCTCTAAACACCTTCCATTGTA 59.454 40.000 0.00 0.00 0.00 2.41
7469 8950 4.351111 ACCTCTCTAAACACCTTCCATTGT 59.649 41.667 0.00 0.00 0.00 2.71
7470 8951 4.697352 CACCTCTCTAAACACCTTCCATTG 59.303 45.833 0.00 0.00 0.00 2.82
7471 8952 4.351111 ACACCTCTCTAAACACCTTCCATT 59.649 41.667 0.00 0.00 0.00 3.16
7472 8953 3.910627 ACACCTCTCTAAACACCTTCCAT 59.089 43.478 0.00 0.00 0.00 3.41
7473 8954 3.314693 ACACCTCTCTAAACACCTTCCA 58.685 45.455 0.00 0.00 0.00 3.53
7474 8955 4.353383 AACACCTCTCTAAACACCTTCC 57.647 45.455 0.00 0.00 0.00 3.46
7475 8956 6.756221 TCTAAACACCTCTCTAAACACCTTC 58.244 40.000 0.00 0.00 0.00 3.46
7476 8957 6.742559 TCTAAACACCTCTCTAAACACCTT 57.257 37.500 0.00 0.00 0.00 3.50
7477 8958 6.742559 TTCTAAACACCTCTCTAAACACCT 57.257 37.500 0.00 0.00 0.00 4.00
7478 8959 7.797038 TTTTCTAAACACCTCTCTAAACACC 57.203 36.000 0.00 0.00 0.00 4.16
7484 8965 9.211485 CGGTTTATTTTTCTAAACACCTCTCTA 57.789 33.333 8.47 0.00 41.36 2.43
7485 8966 7.174426 CCGGTTTATTTTTCTAAACACCTCTCT 59.826 37.037 0.00 0.00 41.36 3.10
7486 8967 7.173735 TCCGGTTTATTTTTCTAAACACCTCTC 59.826 37.037 0.00 0.00 41.36 3.20
7487 8968 6.999871 TCCGGTTTATTTTTCTAAACACCTCT 59.000 34.615 0.00 0.00 41.36 3.69
7488 8969 7.205737 TCCGGTTTATTTTTCTAAACACCTC 57.794 36.000 0.00 0.00 41.36 3.85
7489 8970 7.770366 ATCCGGTTTATTTTTCTAAACACCT 57.230 32.000 0.00 0.00 41.36 4.00
7490 8971 8.821147 AAATCCGGTTTATTTTTCTAAACACC 57.179 30.769 0.00 0.00 41.36 4.16
7514 8995 2.026879 GCGCCGGTGCTTCAAAAA 59.973 55.556 32.27 0.00 34.43 1.94
7515 8996 3.972276 GGCGCCGGTGCTTCAAAA 61.972 61.111 36.63 0.00 34.43 2.44
7516 8997 2.813226 ATAGGCGCCGGTGCTTCAAA 62.813 55.000 36.63 17.48 34.43 2.69
7517 8998 2.813226 AATAGGCGCCGGTGCTTCAA 62.813 55.000 36.63 18.25 34.43 2.69
7518 8999 2.813226 AAATAGGCGCCGGTGCTTCA 62.813 55.000 36.63 22.82 34.43 3.02
7519 9000 1.654023 AAAATAGGCGCCGGTGCTTC 61.654 55.000 36.63 22.67 34.43 3.86
7520 9001 1.248101 AAAAATAGGCGCCGGTGCTT 61.248 50.000 36.63 32.58 34.43 3.91
7521 9002 0.393267 TAAAAATAGGCGCCGGTGCT 60.393 50.000 36.63 24.87 34.43 4.40
7522 9003 0.248336 GTAAAAATAGGCGCCGGTGC 60.248 55.000 31.86 31.86 0.00 5.01
7523 9004 1.063469 CTGTAAAAATAGGCGCCGGTG 59.937 52.381 23.20 11.67 0.00 4.94
7524 9005 1.065998 TCTGTAAAAATAGGCGCCGGT 60.066 47.619 23.20 11.27 0.00 5.28
7525 9006 1.658994 TCTGTAAAAATAGGCGCCGG 58.341 50.000 23.20 0.00 0.00 6.13
