Multiple sequence alignment - TraesCS5B01G272400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G272400 chr5B 100.000 6210 0 0 1 6210 457959882 457966091 0.000000e+00 11468.0
1 TraesCS5B01G272400 chr5B 78.532 722 92 29 5100 5788 459560797 459560106 3.460000e-112 416.0
2 TraesCS5B01G272400 chr5B 80.155 388 35 17 5811 6180 457965096 457965459 1.030000e-62 252.0
3 TraesCS5B01G272400 chr5B 80.155 388 35 17 5215 5578 457965692 457966061 1.030000e-62 252.0
4 TraesCS5B01G272400 chr5B 82.288 271 33 4 5100 5365 457897130 457896870 2.910000e-53 220.0
5 TraesCS5B01G272400 chr5B 82.288 271 33 4 5100 5365 458041200 458041460 2.910000e-53 220.0
6 TraesCS5B01G272400 chr5B 93.750 96 3 3 3288 3380 34550253 34550348 2.330000e-29 141.0
7 TraesCS5B01G272400 chr5B 80.315 127 16 7 5206 5327 457975656 457975778 3.080000e-13 87.9
8 TraesCS5B01G272400 chr5A 94.338 2826 114 19 3379 6178 481931423 481928618 0.000000e+00 4290.0
9 TraesCS5B01G272400 chr5A 91.689 1119 56 13 855 1947 481933711 481932604 0.000000e+00 1517.0
10 TraesCS5B01G272400 chr5A 91.627 1039 42 10 2290 3297 481932446 481931422 0.000000e+00 1395.0
11 TraesCS5B01G272400 chr5A 89.552 134 5 5 2127 2251 481932592 481932459 1.790000e-35 161.0
12 TraesCS5B01G272400 chr5A 94.000 100 4 2 3289 3388 7109635 7109732 3.880000e-32 150.0
13 TraesCS5B01G272400 chr5A 94.624 93 4 1 3292 3383 504574274 504574366 6.490000e-30 143.0
14 TraesCS5B01G272400 chr5A 95.506 89 4 0 3295 3383 555623048 555622960 6.490000e-30 143.0
15 TraesCS5B01G272400 chr5D 95.686 1924 74 6 3380 5300 381819825 381817908 0.000000e+00 3085.0
16 TraesCS5B01G272400 chr5D 92.589 1120 51 12 837 1942 381822074 381820973 0.000000e+00 1580.0
17 TraesCS5B01G272400 chr5D 90.492 1178 49 27 2150 3297 381820970 381819826 0.000000e+00 1496.0
18 TraesCS5B01G272400 chr5D 93.274 788 42 6 1 777 33286198 33285411 0.000000e+00 1151.0
19 TraesCS5B01G272400 chr5D 92.474 784 45 5 1 780 442185553 442184780 0.000000e+00 1109.0
20 TraesCS5B01G272400 chr5D 91.043 681 27 11 5298 5956 381817785 381817117 0.000000e+00 889.0
21 TraesCS5B01G272400 chr5D 78.691 718 88 32 5100 5788 381726112 381725431 9.630000e-113 418.0
22 TraesCS5B01G272400 chr5D 98.810 168 2 0 1964 2131 48669130 48668963 3.640000e-77 300.0
23 TraesCS5B01G272400 chr5D 97.024 168 5 0 1961 2128 340690588 340690755 3.660000e-72 283.0
24 TraesCS5B01G272400 chr5D 97.041 169 4 1 1964 2132 539823223 539823390 3.660000e-72 283.0
25 TraesCS5B01G272400 chr5D 96.471 170 6 0 1963 2132 408752640 408752471 1.320000e-71 281.0
26 TraesCS5B01G272400 chr5D 94.048 168 9 1 6011 6178 381817109 381816943 2.870000e-63 254.0
27 TraesCS5B01G272400 chr5D 84.211 266 32 1 5100 5365 381812470 381812215 3.720000e-62 250.0
28 TraesCS5B01G272400 chr5D 77.719 377 49 22 5439 5788 381779688 381779320 1.370000e-46 198.0
29 TraesCS5B01G272400 chr5D 98.824 85 1 0 3296 3380 528967496 528967412 1.080000e-32 152.0
30 TraesCS5B01G272400 chr5D 89.815 108 11 0 3285 3392 458893941 458893834 8.390000e-29 139.0
31 TraesCS5B01G272400 chr5D 93.902 82 5 0 5100 5181 381807133 381807052 2.350000e-24 124.0
32 TraesCS5B01G272400 chr3B 98.839 775 7 1 1 773 770549300 770548526 0.000000e+00 1380.0
33 TraesCS5B01G272400 chr2D 94.260 784 33 9 1 773 398509175 398509957 0.000000e+00 1188.0
34 TraesCS5B01G272400 chr2D 93.920 773 38 6 8 773 618886390 618885620 0.000000e+00 1158.0
35 TraesCS5B01G272400 chr2D 97.590 166 4 0 1964 2129 445189990 445189825 1.020000e-72 285.0
36 TraesCS5B01G272400 chr2D 96.988 166 5 0 1963 2128 616968755 616968920 4.740000e-71 279.0
37 TraesCS5B01G272400 chr2D 93.548 93 6 0 3296 3388 43793328 43793236 8.390000e-29 139.0
38 TraesCS5B01G272400 chr3D 93.047 791 44 8 1 781 608917098 608916309 0.000000e+00 1146.0
39 TraesCS5B01G272400 chr3D 92.857 784 45 8 1 775 112579230 112580011 0.000000e+00 1127.0
40 TraesCS5B01G272400 chr3D 96.970 165 5 0 1964 2128 258242669 258242505 1.700000e-70 278.0
41 TraesCS5B01G272400 chr3D 97.647 85 2 0 3296 3380 393409052 393408968 5.020000e-31 147.0
42 TraesCS5B01G272400 chr3D 92.000 100 4 4 3290 3387 580028831 580028928 3.020000e-28 137.0
43 TraesCS5B01G272400 chr4D 92.902 789 43 9 1 778 77025178 77024392 0.000000e+00 1134.0
44 TraesCS5B01G272400 chr4D 92.443 794 48 5 1 784 386479579 386480370 0.000000e+00 1123.0
45 TraesCS5B01G272400 chr4D 96.471 85 2 1 3296 3380 509120689 509120772 8.390000e-29 139.0
46 TraesCS5B01G272400 chr4D 90.196 102 8 2 3279 3380 383781275 383781374 1.400000e-26 132.0
47 TraesCS5B01G272400 chr7D 92.695 794 43 10 7 792 94753219 94754005 0.000000e+00 1131.0
