Multiple sequence alignment - TraesCS5B01G273200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G273200 chr5B 100.000 3340 0 0 1 3340 458684347 458687686 0.000000e+00 6168.0
1 TraesCS5B01G273200 chr5B 87.324 71 7 2 2505 2574 210227304 210227373 2.760000e-11 80.5
2 TraesCS5B01G273200 chr5A 91.533 1689 96 25 734 2406 482718664 482720321 0.000000e+00 2283.0
3 TraesCS5B01G273200 chr5A 85.601 757 79 13 1 743 482682062 482682802 0.000000e+00 767.0
4 TraesCS5B01G273200 chr5A 96.970 33 0 1 2969 3001 399306448 399306479 2.000000e-03 54.7
5 TraesCS5B01G273200 chr4A 98.088 837 15 1 2504 3340 702680649 702679814 0.000000e+00 1456.0
6 TraesCS5B01G273200 chr5D 95.000 860 38 4 1654 2508 382343991 382344850 0.000000e+00 1345.0
7 TraesCS5B01G273200 chr5D 92.209 937 37 18 727 1628 382342866 382343801 0.000000e+00 1293.0
8 TraesCS5B01G273200 chr5D 74.032 620 106 28 4 591 337310721 337310125 5.650000e-48 202.0
9 TraesCS5B01G273200 chr2B 95.574 836 31 3 2505 3340 732585489 732584660 0.000000e+00 1334.0
10 TraesCS5B01G273200 chr7D 93.301 836 48 5 2506 3340 528025198 528024370 0.000000e+00 1227.0
11 TraesCS5B01G273200 chr7D 90.411 73 7 0 388 460 122848080 122848008 2.740000e-16 97.1
12 TraesCS5B01G273200 chr6B 93.070 837 36 4 2505 3340 479305831 479306646 0.000000e+00 1205.0
13 TraesCS5B01G273200 chr3D 92.712 837 54 4 2508 3340 152564254 152565087 0.000000e+00 1201.0
14 TraesCS5B01G273200 chr1A 75.983 483 81 28 4 475 575462938 575462480 2.020000e-52 217.0
15 TraesCS5B01G273200 chr3B 89.706 68 7 0 2506 2573 11735148 11735081 1.650000e-13 87.9
16 TraesCS5B01G273200 chr4D 81.443 97 15 3 2506 2600 175811438 175811343 3.570000e-10 76.8
17 TraesCS5B01G273200 chr2D 85.915 71 7 3 2506 2574 370235222 370235153 4.620000e-09 73.1
18 TraesCS5B01G273200 chr6D 84.932 73 7 3 390 462 347407567 347407635 1.660000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G273200 chr5B 458684347 458687686 3339 False 6168 6168 100.0000 1 3340 1 chr5B.!!$F2 3339
1 TraesCS5B01G273200 chr5A 482718664 482720321 1657 False 2283 2283 91.5330 734 2406 1 chr5A.!!$F3 1672
2 TraesCS5B01G273200 chr5A 482682062 482682802 740 False 767 767 85.6010 1 743 1 chr5A.!!$F2 742
3 TraesCS5B01G273200 chr4A 702679814 702680649 835 True 1456 1456 98.0880 2504 3340 1 chr4A.!!$R1 836
4 TraesCS5B01G273200 chr5D 382342866 382344850 1984 False 1319 1345 93.6045 727 2508 2 chr5D.!!$F1 1781
5 TraesCS5B01G273200 chr5D 337310125 337310721 596 True 202 202 74.0320 4 591 1 chr5D.!!$R1 587