7526 9007 2.933906 TCTTCTGTAAAAATAGGCGCCG 59.066 45.455 23.20 1.97 0.00 6.46
7527 9008 4.189231 TCTCTTCTGTAAAAATAGGCGCC 58.811 43.478 21.89 21.89 0.00 6.53
7528 9009 5.742446 CATCTCTTCTGTAAAAATAGGCGC 58.258 41.667 0.00 0.00 0.00 6.53
7529 9010 5.525378 AGCATCTCTTCTGTAAAAATAGGCG 59.475 40.000 0.00 0.00 0.00 5.52
7530 9011 6.934048 AGCATCTCTTCTGTAAAAATAGGC 57.066 37.500 0.00 0.00 0.00 3.93
7531 9012 9.606631 ACTAAGCATCTCTTCTGTAAAAATAGG 57.393 33.333 0.00 0.00 36.25 2.57
7552 9033 4.323553 ACAGGATAGGCGCTTAACTAAG 57.676 45.455 7.64 0.01 36.40 2.18
7553 9034 4.646040 TGTACAGGATAGGCGCTTAACTAA 59.354 41.667 7.64 0.00 0.00 2.24
7554 9035 4.209538 TGTACAGGATAGGCGCTTAACTA 58.790 43.478 7.64 0.00 0.00 2.24
7555 9036 3.028850 TGTACAGGATAGGCGCTTAACT 58.971 45.455 7.64 4.18 0.00 2.24
7556 9037 3.447918 TGTACAGGATAGGCGCTTAAC 57.552 47.619 7.64 2.01 0.00 2.01
7557 9038 4.475051 TTTGTACAGGATAGGCGCTTAA 57.525 40.909 7.64 0.00 0.00 1.85
7558 9039 4.682778 ATTTGTACAGGATAGGCGCTTA 57.317 40.909 7.64 3.82 0.00 3.09
7559 9040 3.560636 ATTTGTACAGGATAGGCGCTT 57.439 42.857 7.64 0.52 0.00 4.68
7560 9041 4.632153 CTTATTTGTACAGGATAGGCGCT 58.368 43.478 7.64 0.00 0.00 5.92
7561 9042 3.186613 GCTTATTTGTACAGGATAGGCGC 59.813 47.826 14.96 0.00 0.00 6.53
7562 9043 3.428870 CGCTTATTTGTACAGGATAGGCG 59.571 47.826 27.06 27.06 42.48 5.52
7563 9044 3.186613 GCGCTTATTTGTACAGGATAGGC 59.813 47.826 17.87 17.87 0.00 3.93
7564 9045 3.746492 GGCGCTTATTTGTACAGGATAGG 59.254 47.826 7.64 1.37 0.00 2.57
7565 9046 3.428870 CGGCGCTTATTTGTACAGGATAG 59.571 47.826 7.64 0.00 0.00 2.08
7566 9047 3.386486 CGGCGCTTATTTGTACAGGATA 58.614 45.455 7.64 0.00 0.00 2.59
7567 9048 2.210116 CGGCGCTTATTTGTACAGGAT 58.790 47.619 7.64 0.00 0.00 3.24
7568 9049 1.647346 CGGCGCTTATTTGTACAGGA 58.353 50.000 7.64 0.00 0.00 3.86
7569 9050 0.655733 CCGGCGCTTATTTGTACAGG 59.344 55.000 7.64 0.00 0.00 4.00
7570 9051 1.062002 CACCGGCGCTTATTTGTACAG 59.938 52.381 7.64 0.00 0.00 2.74
7571 9052 1.080298 CACCGGCGCTTATTTGTACA 58.920 50.000 7.64 0.00 0.00 2.90
7572 9053 0.247934 GCACCGGCGCTTATTTGTAC 60.248 55.000 7.34 0.00 0.00 2.90
7573 9054 2.091533 GCACCGGCGCTTATTTGTA 58.908 52.632 7.34 0.00 0.00 2.41
7574 9055 2.874751 GCACCGGCGCTTATTTGT 59.125 55.556 7.34 0.00 0.00 2.83
7584 9065 2.095718 CAGACTTTTCTTAAGCACCGGC 60.096 50.000 0.00 0.00 41.61 6.13
