Multiple sequence alignment - TraesCS5B01G274300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G274300 chr5B 100.000 5412 0 0 1 5412 460258150 460263561 0.000000e+00 9995.0
1 TraesCS5B01G274300 chr5B 80.620 129 17 6 5236 5357 551461524 551461651 5.770000e-15 93.5
2 TraesCS5B01G274300 chr5B 79.851 134 19 6 5282 5408 120951153 120951285 2.080000e-14 91.6
3 TraesCS5B01G274300 chr5B 94.872 39 2 0 3692 3730 460261807 460261845 1.630000e-05 62.1
4 TraesCS5B01G274300 chr5B 94.872 39 2 0 3658 3696 460261841 460261879 1.630000e-05 62.1
5 TraesCS5B01G274300 chr5A 93.140 4096 163 51 831 4886 484072104 484076121 0.000000e+00 5899.0
6 TraesCS5B01G274300 chr5A 85.864 191 24 1 5211 5398 484076407 484076597 3.310000e-47 200.0
7 TraesCS5B01G274300 chr5A 94.444 126 3 3 565 687 484071937 484072061 1.990000e-44 191.0
8 TraesCS5B01G274300 chr5A 95.122 41 0 1 3658 3696 484074902 484074942 4.530000e-06 63.9
9 TraesCS5B01G274300 chr5D 93.627 2887 109 31 834 3696 383769617 383772452 0.000000e+00 4242.0
10 TraesCS5B01G274300 chr5D 95.165 1241 43 8 3692 4920 383772412 383773647 0.000000e+00 1943.0
11 TraesCS5B01G274300 chr5D 89.630 405 35 7 1 401 93059146 93058745 4.840000e-140 508.0
12 TraesCS5B01G274300 chr5D 97.101 138 3 1 563 699 383769405 383769542 1.170000e-56 231.0
13 TraesCS5B01G274300 chr3B 90.704 398 34 3 1 397 628727146 628727541 1.340000e-145 527.0
14 TraesCS5B01G274300 chr4A 90.704 398 32 5 1 397 717617029 717616636 4.800000e-145 525.0
15 TraesCS5B01G274300 chr4A 80.791 177 27 4 5236 5406 565844799 565844624 1.220000e-26 132.0
16 TraesCS5B01G274300 chr4A 79.333 150 25 3 5236 5379 722444591 722444442 3.450000e-17 100.0
17 TraesCS5B01G274300 chr2B 90.680 397 29 6 3 397 194058088 194058478 6.210000e-144 521.0
18 TraesCS5B01G274300 chr7B 90.250 400 36 3 2 400 117821979 117821582 2.230000e-143 520.0
19 TraesCS5B01G274300 chr7B 89.750 400 36 5 1 397 611965562 611965959 1.740000e-139 507.0
20 TraesCS5B01G274300 chr7B 89.447 398 38 4 1 397 578154545 578154939 2.910000e-137 499.0
21 TraesCS5B01G274300 chr7B 86.017 236 31 2 4153 4387 174045099 174044865 9.000000e-63 252.0
22 TraesCS5B01G274300 chr2D 90.793 391 31 5 1 389 422518455 422518068 8.040000e-143 518.0
23 TraesCS5B01G274300 chr2D 77.901 181 32 5 5236 5409 45690503 45690324 7.410000e-19 106.0
24 TraesCS5B01G274300 chr6B 89.801 402 37 4 1 401 688744563 688744961 3.740000e-141 512.0
25 TraesCS5B01G274300 chr6B 83.333 84 9 5 5320 5399 671723639 671723557 7.520000e-09 73.1
26 TraesCS5B01G274300 chr7D 85.232 237 33 2 4153 4388 222527457 222527692 5.420000e-60 243.0
27 TraesCS5B01G274300 chr6A 78.916 166 25 7 5237 5395 225672432 225672594 2.670000e-18 104.0
28 TraesCS5B01G274300 chr4B 79.355 155 20 10 5249 5395 382773224 382773074 1.240000e-16 99.0
29 TraesCS5B01G274300 chr2A 80.000 125 18 3 5235 5353 759970626 759970749 9.660000e-13 86.1
30 TraesCS5B01G274300 chr1D 85.526 76 8 3 5070 5144 477489038 477489111 5.810000e-10 76.8
31 TraesCS5B01G274300 chr6D 80.263 76 15 0 5235 5310 51194454 51194529 2.110000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G274300 chr5B 460258150 460263561 5411 False 3373.066667 9995 96.581333 1 5412 3 chr5B.!!$F3 5411
1 TraesCS5B01G274300 chr5A 484071937 484076597 4660 False 1588.475000 5899 92.142500 565 5398 4 chr5A.!!$F1 4833
2 TraesCS5B01G274300 chr5D 383769405 383773647 4242 False 2138.666667 4242 95.297667 563 4920 3 chr5D.!!$F1 4357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 867 0.107897 ATATTTCAGACACCGCGCCA 60.108 50.0 0.00 0.0 0.00 5.69 F
1873 1880 0.251916 CGGGACAGGCTACAATTGGA 59.748 55.0 10.83 0.0 0.00 3.53 F
2396 2417 1.032014 TGTCCAAAGCTGTTCTTGCC 58.968 50.0 0.00 0.0 34.67 4.52 F
3966 3998 1.032657 TGAGCCGTCCTGAGCTACTC 61.033 60.0 0.00 0.0 40.11 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2587 2608 1.209019 GCTGGAGCTCTGATTTCTGGA 59.791 52.381 14.64 0.00 38.21 3.86 R
3331 3361 0.786435 AAAGCCCTCTCCACCCATTT 59.214 50.000 0.00 0.00 0.00 2.32 R
3993 4025 0.740737 AGTTGCAGGCAGTGTTGAAC 59.259 50.000 0.00 0.00 0.00 3.18 R
5365 5525 0.029989 AGGGGGATCCTGGTACCTTC 60.030 60.000 14.36 4.94 46.07 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.266055 CCGGAGGCCACTGAAGAC 59.734 66.667 11.05 0.00 46.14 3.01
29 30 2.125912 CGGAGGCCACTGAAGACG 60.126 66.667 5.01 0.00 0.00 4.18
30 31 2.266055 GGAGGCCACTGAAGACGG 59.734 66.667 5.01 0.00 0.00 4.79
31 32 2.435059 GAGGCCACTGAAGACGGC 60.435 66.667 5.01 6.90 45.47 5.68
34 35 3.050275 GCCACTGAAGACGGCCAC 61.050 66.667 2.24 0.00 40.07 5.01
36 37 2.738521 CACTGAAGACGGCCACGG 60.739 66.667 2.24 0.00 46.48 4.94
113 114 8.994429 TGTTTTTATGTTAATTATGGCACTGG 57.006 30.769 0.00 0.00 0.00 4.00
114 115 8.037758 TGTTTTTATGTTAATTATGGCACTGGG 58.962 33.333 0.00 0.00 0.00 4.45
115 116 5.782893 TTATGTTAATTATGGCACTGGGC 57.217 39.130 0.00 0.00 43.74 5.36
124 125 3.263941 GCACTGGGCCGTTAAGTG 58.736 61.111 15.44 15.44 43.37 3.16
125 126 1.302192 GCACTGGGCCGTTAAGTGA 60.302 57.895 22.04 0.00 43.22 3.41
126 127 0.887387 GCACTGGGCCGTTAAGTGAA 60.887 55.000 22.04 0.00 43.22 3.18
127 128 0.872388 CACTGGGCCGTTAAGTGAAC 59.128 55.000 14.80 0.00 43.22 3.18
128 129 0.763035 ACTGGGCCGTTAAGTGAACT 59.237 50.000 0.00 0.00 35.74 3.01
129 130 1.156736 CTGGGCCGTTAAGTGAACTG 58.843 55.000 0.00 0.00 35.74 3.16
130 131 0.470766 TGGGCCGTTAAGTGAACTGT 59.529 50.000 0.00 0.00 35.74 3.55
131 132 1.134037 TGGGCCGTTAAGTGAACTGTT 60.134 47.619 0.00 0.00 35.74 3.16
132 133 2.104451 TGGGCCGTTAAGTGAACTGTTA 59.896 45.455 0.00 0.00 35.74 2.41
133 134 3.140623 GGGCCGTTAAGTGAACTGTTAA 58.859 45.455 0.00 0.00 35.74 2.01
134 135 3.565063 GGGCCGTTAAGTGAACTGTTAAA 59.435 43.478 0.00 0.00 35.74 1.52
135 136 4.530388 GGCCGTTAAGTGAACTGTTAAAC 58.470 43.478 0.00 0.00 35.74 2.01
136 137 4.274214 GGCCGTTAAGTGAACTGTTAAACT 59.726 41.667 0.00 0.00 35.74 2.66
137 138 5.202640 GCCGTTAAGTGAACTGTTAAACTG 58.797 41.667 8.60 0.00 35.74 3.16
138 139 5.744490 CCGTTAAGTGAACTGTTAAACTGG 58.256 41.667 8.60 3.50 35.74 4.00
139 140 5.277634 CCGTTAAGTGAACTGTTAAACTGGG 60.278 44.000 8.60 5.61 35.74 4.45
140 141 5.516996 GTTAAGTGAACTGTTAAACTGGGC 58.483 41.667 8.60 0.97 34.96 5.36
141 142 2.583143 AGTGAACTGTTAAACTGGGCC 58.417 47.619 0.00 0.00 0.00 5.80
142 143 1.265905 GTGAACTGTTAAACTGGGCCG 59.734 52.381 0.00 0.00 0.00 6.13
143 144 1.134037 TGAACTGTTAAACTGGGCCGT 60.134 47.619 0.00 0.00 0.00 5.68
144 145 1.951602 GAACTGTTAAACTGGGCCGTT 59.048 47.619 0.00 3.25 0.00 4.44
145 146 2.061509 ACTGTTAAACTGGGCCGTTT 57.938 45.000 23.05 23.05 40.06 3.60
146 147 2.380941 ACTGTTAAACTGGGCCGTTTT 58.619 42.857 24.11 16.53 38.08 2.43
147 148 3.553904 ACTGTTAAACTGGGCCGTTTTA 58.446 40.909 24.11 15.66 38.08 1.52
148 149 4.146564 ACTGTTAAACTGGGCCGTTTTAT 58.853 39.130 24.11 9.43 38.08 1.40
149 150 4.022676 ACTGTTAAACTGGGCCGTTTTATG 60.023 41.667 24.11 16.44 38.08 1.90
150 151 4.142790 TGTTAAACTGGGCCGTTTTATGA 58.857 39.130 24.11 9.74 38.08 2.15
151 152 4.767928 TGTTAAACTGGGCCGTTTTATGAT 59.232 37.500 24.11 8.31 38.08 2.45
152 153 5.106078 TGTTAAACTGGGCCGTTTTATGATC 60.106 40.000 24.11 11.16 38.08 2.92
153 154 1.663695 ACTGGGCCGTTTTATGATCG 58.336 50.000 0.00 0.00 0.00 3.69
154 155 1.065709 ACTGGGCCGTTTTATGATCGT 60.066 47.619 0.00 0.00 0.00 3.73
155 156 1.330521 CTGGGCCGTTTTATGATCGTG 59.669 52.381 0.00 0.00 0.00 4.35
156 157 1.066071 TGGGCCGTTTTATGATCGTGA 60.066 47.619 0.00 0.00 0.00 4.35
157 158 1.329599 GGGCCGTTTTATGATCGTGAC 59.670 52.381 0.00 0.00 0.00 3.67
158 159 1.329599 GGCCGTTTTATGATCGTGACC 59.670 52.381 0.00 0.00 0.00 4.02
159 160 1.329599 GCCGTTTTATGATCGTGACCC 59.670 52.381 0.00 0.00 0.00 4.46
160 161 1.937899 CCGTTTTATGATCGTGACCCC 59.062 52.381 0.00 0.00 0.00 4.95
161 162 2.419574 CCGTTTTATGATCGTGACCCCT 60.420 50.000 0.00 0.00 0.00 4.79
162 163 3.181473 CCGTTTTATGATCGTGACCCCTA 60.181 47.826 0.00 0.00 0.00 3.53
163 164 4.435425 CGTTTTATGATCGTGACCCCTAA 58.565 43.478 0.00 0.00 0.00 2.69
164 165 4.269363 CGTTTTATGATCGTGACCCCTAAC 59.731 45.833 0.00 0.00 0.00 2.34
165 166 5.425630 GTTTTATGATCGTGACCCCTAACT 58.574 41.667 0.00 0.00 0.00 2.24
166 167 6.576185 GTTTTATGATCGTGACCCCTAACTA 58.424 40.000 0.00 0.00 0.00 2.24
167 168 6.795144 TTTATGATCGTGACCCCTAACTAA 57.205 37.500 0.00 0.00 0.00 2.24
168 169 6.989155 TTATGATCGTGACCCCTAACTAAT 57.011 37.500 0.00 0.00 0.00 1.73
169 170 4.665833 TGATCGTGACCCCTAACTAATG 57.334 45.455 0.00 0.00 0.00 1.90
170 171 4.028131 TGATCGTGACCCCTAACTAATGT 58.972 43.478 0.00 0.00 0.00 2.71