48 TraesCS5B01G272400 chr7D 97.024 168 5 0 1961 2128 237158606 237158773 3.660000e-72 283.0
49 TraesCS5B01G272400 chr2B 92.229 785 51 5 1 780 74695272 74696051 0.000000e+00 1103.0
50 TraesCS5B01G272400 chr3A 91.919 792 57 4 1 786 606737599 606738389 0.000000e+00 1101.0
51 TraesCS5B01G272400 chr1D 97.041 169 5 0 1964 2132 422051421 422051589 1.020000e-72 285.0
52 TraesCS5B01G272400 chr1D 93.814 97 5 1 3289 3384 291791951 291792047 1.800000e-30 145.0
53 TraesCS5B01G272400 chr1D 93.258 89 6 0 3292 3380 291792046 291791958 1.400000e-26 132.0
54 TraesCS5B01G272400 chr1D 91.579 95 7 1 3286 3380 80001394 80001487 5.050000e-26 130.0
55 TraesCS5B01G272400 chr7A 96.809 94 2 1 3290 3383 409259617 409259525 8.330000e-34 156.0
56 TraesCS5B01G272400 chr7A 95.745 94 4 0 3292 3385 386395054 386394961 1.080000e-32 152.0
57 TraesCS5B01G272400 chr7A 96.739 92 2 1 3290 3381 512440425 512440335 1.080000e-32 152.0
58 TraesCS5B01G272400 chr6D 98.824 85 1 0 3296 3380 144745028 144745112 1.080000e-32 152.0
59 TraesCS5B01G272400 chr6D 97.647 85 2 0 3296 3380 472749947 472750031 5.020000e-31 147.0
60 TraesCS5B01G272400 chr6D 95.402 87 4 0 3294 3380 16703141 16703055 8.390000e-29 139.0
61 TraesCS5B01G272400 chr6D 95.349 86 4 0 3296 3381 174620721 174620806 3.020000e-28 137.0
62 TraesCS5B01G272400 chr6D 94.382 89 2 3 3296 3381 13089811 13089723 3.910000e-27 134.0
63 TraesCS5B01G272400 chr6D 92.391 92 5 2 3291 3380 271737198 271737289 5.050000e-26 130.0
64 TraesCS5B01G272400 chr4A 97.727 88 2 0 3293 3380 483803192 483803105 1.080000e-32 152.0
65 TraesCS5B01G272400 chr4A 97.647 85 2 0 3296 3380 696211594 696211510 5.020000e-31 147.0
66 TraesCS5B01G272400 chr6B 97.647 85 2 0 3296 3380 390628813 390628729 5.020000e-31 147.0
67 TraesCS5B01G272400 chr4B 95.455 88 4 0 3296 3383 496549955 496549868 2.330000e-29 141.0
68 TraesCS5B01G272400 chr1A 94.505 91 5 0 3290 3380 90157097 90157187 2.330000e-29 141.0
69 TraesCS5B01G272400 chr1A 89.362 47 5 0 3572 3618 435402838 435402792 6.720000e-05 60.2
70 TraesCS5B01G272400 chr1A 89.130 46 5 0 4779 4824 300841559 300841604 2.420000e-04 58.4
71 TraesCS5B01G272400 chrUn 95.349 86 3 1 3296 3380 319453406 319453491 1.090000e-27 135.0
72 TraesCS5B01G272400 chrUn 94.118 85 5 0 3296 3380 42635330 42635414 5.050000e-26 130.0
73 TraesCS5B01G272400 chrUn 94.118 85 5 0 3296 3380 42892665 42892581 5.050000e-26 130.0
74 TraesCS5B01G272400 chrUn 94.118 85 5 0 3296 3380 367959356 367959440 5.050000e-26 130.0
75 TraesCS5B01G272400 chrUn 93.023 86 6 0 3296 3381 64964619 64964534 6.540000e-25 126.0
76 TraesCS5B01G272400 chrUn 91.304 92 7 1 3289 3380 320348001 320348091 2.350000e-24 124.0
77 TraesCS5B01G272400 chrUn 91.209 91 8 0 3290 3380 459903856 459903946 2.350000e-24 124.0
78 TraesCS5B01G272400 chrUn 91.209 91 8 0 3290 3380 460612431 460612341 2.350000e-24 124.0
79 TraesCS5B01G272400 chrUn 91.954 87 7 0 3295 3381 41678326 41678412 8.450000e-24 122.0
80 TraesCS5B01G272400 chrUn 90.323 93 9 0 3288 3380 364537872 364537780 8.450000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G272400 chr5B 457959882 457966091 6209 False 3990.666667 11468 86.7700 1 6210 3 chr5B.!!$F4 6209
1 TraesCS5B01G272400 chr5B 459560106 459560797 691 True 416.000000 416 78.5320 5100 5788 1 chr5B.!!$R2 688
2 TraesCS5B01G272400 chr5A 481928618 481933711 5093 True 1840.750000 4290 91.8015 855 6178 4 chr5A.!!$R2 5323
3 TraesCS5B01G272400 chr5D 381816943 381822074 5131 True 1460.800000 3085 92.7716 837 6178 5 chr5D.!!$R11 5341
4 TraesCS5B01G272400 chr5D 33285411 33286198 787 True 1151.000000 1151 93.2740 1 777 1 chr5D.!!$R1 776
5 TraesCS5B01G272400 chr5D 442184780 442185553 773 True 1109.000000 1109 92.4740 1 780 1 chr5D.!!$R8 779
6 TraesCS5B01G272400 chr5D 381725431 381726112 681 True 418.000000 418 78.6910 5100 5788 1 chr5D.!!$R3 688
7 TraesCS5B01G272400 chr3B 770548526 770549300 774 True 1380.000000 1380 98.8390 1 773 1 chr3B.!!$R1 772
8 TraesCS5B01G272400 chr2D 398509175 398509957 782 False 1188.000000 1188 94.2600 1 773 1 chr2D.!!$F1 772
9 TraesCS5B01G272400 chr2D 618885620 618886390 770 True 1158.000000 1158 93.9200 8 773 1 chr2D.!!$R3 765
10 TraesCS5B01G272400 chr3D 608916309 608917098 789 True 1146.000000 1146 93.0470 1 781 1 chr3D.!!$R3 780
11 TraesCS5B01G272400 chr3D 112579230 112580011 781 False 1127.000000 1127 92.8570 1 775 1 chr3D.!!$F1 774
12 TraesCS5B01G272400 chr4D 77024392 77025178 786 True 1134.000000 1134 92.9020 1 778 1 chr4D.!!$R1 777
13 TraesCS5B01G272400 chr4D 386479579 386480370 791 False 1123.000000 1123 92.4430 1 784 1 chr4D.!!$F2 783