6 TraesCS5B01G273200 chr2B 732584660 732585489 829 True 1334 1334 95.5740 2505 3340 1 chr2B.!!$R1 835
7 TraesCS5B01G273200 chr7D 528024370 528025198 828 True 1227 1227 93.3010 2506 3340 1 chr7D.!!$R2 834
8 TraesCS5B01G273200 chr6B 479305831 479306646 815 False 1205 1205 93.0700 2505 3340 1 chr6B.!!$F1 835
9 TraesCS5B01G273200 chr3D 152564254 152565087 833 False 1201 1201 92.7120 2508 3340 1 chr3D.!!$F1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 477 0.035439 GAGGGCGAAGGGTTTGATGA 60.035 55.0 0.0 0.0 0.00 2.92 F
1374 1450 0.458669 GGATAAAGAGGGCGTCACGA 59.541 55.0 0.0 0.0 0.00 4.35 F
1567 1643 0.761323 TTCCACCACTTCCGGTCTCA 60.761 55.0 0.0 0.0 37.07 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1656 0.178984 TGTGGTAGTCCTCCGTGTCA 60.179 55.0 0.00 0.00 34.23 3.58 R
2277 2534 0.534877 ACCTCAGACAACATTGCGCA 60.535 50.0 5.66 5.66 0.00 6.09 R
3037 3300 0.835941 GAGGACAGCCAGTGATGGAT 59.164 55.0 0.00 0.00 36.29 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.896660 GTCCACCGGCAACATGTGT 60.897 57.895 0.00 0.00 37.30 3.72
46 47 2.050168 CACCGGCAACATGTGTGC 60.050 61.111 18.79 18.79 35.03 4.57
51 52 2.429571 GCAACATGTGTGCTGGCG 60.430 61.111 19.37 0.00 0.00 5.69
96 97 2.519441 CGGTCGGATCCCCCTCTA 59.481 66.667 6.06 0.00 0.00 2.43
102 103 0.905337 CGGATCCCCCTCTATCCCAC 60.905 65.000 6.06 0.00 38.80 4.61
114 115 0.928505 TATCCCACCCTAGTCCGACA 59.071 55.000 0.40 0.00 0.00 4.35
115 116 0.397254 ATCCCACCCTAGTCCGACAG 60.397 60.000 0.40 0.00 0.00 3.51
116 117 1.305046 CCCACCCTAGTCCGACAGT 60.305 63.158 0.40 0.00 0.00 3.55
119 120 1.228769 ACCCTAGTCCGACAGTGCA 60.229 57.895 0.40 0.00 0.00 4.57
155 156 3.645268 GATGGACAGGGTGTGGGGC 62.645 68.421 0.00 0.00 0.00 5.80
238 245 4.504916 CCTCTCACGCTGCCTCCG 62.505 72.222 0.00 0.00 0.00 4.63
279 292 1.483316 CGTCTTGCACAACGTACTCA 58.517 50.000 11.00 0.00 34.30 3.41
295 308 1.949847 CTCAAGGACGGGACAGCGAT 61.950 60.000 0.00 0.00 0.00 4.58
315 335 2.182791 CGACGCAGCCTCTGTCAT 59.817 61.111 0.00 0.00 33.43 3.06
320 340 1.002868 GCAGCCTCTGTCATGGTGT 60.003 57.895 0.00 0.00 33.43 4.16
331 351 1.072332 CATGGTGTTGTGGGACGGA 59.928 57.895 0.00 0.00 0.00 4.69
352 372 2.311463 CTGGACGACATCTAGGGTGAT 58.689 52.381 0.00 0.00 32.30 3.06
381 401 4.467084 GTCGGCGAGCATGGGGAA 62.467 66.667 11.20 0.00 0.00 3.97
419 453 1.002624 GAATTGGTGGAGGGACGCA 60.003 57.895 0.00 0.00 0.00 5.24
443 477 0.035439 GAGGGCGAAGGGTTTGATGA 60.035 55.000 0.00 0.00 0.00 2.92