171 172 4.468510 TGATCGTGACCCCTAACTAATGTT 59.531 41.667 0.00 0.00 39.98 2.71
172 173 4.895668 TCGTGACCCCTAACTAATGTTT 57.104 40.909 0.00 0.00 37.59 2.83
173 174 5.231702 TCGTGACCCCTAACTAATGTTTT 57.768 39.130 0.00 0.00 37.59 2.43
174 175 6.357579 TCGTGACCCCTAACTAATGTTTTA 57.642 37.500 0.00 0.00 37.59 1.52
175 176 6.949715 TCGTGACCCCTAACTAATGTTTTAT 58.050 36.000 0.00 0.00 37.59 1.40
176 177 6.819649 TCGTGACCCCTAACTAATGTTTTATG 59.180 38.462 0.00 0.00 37.59 1.90
177 178 6.596497 CGTGACCCCTAACTAATGTTTTATGT 59.404 38.462 0.00 0.00 37.59 2.29
178 179 7.120138 CGTGACCCCTAACTAATGTTTTATGTT 59.880 37.037 0.00 0.00 37.59 2.71
179 180 8.799367 GTGACCCCTAACTAATGTTTTATGTTT 58.201 33.333 0.00 0.00 37.59 2.83
180 181 9.369672 TGACCCCTAACTAATGTTTTATGTTTT 57.630 29.630 0.00 0.00 37.59 2.43
231 232 9.804758 TTGGTCATTTTATTTACGTTTTTCTGT 57.195 25.926 0.00 0.00 0.00 3.41
232 233 9.804758 TGGTCATTTTATTTACGTTTTTCTGTT 57.195 25.926 0.00 0.00 0.00 3.16
262 263 3.056458 TCCAACGCGGACATGACT 58.944 55.556 12.47 0.00 39.64 3.41
263 264 1.369692 TCCAACGCGGACATGACTT 59.630 52.632 12.47 0.00 39.64 3.01
264 265 0.948623 TCCAACGCGGACATGACTTG 60.949 55.000 12.47 2.61 39.64 3.16
265 266 1.497278 CAACGCGGACATGACTTGG 59.503 57.895 12.47 0.00 0.00 3.61
266 267 1.671054 AACGCGGACATGACTTGGG 60.671 57.895 12.47 1.67 0.00 4.12
267 268 2.819595 CGCGGACATGACTTGGGG 60.820 66.667 0.00 0.00 0.00 4.96
268 269 2.351276 GCGGACATGACTTGGGGT 59.649 61.111 0.00 0.00 0.00 4.95
269 270 2.040544 GCGGACATGACTTGGGGTG 61.041 63.158 0.00 0.00 0.00 4.61
270 271 2.040544 CGGACATGACTTGGGGTGC 61.041 63.158 0.00 0.00 0.00 5.01
271 272 2.040544 GGACATGACTTGGGGTGCG 61.041 63.158 0.00 0.00 0.00 5.34
272 273 2.034066 ACATGACTTGGGGTGCGG 59.966 61.111 0.00 0.00 0.00 5.69
273 274 3.443045 CATGACTTGGGGTGCGGC 61.443 66.667 0.00 0.00 0.00 6.53
274 275 4.740822 ATGACTTGGGGTGCGGCC 62.741 66.667 0.00 0.00 0.00 6.13
296 297 3.788766 GGTGGACGCACGCATGAC 61.789 66.667 0.00 0.00 0.00 3.06
297 298 3.788766 GTGGACGCACGCATGACC 61.789 66.667 0.00 0.00 0.00 4.02
300 301 3.047280 GACGCACGCATGACCCAA 61.047 61.111 0.00 0.00 0.00 4.12
301 302 3.308878 GACGCACGCATGACCCAAC 62.309 63.158 0.00 0.00 0.00 3.77
302 303 4.444024 CGCACGCATGACCCAACG 62.444 66.667 0.00 0.00 0.00 4.10
303 304 4.101790 GCACGCATGACCCAACGG 62.102 66.667 0.00 0.00 0.00 4.44
304 305 2.358125 CACGCATGACCCAACGGA 60.358 61.111 0.00 0.00 0.00 4.69
305 306 2.358247 ACGCATGACCCAACGGAC 60.358 61.111 0.00 0.00 0.00 4.79
306 307 2.358125 CGCATGACCCAACGGACA 60.358 61.111 0.00 0.00 38.22 4.02
307 308 1.963855 CGCATGACCCAACGGACAA 60.964 57.895 0.00 0.00 37.37 3.18
308 309 1.875963 GCATGACCCAACGGACAAG 59.124 57.895 0.00 0.00 37.37 3.16
309 310 0.605319 GCATGACCCAACGGACAAGA 60.605 55.000 0.00 0.00 37.37 3.02
310 311 1.442769 CATGACCCAACGGACAAGAG 58.557 55.000 0.00 0.00 37.37 2.85
311 312 0.321653 ATGACCCAACGGACAAGAGC 60.322 55.000 0.00 0.00 37.37 4.09
312 313 2.027625 GACCCAACGGACAAGAGCG 61.028 63.158 0.00 0.00 0.00 5.03
313 314 2.742372 CCCAACGGACAAGAGCGG 60.742 66.667 0.00 0.00 0.00 5.52
314 315 2.342279 CCAACGGACAAGAGCGGA 59.658 61.111 0.00 0.00 0.00 5.54
315 316 2.027625 CCAACGGACAAGAGCGGAC 61.028 63.158 0.00 0.00 0.00 4.79
316 317 1.300620 CAACGGACAAGAGCGGACA 60.301 57.895 0.00 0.00 0.00 4.02
317 318 0.670546 CAACGGACAAGAGCGGACAT 60.671 55.000 0.00 0.00 0.00 3.06
318 319 0.670546 AACGGACAAGAGCGGACATG 60.671 55.000 0.00 0.00 0.00 3.21
319 320 1.811266 CGGACAAGAGCGGACATGG 60.811 63.158 0.00 0.00 0.00 3.66
320 321 1.450312 GGACAAGAGCGGACATGGG 60.450 63.158 0.00 0.00 0.00 4.00
321 322 2.045926 ACAAGAGCGGACATGGGC 60.046 61.111 0.00 0.00 0.00 5.36
322 323 3.197790 CAAGAGCGGACATGGGCG 61.198 66.667 0.00 0.00 0.00 6.13
323 324 3.390521 AAGAGCGGACATGGGCGA 61.391 61.111 0.00 0.00 0.00 5.54
324 325 2.954684 AAGAGCGGACATGGGCGAA 61.955 57.895 0.00 0.00 0.00 4.70
325 326 3.195698 GAGCGGACATGGGCGAAC 61.196 66.667 0.00 0.00 0.00 3.95
326 327 4.778143 AGCGGACATGGGCGAACC 62.778 66.667 0.00 0.00 40.81 3.62
340 341 4.629958 AACCCATTGCCGCCCCAA 62.630 61.111 0.00 0.00 0.00 4.12
341 342 4.629958 ACCCATTGCCGCCCCAAA 62.630 61.111 0.00 0.00 0.00 3.28
342 343 3.773404 CCCATTGCCGCCCCAAAG 61.773 66.667 0.00 0.00 0.00 2.77
343 344 3.773404 CCATTGCCGCCCCAAAGG 61.773 66.667 0.00 0.00 39.47 3.11
356 357 2.078849 CCAAAGGGACAAAATTCGGC 57.921 50.000 0.00 0.00 35.59 5.54
357 358 1.618343 CCAAAGGGACAAAATTCGGCT 59.382 47.619 0.00 0.00 35.59 5.52
358 359 2.823154 CCAAAGGGACAAAATTCGGCTA 59.177 45.455 0.00 0.00 35.59 3.93
359 360 3.257127 CCAAAGGGACAAAATTCGGCTAA 59.743 43.478 0.00 0.00 35.59 3.09
360 361 4.262249 CCAAAGGGACAAAATTCGGCTAAA 60.262 41.667 0.00 0.00 35.59 1.85
361 362 4.514781 AAGGGACAAAATTCGGCTAAAC 57.485 40.909 0.00 0.00 0.00 2.01
362 363 2.823747 AGGGACAAAATTCGGCTAAACC 59.176 45.455 0.00 0.00 0.00 3.27
383 384 3.708734 CGTCCGTTTGGGTCGTGC 61.709 66.667 0.00 0.00 41.57 5.34
384 385 3.708734 GTCCGTTTGGGTCGTGCG 61.709 66.667 0.00 0.00 37.00 5.34
385 386 4.973055 TCCGTTTGGGTCGTGCGG 62.973 66.667 0.00 0.00 43.32 5.69
387 388 4.007940 CGTTTGGGTCGTGCGGTG 62.008 66.667 0.00 0.00 0.00 4.94
388 389 3.656045 GTTTGGGTCGTGCGGTGG 61.656 66.667 0.00 0.00 0.00 4.61
389 390 3.862991 TTTGGGTCGTGCGGTGGA 61.863 61.111 0.00 0.00 0.00 4.02
390 391 3.818121 TTTGGGTCGTGCGGTGGAG 62.818 63.158 0.00 0.00 0.00 3.86
392 393 4.309950 GGGTCGTGCGGTGGAGTT 62.310 66.667 0.00 0.00 0.00 3.01
393 394 3.041940 GGTCGTGCGGTGGAGTTG 61.042 66.667 0.00 0.00 0.00 3.16
394 395 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
395 396 4.980805 TCGTGCGGTGGAGTTGGC 62.981 66.667 0.00 0.00 0.00 4.52
401 402 3.590824 GGTGGAGTTGGCCGAATG 58.409 61.111 0.00 0.00 0.00 2.67
402 403 2.046285 GGTGGAGTTGGCCGAATGG 61.046 63.158 0.00 0.00 38.77 3.16
403 404 1.303317 GTGGAGTTGGCCGAATGGT 60.303 57.895 0.00 0.00 37.67 3.55
404 405 0.893727 GTGGAGTTGGCCGAATGGTT 60.894 55.000 0.00 0.00 37.67 3.67
405 406 0.893270 TGGAGTTGGCCGAATGGTTG 60.893 55.000 0.00 0.00 37.67 3.77
406 407 0.893727 GGAGTTGGCCGAATGGTTGT 60.894 55.000 0.00 0.00 37.67 3.32
407 408 0.240945 GAGTTGGCCGAATGGTTGTG 59.759 55.000 0.00 0.00 37.67 3.33
408 409 1.178534 AGTTGGCCGAATGGTTGTGG 61.179 55.000 0.00 0.00 37.67 4.17
409 410 1.152652 TTGGCCGAATGGTTGTGGT 60.153 52.632 0.00 0.00 37.67 4.16
410 411 0.757188 TTGGCCGAATGGTTGTGGTT 60.757 50.000 0.00 0.00 37.67 3.67
411 412 1.288752 GGCCGAATGGTTGTGGTTG 59.711 57.895 0.00 0.00 37.67 3.77
412 413 1.175983 GGCCGAATGGTTGTGGTTGA 61.176 55.000 0.00 0.00 37.67 3.18
413 414 0.887933 GCCGAATGGTTGTGGTTGAT 59.112 50.000 0.00 0.00 37.67 2.57
414 415 1.272212 GCCGAATGGTTGTGGTTGATT 59.728 47.619 0.00 0.00 37.67 2.57
415 416 2.490115 GCCGAATGGTTGTGGTTGATTA 59.510 45.455 0.00 0.00 37.67 1.75
416 417 3.057174 GCCGAATGGTTGTGGTTGATTAA 60.057 43.478 0.00 0.00 37.67 1.40
417 418 4.381505 GCCGAATGGTTGTGGTTGATTAAT 60.382 41.667 0.00 0.00 37.67 1.40
418 419 5.101628 CCGAATGGTTGTGGTTGATTAATG 58.898 41.667 0.00 0.00 0.00 1.90
419 420 5.105957 CCGAATGGTTGTGGTTGATTAATGA 60.106 40.000 0.00 0.00 0.00 2.57
420 421 6.385843 CGAATGGTTGTGGTTGATTAATGAA 58.614 36.000 0.00 0.00 0.00 2.57
421 422 6.865726 CGAATGGTTGTGGTTGATTAATGAAA 59.134 34.615 0.00 0.00 0.00 2.69
422 423 7.062138 CGAATGGTTGTGGTTGATTAATGAAAG 59.938 37.037 0.00 0.00 0.00 2.62
423 424 6.723298 TGGTTGTGGTTGATTAATGAAAGT 57.277 33.333 0.00 0.00 0.00 2.66
424 425 7.118496 TGGTTGTGGTTGATTAATGAAAGTT 57.882 32.000 0.00 0.00 0.00 2.66
425 426 7.560368 TGGTTGTGGTTGATTAATGAAAGTTT 58.440 30.769 0.00 0.00 0.00 2.66
426 427 8.043710 TGGTTGTGGTTGATTAATGAAAGTTTT 58.956 29.630 0.00 0.00 0.00 2.43
427 428 8.334632 GGTTGTGGTTGATTAATGAAAGTTTTG 58.665 33.333 0.00 0.00 0.00 2.44
428 429 7.475771 TGTGGTTGATTAATGAAAGTTTTGC 57.524 32.000 0.00 0.00 0.00 3.68
429 430 7.271511 TGTGGTTGATTAATGAAAGTTTTGCT 58.728 30.769 0.00 0.00 0.00 3.91
430 431 7.768120 TGTGGTTGATTAATGAAAGTTTTGCTT 59.232 29.630 0.00 0.00 39.52 3.91
432 433 9.171877 TGGTTGATTAATGAAAGTTTTGCTTTT 57.828 25.926 0.00 0.00 46.54 2.27
433 434 9.437045 GGTTGATTAATGAAAGTTTTGCTTTTG 57.563 29.630 0.00 0.00 46.54 2.44
476 477 8.972458 TCATATATCGGACCAATTTTCAGAAA 57.028 30.769 0.00 0.00 0.00 2.52
477 478 9.402320 TCATATATCGGACCAATTTTCAGAAAA 57.598 29.630 10.80 10.80 34.41 2.29
521 522 6.545504 TTTTTCTCGAAGAATCCTGTTCAG 57.454 37.500 0.00 0.00 33.67 3.02
522 523 4.873746 TTCTCGAAGAATCCTGTTCAGT 57.126 40.909 0.00 0.00 34.09 3.41
523 524 4.873746 TCTCGAAGAATCCTGTTCAGTT 57.126 40.909 0.00 0.00 34.09 3.16