7585 9066 3.399330 TCAGACTTTTCTTAAGCACCGG 58.601 45.455 0.00 0.00 0.00 5.28
7586 9067 5.613358 AATCAGACTTTTCTTAAGCACCG 57.387 39.130 0.00 0.00 0.00 4.94
7587 9068 9.914131 AAATAAATCAGACTTTTCTTAAGCACC 57.086 29.630 0.00 0.00 0.00 5.01
7595 9076 9.905171 GCTTTGAGAAATAAATCAGACTTTTCT 57.095 29.630 0.00 0.00 38.86 2.52
7596 9077 9.683069 TGCTTTGAGAAATAAATCAGACTTTTC 57.317 29.630 0.00 0.00 0.00 2.29
7597 9078 9.468532 GTGCTTTGAGAAATAAATCAGACTTTT 57.531 29.630 0.00 0.00 0.00 2.27
7598 9079 8.084684 GGTGCTTTGAGAAATAAATCAGACTTT 58.915 33.333 0.00 0.00 0.00 2.66
7599 9080 7.449704 AGGTGCTTTGAGAAATAAATCAGACTT 59.550 33.333 0.00 0.00 0.00 3.01
7600 9081 6.944862 AGGTGCTTTGAGAAATAAATCAGACT 59.055 34.615 0.00 0.00 0.00 3.24
7601 9082 7.150783 AGGTGCTTTGAGAAATAAATCAGAC 57.849 36.000 0.00 0.00 0.00 3.51
7602 9083 6.375455 GGAGGTGCTTTGAGAAATAAATCAGA 59.625 38.462 0.00 0.00 0.00 3.27
7603 9084 6.405176 GGGAGGTGCTTTGAGAAATAAATCAG 60.405 42.308 0.00 0.00 0.00 2.90
7604 9085 5.418840 GGGAGGTGCTTTGAGAAATAAATCA 59.581 40.000 0.00 0.00 0.00 2.57
7605 9086 5.163509 GGGGAGGTGCTTTGAGAAATAAATC 60.164 44.000 0.00 0.00 0.00 2.17
7606 9087 4.711846 GGGGAGGTGCTTTGAGAAATAAAT 59.288 41.667 0.00 0.00 0.00 1.40
7607 9088 4.086457 GGGGAGGTGCTTTGAGAAATAAA 58.914 43.478 0.00 0.00 0.00 1.40
7608 9089 3.333680 AGGGGAGGTGCTTTGAGAAATAA 59.666 43.478 0.00 0.00 0.00 1.40
7609 9090 2.919602 AGGGGAGGTGCTTTGAGAAATA 59.080 45.455 0.00 0.00 0.00 1.40
7610 9091 1.713078 AGGGGAGGTGCTTTGAGAAAT 59.287 47.619 0.00 0.00 0.00 2.17
7611 9092 1.149101 AGGGGAGGTGCTTTGAGAAA 58.851 50.000 0.00 0.00 0.00 2.52
7612 9093 2.038863 TAGGGGAGGTGCTTTGAGAA 57.961 50.000 0.00 0.00 0.00 2.87
7613 9094 1.909302 CTTAGGGGAGGTGCTTTGAGA 59.091 52.381 0.00 0.00 0.00 3.27
7614 9095 1.680249 GCTTAGGGGAGGTGCTTTGAG 60.680 57.143 0.00 0.00 0.00 3.02
7615 9096 0.328258 GCTTAGGGGAGGTGCTTTGA 59.672 55.000 0.00 0.00 0.00 2.69
7616 9097 0.038166 TGCTTAGGGGAGGTGCTTTG 59.962 55.000 0.00 0.00 0.00 2.77
7617 9098 0.038310 GTGCTTAGGGGAGGTGCTTT 59.962 55.000 0.00 0.00 0.00 3.51
7618 9099 1.685820 GTGCTTAGGGGAGGTGCTT 59.314 57.895 0.00 0.00 0.00 3.91
7619 9100 2.301738 GGTGCTTAGGGGAGGTGCT 61.302 63.158 0.00 0.00 0.00 4.40
7620 9101 2.258748 GAGGTGCTTAGGGGAGGTGC 62.259 65.000 0.00 0.00 0.00 5.01