449 483 3.056891 GGCGAAGGGTTTGATGAATTTGA 60.057 43.478 0.00 0.00 0.00 2.69
475 509 2.801875 TTATGACGGGGTCGGGGTGA 62.802 60.000 0.00 0.00 41.39 4.02
485 519 2.261671 CGGGGTGACAAGTCCGAG 59.738 66.667 6.54 0.00 44.69 4.63
486 520 2.663196 GGGGTGACAAGTCCGAGG 59.337 66.667 0.00 0.00 0.00 4.63
510 544 4.235762 ACACGTCTGGTTGCGCCT 62.236 61.111 4.18 0.00 38.35 5.52
511 545 2.048597 CACGTCTGGTTGCGCCTA 60.049 61.111 4.18 0.00 38.35 3.93
539 574 1.185315 CCTCCGCCCAACATTTGAAT 58.815 50.000 0.00 0.00 0.00 2.57
602 637 1.728502 CGTCTCGGTCGGAGTCTTTTC 60.729 57.143 7.24 0.00 43.60 2.29
615 650 2.977580 AGTCTTTTCTTTAGGGGTCGGT 59.022 45.455 0.00 0.00 0.00 4.69
618 653 4.581824 GTCTTTTCTTTAGGGGTCGGTTTT 59.418 41.667 0.00 0.00 0.00 2.43
643 679 1.118033 CGGTAATGATCGAACGTCCG 58.882 55.000 0.00 0.00 0.00 4.79
648 684 4.183686 GATCGAACGTCCGCCCGA 62.184 66.667 0.00 6.50 35.43 5.14
662 698 1.014564 GCCCGAACGTTTGAGAGAGG 61.015 60.000 17.38 9.93 0.00 3.69
701 737 8.697292 GGTTGTAGATTCTCTAACTATCCAACT 58.303 37.037 10.81 0.00 33.10 3.16
778 814 6.725246 TCTCAAAAACAAAATCGAGAGGAAC 58.275 36.000 0.00 0.00 0.00 3.62
799 835 1.890041 CCAGGCGACCGTGTCAAAA 60.890 57.895 5.15 0.00 32.09 2.44
807 848 2.158841 CGACCGTGTCAAAACCTTATGG 59.841 50.000 5.15 0.00 34.25 2.74
846 888 2.890808 AGGATATGTACGGCACACAG 57.109 50.000 0.00 0.00 40.86 3.66
861 906 3.423123 GCACACAGACGACCTTTTAATCG 60.423 47.826 0.00 0.00 43.97 3.34
876 926 3.707440 TCGAAAAACGAGCGCACA 58.293 50.000 11.47 0.00 46.45 4.57
990 1040 1.626654 CCAACGTCCATCGCACAGTC 61.627 60.000 0.00 0.00 44.19 3.51
1083 1135 2.267324 GCTCCGCCAGCTTCTTCT 59.733 61.111 0.00 0.00 45.83 2.85
1206 1258 8.393959 TCTCTTCCTTTATTAATCCCTTCACT 57.606 34.615 0.00 0.00 0.00 3.41
1374 1450 0.458669 GGATAAAGAGGGCGTCACGA 59.541 55.000 0.00 0.00 0.00 4.35
1382 1458 2.181021 GGCGTCACGAAGACCGAT 59.819 61.111 0.00 0.00 44.66 4.18
1412 1488 3.636231 CTGTGGCCGTGGGGAGAA 61.636 66.667 0.00 0.00 34.06 2.87
1441 1517 0.919300 GACGAAGACGAATTACGCCC 59.081 55.000 0.00 0.00 46.94 6.13
1567 1643 0.761323 TTCCACCACTTCCGGTCTCA 60.761 55.000 0.00 0.00 37.07 3.27
1632 1884 3.380479 TCGGTACATAAGCCTATGTGC 57.620 47.619 16.67 15.00 46.21 4.57
1637 1889 5.308825 GGTACATAAGCCTATGTGCATCTT 58.691 41.667 20.68 0.00 46.98 2.40
1639 1891 5.039920 ACATAAGCCTATGTGCATCTTCA 57.960 39.130 7.18 0.00 45.26 3.02
1651 1903 9.619316 CTATGTGCATCTTCAAGATAGTACTAC 57.381 37.037 4.31 0.00 32.12 2.73