524 525 5.215252 TCTCGAAGAATCCTGTTCAGTTT 57.785 39.130 0.00 0.00 34.09 2.66
525 526 6.340962 TCTCGAAGAATCCTGTTCAGTTTA 57.659 37.500 0.00 0.00 34.09 2.01
526 527 6.755206 TCTCGAAGAATCCTGTTCAGTTTAA 58.245 36.000 0.00 0.00 34.09 1.52
527 528 7.214381 TCTCGAAGAATCCTGTTCAGTTTAAA 58.786 34.615 0.00 0.00 34.09 1.52
528 529 7.385205 TCTCGAAGAATCCTGTTCAGTTTAAAG 59.615 37.037 0.00 0.00 34.09 1.85
529 530 7.214381 TCGAAGAATCCTGTTCAGTTTAAAGA 58.786 34.615 0.00 0.00 0.00 2.52
530 531 7.385205 TCGAAGAATCCTGTTCAGTTTAAAGAG 59.615 37.037 0.00 0.00 0.00 2.85
531 532 7.360438 CGAAGAATCCTGTTCAGTTTAAAGAGG 60.360 40.741 0.00 0.00 38.26 3.69
532 533 6.241645 AGAATCCTGTTCAGTTTAAAGAGGG 58.758 40.000 0.00 0.00 37.67 4.30
533 534 3.751518 TCCTGTTCAGTTTAAAGAGGGC 58.248 45.455 0.00 0.00 37.67 5.19
534 535 2.820197 CCTGTTCAGTTTAAAGAGGGCC 59.180 50.000 0.00 0.00 34.39 5.80
535 536 2.820197 CTGTTCAGTTTAAAGAGGGCCC 59.180 50.000 16.46 16.46 0.00 5.80
536 537 1.810755 GTTCAGTTTAAAGAGGGCCCG 59.189 52.381 18.44 0.00 0.00 6.13
537 538 1.354101 TCAGTTTAAAGAGGGCCCGA 58.646 50.000 18.44 0.00 0.00 5.14
538 539 1.278127 TCAGTTTAAAGAGGGCCCGAG 59.722 52.381 18.44 0.00 0.00 4.63
539 540 1.003233 CAGTTTAAAGAGGGCCCGAGT 59.997 52.381 18.44 5.78 0.00 4.18
540 541 1.703513 AGTTTAAAGAGGGCCCGAGTT 59.296 47.619 18.44 13.99 0.00 3.01
541 542 2.082231 GTTTAAAGAGGGCCCGAGTTC 58.918 52.381 18.44 8.65 0.00 3.01
542 543 0.248289 TTAAAGAGGGCCCGAGTTCG 59.752 55.000 18.44 0.00 39.44 3.95
543 544 0.901580 TAAAGAGGGCCCGAGTTCGT 60.902 55.000 18.44 3.34 37.74 3.85
544 545 1.765597 AAAGAGGGCCCGAGTTCGTT 61.766 55.000 18.44 10.24 37.74 3.85
545 546 2.125633 GAGGGCCCGAGTTCGTTC 60.126 66.667 18.44 1.01 37.74 3.95
546 547 3.984200 GAGGGCCCGAGTTCGTTCG 62.984 68.421 18.44 0.93 40.18 3.95
552 553 3.467119 CGAGTTCGTTCGGCGTGG 61.467 66.667 6.85 0.00 42.13 4.94
553 554 3.774702 GAGTTCGTTCGGCGTGGC 61.775 66.667 6.85 0.00 42.13 5.01
554 555 4.295119 AGTTCGTTCGGCGTGGCT 62.295 61.111 6.85 0.00 42.13 4.75
555 556 3.774702 GTTCGTTCGGCGTGGCTC 61.775 66.667 6.85 0.00 42.13 4.70
556 557 4.287781 TTCGTTCGGCGTGGCTCA 62.288 61.111 6.85 0.00 42.13 4.26
559 560 3.414700 GTTCGGCGTGGCTCACTG 61.415 66.667 6.85 0.23 31.34 3.66
560 561 4.680237 TTCGGCGTGGCTCACTGG 62.680 66.667 6.85 0.00 31.34 4.00
569 570 4.459089 GCTCACTGGCCGGTCCTC 62.459 72.222 16.42 2.23 35.26 3.71
686 689 3.435186 GCTTTCTGCCTCGGTGCC 61.435 66.667 0.00 0.00 35.15 5.01
755 758 0.677098 TCTCTGACGAAGACCCCGAG 60.677 60.000 0.00 0.00 0.00 4.63
756 759 2.182030 CTGACGAAGACCCCGAGC 59.818 66.667 0.00 0.00 0.00 5.03
757 760 3.685214 CTGACGAAGACCCCGAGCG 62.685 68.421 0.00 0.00 0.00 5.03
760 763 4.514577 CGAAGACCCCGAGCGCAT 62.515 66.667 11.47 0.00 0.00 4.73
761 764 2.586357 GAAGACCCCGAGCGCATC 60.586 66.667 11.47 3.18 0.00 3.91
762 765 4.162690 AAGACCCCGAGCGCATCC 62.163 66.667 11.47 0.00 0.00 3.51
766 769 4.609018 CCCCGAGCGCATCCGAAT 62.609 66.667 11.47 0.00 36.29 3.34
767 770 2.588877 CCCGAGCGCATCCGAATT 60.589 61.111 11.47 0.00 36.29 2.17
768 771 1.300620 CCCGAGCGCATCCGAATTA 60.301 57.895 11.47 0.00 36.29 1.40
769 772 1.557443 CCCGAGCGCATCCGAATTAC 61.557 60.000 11.47 0.00 36.29 1.89
770 773 1.557443 CCGAGCGCATCCGAATTACC 61.557 60.000 11.47 0.00 36.29 2.85
771 774 1.557443 CGAGCGCATCCGAATTACCC 61.557 60.000 11.47 0.00 36.29 3.69
772 775 1.557443 GAGCGCATCCGAATTACCCG 61.557 60.000 11.47 0.00 36.29 5.28
773 776 1.593209 GCGCATCCGAATTACCCGA 60.593 57.895 0.30 0.00 36.29 5.14
774 777 1.155424 GCGCATCCGAATTACCCGAA 61.155 55.000 0.30 0.00 36.29 4.30
775 778 0.859232 CGCATCCGAATTACCCGAAG 59.141 55.000 0.00 0.00 36.29 3.79
776 779 1.805120 CGCATCCGAATTACCCGAAGT 60.805 52.381 0.00 0.00 36.29 3.01
777 780 1.865340 GCATCCGAATTACCCGAAGTC 59.135 52.381 0.00 0.00 0.00 3.01
778 781 2.740580 GCATCCGAATTACCCGAAGTCA 60.741 50.000 0.00 0.00 31.40 3.41
781 784 2.299582 TCCGAATTACCCGAAGTCACAA 59.700 45.455 0.00 0.00 31.40 3.33
797 800 1.459592 CACAACCGATTCAACCGAGAC 59.540 52.381 0.00 0.00 0.00 3.36
805 808 1.210870 TTCAACCGAGACCGAAAACG 58.789 50.000 0.00 0.00 38.22 3.60
811 814 2.356673 AGACCGAAAACGGACGCC 60.357 61.111 15.45 2.22 0.00 5.68
812 815 3.417224 GACCGAAAACGGACGCCC 61.417 66.667 15.45 0.00 0.00 6.13
813 816 4.238654 ACCGAAAACGGACGCCCA 62.239 61.111 15.45 0.00 0.00 5.36
814 817 3.419759 CCGAAAACGGACGCCCAG 61.420 66.667 2.30 0.00 0.00 4.45
815 818 4.084888 CGAAAACGGACGCCCAGC 62.085 66.667 0.00 0.00 0.00 4.85
816 819 3.733960 GAAAACGGACGCCCAGCC 61.734 66.667 0.00 0.00 0.00 4.85
864 867 0.107897 ATATTTCAGACACCGCGCCA 60.108 50.000 0.00 0.00 0.00 5.69
907 910 1.627550 GAGCGAGCCGACACCTTTTC 61.628 60.000 0.00 0.00 0.00 2.29
1322 1325 0.256752 TGCTGGATGTTCCCATCTGG 59.743 55.000 3.01 0.00 45.66 3.86
1342 1346 3.726595 TAAACGGGCGGATGGCGAG 62.727 63.158 0.00 0.00 44.92 5.03
1388 1393 1.390463 CTCGCTTGCTTCGGTTTAGTC 59.610 52.381 0.00 0.00 0.00 2.59
1396 1401 2.791501 TTCGGTTTAGTCAGGGCCGC 62.792 60.000 0.00 0.00 41.89 6.53
1548 1553 4.537135 ACTGAATCTGCTTCTCCGTTTA 57.463 40.909 0.00 0.00 34.75 2.01
1611 1616 1.535204 CCACCAATGCACCCAGGAAC 61.535 60.000 0.00 0.00 0.00 3.62
1790 1797 1.215382 CGAATCCTGTCGGCTGTCA 59.785 57.895 0.00 0.00 37.37 3.58
1808 1815 0.671796 CACGCCCGTATGGAGTATCA 59.328 55.000 1.27 0.00 46.55 2.15
1811 1818 2.367567 ACGCCCGTATGGAGTATCAATT 59.632 45.455 1.27 0.00 46.40 2.32
1813 1820 4.174009 CGCCCGTATGGAGTATCAATTAG 58.826 47.826 1.27 0.00 37.49 1.73
1814 1821 3.933332 GCCCGTATGGAGTATCAATTAGC 59.067 47.826 1.27 0.00 37.49 3.09
1859 1866 0.463833 CTGATTTGTAGGCCCGGGAC 60.464 60.000 29.31 26.25 0.00 4.46
1873 1880 0.251916 CGGGACAGGCTACAATTGGA 59.748 55.000 10.83 0.00 0.00 3.53
1942 1961 5.507817 GCATCTAGTCTGTGGAGAATGAGAG 60.508 48.000 0.00 0.00 0.00 3.20
1998 2017 2.550180 GCGGAAGAGAATATGAAAGCCC 59.450 50.000 0.00 0.00 0.00 5.19
2022 2041 6.092092 CCACGCACTATCATTTCAAATTTCA 58.908 36.000 0.00 0.00 0.00 2.69
2100 2119 8.696410 TGAGAAAAGATTTTTGGTTGTGTTAC 57.304 30.769 0.00 0.00 0.00 2.50
2101 2120 7.486551 TGAGAAAAGATTTTTGGTTGTGTTACG 59.513 33.333 0.00 0.00 0.00 3.18
2102 2121 7.540299 AGAAAAGATTTTTGGTTGTGTTACGA 58.460 30.769 0.00 0.00 0.00 3.43
2103 2122 8.194769 AGAAAAGATTTTTGGTTGTGTTACGAT 58.805 29.630 0.00 0.00 0.00 3.73
2104 2123 8.710835 AAAAGATTTTTGGTTGTGTTACGATT 57.289 26.923 0.00 0.00 0.00 3.34
2105 2124 8.710835 AAAGATTTTTGGTTGTGTTACGATTT 57.289 26.923 0.00 0.00 0.00 2.17
2106 2125 9.804758 AAAGATTTTTGGTTGTGTTACGATTTA 57.195 25.926 0.00 0.00 0.00 1.40
2107 2126 8.791355 AGATTTTTGGTTGTGTTACGATTTAC 57.209 30.769 0.00 0.00 0.00 2.01
2179 2198 1.524848 TCGGCGCTTGTAATTTTCCA 58.475 45.000 7.64 0.00 0.00 3.53
2187 2206 6.142817 GCGCTTGTAATTTTCCATGGTATAG 58.857 40.000 12.58 0.19 0.00 1.31
2241 2260 8.546597 AATATTTGCATTTAGTTGTTCCAACC 57.453 30.769 3.61 0.00 0.00 3.77
2396 2417 1.032014 TGTCCAAAGCTGTTCTTGCC 58.968 50.000 0.00 0.00 34.67 4.52
2503 2524 5.910637 GTGTGATTTTTACACCTGACGTA 57.089 39.130 0.00 0.00 41.90 3.57
2504 2525 6.476243 GTGTGATTTTTACACCTGACGTAT 57.524 37.500 0.00 0.00 41.90 3.06
2587 2608 4.202503 ACACTTGGGAGTTCAGATGTGATT 60.203 41.667 0.00 0.00 32.54 2.57
2645 2667 7.387948 AGCTGATATTTCTTTTACACTCGTGTT 59.612 33.333 8.11 0.00 41.83 3.32
2705 2731 4.733887 GTGTCGTGAACTATAGTTGATCCG 59.266 45.833 22.68 14.48 38.56 4.18
2713 2739 6.154877 TGAACTATAGTTGATCCGGTAACCAA 59.845 38.462 22.68 0.00 38.56 3.67
2714 2740 6.158023 ACTATAGTTGATCCGGTAACCAAG 57.842 41.667 0.00 6.38 0.00 3.61
2730 2756 5.819825 AACCAAGTTGAGAAAGTTGACTC 57.180 39.130 3.87 0.00 35.62 3.36
2807 2833 3.201266 ACAAGTTAAGTTCCAGGACACCA 59.799 43.478 0.00 0.00 0.00 4.17
2826 2852 6.753180 ACACCATCTTACTGATATGCTACAG 58.247 40.000 0.00 0.00 39.65 2.74
2920 2946 5.273208 ACTCTTAACTCTCAGCCTCCATTA 58.727 41.667 0.00 0.00 0.00 1.90
2937 2963 9.174166 GCCTCCATTAAATCTAAAAGTGTAGAA 57.826 33.333 0.00 0.00 33.86 2.10
3054 3080 4.557205 GCGGTATTCTTGGTAGTATCCTG 58.443 47.826 0.00 0.00 0.00 3.86
3062 3088 1.123928 GGTAGTATCCTGTGCCTGCT 58.876 55.000 0.00 0.00 0.00 4.24
3136 3162 8.559536 TGAAAGTTGAGAGTTGAAATATGTGAC 58.440 33.333 0.00 0.00 0.00 3.67
3173 3203 4.726416 AGTTGAATGCTAATTTGCTCACG 58.274 39.130 12.99 0.00 0.00 4.35
3175 3205 4.082274 TGAATGCTAATTTGCTCACGTG 57.918 40.909 9.94 9.94 0.00 4.49
3180 3210 3.058983 TGCTAATTTGCTCACGTGTCTTG 60.059 43.478 16.51 5.90 0.00 3.02
3181 3211 3.667960 GCTAATTTGCTCACGTGTCTTGG 60.668 47.826 16.51 4.82 0.00 3.61