14 TraesCS5B01G272400 chr7D 94753219 94754005 786 False 1131.000000 1131 92.6950 7 792 1 chr7D.!!$F1 785
15 TraesCS5B01G272400 chr2B 74695272 74696051 779 False 1103.000000 1103 92.2290 1 780 1 chr2B.!!$F1 779
16 TraesCS5B01G272400 chr3A 606737599 606738389 790 False 1101.000000 1101 91.9190 1 786 1 chr3A.!!$F1 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 848 0.452184 TCAGGCGAGAGAAAGCTACG 59.548 55.000 0.00 0.00 0.00 3.51 F
1430 1494 0.107456 CTGGACTTCTGGTGCACTGT 59.893 55.000 17.98 8.11 41.27 3.55 F
2541 2657 0.036010 AGAAGGTCCAAGTGCGGATG 60.036 55.000 0.00 0.00 37.41 3.51 F
2542 2658 1.002134 AAGGTCCAAGTGCGGATGG 60.002 57.895 0.00 0.00 37.41 3.51 F
3776 3922 0.449388 CGGCATTGGCTTGAAGACTC 59.551 55.000 8.71 0.00 40.87 3.36 F
4854 5001 0.103026 TCATCGAGAATGCAGGGTCG 59.897 55.000 7.80 7.80 35.17 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1725 0.384230 CAACAAGGTACACGCTTGCG 60.384 55.000 13.70 13.70 31.64 4.85 R
2958 3102 0.540365 ACATGGGTCCAAGCTTGTGG 60.540 55.000 24.35 11.97 40.33 4.17 R
3757 3903 0.449388 GAGTCTTCAAGCCAATGCCG 59.551 55.000 0.00 0.00 38.69 5.69 R
3878 4024 1.211703 TGTTGCCACCTCTGAAGACAA 59.788 47.619 0.00 0.00 0.00 3.18 R
4917 5064 0.678048 GGCCCAAGGTAGAGCAACTG 60.678 60.000 0.00 0.00 0.00 3.16 R
5900 6228 0.031111 TGGCCCTGCTACCTCATAGT 60.031 55.000 0.00 0.00 32.90 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 170 1.579808 CGAGCGTTCTTGATTCTCGAC 59.420 52.381 4.17 0.00 46.59 4.20
697 731 5.446143 AAAAATGTCGCCAATGTCACTTA 57.554 34.783 0.00 0.00 0.00 2.24
782 819 6.162079 GGGCGTTCTTCTAGTAAAAGTAGTT 58.838 40.000 0.00 0.00 0.00 2.24
783 820 7.315890 GGGCGTTCTTCTAGTAAAAGTAGTTA 58.684 38.462 0.00 0.00 0.00 2.24
784 821 7.274468 GGGCGTTCTTCTAGTAAAAGTAGTTAC 59.726 40.741 0.00 0.00 34.72 2.50
785 822 8.026026 GGCGTTCTTCTAGTAAAAGTAGTTACT 58.974 37.037 3.35 3.35 44.57 2.24
786 823 9.060547 GCGTTCTTCTAGTAAAAGTAGTTACTC 57.939 37.037 1.06 0.00 42.14 2.59
796 833 9.016438 AGTAAAAGTAGTTACTCTCTCTTCAGG 57.984 37.037 0.00 0.00 39.60 3.86
797 834 5.907866 AAGTAGTTACTCTCTCTTCAGGC 57.092 43.478 0.00 0.00 34.99 4.85
798 835 3.942748 AGTAGTTACTCTCTCTTCAGGCG 59.057 47.826 0.00 0.00 0.00 5.52
799 836 3.074675 AGTTACTCTCTCTTCAGGCGA 57.925 47.619 0.00 0.00 0.00 5.54
800 837 3.013921 AGTTACTCTCTCTTCAGGCGAG 58.986 50.000 0.00 0.00 0.00 5.03
801 838 3.011119 GTTACTCTCTCTTCAGGCGAGA 58.989 50.000 0.00 0.00 36.22 4.04
807 844 1.203523 TCTCTTCAGGCGAGAGAAAGC 59.796 52.381 13.41 0.00 44.85 3.51
808 845 1.204467 CTCTTCAGGCGAGAGAAAGCT 59.796 52.381 9.13 0.00 42.57 3.74
809 846 2.425312 CTCTTCAGGCGAGAGAAAGCTA 59.575 50.000 9.13 0.00 42.57 3.32
810 847 2.164624 TCTTCAGGCGAGAGAAAGCTAC 59.835 50.000 0.00 0.00 0.00 3.58
811 848 0.452184 TCAGGCGAGAGAAAGCTACG 59.548 55.000 0.00 0.00 0.00 3.51
812 849 0.526524 CAGGCGAGAGAAAGCTACGG 60.527 60.000 0.00 0.00 0.00 4.02
813 850 0.966370 AGGCGAGAGAAAGCTACGGT 60.966 55.000 0.00 0.00 0.00 4.83
814 851 0.525882 GGCGAGAGAAAGCTACGGTC 60.526 60.000 0.00 0.00 0.00 4.79
815 852 0.452585 GCGAGAGAAAGCTACGGTCT 59.547 55.000 0.00 0.00 0.00 3.85
816 853 1.532298 GCGAGAGAAAGCTACGGTCTC 60.532 57.143 8.03 8.03 38.46 3.36
817 854 2.461897 GAGAGAAAGCTACGGTCTCG 57.538 55.000 9.65 0.00 42.18 4.04
818 855 0.452585 AGAGAAAGCTACGGTCTCGC 59.547 55.000 9.65 0.00 42.18 5.03
819 856 0.862283 GAGAAAGCTACGGTCTCGCG 60.862 60.000 0.00 0.00 40.63 5.87
820 857 2.506345 GAAAGCTACGGTCTCGCGC 61.506 63.158 0.00 0.00 40.63 6.86
821 858 3.984200 AAAGCTACGGTCTCGCGCC 62.984 63.158 0.00 0.00 40.63 6.53
845 882 0.932585 GAGACATAGCTCTCGTGCGC 60.933 60.000 0.00 0.00 38.13 6.09
853 890 1.278849 GCTCTCGTGCGCTATAAGCC 61.279 60.000 9.73 0.00 38.18 4.35
924 961 4.104696 ACGAAAAGGCCCAATAAAATCG 57.895 40.909 0.00 1.26 0.00 3.34
1105 1151 0.324183 TGGTGAGGCCTCTCTCTCTG 60.324 60.000 32.28 0.00 40.58 3.35
1106 1152 1.675720 GGTGAGGCCTCTCTCTCTGC 61.676 65.000 32.28 11.93 40.58 4.26
1107 1153 0.684153 GTGAGGCCTCTCTCTCTGCT 60.684 60.000 32.28 0.00 40.58 4.24
1108 1154 0.395586 TGAGGCCTCTCTCTCTGCTC 60.396 60.000 32.28 3.67 40.58 4.26
1109 1155 1.447317 GAGGCCTCTCTCTCTGCTCG 61.447 65.000 26.25 0.00 37.07 5.03
1205 1268 6.127451 GGTTCCTTTTCCAGAAGAACAAAAGA 60.127 38.462 11.05 0.00 37.84 2.52
1214 1277 5.750547 CCAGAAGAACAAAAGAAAAAGGAGC 59.249 40.000 0.00 0.00 0.00 4.70
1272 1335 4.374399 CAACTACGCGGTTAGGGATTAAT 58.626 43.478 12.47 0.00 36.53 1.40
1279 1342 4.024302 CGCGGTTAGGGATTAATCCTTTTC 60.024 45.833 29.24 18.72 46.35 2.29
1409 1473 2.079158 CACTCGCAGATGGTTGAATGT 58.921 47.619 0.00 0.00 33.89 2.71