1652 1904 7.404671 TGTGCATCTTCAAGATAGTACTACA 57.595 36.000 4.31 0.00 32.12 2.74
1700 1954 0.884704 GGTCTTTGCAGGAGCGTTGA 60.885 55.000 5.46 0.00 46.23 3.18
1789 2043 2.751166 ATGCGTTCTACAAGCTCAGT 57.249 45.000 0.00 0.00 0.00 3.41
1865 2119 8.351461 CCCGACTTAAATTTGGTTAGTTGTTAA 58.649 33.333 0.00 0.00 0.00 2.01
1882 2136 7.346471 AGTTGTTAACCAAGCCTCATATACAT 58.654 34.615 2.48 0.00 32.51 2.29
1883 2137 7.499232 AGTTGTTAACCAAGCCTCATATACATC 59.501 37.037 2.48 0.00 32.51 3.06
1915 2171 4.345854 ACAAAACCAAACTTCTGTGGGTA 58.654 39.130 0.00 0.00 39.39 3.69
1921 2177 6.553953 ACCAAACTTCTGTGGGTAAATTTT 57.446 33.333 0.00 0.00 39.39 1.82
1924 2180 6.257630 CCAAACTTCTGTGGGTAAATTTTGTG 59.742 38.462 0.00 0.00 0.00 3.33
1934 2190 7.230712 TGTGGGTAAATTTTGTGGTTTGTTTTT 59.769 29.630 0.00 0.00 0.00 1.94
1935 2191 7.751348 GTGGGTAAATTTTGTGGTTTGTTTTTC 59.249 33.333 0.00 0.00 0.00 2.29
1953 2209 2.715749 TCCCTGTGCAGTTATCATGG 57.284 50.000 0.00 0.00 0.00 3.66
1966 2222 4.662179 AGTTATCATGGTCCTCATCATGGT 59.338 41.667 0.00 0.00 40.63 3.55
1980 2236 6.201044 CCTCATCATGGTCGTAACTTACAATC 59.799 42.308 0.00 0.00 0.00 2.67
1981 2237 5.746721 TCATCATGGTCGTAACTTACAATCG 59.253 40.000 0.00 0.00 0.00 3.34
2101 2357 1.204704 GGGTGCCTGTTTTTATGCTCC 59.795 52.381 0.00 0.00 36.81 4.70
2242 2499 2.375146 TGCTGTGCCGATACTTCTCTA 58.625 47.619 0.00 0.00 0.00 2.43
2277 2534 3.181454 CCCAAAATGTAGACGGGAGCTAT 60.181 47.826 0.00 0.00 39.44 2.97
2301 2558 3.607775 CGCAATGTTGTCTGAGGTTGAAG 60.608 47.826 0.00 0.00 0.00 3.02
2348 2605 6.472808 GGATCGCGGTCATATAAAACTCTATC 59.527 42.308 22.78 2.82 0.00 2.08
2349 2606 5.388111 TCGCGGTCATATAAAACTCTATCG 58.612 41.667 6.13 0.00 0.00 2.92
2553 2810 3.334583 AGAAGCCTTCACAGCGATTTA 57.665 42.857 7.29 0.00 34.64 1.40
3011 3273 1.987855 CGTTCCTCCCTGGTGGCTA 60.988 63.158 0.00 0.00 37.07 3.93
3037 3300 3.286751 GCTCAACAAGCCGTGGCA 61.287 61.111 14.29 0.00 45.92 4.92
3283 3549 9.082313 ACTTTCTGACAATAATTTGACAGGAAT 57.918 29.630 14.80 4.47 45.59 3.01
3332 3598 3.255642 AGCACTGCACGGATGTAAAATTT 59.744 39.130 3.30 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.672996 GGAAGCTTTCCGCCAGCA 60.673 61.111 0.00 0.00 40.59 4.41
59 60 2.368821 CGGTTGGGGTATTCGGGGA 61.369 63.158 0.00 0.00 0.00 4.81
64 65 2.515290 CCGCCGGTTGGGGTATTC 60.515 66.667 1.90 0.00 46.46 1.75
96 97 0.397254 CTGTCGGACTAGGGTGGGAT 60.397 60.000 9.88 0.00 0.00 3.85
102 103 0.537188 ATTGCACTGTCGGACTAGGG 59.463 55.000 9.88 7.48 0.00 3.53