3246 3276 5.700832 TGAAGGAATGGTCGCATAATATCAC 59.299 40.000 0.00 0.00 0.00 3.06
3249 3279 1.790755 TGGTCGCATAATATCACGGC 58.209 50.000 0.00 0.00 0.00 5.68
3289 3319 1.485066 AGAATGGTTGTAGGCGTAGGG 59.515 52.381 0.00 0.00 0.00 3.53
3303 3333 1.540267 CGTAGGGTCCAGACATATCGG 59.460 57.143 0.00 0.00 0.00 4.18
3653 3683 9.104965 GCCAAAACTTAAAACTATTTTTCCAGT 57.895 29.630 0.00 0.00 36.32 4.00
3678 3708 8.338259 GTCATATATTCAGTTGTTCCATCACAC 58.662 37.037 0.00 0.00 0.00 3.82
3724 3756 7.004555 TGTTCCATCACACTCTACTTGTATT 57.995 36.000 0.00 0.00 0.00 1.89
3966 3998 1.032657 TGAGCCGTCCTGAGCTACTC 61.033 60.000 0.00 0.00 40.11 2.59
3993 4025 1.208293 GGAGCTCTGACAGGTAAAGGG 59.792 57.143 14.64 0.00 30.88 3.95
4080 4115 2.552315 TCCACAGAAGCGGAATTTCAAC 59.448 45.455 0.00 0.00 0.00 3.18
4095 4130 1.412079 TCAACTGCTGCCCAAACAAT 58.588 45.000 0.00 0.00 0.00 2.71
4096 4131 1.068895 TCAACTGCTGCCCAAACAATG 59.931 47.619 0.00 0.00 0.00 2.82
4106 4141 2.547855 GCCCAAACAATGACTTGGAACC 60.548 50.000 16.52 5.13 44.16 3.62
4131 4166 3.523564 AGGGTAGTAAACAGGCATCACAT 59.476 43.478 0.00 0.00 0.00 3.21
4216 4253 1.686325 GGAAGCGGCTCATGGTAGGA 61.686 60.000 1.45 0.00 0.00 2.94
4638 4691 2.034558 TGTTTGCTGCTCCTTTGCTAAC 59.965 45.455 0.00 0.00 40.71 2.34
4643 4696 2.783135 CTGCTCCTTTGCTAACTTGGA 58.217 47.619 0.00 0.00 0.00 3.53
4670 4723 2.285083 GGTTGCGCATGGTACTATTCA 58.715 47.619 12.75 0.00 0.00 2.57
4714 4768 2.396590 TACAGATTGAAACGAGGGCC 57.603 50.000 0.00 0.00 0.00 5.80
4721 4775 2.254471 GAAACGAGGGCCTGTTTCC 58.746 57.895 30.65 20.83 45.08 3.13
4725 4779 3.056328 GAGGGCCTGTTTCCGTGC 61.056 66.667 12.95 0.00 0.00 5.34
4746 4800 3.249091 CGCTCCATTTCTCCTATCATCG 58.751 50.000 0.00 0.00 0.00 3.84
4768 4822 3.858238 GTCGTCAGTATTCTGCCTTGTAC 59.142 47.826 0.00 0.00 41.10 2.90
4769 4823 3.508402 TCGTCAGTATTCTGCCTTGTACA 59.492 43.478 0.00 0.00 41.10 2.90
4793 4847 1.346395 TGGTGTGAGCCGTCAGTATTT 59.654 47.619 0.00 0.00 31.53 1.40
4806 4862 7.069085 AGCCGTCAGTATTTCTACCTTGTATTA 59.931 37.037 0.00 0.00 0.00 0.98
4850 4911 2.135933 CCTAATGCGTAGGTGCTTAGC 58.864 52.381 0.00 0.00 44.17 3.09
4868 4929 2.704572 AGCTCAGATTGTGGTGCTAAC 58.295 47.619 0.00 0.00 35.54 2.34
4871 4932 3.668447 CTCAGATTGTGGTGCTAACTGT 58.332 45.455 0.00 0.00 0.00 3.55
4914 4975 4.962155 ACTAAACTATCCACTGCATAGGC 58.038 43.478 0.00 0.00 41.68 3.93
4917 4978 0.319728 CTATCCACTGCATAGGCGCT 59.680 55.000 7.64 0.00 45.35 5.92
4918 4979 0.758734 TATCCACTGCATAGGCGCTT 59.241 50.000 7.64 0.52 45.35 4.68
4919 4980 0.758734 ATCCACTGCATAGGCGCTTA 59.241 50.000 7.64 3.82 45.35 3.09
4920 4981 0.179084 TCCACTGCATAGGCGCTTAC 60.179 55.000 7.64 0.00 45.35 2.34
4921 4982 1.490693 CCACTGCATAGGCGCTTACG 61.491 60.000 7.64 0.00 45.35 3.18
4935 4996 3.441163 CGCTTACGCTGTAAACTATCCA 58.559 45.455 3.44 0.00 0.00 3.41
4936 4997 3.242248 CGCTTACGCTGTAAACTATCCAC 59.758 47.826 3.44 0.00 0.00 4.02
4937 4998 4.430908 GCTTACGCTGTAAACTATCCACT 58.569 43.478 3.44 0.00 0.00 4.00
4938 4999 4.267928 GCTTACGCTGTAAACTATCCACTG 59.732 45.833 3.44 0.00 0.00 3.66
4939 5000 3.955650 ACGCTGTAAACTATCCACTGT 57.044 42.857 0.00 0.00 0.00 3.55
4940 5001 6.513806 TTACGCTGTAAACTATCCACTGTA 57.486 37.500 0.00 0.00 0.00 2.74
4941 5002 4.995124 ACGCTGTAAACTATCCACTGTAG 58.005 43.478 0.00 0.00 0.00 2.74
4947 5008 7.014422 GCTGTAAACTATCCACTGTAGATAGGT 59.986 40.741 21.67 15.55 44.37 3.08
4949 5010 7.837689 TGTAAACTATCCACTGTAGATAGGTGT 59.162 37.037 21.67 11.94 42.20 4.16
4957 5018 7.782049 TCCACTGTAGATAGGTGTTTATCTTG 58.218 38.462 1.33 0.00 40.14 3.02
5001 5063 6.134061 GTCGACTGTAAATTGTGTTTTCCTC 58.866 40.000 8.70 0.00 0.00 3.71
5006 5068 7.287810 ACTGTAAATTGTGTTTTCCTCTAGGT 58.712 34.615 0.00 0.00 36.34 3.08
5007 5069 8.434392 ACTGTAAATTGTGTTTTCCTCTAGGTA 58.566 33.333 0.00 0.00 36.34 3.08
5008 5070 8.611654 TGTAAATTGTGTTTTCCTCTAGGTAC 57.388 34.615 0.00 0.00 36.34 3.34
5009 5071 8.212312 TGTAAATTGTGTTTTCCTCTAGGTACA 58.788 33.333 0.00 0.00 36.34 2.90
5010 5072 7.506328 AAATTGTGTTTTCCTCTAGGTACAC 57.494 36.000 17.22 17.22 40.21 2.90
5011 5073 5.881923 TTGTGTTTTCCTCTAGGTACACT 57.118 39.130 21.09 0.00 40.32 3.55
5012 5074 5.464030 TGTGTTTTCCTCTAGGTACACTC 57.536 43.478 21.09 8.93 40.32 3.51
5013 5075 5.145564 TGTGTTTTCCTCTAGGTACACTCT 58.854 41.667 21.09 0.00 40.32 3.24
5014 5076 5.243283 TGTGTTTTCCTCTAGGTACACTCTC 59.757 44.000 21.09 6.67 40.32 3.20
5015 5077 4.771054 TGTTTTCCTCTAGGTACACTCTCC 59.229 45.833 0.00 0.00 36.34 3.71
5016 5078 4.949966 TTTCCTCTAGGTACACTCTCCT 57.050 45.455 0.00 0.00 37.80 3.69
5017 5079 6.186234 GTTTTCCTCTAGGTACACTCTCCTA 58.814 44.000 0.00 0.00 35.51 2.94
5026 5088 8.927675 CTAGGTACACTCTCCTAGTATCATTT 57.072 38.462 9.33 0.00 44.71 2.32
5027 5089 7.826918 AGGTACACTCTCCTAGTATCATTTC 57.173 40.000 0.00 0.00 35.76 2.17
5028 5090 7.588169 AGGTACACTCTCCTAGTATCATTTCT 58.412 38.462 0.00 0.00 35.76 2.52
5029 5091 8.062536 AGGTACACTCTCCTAGTATCATTTCTT 58.937 37.037 0.00 0.00 35.76 2.52
5030 5092 8.354426 GGTACACTCTCCTAGTATCATTTCTTC 58.646 40.741 0.00 0.00 35.76 2.87
5031 5093 7.354751 ACACTCTCCTAGTATCATTTCTTCC 57.645 40.000 0.00 0.00 35.76 3.46
5032 5094 7.129425 ACACTCTCCTAGTATCATTTCTTCCT 58.871 38.462 0.00 0.00 35.76 3.36
5033 5095 7.621683 ACACTCTCCTAGTATCATTTCTTCCTT 59.378 37.037 0.00 0.00 35.76 3.36
5034 5096 7.925483 CACTCTCCTAGTATCATTTCTTCCTTG 59.075 40.741 0.00 0.00 35.76 3.61
5035 5097 7.070571 ACTCTCCTAGTATCATTTCTTCCTTGG 59.929 40.741 0.00 0.00 36.36 3.61
5036 5098 6.903534 TCTCCTAGTATCATTTCTTCCTTGGT 59.096 38.462 0.00 0.00 0.00 3.67
5037 5099 7.070074 TCTCCTAGTATCATTTCTTCCTTGGTC 59.930 40.741 0.00 0.00 0.00 4.02
5038 5100 6.672218 TCCTAGTATCATTTCTTCCTTGGTCA 59.328 38.462 0.00 0.00 0.00 4.02
5039 5101 7.348274 TCCTAGTATCATTTCTTCCTTGGTCAT 59.652 37.037 0.00 0.00 0.00 3.06
5040 5102 7.659390 CCTAGTATCATTTCTTCCTTGGTCATC 59.341 40.741 0.00 0.00 0.00 2.92
5041 5103 6.962182 AGTATCATTTCTTCCTTGGTCATCA 58.038 36.000 0.00 0.00 0.00 3.07
5042 5104 7.405292 AGTATCATTTCTTCCTTGGTCATCAA 58.595 34.615 0.00 0.00 0.00 2.57
5043 5105 7.890127 AGTATCATTTCTTCCTTGGTCATCAAA 59.110 33.333 0.00 0.00 34.56 2.69
5044 5106 6.331369 TCATTTCTTCCTTGGTCATCAAAC 57.669 37.500 0.00 0.00 34.56 2.93
5045 5107 6.070656 TCATTTCTTCCTTGGTCATCAAACT 58.929 36.000 0.00 0.00 34.56 2.66
5046 5108 6.550854 TCATTTCTTCCTTGGTCATCAAACTT 59.449 34.615 0.00 0.00 34.56 2.66
5047 5109 6.391227 TTTCTTCCTTGGTCATCAAACTTC 57.609 37.500 0.00 0.00 34.56 3.01
5048 5110 5.310409 TCTTCCTTGGTCATCAAACTTCT 57.690 39.130 0.00 0.00 34.56 2.85
5049 5111 5.308825 TCTTCCTTGGTCATCAAACTTCTC 58.691 41.667 0.00 0.00 34.56 2.87
5050 5112 4.982241 TCCTTGGTCATCAAACTTCTCT 57.018 40.909 0.00 0.00 34.56 3.10
5051 5113 4.899502 TCCTTGGTCATCAAACTTCTCTC 58.100 43.478 0.00 0.00 34.56 3.20
5052 5114 4.594920 TCCTTGGTCATCAAACTTCTCTCT 59.405 41.667 0.00 0.00 34.56 3.10
5053 5115 5.072329 TCCTTGGTCATCAAACTTCTCTCTT 59.928 40.000 0.00 0.00 34.56 2.85
5054 5116 5.411053 CCTTGGTCATCAAACTTCTCTCTTC 59.589 44.000 0.00 0.00 34.56 2.87
5055 5117 5.815233 TGGTCATCAAACTTCTCTCTTCT 57.185 39.130 0.00 0.00 0.00 2.85
5056 5118 5.788450 TGGTCATCAAACTTCTCTCTTCTC 58.212 41.667 0.00 0.00 0.00 2.87
5057 5119 5.541868 TGGTCATCAAACTTCTCTCTTCTCT 59.458 40.000 0.00 0.00 0.00 3.10
5058 5120 6.042552 TGGTCATCAAACTTCTCTCTTCTCTT 59.957 38.462 0.00 0.00 0.00 2.85
5059 5121 7.233553 TGGTCATCAAACTTCTCTCTTCTCTTA 59.766 37.037 0.00 0.00 0.00 2.10
5060 5122 8.091449 GGTCATCAAACTTCTCTCTTCTCTTAA 58.909 37.037 0.00 0.00 0.00 1.85
5061 5123 9.651913 GTCATCAAACTTCTCTCTTCTCTTAAT 57.348 33.333 0.00 0.00 0.00 1.40
5065 5127 9.930693 TCAAACTTCTCTCTTCTCTTAATTACC 57.069 33.333 0.00 0.00 0.00 2.85
5066 5128 9.936759 CAAACTTCTCTCTTCTCTTAATTACCT 57.063 33.333 0.00 0.00 0.00 3.08
5124 5186 6.160576 AGTTCACCACAAATACAAAGCATT 57.839 33.333 0.00 0.00 0.00 3.56
5126 5188 6.701400 AGTTCACCACAAATACAAAGCATTTC 59.299 34.615 0.00 0.00 35.03 2.17
5170 5242 4.396166 CACCATTGAAGGACCACTATTGTC 59.604 45.833 0.00 0.00 0.00 3.18
5171 5243 3.623060 CCATTGAAGGACCACTATTGTCG 59.377 47.826 0.00 0.00 33.46 4.35
5175 5247 0.537188 AGGACCACTATTGTCGCCAG 59.463 55.000 0.00 0.00 33.46 4.85
5178 5250 2.000447 GACCACTATTGTCGCCAGAAC 59.000 52.381 0.00 0.00 0.00 3.01
5179 5251 0.999406 CCACTATTGTCGCCAGAACG 59.001 55.000 0.00 0.00 0.00 3.95
5180 5252 1.403647 CCACTATTGTCGCCAGAACGA 60.404 52.381 0.00 0.00 40.36 3.85
5181 5253 1.920574 CACTATTGTCGCCAGAACGAG 59.079 52.381 0.00 0.00 43.89 4.18
5182 5254 0.924090 CTATTGTCGCCAGAACGAGC 59.076 55.000 0.00 0.00 43.89 5.03