1410 1474 2.485426 CACTCGCAGATGGTTGAATGTT 59.515 45.455 0.00 0.00 33.89 2.71
1411 1475 2.744202 ACTCGCAGATGGTTGAATGTTC 59.256 45.455 0.00 0.00 33.89 3.18
1412 1476 3.005554 CTCGCAGATGGTTGAATGTTCT 58.994 45.455 0.00 0.00 33.89 3.01
1413 1477 2.743664 TCGCAGATGGTTGAATGTTCTG 59.256 45.455 0.00 0.00 37.47 3.02
1414 1478 2.159476 CGCAGATGGTTGAATGTTCTGG 60.159 50.000 0.00 0.00 35.47 3.86
1415 1479 3.084039 GCAGATGGTTGAATGTTCTGGA 58.916 45.455 0.00 0.00 35.47 3.86
1416 1480 3.119708 GCAGATGGTTGAATGTTCTGGAC 60.120 47.826 0.00 0.00 35.47 4.02
1430 1494 0.107456 CTGGACTTCTGGTGCACTGT 59.893 55.000 17.98 8.11 41.27 3.55
1504 1568 5.960113 TGATGGGTAAAATCAATTGTTCCG 58.040 37.500 5.13 0.00 31.17 4.30
1538 1602 2.030027 AATGTGTGAGACTGGGGAGA 57.970 50.000 0.00 0.00 0.00 3.71
1635 1700 4.646945 TCTTGTGTAAAAGTTGGATGCCAA 59.353 37.500 0.00 0.00 41.69 4.52
1646 1711 2.789213 TGGATGCCAAGTCGAAATTGA 58.211 42.857 12.06 0.00 0.00 2.57
1656 1722 5.810074 CCAAGTCGAAATTGAACCTTTGTTT 59.190 36.000 12.06 0.00 33.97 2.83
1659 1725 7.980742 AGTCGAAATTGAACCTTTGTTTTAC 57.019 32.000 0.00 0.00 33.97 2.01
1665 1731 3.440228 TGAACCTTTGTTTTACGCAAGC 58.560 40.909 0.00 0.00 35.99 4.01
1709 1776 6.040247 TCTGTTAGCATGTGTCCTTATAACG 58.960 40.000 0.00 0.00 0.00 3.18
1892 1959 2.353958 CCATCACTGCCCTGCTGT 59.646 61.111 0.00 0.00 41.16 4.40
1902 1970 3.387699 ACTGCCCTGCTGTACAAATTTTT 59.612 39.130 0.00 0.00 38.85 1.94
1957 2062 7.693969 TCCTGTGTTAGTAAGTAGTAACTCC 57.306 40.000 14.26 7.84 40.83 3.85
1958 2063 7.465116 TCCTGTGTTAGTAAGTAGTAACTCCT 58.535 38.462 14.26 0.00 40.83 3.69
1959 2064 7.609532 TCCTGTGTTAGTAAGTAGTAACTCCTC 59.390 40.741 14.26 6.16 40.83 3.71
1960 2065 7.611079 CCTGTGTTAGTAAGTAGTAACTCCTCT 59.389 40.741 14.26 0.00 40.83 3.69
1961 2066 8.930846 TGTGTTAGTAAGTAGTAACTCCTCTT 57.069 34.615 14.26 0.00 40.83 2.85
1962 2067 9.007901 TGTGTTAGTAAGTAGTAACTCCTCTTC 57.992 37.037 14.26 2.18 40.83 2.87
1963 2068 9.230122 GTGTTAGTAAGTAGTAACTCCTCTTCT 57.770 37.037 14.26 0.00 40.83 2.85
1968 2073 8.267183 AGTAAGTAGTAACTCCTCTTCTACTCC 58.733 40.741 0.00 0.00 39.86 3.85
1969 2074 6.005066 AGTAGTAACTCCTCTTCTACTCCC 57.995 45.833 0.00 0.00 37.37 4.30
1970 2075 5.732661 AGTAGTAACTCCTCTTCTACTCCCT 59.267 44.000 0.00 0.00 37.37 4.20
1971 2076 5.120054 AGTAACTCCTCTTCTACTCCCTC 57.880 47.826 0.00 0.00 0.00 4.30
1972 2077 3.391799 AACTCCTCTTCTACTCCCTCC 57.608 52.381 0.00 0.00 0.00 4.30
1973 2078 1.213430 ACTCCTCTTCTACTCCCTCCG 59.787 57.143 0.00 0.00 0.00 4.63
1974 2079 1.213430 CTCCTCTTCTACTCCCTCCGT 59.787 57.143 0.00 0.00 0.00 4.69
1975 2080 1.639628 TCCTCTTCTACTCCCTCCGTT 59.360 52.381 0.00 0.00 0.00 4.44
1976 2081 2.025898 CCTCTTCTACTCCCTCCGTTC 58.974 57.143 0.00 0.00 0.00 3.95
1977 2082 2.025898 CTCTTCTACTCCCTCCGTTCC 58.974 57.143 0.00 0.00 0.00 3.62
1978 2083 1.356738 TCTTCTACTCCCTCCGTTCCA 59.643 52.381 0.00 0.00 0.00 3.53
1979 2084 2.176889 CTTCTACTCCCTCCGTTCCAA 58.823 52.381 0.00 0.00 0.00 3.53
1980 2085 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
1981 2086 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
1982 2087 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
1983 2088 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
1984 2089 4.966805 TCTACTCCCTCCGTTCCAAAATAT 59.033 41.667 0.00 0.00 0.00 1.28
1985 2090 6.138263 TCTACTCCCTCCGTTCCAAAATATA 58.862 40.000 0.00 0.00 0.00 0.86
1986 2091 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
1987 2092 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
1988 2093 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
1989 2094 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
1990 2095 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
1991 2096 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
1992 2097 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
1993 2098 7.122204 CCCTCCGTTCCAAAATATAAGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
1994 2099 8.520351 CCTCCGTTCCAAAATATAAGTCTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
2012 2117 9.396022 AGTCTTTTTAGAGATTTCAACAAGTGA 57.604 29.630 0.00 0.00 0.00 3.41
2013 2118 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
2014 2119 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
2017 2122 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
2018 2123 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
2020 2125 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2021 2126 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2022 2127 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2023 2128 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2024 2129 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2025 2130 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