119 120 2.436646 CAGCCGCCGACAAGGATT 60.437 61.111 0.00 0.00 45.00 3.01
168 169 3.813150 GGAGCAGTTGTCCTCCCT 58.187 61.111 0.00 0.00 41.42 4.20
214 221 1.447489 CAGCGTGAGAGGGAAGCAG 60.447 63.158 0.00 0.00 0.00 4.24
262 275 2.101750 TCCTTGAGTACGTTGTGCAAGA 59.898 45.455 16.58 5.55 38.50 3.02
279 292 2.579201 CATCGCTGTCCCGTCCTT 59.421 61.111 0.00 0.00 0.00 3.36
310 330 0.533978 CGTCCCACAACACCATGACA 60.534 55.000 0.00 0.00 0.00 3.58
315 335 2.067605 AGTCCGTCCCACAACACCA 61.068 57.895 0.00 0.00 0.00 4.17
320 340 2.863346 CGTCCAGTCCGTCCCACAA 61.863 63.158 0.00 0.00 0.00 3.33
331 351 1.005569 TCACCCTAGATGTCGTCCAGT 59.994 52.381 0.00 0.00 0.00 4.00
419 453 3.564347 AACCCTTCGCCCTCCTCCT 62.564 63.158 0.00 0.00 0.00 3.69
443 477 5.104982 ACCCCGTCATAAATTGCATCAAATT 60.105 36.000 0.00 0.00 0.00 1.82
449 483 1.946768 CGACCCCGTCATAAATTGCAT 59.053 47.619 0.00 0.00 32.09 3.96
462 496 4.388499 CTTGTCACCCCGACCCCG 62.388 72.222 0.00 0.00 44.71 5.73
496 530 2.509336 CCTAGGCGCAACCAGACG 60.509 66.667 10.83 0.00 43.14 4.18
500 534 4.096003 GAGGCCTAGGCGCAACCA 62.096 66.667 27.24 0.00 43.14 3.67
521 555 2.609350 CAATTCAAATGTTGGGCGGAG 58.391 47.619 0.00 0.00 0.00 4.63
539 574 1.302431 CGCCACACCTCATGTCCAA 60.302 57.895 0.00 0.00 40.64 3.53
618 653 2.924926 CGTTCGATCATTACCGGTCAAA 59.075 45.455 12.40 0.00 0.00 2.69
626 661 0.850856 GGCGGACGTTCGATCATTAC 59.149 55.000 23.04 0.00 0.00 1.89
629 665 2.106332 GGGCGGACGTTCGATCAT 59.894 61.111 23.04 0.00 0.00 2.45
636 672 4.590522 AACGTTCGGGCGGACGTT 62.591 61.111 18.25 18.25 42.82 3.99
643 679 1.014564 CCTCTCTCAAACGTTCGGGC 61.015 60.000 0.00 0.00 0.00 6.13
648 684 3.467803 CCTCAAACCTCTCTCAAACGTT 58.532 45.455 0.00 0.00 0.00 3.99
653 689 0.320771 GCGCCTCAAACCTCTCTCAA 60.321 55.000 0.00 0.00 0.00 3.02
662 698 0.887387 TACAACCAGGCGCCTCAAAC 60.887 55.000 30.29 0.00 0.00 2.93
701 737 2.171659 TGGTTGAGCTGTGAACCAACTA 59.828 45.455 15.91 7.25 46.86 2.24
799 835 0.824759 GTCGGACTCTGCCATAAGGT 59.175 55.000 0.00 0.00 37.19 3.50
807 848 0.106819 TAGTAGGGGTCGGACTCTGC 60.107 60.000 8.12 9.44 0.00 4.26
846 888 5.669122 TCGTTTTTCGATTAAAAGGTCGTC 58.331 37.500 12.30 0.00 44.01 4.20
861 906 1.254313 GGTTTTGTGCGCTCGTTTTTC 59.746 47.619 9.73 0.00 0.00 2.29
876 926 1.178276 TGACACGCTGGTTTGGTTTT 58.822 45.000 0.00 0.00 0.00 2.43
970 1020 2.358125 TGTGCGATGGACGTTGGG 60.358 61.111 0.00 0.00 44.60 4.12
990 1040 0.037605 GGTAGGCCATCGAATACGGG 60.038 60.000 5.01 0.00 35.98 5.28