5183 5255 0.530744 TATTGTCGCCAGAACGAGCT 59.469 50.000 0.00 0.00 43.89 4.09
5184 5256 1.016130 ATTGTCGCCAGAACGAGCTG 61.016 55.000 0.00 0.00 43.89 4.24
5185 5257 2.049063 GTCGCCAGAACGAGCTGT 60.049 61.111 0.00 0.00 43.89 4.40
5187 5259 1.664649 TCGCCAGAACGAGCTGTTG 60.665 57.895 0.00 0.00 42.09 3.33
5188 5260 1.664649 CGCCAGAACGAGCTGTTGA 60.665 57.895 0.00 0.00 42.09 3.18
5189 5261 1.862806 GCCAGAACGAGCTGTTGAC 59.137 57.895 0.00 0.00 42.09 3.18
5190 5262 1.891060 GCCAGAACGAGCTGTTGACG 61.891 60.000 0.00 0.00 42.09 4.35
5191 5263 0.597637 CCAGAACGAGCTGTTGACGT 60.598 55.000 0.00 0.00 42.09 4.34
5192 5264 0.504384 CAGAACGAGCTGTTGACGTG 59.496 55.000 0.00 0.00 42.09 4.49
5194 5266 2.159272 GAACGAGCTGTTGACGTGCC 62.159 60.000 0.00 0.00 42.09 5.01
5206 5300 1.565156 GACGTGCCGCTTGTCAATGA 61.565 55.000 0.00 0.00 32.91 2.57
5212 5372 0.957395 CCGCTTGTCAATGACAGCCT 60.957 55.000 22.43 0.00 43.69 4.58
5220 5380 3.055819 TGTCAATGACAGCCTAAGGAGAC 60.056 47.826 12.63 0.00 37.67 3.36
5234 5394 1.549170 AGGAGACGGCAAAATCTACGT 59.451 47.619 0.00 0.00 42.88 3.57
5243 5403 3.302699 GGCAAAATCTACGTGTCGACTAC 59.697 47.826 17.92 12.01 0.00 2.73
5256 5416 2.222678 GTCGACTACGTTCAGACAGACA 59.777 50.000 8.70 0.00 40.69 3.41
5262 5422 2.460918 ACGTTCAGACAGACAAACTCG 58.539 47.619 0.00 0.00 0.00 4.18
5268 5428 3.883489 TCAGACAGACAAACTCGAGAAGA 59.117 43.478 21.68 0.00 0.00 2.87
5278 5438 1.028905 CTCGAGAAGAATCGGAGCCT 58.971 55.000 6.58 0.00 42.93 4.58
5289 5449 3.528597 ATCGGAGCCTAGAAGACAAAC 57.471 47.619 0.00 0.00 0.00 2.93
5292 5452 2.732597 CGGAGCCTAGAAGACAAACTCG 60.733 54.545 0.00 0.00 0.00 4.18
5304 5464 2.668280 AAACTCGAAGAAGCGCCGC 61.668 57.895 2.29 0.00 34.09 6.53
5361 5521 2.618053 CTAACCTGAACTGCTAACCGG 58.382 52.381 0.00 0.00 0.00 5.28
5365 5525 1.078759 CTGAACTGCTAACCGGAGCG 61.079 60.000 9.46 6.94 45.99 5.03
5370 5530 2.227089 CTGCTAACCGGAGCGAAGGT 62.227 60.000 9.46 0.00 45.99 3.50
5376 5539 2.494918 CGGAGCGAAGGTACCAGG 59.505 66.667 15.94 3.46 39.88 4.45
5378 5541 1.392710 CGGAGCGAAGGTACCAGGAT 61.393 60.000 15.94 0.34 39.88 3.24
5387 5550 1.461655 GTACCAGGATCCCCCTCCC 60.462 68.421 8.55 0.00 45.60 4.30
5400 5563 4.729918 CTCCCTGCCACCAGCCAC 62.730 72.222 0.00 0.00 42.71 5.01
5407 5570 4.704833 CCACCAGCCACCGGAGTG 62.705 72.222 9.46 5.51 44.12 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.736896 GTGGCCTCCGGTGTCGTC 62.737 72.222 3.32 0.00 33.95 4.20
6 7 4.742201 CAGTGGCCTCCGGTGTCG 62.742 72.222 3.32 0.00 0.00 4.35
7 8 2.788191 CTTCAGTGGCCTCCGGTGTC 62.788 65.000 3.32 0.00 0.00 3.67
8 9 2.847234 TTCAGTGGCCTCCGGTGT 60.847 61.111 3.32 0.00 0.00 4.16
9 10 2.046892 CTTCAGTGGCCTCCGGTG 60.047 66.667 3.32 0.00 0.00 4.94
10 11 2.203788 TCTTCAGTGGCCTCCGGT 60.204 61.111 3.32 0.00 0.00 5.28
11 12 2.266055 GTCTTCAGTGGCCTCCGG 59.734 66.667 3.32 0.00 0.00 5.14
12 13 2.125912 CGTCTTCAGTGGCCTCCG 60.126 66.667 3.32 0.00 0.00 4.63
13 14 2.266055 CCGTCTTCAGTGGCCTCC 59.734 66.667 3.32 0.00 0.00 4.30
14 15 2.435059 GCCGTCTTCAGTGGCCTC 60.435 66.667 3.32 0.00 43.06 4.70
18 19 2.738521 CGTGGCCGTCTTCAGTGG 60.739 66.667 0.00 0.00 0.00 4.00
19 20 2.738521 CCGTGGCCGTCTTCAGTG 60.739 66.667 0.00 0.00 0.00 3.66
20 21 4.681978 GCCGTGGCCGTCTTCAGT 62.682 66.667 0.00 0.00 34.56 3.41
87 88 9.429359 CCAGTGCCATAATTAACATAAAAACAA 57.571 29.630 0.00 0.00 0.00 2.83
88 89 8.037758 CCCAGTGCCATAATTAACATAAAAACA 58.962 33.333 0.00 0.00 0.00 2.83
89 90 7.011016 GCCCAGTGCCATAATTAACATAAAAAC 59.989 37.037 0.00 0.00 0.00 2.43
90 91 7.044798 GCCCAGTGCCATAATTAACATAAAAA 58.955 34.615 0.00 0.00 0.00 1.94
91 92 6.578023 GCCCAGTGCCATAATTAACATAAAA 58.422 36.000 0.00 0.00 0.00 1.52
92 93 6.155475 GCCCAGTGCCATAATTAACATAAA 57.845 37.500 0.00 0.00 0.00 1.40
93 94 5.782893 GCCCAGTGCCATAATTAACATAA 57.217 39.130 0.00 0.00 0.00 1.90
107 108 0.887387 TTCACTTAACGGCCCAGTGC 60.887 55.000 12.23 0.00 38.27 4.40
108 109 0.872388 GTTCACTTAACGGCCCAGTG 59.128 55.000 11.22 11.22 39.51 3.66
109 110 0.763035 AGTTCACTTAACGGCCCAGT 59.237 50.000 0.00 0.00 43.29 4.00
110 111 1.156736 CAGTTCACTTAACGGCCCAG 58.843 55.000 0.00 0.00 43.29 4.45
111 112 0.470766 ACAGTTCACTTAACGGCCCA 59.529 50.000 0.00 0.00 43.29 5.36
112 113 1.601166 AACAGTTCACTTAACGGCCC 58.399 50.000 0.00 0.00 43.29 5.80
113 114 4.274214 AGTTTAACAGTTCACTTAACGGCC 59.726 41.667 0.00 0.00 43.29 6.13
114 115 5.202640 CAGTTTAACAGTTCACTTAACGGC 58.797 41.667 0.00 0.00 43.29 5.68
115 116 5.277634 CCCAGTTTAACAGTTCACTTAACGG 60.278 44.000 0.00 0.00 43.29 4.44
116 117 5.744490 CCCAGTTTAACAGTTCACTTAACG 58.256 41.667 0.00 0.00 43.29 3.18
117 118 5.506815 GGCCCAGTTTAACAGTTCACTTAAC 60.507 44.000 0.00 0.00 38.46 2.01
118 119 4.581409 GGCCCAGTTTAACAGTTCACTTAA 59.419 41.667 0.00 0.00 0.00 1.85
119 120 4.139038 GGCCCAGTTTAACAGTTCACTTA 58.861 43.478 0.00 0.00 0.00 2.24
120 121 2.956333 GGCCCAGTTTAACAGTTCACTT 59.044 45.455 0.00 0.00 0.00 3.16
121 122 2.583143 GGCCCAGTTTAACAGTTCACT 58.417 47.619 0.00 0.00 0.00 3.41
122 123 1.265905 CGGCCCAGTTTAACAGTTCAC 59.734 52.381 0.00 0.00 0.00 3.18
123 124 1.134037 ACGGCCCAGTTTAACAGTTCA 60.134 47.619 0.00 0.00 0.00 3.18
124 125 1.601166 ACGGCCCAGTTTAACAGTTC 58.399 50.000 0.00 0.00 0.00 3.01
125 126 2.061509 AACGGCCCAGTTTAACAGTT 57.938 45.000 0.00 0.00 0.00 3.16
126 127 2.061509 AAACGGCCCAGTTTAACAGT 57.938 45.000 6.95 0.00 41.93 3.55
127 128 4.216687 TCATAAAACGGCCCAGTTTAACAG 59.783 41.667 8.91 1.86 42.81 3.16
128 129 4.142790 TCATAAAACGGCCCAGTTTAACA 58.857 39.130 8.91 0.00 42.81 2.41
129 130 4.769859 TCATAAAACGGCCCAGTTTAAC 57.230 40.909 8.91 0.00 42.81 2.01
130 131 4.095185 CGATCATAAAACGGCCCAGTTTAA 59.905 41.667 8.91 0.00 42.81 1.52
131 132 3.623960 CGATCATAAAACGGCCCAGTTTA 59.376 43.478 8.91 6.01 42.81 2.01
132 133 2.422127 CGATCATAAAACGGCCCAGTTT 59.578 45.455 0.00 0.00 45.21 2.66
133 134 2.014128 CGATCATAAAACGGCCCAGTT 58.986 47.619 0.00 0.00 35.59 3.16
134 135 1.065709 ACGATCATAAAACGGCCCAGT 60.066 47.619 0.00 0.00 0.00 4.00
135 136 1.330521 CACGATCATAAAACGGCCCAG 59.669 52.381 0.00 0.00 0.00 4.45
136 137 1.066071 TCACGATCATAAAACGGCCCA 60.066 47.619 0.00 0.00 0.00 5.36
137 138 1.329599 GTCACGATCATAAAACGGCCC 59.670 52.381 0.00 0.00 0.00 5.80
138 139 1.329599 GGTCACGATCATAAAACGGCC 59.670 52.381 0.00 0.00 0.00 6.13
139 140 1.329599 GGGTCACGATCATAAAACGGC 59.670 52.381 0.00 0.00 0.00 5.68
140 141 1.937899 GGGGTCACGATCATAAAACGG 59.062 52.381 0.00 0.00 0.00 4.44
141 142 2.901249 AGGGGTCACGATCATAAAACG 58.099 47.619 0.00 0.00 0.00 3.60
142 143 5.425630 AGTTAGGGGTCACGATCATAAAAC 58.574 41.667 0.00 0.00 0.00 2.43
143 144 5.687166 AGTTAGGGGTCACGATCATAAAA 57.313 39.130 0.00 0.00 0.00 1.52
144 145 6.795144 TTAGTTAGGGGTCACGATCATAAA 57.205 37.500 0.00 0.00 0.00 1.40
145 146 6.325545 ACATTAGTTAGGGGTCACGATCATAA 59.674 38.462 0.00 0.00 0.00 1.90
146 147 5.836898 ACATTAGTTAGGGGTCACGATCATA 59.163 40.000 0.00 0.00 0.00 2.15
147 148 4.654262 ACATTAGTTAGGGGTCACGATCAT 59.346 41.667 0.00 0.00 0.00 2.45
148 149 4.028131 ACATTAGTTAGGGGTCACGATCA 58.972 43.478 0.00 0.00 0.00 2.92
149 150 4.667519 ACATTAGTTAGGGGTCACGATC 57.332 45.455 0.00 0.00 0.00 3.69
150 151 5.431179 AAACATTAGTTAGGGGTCACGAT 57.569 39.130 0.00 0.00 36.84 3.73
151 152 4.895668 AAACATTAGTTAGGGGTCACGA 57.104 40.909 0.00 0.00 36.84 4.35
152 153 6.596497 ACATAAAACATTAGTTAGGGGTCACG 59.404 38.462 0.00 0.00 36.84 4.35
153 154 7.933215 ACATAAAACATTAGTTAGGGGTCAC 57.067 36.000 0.00 0.00 36.84 3.67
154 155 8.943594 AAACATAAAACATTAGTTAGGGGTCA 57.056 30.769 0.00 0.00 36.84 4.02
205 206 9.804758 ACAGAAAAACGTAAATAAAATGACCAA 57.195 25.926 0.00 0.00 0.00 3.67
206 207 9.804758 AACAGAAAAACGTAAATAAAATGACCA 57.195 25.926 0.00 0.00 0.00 4.02
246 247 1.497278 CAAGTCATGTCCGCGTTGG 59.503 57.895 4.92 0.00 40.09 3.77
247 248 1.497278 CCAAGTCATGTCCGCGTTG 59.503 57.895 4.92 0.00 0.00 4.10
248 249 1.671054 CCCAAGTCATGTCCGCGTT 60.671 57.895 4.92 0.00 0.00 4.84
249 250 2.047274 CCCAAGTCATGTCCGCGT 60.047 61.111 4.92 0.00 0.00 6.01
250 251 2.819595 CCCCAAGTCATGTCCGCG 60.820 66.667 0.00 0.00 0.00 6.46
251 252 2.040544 CACCCCAAGTCATGTCCGC 61.041 63.158 0.00 0.00 0.00 5.54
252 253 2.040544 GCACCCCAAGTCATGTCCG 61.041 63.158 0.00 0.00 0.00 4.79
253 254 2.040544 CGCACCCCAAGTCATGTCC 61.041 63.158 0.00 0.00 0.00 4.02
254 255 2.040544 CCGCACCCCAAGTCATGTC 61.041 63.158 0.00 0.00 0.00 3.06
255 256 2.034066 CCGCACCCCAAGTCATGT 59.966 61.111 0.00 0.00 0.00 3.21
256 257 3.443045 GCCGCACCCCAAGTCATG 61.443 66.667 0.00 0.00 0.00 3.07