2026 2131 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
2027 2132 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
2028 2133 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
2029 2134 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
2030 2135 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
2031 2136 7.601130 ACAAGTGACTACATACGAAGCAAAATA 59.399 33.333 0.00 0.00 0.00 1.40
2032 2137 8.440059 CAAGTGACTACATACGAAGCAAAATAA 58.560 33.333 0.00 0.00 0.00 1.40
2033 2138 8.186178 AGTGACTACATACGAAGCAAAATAAG 57.814 34.615 0.00 0.00 0.00 1.73
2034 2139 7.817962 AGTGACTACATACGAAGCAAAATAAGT 59.182 33.333 0.00 0.00 0.00 2.24
2035 2140 7.898309 GTGACTACATACGAAGCAAAATAAGTG 59.102 37.037 0.00 0.00 0.00 3.16
2036 2141 7.815549 TGACTACATACGAAGCAAAATAAGTGA 59.184 33.333 0.00 0.00 0.00 3.41
2037 2142 8.542497 ACTACATACGAAGCAAAATAAGTGAA 57.458 30.769 0.00 0.00 0.00 3.18
2038 2143 9.162764 ACTACATACGAAGCAAAATAAGTGAAT 57.837 29.630 0.00 0.00 0.00 2.57
2039 2144 9.638300 CTACATACGAAGCAAAATAAGTGAATC 57.362 33.333 0.00 0.00 0.00 2.52
2040 2145 8.268850 ACATACGAAGCAAAATAAGTGAATCT 57.731 30.769 0.00 0.00 0.00 2.40
2041 2146 9.378551 ACATACGAAGCAAAATAAGTGAATCTA 57.621 29.630 0.00 0.00 0.00 1.98
2045 2150 9.601217 ACGAAGCAAAATAAGTGAATCTATACT 57.399 29.630 0.00 0.00 0.00 2.12
2084 2189 7.962964 CATACATCCGTATGTTTTAGTCCAT 57.037 36.000 0.00 0.00 46.70 3.41
2085 2190 8.378172 CATACATCCGTATGTTTTAGTCCATT 57.622 34.615 0.00 0.00 46.70 3.16
2086 2191 8.836413 CATACATCCGTATGTTTTAGTCCATTT 58.164 33.333 0.00 0.00 46.70 2.32
2087 2192 7.083875 ACATCCGTATGTTTTAGTCCATTTG 57.916 36.000 0.00 0.00 44.07 2.32
2088 2193 6.882140 ACATCCGTATGTTTTAGTCCATTTGA 59.118 34.615 0.00 0.00 44.07 2.69
2089 2194 7.392113 ACATCCGTATGTTTTAGTCCATTTGAA 59.608 33.333 0.00 0.00 44.07 2.69
2090 2195 7.747155 TCCGTATGTTTTAGTCCATTTGAAA 57.253 32.000 0.00 0.00 0.00 2.69
2091 2196 8.343168 TCCGTATGTTTTAGTCCATTTGAAAT 57.657 30.769 0.00 0.00 0.00 2.17
2092 2197 8.240682 TCCGTATGTTTTAGTCCATTTGAAATG 58.759 33.333 10.84 10.84 0.00 2.32
2093 2198 8.026607 CCGTATGTTTTAGTCCATTTGAAATGT 58.973 33.333 15.93 1.43 0.00 2.71
2094 2199 9.061610 CGTATGTTTTAGTCCATTTGAAATGTC 57.938 33.333 15.93 9.10 0.00 3.06
2104 2209 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
2105 2210 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
2122 2227 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2123 2228 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2124 2229 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2125 2230 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2126 2231 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2127 2232 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2128 2233 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2129 2234 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
2130 2235 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
2131 2236 5.767277 TTTAGGAACGGAGGGAGTATTTT 57.233 39.130 0.00 0.00 0.00 1.82
2132 2237 6.872585 TTTAGGAACGGAGGGAGTATTTTA 57.127 37.500 0.00 0.00 0.00 1.52
2133 2238 4.750021 AGGAACGGAGGGAGTATTTTAC 57.250 45.455 0.00 0.00 0.00 2.01
2134 2239 4.098894 AGGAACGGAGGGAGTATTTTACA 58.901 43.478 0.00 0.00 0.00 2.41
2135 2240 4.533311 AGGAACGGAGGGAGTATTTTACAA 59.467 41.667 0.00 0.00 0.00 2.41
2136 2241 5.013391 AGGAACGGAGGGAGTATTTTACAAA 59.987 40.000 0.00 0.00 0.00 2.83
2137 2242 5.353400 GGAACGGAGGGAGTATTTTACAAAG 59.647 44.000 0.00 0.00 0.00 2.77
2138 2243 4.840271 ACGGAGGGAGTATTTTACAAAGG 58.160 43.478 0.00 0.00 0.00 3.11
2139 2244 4.196971 CGGAGGGAGTATTTTACAAAGGG 58.803 47.826 0.00 0.00 0.00 3.95
2140 2245 4.533815 GGAGGGAGTATTTTACAAAGGGG 58.466 47.826 0.00 0.00 0.00 4.79
2141 2246 4.228895 GGAGGGAGTATTTTACAAAGGGGA 59.771 45.833 0.00 0.00 0.00 4.81
2142 2247 5.281349 GGAGGGAGTATTTTACAAAGGGGAA 60.281 44.000 0.00 0.00 0.00 3.97
2143 2248 6.222227 AGGGAGTATTTTACAAAGGGGAAA 57.778 37.500 0.00 0.00 0.00 3.13
2144 2249 6.253758 AGGGAGTATTTTACAAAGGGGAAAG 58.746 40.000 0.00 0.00 0.00 2.62
2145 2250 6.046286 AGGGAGTATTTTACAAAGGGGAAAGA 59.954 38.462 0.00 0.00 0.00 2.52
2146 2251 6.895756 GGGAGTATTTTACAAAGGGGAAAGAT 59.104 38.462 0.00 0.00 0.00 2.40
2147 2252 7.399191 GGGAGTATTTTACAAAGGGGAAAGATT 59.601 37.037 0.00 0.00 0.00 2.40
2148 2253 8.251026 GGAGTATTTTACAAAGGGGAAAGATTG 58.749 37.037 0.00 0.00 0.00 2.67
2168 2273 4.599047 TGATGTTGGGGCTTTAACTTTG 57.401 40.909 0.00 0.00 0.00 2.77