7621 9102 1.627297 GGAGGTGCTTAGGGGAGGTG 61.627 65.000 0.00 0.00 0.00 4.00
7622 9103 1.307084 GGAGGTGCTTAGGGGAGGT 60.307 63.158 0.00 0.00 0.00 3.85
7623 9104 2.073101 GGGAGGTGCTTAGGGGAGG 61.073 68.421 0.00 0.00 0.00 4.30
7624 9105 0.695803 ATGGGAGGTGCTTAGGGGAG 60.696 60.000 0.00 0.00 0.00 4.30
7625 9106 0.253630 AATGGGAGGTGCTTAGGGGA 60.254 55.000 0.00 0.00 0.00 4.81
7626 9107 0.106519 CAATGGGAGGTGCTTAGGGG 60.107 60.000 0.00 0.00 0.00 4.79
7627 9108 0.625849 ACAATGGGAGGTGCTTAGGG 59.374 55.000 0.00 0.00 0.00 3.53
7628 9109 2.238646 TGTACAATGGGAGGTGCTTAGG 59.761 50.000 0.00 0.00 0.00 2.69
7629 9110 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
7630 9111 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
7631 9112 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
7632 9113 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
7633 9114 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
7634 9115 1.004745 AGCCTTGTACAATGGGAGGTG 59.995 52.381 16.08 0.00 0.00 4.00
7635 9116 1.004745 CAGCCTTGTACAATGGGAGGT 59.995 52.381 16.08 3.98 0.00 3.85
7636 9117 1.004745 ACAGCCTTGTACAATGGGAGG 59.995 52.381 16.08 11.34 35.25 4.30
7637 9118 2.290260 TGACAGCCTTGTACAATGGGAG 60.290 50.000 16.08 10.34 37.76 4.30
7638 9119 1.702401 TGACAGCCTTGTACAATGGGA 59.298 47.619 16.08 0.00 37.76 4.37
7639 9120 2.198827 TGACAGCCTTGTACAATGGG 57.801 50.000 19.36 14.91 37.76 4.00
7640 9121 3.569701 AGTTTGACAGCCTTGTACAATGG 59.430 43.478 9.13 13.26 37.76 3.16
7641 9122 4.836125 AGTTTGACAGCCTTGTACAATG 57.164 40.909 9.13 7.68 37.76 2.82
7642 9123 4.037923 CCAAGTTTGACAGCCTTGTACAAT 59.962 41.667 9.13 0.00 37.76 2.71
7643 9124 3.380004 CCAAGTTTGACAGCCTTGTACAA 59.620 43.478 8.28 8.28 37.76 2.41
7644 9125 2.948979 CCAAGTTTGACAGCCTTGTACA 59.051 45.455 12.50 0.00 37.76 2.90
7645 9126 2.949644 ACCAAGTTTGACAGCCTTGTAC 59.050 45.455 12.50 0.00 37.76 2.90
7646 9127 3.290948 ACCAAGTTTGACAGCCTTGTA 57.709 42.857 12.50 0.00 37.76 2.41
7647 9128 2.143876 ACCAAGTTTGACAGCCTTGT 57.856 45.000 12.50 0.00 41.18 3.16
7648 9129 4.647424 TTTACCAAGTTTGACAGCCTTG 57.353 40.909 8.48 8.48 36.26 3.61
7649 9130 5.669164 TTTTTACCAAGTTTGACAGCCTT 57.331 34.783 0.00 0.00 0.00 4.35
7675 9156 0.264955 TTAGGGGAGGAAGGCGAGAT 59.735 55.000 0.00 0.00 0.00 2.75
7679 9160 2.743179 GGGTTAGGGGAGGAAGGCG 61.743 68.421 0.00 0.00 0.00 5.52