257 258 4.740822 GGCCGCACCCCAAGTCAT 62.741 66.667 0.00 0.00 0.00 3.06
279 280 3.788766 GTCATGCGTGCGTCCACC 61.789 66.667 0.00 0.00 38.79 4.61
280 281 3.788766 GGTCATGCGTGCGTCCAC 61.789 66.667 0.00 0.00 38.62 4.02
283 284 3.047280 TTGGGTCATGCGTGCGTC 61.047 61.111 0.00 0.00 0.00 5.19
284 285 3.353836 GTTGGGTCATGCGTGCGT 61.354 61.111 0.00 0.00 0.00 5.24
285 286 4.444024 CGTTGGGTCATGCGTGCG 62.444 66.667 0.00 0.00 0.00 5.34
286 287 4.101790 CCGTTGGGTCATGCGTGC 62.102 66.667 0.00 0.00 0.00 5.34
287 288 2.358125 TCCGTTGGGTCATGCGTG 60.358 61.111 0.00 0.00 33.83 5.34
288 289 2.358247 GTCCGTTGGGTCATGCGT 60.358 61.111 0.00 0.00 33.83 5.24
289 290 1.911293 CTTGTCCGTTGGGTCATGCG 61.911 60.000 0.00 0.00 31.34 4.73
290 291 0.605319 TCTTGTCCGTTGGGTCATGC 60.605 55.000 0.00 0.00 31.34 4.06
291 292 1.442769 CTCTTGTCCGTTGGGTCATG 58.557 55.000 0.00 0.00 31.34 3.07
292 293 0.321653 GCTCTTGTCCGTTGGGTCAT 60.322 55.000 0.00 0.00 31.34 3.06
293 294 1.070786 GCTCTTGTCCGTTGGGTCA 59.929 57.895 0.00 0.00 33.83 4.02
294 295 2.027625 CGCTCTTGTCCGTTGGGTC 61.028 63.158 0.00 0.00 33.83 4.46
295 296 2.030562 CGCTCTTGTCCGTTGGGT 59.969 61.111 0.00 0.00 33.83 4.51
296 297 2.742372 CCGCTCTTGTCCGTTGGG 60.742 66.667 0.00 0.00 0.00 4.12
297 298 2.027625 GTCCGCTCTTGTCCGTTGG 61.028 63.158 0.00 0.00 0.00 3.77
298 299 0.670546 ATGTCCGCTCTTGTCCGTTG 60.671 55.000 0.00 0.00 0.00 4.10
299 300 0.670546 CATGTCCGCTCTTGTCCGTT 60.671 55.000 0.00 0.00 0.00 4.44
300 301 1.079819 CATGTCCGCTCTTGTCCGT 60.080 57.895 0.00 0.00 0.00 4.69
301 302 1.811266 CCATGTCCGCTCTTGTCCG 60.811 63.158 0.00 0.00 0.00 4.79
302 303 1.450312 CCCATGTCCGCTCTTGTCC 60.450 63.158 0.00 0.00 0.00 4.02
303 304 2.109126 GCCCATGTCCGCTCTTGTC 61.109 63.158 0.00 0.00 0.00 3.18
304 305 2.045926 GCCCATGTCCGCTCTTGT 60.046 61.111 0.00 0.00 0.00 3.16
305 306 3.197790 CGCCCATGTCCGCTCTTG 61.198 66.667 0.00 0.00 0.00 3.02
306 307 2.954684 TTCGCCCATGTCCGCTCTT 61.955 57.895 0.00 0.00 0.00 2.85
307 308 3.390521 TTCGCCCATGTCCGCTCT 61.391 61.111 0.00 0.00 0.00 4.09
308 309 3.195698 GTTCGCCCATGTCCGCTC 61.196 66.667 0.00 0.00 0.00 5.03
309 310 4.778143 GGTTCGCCCATGTCCGCT 62.778 66.667 0.00 0.00 0.00 5.52
323 324 4.629958 TTGGGGCGGCAATGGGTT 62.630 61.111 12.47 0.00 0.00 4.11
324 325 4.629958 TTTGGGGCGGCAATGGGT 62.630 61.111 12.47 0.00 0.00 4.51
325 326 3.773404 CTTTGGGGCGGCAATGGG 61.773 66.667 12.47 0.00 0.00 4.00
326 327 3.773404 CCTTTGGGGCGGCAATGG 61.773 66.667 12.47 5.44 0.00 3.16
336 337 1.337728 GCCGAATTTTGTCCCTTTGGG 60.338 52.381 0.00 0.00 46.11 4.12
337 338 1.618343 AGCCGAATTTTGTCCCTTTGG 59.382 47.619 0.00 0.00 0.00 3.28
338 339 4.513198 TTAGCCGAATTTTGTCCCTTTG 57.487 40.909 0.00 0.00 0.00 2.77
339 340 4.262292 GGTTTAGCCGAATTTTGTCCCTTT 60.262 41.667 0.00 0.00 0.00 3.11
340 341 3.257375 GGTTTAGCCGAATTTTGTCCCTT 59.743 43.478 0.00 0.00 0.00 3.95
341 342 2.823747 GGTTTAGCCGAATTTTGTCCCT 59.176 45.455 0.00 0.00 0.00 4.20
342 343 3.226346 GGTTTAGCCGAATTTTGTCCC 57.774 47.619 0.00 0.00 0.00 4.46
363 364 2.735857 CGACCCAAACGGACGTCC 60.736 66.667 25.28 25.28 43.65 4.79
367 368 3.708734 CGCACGACCCAAACGGAC 61.709 66.667 0.00 0.00 34.64 4.79
368 369 4.973055 CCGCACGACCCAAACGGA 62.973 66.667 0.00 0.00 46.71 4.69
370 371 4.007940 CACCGCACGACCCAAACG 62.008 66.667 0.00 0.00 0.00 3.60
371 372 3.656045 CCACCGCACGACCCAAAC 61.656 66.667 0.00 0.00 0.00 2.93
372 373 3.818121 CTCCACCGCACGACCCAAA 62.818 63.158 0.00 0.00 0.00 3.28
373 374 4.308458 CTCCACCGCACGACCCAA 62.308 66.667 0.00 0.00 0.00 4.12
375 376 4.309950 AACTCCACCGCACGACCC 62.310 66.667 0.00 0.00 0.00 4.46
376 377 3.041940 CAACTCCACCGCACGACC 61.042 66.667 0.00 0.00 0.00 4.79
377 378 3.041940 CCAACTCCACCGCACGAC 61.042 66.667 0.00 0.00 0.00 4.34
378 379 4.980805 GCCAACTCCACCGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
384 385 2.046285 CCATTCGGCCAACTCCACC 61.046 63.158 2.24 0.00 0.00 4.61
385 386 0.893727 AACCATTCGGCCAACTCCAC 60.894 55.000 2.24 0.00 34.57 4.02
386 387 0.893270 CAACCATTCGGCCAACTCCA 60.893 55.000 2.24 0.00 34.57 3.86
387 388 0.893727 ACAACCATTCGGCCAACTCC 60.894 55.000 2.24 0.00 34.57 3.85
388 389 0.240945 CACAACCATTCGGCCAACTC 59.759 55.000 2.24 0.00 34.57 3.01
389 390 1.178534 CCACAACCATTCGGCCAACT 61.179 55.000 2.24 0.00 34.57 3.16
390 391 1.288752 CCACAACCATTCGGCCAAC 59.711 57.895 2.24 0.00 34.57 3.77
391 392 0.757188 AACCACAACCATTCGGCCAA 60.757 50.000 2.24 0.00 34.57 4.52
392 393 1.152652 AACCACAACCATTCGGCCA 60.153 52.632 2.24 0.00 34.57 5.36
393 394 1.175983 TCAACCACAACCATTCGGCC 61.176 55.000 0.00 0.00 34.57 6.13
394 395 0.887933 ATCAACCACAACCATTCGGC 59.112 50.000 0.00 0.00 34.57 5.54
395 396 4.775058 TTAATCAACCACAACCATTCGG 57.225 40.909 0.00 0.00 38.77 4.30
396 397 5.948588 TCATTAATCAACCACAACCATTCG 58.051 37.500 0.00 0.00 0.00 3.34
397 398 7.872483 ACTTTCATTAATCAACCACAACCATTC 59.128 33.333 0.00 0.00 0.00 2.67
398 399 7.734942 ACTTTCATTAATCAACCACAACCATT 58.265 30.769 0.00 0.00 0.00 3.16
399 400 7.301868 ACTTTCATTAATCAACCACAACCAT 57.698 32.000 0.00 0.00 0.00 3.55
400 401 6.723298 ACTTTCATTAATCAACCACAACCA 57.277 33.333 0.00 0.00 0.00 3.67
401 402 8.334632 CAAAACTTTCATTAATCAACCACAACC 58.665 33.333 0.00 0.00 0.00 3.77
402 403 7.850492 GCAAAACTTTCATTAATCAACCACAAC 59.150 33.333 0.00 0.00 0.00 3.32
403 404 7.768120 AGCAAAACTTTCATTAATCAACCACAA 59.232 29.630 0.00 0.00 0.00 3.33
404 405 7.271511 AGCAAAACTTTCATTAATCAACCACA 58.728 30.769 0.00 0.00 0.00 4.17
405 406 7.713764 AGCAAAACTTTCATTAATCAACCAC 57.286 32.000 0.00 0.00 0.00 4.16
406 407 8.729805 AAAGCAAAACTTTCATTAATCAACCA 57.270 26.923 0.00 0.00 45.78 3.67
450 451 9.573166 TTTCTGAAAATTGGTCCGATATATGAT 57.427 29.630 0.00 0.00 0.00 2.45
451 452 8.972458 TTTCTGAAAATTGGTCCGATATATGA 57.028 30.769 0.00 0.00 0.00 2.15
498 499 6.055588 ACTGAACAGGATTCTTCGAGAAAAA 58.944 36.000 6.76 0.00 37.82 1.94
499 500 5.611374 ACTGAACAGGATTCTTCGAGAAAA 58.389 37.500 6.76 0.00 37.82 2.29
500 501 5.215252 ACTGAACAGGATTCTTCGAGAAA 57.785 39.130 6.76 0.00 37.82 2.52
501 502 4.873746 ACTGAACAGGATTCTTCGAGAA 57.126 40.909 6.76 0.79 38.78 2.87
502 503 4.873746 AACTGAACAGGATTCTTCGAGA 57.126 40.909 6.76 0.00 0.00 4.04
503 504 7.385205 TCTTTAAACTGAACAGGATTCTTCGAG 59.615 37.037 6.76 0.00 0.00 4.04
504 505 7.214381 TCTTTAAACTGAACAGGATTCTTCGA 58.786 34.615 6.76 0.00 0.00 3.71
505 506 7.360438 CCTCTTTAAACTGAACAGGATTCTTCG 60.360 40.741 6.76 0.00 0.00 3.79
506 507 7.094592 CCCTCTTTAAACTGAACAGGATTCTTC 60.095 40.741 6.76 0.00 0.00 2.87
507 508 6.717084 CCCTCTTTAAACTGAACAGGATTCTT 59.283 38.462 6.76 0.00 0.00 2.52
508 509 6.241645 CCCTCTTTAAACTGAACAGGATTCT 58.758 40.000 6.76 0.00 0.00 2.40
509 510 5.106118 GCCCTCTTTAAACTGAACAGGATTC 60.106 44.000 6.76 0.00 0.00 2.52
510 511 4.767409 GCCCTCTTTAAACTGAACAGGATT 59.233 41.667 6.76 4.08 0.00 3.01
511 512 4.336280 GCCCTCTTTAAACTGAACAGGAT 58.664 43.478 6.76 0.00 0.00 3.24
512 513 3.497942 GGCCCTCTTTAAACTGAACAGGA 60.498 47.826 6.76 0.00 0.00 3.86
513 514 2.820197 GGCCCTCTTTAAACTGAACAGG 59.180 50.000 6.76 0.00 0.00 4.00
514 515 2.820197 GGGCCCTCTTTAAACTGAACAG 59.180 50.000 17.04 0.00 0.00 3.16
515 516 2.812613 CGGGCCCTCTTTAAACTGAACA 60.813 50.000 22.43 0.00 0.00 3.18
516 517 1.810755 CGGGCCCTCTTTAAACTGAAC 59.189 52.381 22.43 0.00 0.00 3.18
517 518 1.700739 TCGGGCCCTCTTTAAACTGAA 59.299 47.619 22.43 0.00 0.00 3.02
518 519 1.278127 CTCGGGCCCTCTTTAAACTGA 59.722 52.381 22.43 4.20 0.00 3.41
519 520 1.003233 ACTCGGGCCCTCTTTAAACTG 59.997 52.381 22.43 0.00 0.00 3.16
520 521 1.359168 ACTCGGGCCCTCTTTAAACT 58.641 50.000 22.43 0.00 0.00 2.66
521 522 2.082231 GAACTCGGGCCCTCTTTAAAC 58.918 52.381 22.43 0.00 0.00 2.01
522 523 1.338389 CGAACTCGGGCCCTCTTTAAA 60.338 52.381 22.43 0.00 35.37 1.52
523 524 0.248289 CGAACTCGGGCCCTCTTTAA 59.752 55.000 22.43 0.00 35.37 1.52
524 525 0.901580 ACGAACTCGGGCCCTCTTTA 60.902 55.000 22.43 0.00 44.95 1.85
525 526 1.765597 AACGAACTCGGGCCCTCTTT 61.766 55.000 22.43 9.46 44.95 2.52
526 527 2.168666 GAACGAACTCGGGCCCTCTT 62.169 60.000 22.43 7.77 44.95 2.85
527 528 2.603776 AACGAACTCGGGCCCTCT 60.604 61.111 22.43 0.00 44.95 3.69
528 529 2.125633 GAACGAACTCGGGCCCTC 60.126 66.667 22.43 9.73 44.95 4.30
529 530 4.065281 CGAACGAACTCGGGCCCT 62.065 66.667 22.43 0.00 44.95 5.19
542 543 3.414700 CAGTGAGCCACGCCGAAC 61.415 66.667 0.00 0.00 39.64 3.95
543 544 4.680237 CCAGTGAGCCACGCCGAA 62.680 66.667 0.00 0.00 39.64 4.30
552 553 4.459089 GAGGACCGGCCAGTGAGC 62.459 72.222 15.92 0.00 40.02 4.26