2186 2291 4.156008 ACTTTGTGGAAAACTGTCTGTCAC 59.844 41.667 0.00 0.00 0.00 3.67
2196 2301 0.673985 TGTCTGTCACGAGTCTTGGG 59.326 55.000 0.00 0.00 0.00 4.12
2259 2373 6.973229 GCAATTCCTTGTGCTTCATTTATT 57.027 33.333 0.00 0.00 37.78 1.40
2260 2374 6.768078 GCAATTCCTTGTGCTTCATTTATTG 58.232 36.000 0.00 0.00 37.78 1.90
2262 2376 7.622672 GCAATTCCTTGTGCTTCATTTATTGTG 60.623 37.037 0.00 0.00 37.78 3.33
2263 2377 6.647334 TTCCTTGTGCTTCATTTATTGTGA 57.353 33.333 0.00 0.00 0.00 3.58
2264 2378 6.839124 TCCTTGTGCTTCATTTATTGTGAT 57.161 33.333 0.00 0.00 0.00 3.06
2267 2381 7.039853 TCCTTGTGCTTCATTTATTGTGATTGA 60.040 33.333 0.00 0.00 0.00 2.57
2268 2382 7.762615 CCTTGTGCTTCATTTATTGTGATTGAT 59.237 33.333 0.00 0.00 0.00 2.57
2269 2383 8.468720 TTGTGCTTCATTTATTGTGATTGATG 57.531 30.769 0.00 0.00 0.00 3.07
2270 2384 7.604549 TGTGCTTCATTTATTGTGATTGATGT 58.395 30.769 0.00 0.00 0.00 3.06
2271 2385 7.542824 TGTGCTTCATTTATTGTGATTGATGTG 59.457 33.333 0.00 0.00 0.00 3.21
2288 2402 6.985188 TGATGTGTTTTAGCTACAATCTCC 57.015 37.500 0.00 0.00 0.00 3.71
2333 2447 5.720202 TCTTATTGTGTGACTTGTCGCTAT 58.280 37.500 14.24 8.40 0.00 2.97
2391 2505 1.203994 GCCACTCTTGCTACCGTCTAA 59.796 52.381 0.00 0.00 0.00 2.10
2398 2512 1.226888 GCTACCGTCTAACGCCTGG 60.227 63.158 0.00 0.00 40.91 4.45
2413 2527 1.549170 GCCTGGGTGTATATCTACCGG 59.451 57.143 0.00 0.00 37.85 5.28
2420 2534 6.258354 TGGGTGTATATCTACCGGAATACAT 58.742 40.000 9.46 0.00 37.22 2.29
2421 2535 6.153851 TGGGTGTATATCTACCGGAATACATG 59.846 42.308 9.46 0.00 37.22 3.21
2458 2572 1.523711 ACCTCGTGGGCAATATGCG 60.524 57.895 8.63 0.00 46.21 4.73
2461 2575 1.498865 CTCGTGGGCAATATGCGTCC 61.499 60.000 0.00 0.00 46.21 4.79
2534 2650 7.390718 GTCATTTAACATGTAGAAGGTCCAAGT 59.609 37.037 0.00 0.00 0.00 3.16
2535 2651 7.390440 TCATTTAACATGTAGAAGGTCCAAGTG 59.610 37.037 0.00 0.00 0.00 3.16
2536 2652 3.059352 ACATGTAGAAGGTCCAAGTGC 57.941 47.619 0.00 0.00 0.00 4.40
2537 2653 2.002586 CATGTAGAAGGTCCAAGTGCG 58.997 52.381 0.00 0.00 0.00 5.34
2538 2654 0.320374 TGTAGAAGGTCCAAGTGCGG 59.680 55.000 0.00 0.00 0.00 5.69
2539 2655 0.606604 GTAGAAGGTCCAAGTGCGGA 59.393 55.000 0.00 0.00 0.00 5.54
2540 2656 1.207329 GTAGAAGGTCCAAGTGCGGAT 59.793 52.381 0.00 0.00 37.41 4.18
2541 2657 0.036010 AGAAGGTCCAAGTGCGGATG 60.036 55.000 0.00 0.00 37.41 3.51
2542 2658 1.002134 AAGGTCCAAGTGCGGATGG 60.002 57.895 0.00 0.00 37.41 3.51
2557 2673 3.278574 CGGATGGACTGGCTGAAAATTA 58.721 45.455 0.00 0.00 0.00 1.40
2566 2682 7.148086 TGGACTGGCTGAAAATTATAATGTCAC 60.148 37.037 0.00 2.39 0.00 3.67
2656 2772 2.263077 GTGCAGTAGACACCATTCGAG 58.737 52.381 0.00 0.00 31.67 4.04
2958 3102 7.088589 AGTAACATGATTAAACCATGAGCAC 57.911 36.000 21.00 15.69 42.89 4.40
2993 3137 5.693961 ACCCATGTCAAATATGCATACTCA 58.306 37.500 8.99 4.79 0.00 3.41
3060 3205 6.053650 ACTTAACACAAGTGGGACTTTACTC 58.946 40.000 5.08 0.00 36.03 2.59
3075 3220 7.829706 GGGACTTTACTCCACTCTTGAATATTT 59.170 37.037 0.00 0.00 30.97 1.40
3101 3246 4.721776 TCCTATAATCAGGTTCCTGCAAGT 59.278 41.667 13.44 0.54 36.99 3.16
3110 3255 3.321968 AGGTTCCTGCAAGTCCAAATTTC 59.678 43.478 0.00 0.00 0.00 2.17
3122 3267 7.631161 GCAAGTCCAAATTTCATATGTGATCCA 60.631 37.037 1.90 0.00 33.56 3.41
3131 3276 2.988010 TATGTGATCCACCTGCAGTC 57.012 50.000 13.81 3.48 32.73 3.51
3235 3380 4.776349 TCTCAGTTACCATGTTGTGTGTT 58.224 39.130 0.00 0.00 0.00 3.32
3297 3442 8.840321 TGAGCTTTCTGGCTGATTAAATATTAC 58.160 33.333 0.00 0.00 43.20 1.89
3298 3443 8.986929 AGCTTTCTGGCTGATTAAATATTACT 57.013 30.769 0.00 0.00 41.43 2.24
3299 3444 9.061435 AGCTTTCTGGCTGATTAAATATTACTC 57.939 33.333 0.00 0.00 41.43 2.59
3300 3445 8.293157 GCTTTCTGGCTGATTAAATATTACTCC 58.707 37.037 0.00 0.00 0.00 3.85
3301 3446 8.691661 TTTCTGGCTGATTAAATATTACTCCC 57.308 34.615 0.00 0.00 0.00 4.30
3302 3447 7.633018 TCTGGCTGATTAAATATTACTCCCT 57.367 36.000 0.00 0.00 0.00 4.20
3303 3448 7.680730 TCTGGCTGATTAAATATTACTCCCTC 58.319 38.462 0.00 0.00 0.00 4.30
3304 3449 6.779860 TGGCTGATTAAATATTACTCCCTCC 58.220 40.000 0.00 0.00 0.00 4.30
3305 3450 5.875359 GGCTGATTAAATATTACTCCCTCCG 59.125 44.000 0.00 0.00 0.00 4.63
3306 3451 6.465084 GCTGATTAAATATTACTCCCTCCGT 58.535 40.000 0.00 0.00 0.00 4.69
3307 3452 6.590677 GCTGATTAAATATTACTCCCTCCGTC 59.409 42.308 0.00 0.00 0.00 4.79
3308 3453 7.001099 TGATTAAATATTACTCCCTCCGTCC 57.999 40.000 0.00 0.00 0.00 4.79
3309 3454 5.813513 TTAAATATTACTCCCTCCGTCCC 57.186 43.478 0.00 0.00 0.00 4.46
3310 3455 3.339713 AATATTACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