1074 1126 2.664081 CGCAGGGGGAGAAGAAGCT 61.664 63.158 0.00 0.00 0.00 3.74
1206 1258 5.359860 TCGGAGAAGAACATCAGTAGCAATA 59.640 40.000 0.00 0.00 0.00 1.90
1374 1450 1.597797 TTGGCGTACGGATCGGTCTT 61.598 55.000 18.39 0.00 0.00 3.01
1382 1458 2.048597 CACAGCTTGGCGTACGGA 60.049 61.111 18.39 0.00 0.00 4.69
1412 1488 0.737219 CGTCTTCGTCGGGGAAGTAT 59.263 55.000 13.56 0.00 43.10 2.12
1544 1620 1.345415 GACCGGAAGTGGTGGAAGTTA 59.655 52.381 9.46 0.00 44.01 2.24
1567 1643 4.524714 CCTCCGTGTCATATATGGTCTTCT 59.475 45.833 12.78 0.00 0.00 2.85
1575 1651 4.765856 GTGGTAGTCCTCCGTGTCATATAT 59.234 45.833 0.00 0.00 34.23 0.86
1577 1653 2.957006 GTGGTAGTCCTCCGTGTCATAT 59.043 50.000 0.00 0.00 34.23 1.78
1580 1656 0.178984 TGTGGTAGTCCTCCGTGTCA 60.179 55.000 0.00 0.00 34.23 3.58
1664 1916 6.019479 GCAAAGACCTCGTCAGATTACATAAG 60.019 42.308 0.00 0.00 34.60 1.73
1671 1923 2.613977 CCTGCAAAGACCTCGTCAGATT 60.614 50.000 0.00 0.00 34.60 2.40
1789 2043 1.579932 GAGCTCCAACGAGACGACA 59.420 57.895 0.87 0.00 38.52 4.35
1893 2149 3.169908 ACCCACAGAAGTTTGGTTTTGT 58.830 40.909 0.00 0.00 28.41 2.83
1915 2171 6.491745 ACAGGGAAAAACAAACCACAAAATTT 59.508 30.769 0.00 0.00 0.00 1.82
1921 2177 2.354203 GCACAGGGAAAAACAAACCACA 60.354 45.455 0.00 0.00 0.00 4.17
1924 2180 2.093711 ACTGCACAGGGAAAAACAAACC 60.094 45.455 2.21 0.00 0.00 3.27
1934 2190 1.915489 ACCATGATAACTGCACAGGGA 59.085 47.619 11.41 0.00 38.57 4.20
1935 2191 2.292267 GACCATGATAACTGCACAGGG 58.708 52.381 3.64 3.64 40.59 4.45
1953 2209 3.802948 AGTTACGACCATGATGAGGAC 57.197 47.619 0.00 0.00 0.00 3.85
1980 2236 6.369059 AGCATCAAGTGGAGAATATTTTCG 57.631 37.500 0.28 0.00 36.93 3.46
1981 2237 9.060347 TGATAGCATCAAGTGGAGAATATTTTC 57.940 33.333 0.00 0.00 36.11 2.29
2259 2516 2.545952 CGCATAGCTCCCGTCTACATTT 60.546 50.000 0.00 0.00 0.00 2.32
2277 2534 0.534877 ACCTCAGACAACATTGCGCA 60.535 50.000 5.66 5.66 0.00 6.09
2301 2558 4.452455 CCCACACTCTGATACAAGTTCAAC 59.548 45.833 0.00 0.00 0.00 3.18
2400 2657 7.496346 TCTCATGTAAACTTGATCCTAAGGT 57.504 36.000 0.00 0.00 31.01 3.50
2553 2810 3.672241 GCGATCCAACGGCTAAAAACATT 60.672 43.478 0.00 0.00 0.00 2.71
2702 2963 3.161866 TGACCTGGGCCTTTGATTTTAC 58.838 45.455 4.53 0.00 0.00 2.01
3011 3273 1.291877 GCTTGTTGAGCGACCGTCAT 61.292 55.000 0.00 0.00 42.46 3.06
3037 3300 0.835941 GAGGACAGCCAGTGATGGAT 59.164 55.000 0.00 0.00 36.29 3.41
3283 3549 1.610038 CAACTGAACTTGCCTGCATGA 59.390 47.619 11.46 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.