553 554 3.775654 GGAGGACCGGCCAGTGAG 61.776 72.222 15.92 0.00 40.02 3.51
556 557 4.658786 AAGGGAGGACCGGCCAGT 62.659 66.667 15.92 0.00 46.96 4.00
557 558 2.821679 GAAAAGGGAGGACCGGCCAG 62.822 65.000 15.92 0.00 46.96 4.85
558 559 2.856988 AAAAGGGAGGACCGGCCA 60.857 61.111 15.92 0.00 46.96 5.36
559 560 2.045242 GAAAAGGGAGGACCGGCC 60.045 66.667 0.00 3.58 46.96 6.13
560 561 2.436115 CGAAAAGGGAGGACCGGC 60.436 66.667 0.00 0.00 46.96 6.13
561 562 2.267961 CCGAAAAGGGAGGACCGG 59.732 66.667 0.00 0.00 46.96 5.28
562 563 2.436115 GCCGAAAAGGGAGGACCG 60.436 66.667 0.00 0.00 46.96 4.79
563 564 2.436115 CGCCGAAAAGGGAGGACC 60.436 66.667 0.00 0.00 41.48 4.46
705 708 4.767255 GTCAGGGCCAGGCACTCG 62.767 72.222 15.60 10.16 38.16 4.18
706 709 4.416738 GGTCAGGGCCAGGCACTC 62.417 72.222 15.60 2.86 38.16 3.51
740 743 3.744719 CGCTCGGGGTCTTCGTCA 61.745 66.667 0.00 0.00 0.00 4.35
755 758 1.155424 TTCGGGTAATTCGGATGCGC 61.155 55.000 0.00 0.00 0.00 6.09
756 759 0.859232 CTTCGGGTAATTCGGATGCG 59.141 55.000 0.00 0.00 0.00 4.73
757 760 1.865340 GACTTCGGGTAATTCGGATGC 59.135 52.381 0.00 0.00 0.00 3.91
760 763 1.894466 TGTGACTTCGGGTAATTCGGA 59.106 47.619 0.00 0.00 0.00 4.55
761 764 2.373540 TGTGACTTCGGGTAATTCGG 57.626 50.000 0.00 0.00 0.00 4.30
762 765 2.414138 GGTTGTGACTTCGGGTAATTCG 59.586 50.000 0.00 0.00 0.00 3.34
763 766 2.414138 CGGTTGTGACTTCGGGTAATTC 59.586 50.000 0.00 0.00 0.00 2.17
764 767 2.037511 TCGGTTGTGACTTCGGGTAATT 59.962 45.455 0.00 0.00 0.00 1.40
765 768 1.619827 TCGGTTGTGACTTCGGGTAAT 59.380 47.619 0.00 0.00 0.00 1.89
766 769 1.039068 TCGGTTGTGACTTCGGGTAA 58.961 50.000 0.00 0.00 0.00 2.85
767 770 1.259609 ATCGGTTGTGACTTCGGGTA 58.740 50.000 0.00 0.00 0.00 3.69
768 771 0.395312 AATCGGTTGTGACTTCGGGT 59.605 50.000 0.00 0.00 0.00 5.28
769 772 1.076332 GAATCGGTTGTGACTTCGGG 58.924 55.000 0.00 0.00 0.00 5.14
770 773 1.790755 TGAATCGGTTGTGACTTCGG 58.209 50.000 0.00 0.00 0.00 4.30
771 774 2.096417 GGTTGAATCGGTTGTGACTTCG 60.096 50.000 0.00 0.00 0.00 3.79
772 775 2.096417 CGGTTGAATCGGTTGTGACTTC 60.096 50.000 0.00 0.00 0.00 3.01
773 776 1.871039 CGGTTGAATCGGTTGTGACTT 59.129 47.619 0.00 0.00 0.00 3.01
774 777 1.069513 TCGGTTGAATCGGTTGTGACT 59.930 47.619 0.00 0.00 0.00 3.41
775 778 1.459592 CTCGGTTGAATCGGTTGTGAC 59.540 52.381 0.00 0.00 0.00 3.67
776 779 1.341852 TCTCGGTTGAATCGGTTGTGA 59.658 47.619 0.00 0.00 0.00 3.58
777 780 1.459592 GTCTCGGTTGAATCGGTTGTG 59.540 52.381 0.00 0.00 0.00 3.33
778 781 1.607251 GGTCTCGGTTGAATCGGTTGT 60.607 52.381 0.00 0.00 0.00 3.32
781 784 1.214589 CGGTCTCGGTTGAATCGGT 59.785 57.895 0.00 0.00 0.00 4.69
893 896 3.041940 CGCGAAAAGGTGTCGGCT 61.042 61.111 0.00 0.00 38.93 5.52
894 897 4.084888 CCGCGAAAAGGTGTCGGC 62.085 66.667 8.23 0.00 38.93 5.54
895 898 4.084888 GCCGCGAAAAGGTGTCGG 62.085 66.667 8.23 0.00 42.68 4.79
896 899 4.084888 GGCCGCGAAAAGGTGTCG 62.085 66.667 8.23 0.00 41.46 4.35
960 963 4.436998 GTGCCTCCGGGTCAGTCG 62.437 72.222 0.00 0.00 34.45 4.18
961 964 4.436998 CGTGCCTCCGGGTCAGTC 62.437 72.222 0.00 0.00 34.45 3.51
1249 1252 2.122189 GATGGGAGGGAGGGAGGG 60.122 72.222 0.00 0.00 0.00 4.30
1250 1253 2.122189 GGATGGGAGGGAGGGAGG 60.122 72.222 0.00 0.00 0.00 4.30
1251 1254 2.122189 GGGATGGGAGGGAGGGAG 60.122 72.222 0.00 0.00 0.00 4.30
1252 1255 2.964039 TGGGATGGGAGGGAGGGA 60.964 66.667 0.00 0.00 0.00 4.20
1322 1325 2.795973 GCCATCCGCCCGTTTAAC 59.204 61.111 0.00 0.00 0.00 2.01
1396 1401 2.930040 AGATTTGGTATCGTTGCGTCTG 59.070 45.455 0.00 0.00 0.00 3.51
1548 1553 8.081633 TCTGAAACGAATCTGCAAATTGTATTT 58.918 29.630 0.00 0.00 0.00 1.40
1611 1616 8.899427 ATGACAAATACTGAGATTAGACATGG 57.101 34.615 0.00 0.00 0.00 3.66
1698 1705 5.146010 TCCACAGAAAAGCAACAAAAAGT 57.854 34.783 0.00 0.00 0.00 2.66
1790 1797 1.405872 TTGATACTCCATACGGGCGT 58.594 50.000 0.00 0.00 38.42 5.68
1808 1815 7.161773 AGTCATGCAGTAATTTGTGCTAATT 57.838 32.000 11.68 0.00 40.54 1.40
1811 1818 6.573664 AAAGTCATGCAGTAATTTGTGCTA 57.426 33.333 11.68 1.54 40.54 3.49
1813 1820 5.107375 CCAAAAGTCATGCAGTAATTTGTGC 60.107 40.000 0.00 5.05 40.29 4.57
1814 1821 5.984926 ACCAAAAGTCATGCAGTAATTTGTG 59.015 36.000 0.00 0.00 0.00 3.33
1942 1961 2.422832 CTCATTCTTTCCTCTTGCAGGC 59.577 50.000 0.00 0.00 43.08 4.85
1998 2017 6.092092 TGAAATTTGAAATGATAGTGCGTGG 58.908 36.000 0.00 0.00 0.00 4.94
2040 2059 8.186178 AGCGTATAAAACTAGTTGACTCATTG 57.814 34.615 9.34 0.00 0.00 2.82
2100 2119 9.459640 TCAAACCTAGAGAATATTCGTAAATCG 57.540 33.333 9.78 0.00 41.41 3.34
2103 2122 9.932207 TGTTCAAACCTAGAGAATATTCGTAAA 57.068 29.630 9.78 0.00 0.00 2.01
2104 2123 9.932207 TTGTTCAAACCTAGAGAATATTCGTAA 57.068 29.630 9.78 0.00 0.00 3.18
2105 2124 9.932207 TTTGTTCAAACCTAGAGAATATTCGTA 57.068 29.630 9.78 5.32 0.00 3.43
2106 2125 8.842358 TTTGTTCAAACCTAGAGAATATTCGT 57.158 30.769 9.78 4.43 0.00 3.85
2107 2126 8.391106 CCTTTGTTCAAACCTAGAGAATATTCG 58.609 37.037 9.78 0.00 0.00 3.34
2119 2138 7.180051 TCCATATATTTGCCTTTGTTCAAACCT 59.820 33.333 0.00 0.00 35.34 3.50
2158 2177 2.293677 TGGAAAATTACAAGCGCCGAAA 59.706 40.909 2.29 0.00 0.00 3.46
2179 2198 9.790297 ACCTCCAGATACATAAATCTATACCAT 57.210 33.333 0.00 0.00 34.40 3.55
2187 2206 5.237344 GTGCACACCTCCAGATACATAAATC 59.763 44.000 13.17 0.00 0.00 2.17
2241 2260 5.067153 TCCAGTTACACATTTCAGTTTGGTG 59.933 40.000 0.00 0.00 35.66 4.17
2396 2417 2.182516 ACCTGATAGTCTCAAGGGGG 57.817 55.000 0.00 0.00 32.14 5.40
2503 2524 5.121380 AGCTTACACCATCAAGGATCAAT 57.879 39.130 0.00 0.00 41.22 2.57
2504 2525 4.574674 AGCTTACACCATCAAGGATCAA 57.425 40.909 0.00 0.00 41.22 2.57
2587 2608 1.209019 GCTGGAGCTCTGATTTCTGGA 59.791 52.381 14.64 0.00 38.21 3.86
2645 2667 8.567285 AGTGAAGAACTTGAAAGAAAGAGAAA 57.433 30.769 0.00 0.00 34.57 2.52
2705 2731 5.589050 AGTCAACTTTCTCAACTTGGTTACC 59.411 40.000 0.00 0.00 0.00 2.85
2713 2739 5.292101 CAGTTTCGAGTCAACTTTCTCAACT 59.708 40.000 0.00 0.00 31.83 3.16
2714 2740 5.291128 TCAGTTTCGAGTCAACTTTCTCAAC 59.709 40.000 0.00 0.00 31.83 3.18
2730 2756 9.843334 AGTTTAGAGATTTAGTACTCAGTTTCG 57.157 33.333 0.00 0.00 35.83 3.46
2807 2833 9.355916 TGTAGTTCTGTAGCATATCAGTAAGAT 57.644 33.333 0.00 0.00 40.86 2.40
2826 2852 2.464157 ACTCAGCAGCCTTGTAGTTC 57.536 50.000 0.00 0.00 0.00 3.01
2902 2928 6.814954 AGATTTAATGGAGGCTGAGAGTTA 57.185 37.500 0.00 0.00 0.00 2.24
2994 3020 9.851686 TTAGAGATTAATTTGGATATGCACTGT 57.148 29.630 0.00 0.00 0.00 3.55
3031 3057 3.572584 GGATACTACCAAGAATACCGCG 58.427 50.000 0.00 0.00 0.00 6.46
3054 3080 5.105997 ACAAATATCTCAGAAAAGCAGGCAC 60.106 40.000 0.00 0.00 0.00 5.01
3101 3127 3.694566 ACTCTCAACTTTCAACACCCAAC 59.305 43.478 0.00 0.00 0.00 3.77
3146 3176 7.330208 GTGAGCAAATTAGCATTCAACTTCAAT 59.670 33.333 0.00 0.00 36.85 2.57
3173 3203 5.185249 TGACTATAGAACTCCACCAAGACAC 59.815 44.000 6.78 0.00 0.00 3.67
3175 3205 5.916661 TGACTATAGAACTCCACCAAGAC 57.083 43.478 6.78 0.00 0.00 3.01
3246 3276 5.247507 TGTCCTGAAATAAATGAATGCCG 57.752 39.130 0.00 0.00 0.00 5.69
3249 3279 9.309516 CCATTCTTGTCCTGAAATAAATGAATG 57.690 33.333 0.00 0.00 37.70 2.67
3289 3319 2.957006 ACTACCACCGATATGTCTGGAC 59.043 50.000 4.96 0.00 0.00 4.02
3303 3333 4.396166 CCATGATCTCCACAAAACTACCAC 59.604 45.833 0.00 0.00 0.00 4.16
3331 3361 0.786435 AAAGCCCTCTCCACCCATTT 59.214 50.000 0.00 0.00 0.00 2.32
3479 3509 6.535150 TCGATTTTCATCTTACCAAGCTGTAG 59.465 38.462 0.00 0.00 0.00 2.74
3493 3523 6.708054 AGTGGAGTGGAATATCGATTTTCATC 59.292 38.462 24.01 18.50 0.00 2.92
3678 3708 8.539770 AACAACTGAATATGACACAAGTAGAG 57.460 34.615 0.00 0.00 0.00 2.43
3966 3998 2.363680 ACCTGTCAGAGCTCCGATAATG 59.636 50.000 10.93 0.47 0.00 1.90
3993 4025 0.740737 AGTTGCAGGCAGTGTTGAAC 59.259 50.000 0.00 0.00 0.00 3.18
4061 4093 3.558505 CAGTTGAAATTCCGCTTCTGTG 58.441 45.455 0.00 0.00 0.00 3.66
4080 4115 0.963962 AGTCATTGTTTGGGCAGCAG 59.036 50.000 0.00 0.00 0.00 4.24
4095 4130 3.478780 CCCTCGGGTTCCAAGTCA 58.521 61.111 0.00 0.00 0.00 3.41
4106 4141 0.899720 TGCCTGTTTACTACCCTCGG 59.100 55.000 0.00 0.00 0.00 4.63
4131 4166 2.941720 GCATGCAACCAACAAGGAAAAA 59.058 40.909 14.21 0.00 41.22 1.94
4714 4768 1.577328 AATGGAGCGCACGGAAACAG 61.577 55.000 11.47 0.00 0.00 3.16
4721 4775 0.179111 TAGGAGAAATGGAGCGCACG 60.179 55.000 11.47 0.00 0.00 5.34
4725 4779 3.249091 CGATGATAGGAGAAATGGAGCG 58.751 50.000 0.00 0.00 0.00 5.03
4768 4822 0.320683 TGACGGCTCACACCAGAATG 60.321 55.000 0.00 0.00 0.00 2.67
4769 4823 0.036952 CTGACGGCTCACACCAGAAT 60.037 55.000 0.00 0.00 0.00 2.40
4793 4847 3.006537 GCCGGCTGATAATACAAGGTAGA 59.993 47.826 22.15 0.00 0.00 2.59
4806 4862 2.202932 CTTACGCTGCCGGCTGAT 60.203 61.111 34.52 23.29 39.22 2.90