3311 3456 2.852714 TATTACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3312 3457 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3313 3458 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
3314 3459 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3315 3460 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3316 3461 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
3317 3462 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
3318 3463 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
3319 3464 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
3320 3465 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
3321 3466 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
3322 3467 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
3323 3468 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
3324 3469 4.444536 TCCGTCCCAAAATATAAGAACGG 58.555 43.478 4.33 4.33 38.24 4.44
3325 3470 4.080975 TCCGTCCCAAAATATAAGAACGGT 60.081 41.667 10.03 0.00 38.10 4.83
3326 3471 4.637091 CCGTCCCAAAATATAAGAACGGTT 59.363 41.667 0.00 0.00 33.04 4.44
3327 3472 5.124297 CCGTCCCAAAATATAAGAACGGTTT 59.876 40.000 0.00 0.00 33.04 3.27
3328 3473 6.349528 CCGTCCCAAAATATAAGAACGGTTTT 60.350 38.462 0.00 0.00 33.04 2.43
3329 3474 7.085746 CGTCCCAAAATATAAGAACGGTTTTT 58.914 34.615 2.09 2.09 0.00 1.94
3330 3475 8.235905 CGTCCCAAAATATAAGAACGGTTTTTA 58.764 33.333 6.36 6.36 0.00 1.52
3331 3476 9.345517 GTCCCAAAATATAAGAACGGTTTTTAC 57.654 33.333 6.06 0.00 0.00 2.01
3332 3477 9.075678 TCCCAAAATATAAGAACGGTTTTTACA 57.924 29.630 6.06 0.00 0.00 2.41
3333 3478 9.131416 CCCAAAATATAAGAACGGTTTTTACAC 57.869 33.333 6.06 0.00 0.00 2.90
3334 3479 9.902196 CCAAAATATAAGAACGGTTTTTACACT 57.098 29.630 6.06 0.00 0.00 3.55
3366 3511 9.458374 AGTGTCAAAAACGTTCTTATATTTTGG 57.542 29.630 15.53 0.00 39.94 3.28
3367 3512 8.696175 GTGTCAAAAACGTTCTTATATTTTGGG 58.304 33.333 15.53 0.00 39.94 4.12
3368 3513 8.630917 TGTCAAAAACGTTCTTATATTTTGGGA 58.369 29.630 15.53 4.35 39.94 4.37
3369 3514 8.908678 GTCAAAAACGTTCTTATATTTTGGGAC 58.091 33.333 15.53 7.20 39.94 4.46
3370 3515 8.630917 TCAAAAACGTTCTTATATTTTGGGACA 58.369 29.630 15.53 0.00 39.94 4.02
3371 3516 8.911662 CAAAAACGTTCTTATATTTTGGGACAG 58.088 33.333 0.00 0.00 42.39 3.51
3372 3517 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
3373 3518 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
3374 3519 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
3375 3520 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
3376 3521 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
3377 3522 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
3378 3523 5.970640 TCTTATATTTTGGGACAGAGGGAGT 59.029 40.000 0.00 0.00 42.39 3.85
3442 3587 7.169645 TGCTGTTTCTTTGCACATTATTTTCTC 59.830 33.333 0.00 0.00 0.00 2.87
3445 3590 6.662865 TTCTTTGCACATTATTTTCTCCCA 57.337 33.333 0.00 0.00 0.00 4.37
3447 3592 6.454795 TCTTTGCACATTATTTTCTCCCAAC 58.545 36.000 0.00 0.00 0.00 3.77
3448 3593 4.433186 TGCACATTATTTTCTCCCAACG 57.567 40.909 0.00 0.00 0.00 4.10
3449 3594 4.075682 TGCACATTATTTTCTCCCAACGA 58.924 39.130 0.00 0.00 0.00 3.85
3451 3596 5.184864 TGCACATTATTTTCTCCCAACGAAT 59.815 36.000 0.00 0.00 0.00 3.34
3452 3597 5.743872 GCACATTATTTTCTCCCAACGAATC 59.256 40.000 0.00 0.00 0.00 2.52
3453 3598 6.624861 GCACATTATTTTCTCCCAACGAATCA 60.625 38.462 0.00 0.00 0.00 2.57
3493 3639 8.940397 TTTTTCTTCTCCTTTCCATAGTCAAT 57.060 30.769 0.00 0.00 0.00 2.57
3494 3640 8.940397 TTTTCTTCTCCTTTCCATAGTCAATT 57.060 30.769 0.00 0.00 0.00 2.32
3498 3644 8.041323 TCTTCTCCTTTCCATAGTCAATTGTAC 58.959 37.037 5.13 2.82 0.00 2.90
3533 3679 5.468746 TCGGAAATCCAGTGTTTAACTCTTG 59.531 40.000 0.00 0.00 36.83 3.02
3543 3689 5.594317 AGTGTTTAACTCTTGAATGCTTGGT 59.406 36.000 0.00 0.00 31.64 3.67
3547 3693 7.446931 TGTTTAACTCTTGAATGCTTGGTCATA 59.553 33.333 0.00 0.00 0.00 2.15
3649 3795 1.804601 GTTGTTGGAGGTTCTACCCG 58.195 55.000 0.00 0.00 39.75 5.28
3679 3825 6.182627 TGGATTTAGTAACTCGACTGTAGGA 58.817 40.000 0.00 0.00 0.00 2.94
3757 3903 3.699538 ACCAAGTTCTGAAAAACCACTCC 59.300 43.478 0.00 0.00 0.00 3.85
3776 3922 0.449388 CGGCATTGGCTTGAAGACTC 59.551 55.000 8.71 0.00 40.87 3.36
3811 3957 0.611618 TTGGCCACAATTCCAGCGAT 60.612 50.000 3.88 0.00 33.32 4.58
3869 4015 3.775202 ACATCGGAGATTGAAGAACTCG 58.225 45.455 0.00 0.00 45.12 4.18
3878 4024 3.695830 TTGAAGAACTCGGCCTTATGT 57.304 42.857 0.00 0.00 0.00 2.29
4245 4391 6.436532 TCCAGTTTTTACTTTGGTGGTAAACA 59.563 34.615 0.00 0.00 38.39 2.83
4290 4436 6.752168 AGCAATTGAAGAACTTAACAATGCT 58.248 32.000 10.34 0.00 35.10 3.79
4299 4445 3.156293 ACTTAACAATGCTGCATCCACA 58.844 40.909 16.55 0.00 0.00 4.17