7681 9162 1.414685 CCTAGGGTTAGGGGAGGAAGG 60.415 61.905 0.00 0.00 42.44 3.46
7682 9163 2.040683 GCCTAGGGTTAGGGGAGGAAG 61.041 61.905 11.72 0.00 45.66 3.46
7716 9197 1.677217 GGCTTGCCAGTGAAGTCTAGG 60.677 57.143 6.79 0.00 0.00 3.02
7721 9202 0.896940 CATGGGCTTGCCAGTGAAGT 60.897 55.000 14.04 0.00 0.00 3.01
7730 9211 1.188863 AGACAAATCCATGGGCTTGC 58.811 50.000 20.43 14.99 0.00 4.01
7736 9217 2.485479 CGGAGGGTAGACAAATCCATGG 60.485 54.545 4.97 4.97 0.00 3.66
7745 9226 1.076485 GGTAGGCGGAGGGTAGACA 60.076 63.158 0.00 0.00 0.00 3.41
7746 9227 2.192187 CGGTAGGCGGAGGGTAGAC 61.192 68.421 0.00 0.00 0.00 2.59
7767 9248 4.263572 TCCACCACCAGCCAACGG 62.264 66.667 0.00 0.00 0.00 4.44
7770 9251 2.528818 CCTCTCCACCACCAGCCAA 61.529 63.158 0.00 0.00 0.00 4.52
7781 9262 0.104777 CATCAGGATCCCCCTCTCCA 60.105 60.000 8.55 0.00 45.60 3.86
7782 9263 1.487850 GCATCAGGATCCCCCTCTCC 61.488 65.000 8.55 0.00 45.60 3.71
7784 9265 1.463018 GGCATCAGGATCCCCCTCT 60.463 63.158 8.55 0.00 45.60 3.69
7789 9270 0.842635 AGTGAAGGCATCAGGATCCC 59.157 55.000 8.55 0.00 39.19 3.85
7796 9277 3.805928 ACCGGAGTGAAGGCATCA 58.194 55.556 9.46 0.00 35.05 3.07
7825 9314 1.461655 GTACCAGGATCCCCCTCCC 60.462 68.421 8.55 0.00 45.60 4.30
7834 9323 1.392710 CGGAGCGAAGGTACCAGGAT 61.393 60.000 15.94 0.34 39.88 3.24
7836 9325 2.494918 CGGAGCGAAGGTACCAGG 59.505 66.667 15.94 3.46 39.88 4.45
7842 9331 2.227089 CTGCTAACCGGAGCGAAGGT 62.227 60.000 9.46 0.00 45.99 3.50
7847 9891 1.078759 CTGAACTGCTAACCGGAGCG 61.079 60.000 9.46 6.94 45.99 5.03
7851 9895 2.618053 CTAACCTGAACTGCTAACCGG 58.382 52.381 0.00 0.00 0.00 5.28
7908 9952 2.668280 AAACTCGAAGAAGCGCCGC 61.668 57.895 2.29 0.00 34.09 6.53
7920 9964 2.732597 CGGAGCCTAGAAGACAAACTCG 60.733 54.545 0.00 0.00 0.00 4.18
7923 9967 3.528597 ATCGGAGCCTAGAAGACAAAC 57.471 47.619 0.00 0.00 0.00 2.93
7934 9978 1.028905 CTCGAGAAGAATCGGAGCCT 58.971 55.000 6.58 0.00 42.93 4.58
7944 9988 3.883489 TCAGACAGACAAACTCGAGAAGA 59.117 43.478 21.68 0.00 0.00 2.87
7950 9994 2.460918 ACGTTCAGACAGACAAACTCG 58.539 47.619 0.00 0.00 0.00 4.18
7956 10000 2.222678 GTCGACTACGTTCAGACAGACA 59.777 50.000 8.70 0.00 40.69 3.41
7969 10013 3.302699 GGCAAAATCTACGTGTCGACTAC 59.697 47.826 17.92 12.01 0.00 2.73
7978 10022 1.549170 AGGAGACGGCAAAATCTACGT 59.451 47.619 0.00 0.00 42.88 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.