4850 4911 3.668447 ACAGTTAGCACCACAATCTGAG 58.332 45.455 0.00 0.00 0.00 3.35
4868 4929 9.751542 AGTCGTCAGATCCTTTTTATTATACAG 57.248 33.333 0.00 0.00 0.00 2.74
4886 4947 4.106197 GCAGTGGATAGTTTAGTCGTCAG 58.894 47.826 0.00 0.00 0.00 3.51
4888 4949 4.106029 TGCAGTGGATAGTTTAGTCGTC 57.894 45.455 0.00 0.00 0.00 4.20
4917 4978 5.395682 ACAGTGGATAGTTTACAGCGTAA 57.604 39.130 0.00 0.00 0.00 3.18
4918 4979 5.882000 TCTACAGTGGATAGTTTACAGCGTA 59.118 40.000 0.00 0.00 0.00 4.42
4919 4980 3.955650 ACAGTGGATAGTTTACAGCGT 57.044 42.857 0.00 0.00 0.00 5.07
4920 4981 5.244785 TCTACAGTGGATAGTTTACAGCG 57.755 43.478 0.00 0.00 0.00 5.18
4921 4982 7.014422 ACCTATCTACAGTGGATAGTTTACAGC 59.986 40.741 24.83 0.00 40.32 4.40
4922 4983 8.353684 CACCTATCTACAGTGGATAGTTTACAG 58.646 40.741 24.83 14.77 40.32 2.74
4923 4984 7.837689 ACACCTATCTACAGTGGATAGTTTACA 59.162 37.037 24.83 0.00 40.32 2.41
4924 4985 8.235359 ACACCTATCTACAGTGGATAGTTTAC 57.765 38.462 24.83 0.00 40.32 2.01
4925 4986 8.834004 AACACCTATCTACAGTGGATAGTTTA 57.166 34.615 24.83 0.73 40.32 2.01
4926 4987 7.735326 AACACCTATCTACAGTGGATAGTTT 57.265 36.000 24.83 15.45 40.32 2.66
4927 4988 7.735326 AAACACCTATCTACAGTGGATAGTT 57.265 36.000 24.83 13.78 40.32 2.24
4928 4989 9.080097 GATAAACACCTATCTACAGTGGATAGT 57.920 37.037 24.83 14.48 40.32 2.12
4929 4990 9.303116 AGATAAACACCTATCTACAGTGGATAG 57.697 37.037 21.71 21.71 41.11 2.08
4930 4991 9.656323 AAGATAAACACCTATCTACAGTGGATA 57.344 33.333 6.47 6.47 37.60 2.59
4931 4992 8.424918 CAAGATAAACACCTATCTACAGTGGAT 58.575 37.037 4.61 4.61 37.60 3.41
4932 4993 7.399191 ACAAGATAAACACCTATCTACAGTGGA 59.601 37.037 0.00 0.00 37.60 4.02
4933 4994 7.556844 ACAAGATAAACACCTATCTACAGTGG 58.443 38.462 0.00 0.00 37.60 4.00
4934 4995 8.873830 CAACAAGATAAACACCTATCTACAGTG 58.126 37.037 0.00 0.00 37.60 3.66
4935 4996 8.594550 ACAACAAGATAAACACCTATCTACAGT 58.405 33.333 0.00 0.00 37.60 3.55
4936 4997 9.436957 AACAACAAGATAAACACCTATCTACAG 57.563 33.333 0.00 0.00 37.60 2.74
4937 4998 9.787435 AAACAACAAGATAAACACCTATCTACA 57.213 29.630 0.00 0.00 37.60 2.74
4940 5001 9.574516 AAGAAACAACAAGATAAACACCTATCT 57.425 29.630 0.00 0.00 39.79 1.98
4957 5018 9.712359 AGTCGACAACTAATTAAAAGAAACAAC 57.288 29.630 19.50 0.00 36.07 3.32
4980 5041 7.444487 ACCTAGAGGAAAACACAATTTACAGTC 59.556 37.037 1.60 0.00 38.94 3.51
5006 5068 8.282982 AGGAAGAAATGATACTAGGAGAGTGTA 58.717 37.037 0.00 0.00 39.39 2.90
5007 5069 7.129425 AGGAAGAAATGATACTAGGAGAGTGT 58.871 38.462 0.00 0.00 39.39 3.55
5008 5070 7.595819 AGGAAGAAATGATACTAGGAGAGTG 57.404 40.000 0.00 0.00 39.39 3.51
5009 5071 7.070571 CCAAGGAAGAAATGATACTAGGAGAGT 59.929 40.741 0.00 0.00 42.69 3.24
5010 5072 7.070571 ACCAAGGAAGAAATGATACTAGGAGAG 59.929 40.741 0.00 0.00 0.00 3.20
5011 5073 6.903534 ACCAAGGAAGAAATGATACTAGGAGA 59.096 38.462 0.00 0.00 0.00 3.71
5012 5074 7.130681 ACCAAGGAAGAAATGATACTAGGAG 57.869 40.000 0.00 0.00 0.00 3.69
5013 5075 6.672218 TGACCAAGGAAGAAATGATACTAGGA 59.328 38.462 0.00 0.00 0.00 2.94
5014 5076 6.889198 TGACCAAGGAAGAAATGATACTAGG 58.111 40.000 0.00 0.00 0.00 3.02
5015 5077 8.206867 TGATGACCAAGGAAGAAATGATACTAG 58.793 37.037 0.00 0.00 0.00 2.57
5016 5078 8.089625 TGATGACCAAGGAAGAAATGATACTA 57.910 34.615 0.00 0.00 0.00 1.82
5017 5079 6.962182 TGATGACCAAGGAAGAAATGATACT 58.038 36.000 0.00 0.00 0.00 2.12
5018 5080 7.630242 TTGATGACCAAGGAAGAAATGATAC 57.370 36.000 0.00 0.00 0.00 2.24
5019 5081 7.890127 AGTTTGATGACCAAGGAAGAAATGATA 59.110 33.333 0.00 0.00 35.94 2.15
5020 5082 6.723052 AGTTTGATGACCAAGGAAGAAATGAT 59.277 34.615 0.00 0.00 35.94 2.45
5021 5083 6.070656 AGTTTGATGACCAAGGAAGAAATGA 58.929 36.000 0.00 0.00 35.94 2.57
5022 5084 6.336842 AGTTTGATGACCAAGGAAGAAATG 57.663 37.500 0.00 0.00 35.94 2.32
5023 5085 6.779539 AGAAGTTTGATGACCAAGGAAGAAAT 59.220 34.615 0.00 0.00 35.94 2.17
5024 5086 6.129179 AGAAGTTTGATGACCAAGGAAGAAA 58.871 36.000 0.00 0.00 35.94 2.52
5025 5087 5.694995 AGAAGTTTGATGACCAAGGAAGAA 58.305 37.500 0.00 0.00 35.94 2.52
5026 5088 5.072329 AGAGAAGTTTGATGACCAAGGAAGA 59.928 40.000 0.00 0.00 35.94 2.87
5027 5089 5.312079 AGAGAAGTTTGATGACCAAGGAAG 58.688 41.667 0.00 0.00 35.94 3.46
5028 5090 5.072329 AGAGAGAAGTTTGATGACCAAGGAA 59.928 40.000 0.00 0.00 35.94 3.36
5029 5091 4.594920 AGAGAGAAGTTTGATGACCAAGGA 59.405 41.667 0.00 0.00 35.94 3.36
5030 5092 4.904241 AGAGAGAAGTTTGATGACCAAGG 58.096 43.478 0.00 0.00 35.94 3.61
5031 5093 6.229733 AGAAGAGAGAAGTTTGATGACCAAG 58.770 40.000 0.00 0.00 35.94 3.61
5032 5094 6.042552 AGAGAAGAGAGAAGTTTGATGACCAA 59.957 38.462 0.00 0.00 0.00 3.67
5033 5095 5.541868 AGAGAAGAGAGAAGTTTGATGACCA 59.458 40.000 0.00 0.00 0.00 4.02
5034 5096 6.036577 AGAGAAGAGAGAAGTTTGATGACC 57.963 41.667 0.00 0.00 0.00 4.02
5035 5097 9.651913 ATTAAGAGAAGAGAGAAGTTTGATGAC 57.348 33.333 0.00 0.00 0.00 3.06
5039 5101 9.930693 GGTAATTAAGAGAAGAGAGAAGTTTGA 57.069 33.333 0.00 0.00 0.00 2.69
5040 5102 9.936759 AGGTAATTAAGAGAAGAGAGAAGTTTG 57.063 33.333 0.00 0.00 0.00 2.93
5095 5157 9.685828 GCTTTGTATTTGTGGTGAACTTTATAA 57.314 29.630 0.00 0.00 0.00 0.98
5096 5158 8.851145 TGCTTTGTATTTGTGGTGAACTTTATA 58.149 29.630 0.00 0.00 0.00 0.98
5097 5159 7.721402 TGCTTTGTATTTGTGGTGAACTTTAT 58.279 30.769 0.00 0.00 0.00 1.40
5098 5160 7.101652 TGCTTTGTATTTGTGGTGAACTTTA 57.898 32.000 0.00 0.00 0.00 1.85
5099 5161 5.971763 TGCTTTGTATTTGTGGTGAACTTT 58.028 33.333 0.00 0.00 0.00 2.66
5100 5162 5.590530 TGCTTTGTATTTGTGGTGAACTT 57.409 34.783 0.00 0.00 0.00 2.66
5108 5170 7.878477 ATGACTGAAATGCTTTGTATTTGTG 57.122 32.000 0.00 0.00 28.76 3.33
5139 5201 6.015434 AGTGGTCCTTCAATGGTGTTAAATTC 60.015 38.462 0.00 0.00 0.00 2.17
5145 5217 4.657814 ATAGTGGTCCTTCAATGGTGTT 57.342 40.909 0.00 0.00 0.00 3.32
5147 5219 4.335416 ACAATAGTGGTCCTTCAATGGTG 58.665 43.478 0.00 0.00 0.00 4.17
5151 5223 3.270877 GCGACAATAGTGGTCCTTCAAT 58.729 45.455 0.00 0.00 31.55 2.57
5152 5224 2.614481 GGCGACAATAGTGGTCCTTCAA 60.614 50.000 0.00 0.00 31.55 2.69
5153 5225 1.066430 GGCGACAATAGTGGTCCTTCA 60.066 52.381 0.00 0.00 31.55 3.02
5154 5226 1.066430 TGGCGACAATAGTGGTCCTTC 60.066 52.381 0.00 0.00 37.44 3.46
5170 5242 1.664649 TCAACAGCTCGTTCTGGCG 60.665 57.895 10.43 0.00 38.36 5.69
5171 5243 1.862806 GTCAACAGCTCGTTCTGGC 59.137 57.895 10.43 0.00 38.36 4.85
5175 5247 1.201825 GCACGTCAACAGCTCGTTC 59.798 57.895 0.00 0.00 34.86 3.95
5187 5259 3.680756 GTCATTGACAAGCGGCACGTC 62.681 57.143 11.93 13.08 43.15 4.34
5188 5260 1.841663 GTCATTGACAAGCGGCACGT 61.842 55.000 11.93 0.00 43.15 4.49
5189 5261 1.154413 GTCATTGACAAGCGGCACG 60.154 57.895 11.93 0.00 43.74 5.34
5190 5262 0.110056 CTGTCATTGACAAGCGGCAC 60.110 55.000 19.44 0.00 42.26 5.01
5191 5263 1.855213 GCTGTCATTGACAAGCGGCA 61.855 55.000 19.44 5.62 42.26 5.69
5192 5264 1.154150 GCTGTCATTGACAAGCGGC 60.154 57.895 19.44 15.17 42.26 6.53
5194 5266 1.725641 TAGGCTGTCATTGACAAGCG 58.274 50.000 19.44 10.00 42.26 4.68
5206 5300 3.300013 GCCGTCTCCTTAGGCTGT 58.700 61.111 0.00 0.00 46.83 4.40
5212 5372 3.194116 ACGTAGATTTTGCCGTCTCCTTA 59.806 43.478 0.00 0.00 0.00 2.69
5220 5380 1.058695 GTCGACACGTAGATTTTGCCG 59.941 52.381 11.55 0.00 0.00 5.69
5234 5394 2.222678 GTCTGTCTGAACGTAGTCGACA 59.777 50.000 19.50 0.48 45.00 4.35
5243 5403 2.721603 CTCGAGTTTGTCTGTCTGAACG 59.278 50.000 3.62 0.00 0.00 3.95
5246 5406 3.883489 TCTTCTCGAGTTTGTCTGTCTGA 59.117 43.478 13.13 0.00 0.00 3.27
5249 5409 4.322274 CGATTCTTCTCGAGTTTGTCTGTC 59.678 45.833 13.13 1.70 41.12 3.51
5256 5416 2.417515 GGCTCCGATTCTTCTCGAGTTT 60.418 50.000 13.13 0.00 41.12 2.66
5262 5422 3.886505 TCTTCTAGGCTCCGATTCTTCTC 59.113 47.826 0.00 0.00 0.00 2.87
5268 5428 3.515901 AGTTTGTCTTCTAGGCTCCGATT 59.484 43.478 0.00 0.00 0.00 3.34
5278 5438 4.227538 CGCTTCTTCGAGTTTGTCTTCTA 58.772 43.478 0.00 0.00 0.00 2.10
5292 5452 3.577313 GGATGGCGGCGCTTCTTC 61.577 66.667 32.30 21.14 0.00 2.87
5304 5464 2.625823 GGTGTGGCGTTGTGGATGG 61.626 63.158 0.00 0.00 0.00 3.51
5318 5478 2.922740 TTTTTAGTCCTCGCAGGTGT 57.077 45.000 2.68 0.00 36.53 4.16
5348 5508 0.389426 TTCGCTCCGGTTAGCAGTTC 60.389 55.000 14.86 0.00 42.91 3.01
5350 5510 1.215647 CTTCGCTCCGGTTAGCAGT 59.784 57.895 14.86 0.00 42.91 4.40
5351 5511 1.519455 CCTTCGCTCCGGTTAGCAG 60.519 63.158 14.86 5.86 42.91 4.24
5361 5521 0.389757 GGATCCTGGTACCTTCGCTC 59.610 60.000 14.36 3.71 0.00 5.03
5365 5525 0.029989 AGGGGGATCCTGGTACCTTC 60.030 60.000 14.36 4.94 46.07 3.46
5376 5539 3.493303 GTGGCAGGGAGGGGGATC 61.493 72.222 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.