4329 4475 1.480789 AATGCTCATGCCATGCTTCA 58.519 45.000 0.00 0.00 38.71 3.02
4339 4485 4.327982 TGCCATGCTTCAGACTACTATC 57.672 45.455 0.00 0.00 0.00 2.08
4447 4593 7.558161 TGCTTGACAATTAACCTGAGATATG 57.442 36.000 0.00 0.00 0.00 1.78
4497 4643 2.233271 CATAGCCAATTCCTCCGCATT 58.767 47.619 0.00 0.00 0.00 3.56
4779 4926 1.818642 GCCATGACAAGCTGAAGAGT 58.181 50.000 0.00 0.00 0.00 3.24
4788 4935 5.011023 TGACAAGCTGAAGAGTGTGAAGATA 59.989 40.000 0.00 0.00 0.00 1.98
4790 4937 5.698545 ACAAGCTGAAGAGTGTGAAGATAAC 59.301 40.000 0.00 0.00 0.00 1.89
4818 4965 5.717078 TCAAATCTGCAAAGAGCTTGATT 57.283 34.783 0.00 0.00 45.94 2.57
4854 5001 0.103026 TCATCGAGAATGCAGGGTCG 59.897 55.000 7.80 7.80 35.17 4.79
4858 5005 0.872021 CGAGAATGCAGGGTCGCTAC 60.872 60.000 0.00 0.00 0.00 3.58
4892 5039 0.716108 GACACCGCTGATTGTTCTCG 59.284 55.000 0.00 0.00 0.00 4.04
4894 5041 1.271379 ACACCGCTGATTGTTCTCGTA 59.729 47.619 0.00 0.00 0.00 3.43
4911 5058 2.159558 TCGTAGATGTTCTGACAGCGAC 60.160 50.000 0.00 0.00 46.47 5.19
4913 5060 3.732169 CGTAGATGTTCTGACAGCGACAT 60.732 47.826 18.43 18.43 44.61 3.06
4917 5064 1.071605 GTTCTGACAGCGACATGGAC 58.928 55.000 0.00 0.00 0.00 4.02
4920 5067 0.037882 CTGACAGCGACATGGACAGT 60.038 55.000 0.00 0.00 0.00 3.55
5011 5158 1.600107 GGCATAGTTCCGTCCACCA 59.400 57.895 0.00 0.00 0.00 4.17
5133 5280 5.614324 TTTTAGATGGGATGTGATCGAGT 57.386 39.130 0.00 0.00 0.00 4.18
5230 5378 8.700722 TTTTATTACCGACGCTTTAGATGTTA 57.299 30.769 0.00 0.00 0.00 2.41
5343 5617 6.268387 ACAGATGGAGTTCAAATTTGTTCCAT 59.732 34.615 31.40 31.40 42.11 3.41
5344 5618 6.588756 CAGATGGAGTTCAAATTTGTTCCATG 59.411 38.462 33.58 25.64 40.91 3.66
5366 5640 3.076621 TGTCAGCATCTTGTAAGCCTTG 58.923 45.455 0.00 0.00 0.00 3.61
5436 5723 1.863267 ATGCAGCGCAGAATCTACTC 58.137 50.000 11.47 0.00 43.65 2.59
5475 5762 3.489355 TCAAACTGTGTCTTGGCATCAT 58.511 40.909 0.00 0.00 0.00 2.45
5521 5808 2.319136 ACAGTTCGGTACAGCAAACA 57.681 45.000 0.00 0.00 0.00 2.83
5615 5913 6.971184 CCATGACAAGAATCACAAGATTAAGC 59.029 38.462 0.00 0.00 44.30 3.09
5650 5955 2.081462 CCTTTTACCGAGACGCCAAAT 58.919 47.619 0.00 0.00 0.00 2.32
5735 6055 6.388619 TTTTTAGGAAGGAAGGTGCTCTAT 57.611 37.500 0.00 0.00 0.00 1.98
5768 6093 8.082242 GCATCTGTTAACACTTATTTCCACTTT 58.918 33.333 3.59 0.00 0.00 2.66
5800 6126 9.985730 TCTTTTTGCTTTTCATCACTGATATTT 57.014 25.926 0.00 0.00 0.00 1.40
5807 6133 9.178427 GCTTTTCATCACTGATATTTAATGAGC 57.822 33.333 0.00 0.00 0.00 4.26
5882 6210 9.937577 GATAATAAATCAAAAACAGCGAAACAC 57.062 29.630 0.00 0.00 0.00 3.32
5891 6219 3.951979 ACAGCGAAACACTTTCAGAAG 57.048 42.857 0.00 0.00 39.63 2.85
5932 6264 1.135094 AGGGCCATGTACAGATGGAG 58.865 55.000 17.92 0.00 45.24 3.86
5946 6278 4.256110 CAGATGGAGTACAATTGTCAGCA 58.744 43.478 15.85 0.00 0.00 4.41
5947 6279 4.880120 CAGATGGAGTACAATTGTCAGCAT 59.120 41.667 15.85 1.17 0.00 3.79
5948 6280 5.007430 CAGATGGAGTACAATTGTCAGCATC 59.993 44.000 15.85 9.87 0.00 3.91
5949 6281 4.558226 TGGAGTACAATTGTCAGCATCT 57.442 40.909 15.85 5.34 0.00 2.90
5950 6282 4.910195 TGGAGTACAATTGTCAGCATCTT 58.090 39.130 15.85 0.00 0.00 2.40
5951 6283 6.048732 TGGAGTACAATTGTCAGCATCTTA 57.951 37.500 15.85 0.00 0.00 2.10
5952 6284 6.653020 TGGAGTACAATTGTCAGCATCTTAT 58.347 36.000 15.85 0.00 0.00 1.73
5953 6285 7.791029 TGGAGTACAATTGTCAGCATCTTATA 58.209 34.615 15.85 0.00 0.00 0.98
5960 6292 6.630444 ATTGTCAGCATCTTATAAGCCTTG 57.370 37.500 7.67 6.58 0.00 3.61
5975 6307 4.373156 AGCCTTGAAGTTGGTATGAACT 57.627 40.909 0.00 0.00 37.81 3.01
5977 6309 3.821033 GCCTTGAAGTTGGTATGAACTGT 59.179 43.478 0.00 0.00 36.28 3.55
6046 6378 3.735208 GCAGCGCAGAATCTAGTTCAGTA 60.735 47.826 11.47 0.00 39.39 2.74
6047 6379 3.794028 CAGCGCAGAATCTAGTTCAGTAC 59.206 47.826 11.47 0.00 39.39 2.73
6109 6441 2.540515 ACGATGCAGGAATACAGTTCG 58.459 47.619 0.00 0.00 0.00 3.95
6121 6453 1.589803 ACAGTTCGGTACAGCAAACC 58.410 50.000 0.00 0.00 0.00 3.27
6144 6476 2.680312 ACAGGTGTGCAGTATAGCAG 57.320 50.000 0.00 0.00 46.69 4.24
6162 6494 1.716581 CAGAGTCGAAACGTTCAGAGC 59.283 52.381 0.00 0.00 0.00 4.09
6167 6499 1.014564 CGAAACGTTCAGAGCTCCCC 61.015 60.000 10.93 0.00 0.00 4.81
6173 6505 1.807142 CGTTCAGAGCTCCCCTTTTTC 59.193 52.381 10.93 0.00 0.00 2.29
6178 6510 3.008049 TCAGAGCTCCCCTTTTTCAGTAC 59.992 47.826 10.93 0.00 0.00 2.73
6179 6511 2.979678 AGAGCTCCCCTTTTTCAGTACA 59.020 45.455 10.93 0.00 0.00 2.90
6180 6512 3.008485 AGAGCTCCCCTTTTTCAGTACAG 59.992 47.826 10.93 0.00 0.00 2.74
6181 6513 1.813178 GCTCCCCTTTTTCAGTACAGC 59.187 52.381 0.00 0.00 0.00 4.40
6182 6514 2.814097 GCTCCCCTTTTTCAGTACAGCA 60.814 50.000 0.00 0.00 0.00 4.41
6183 6515 2.814336 CTCCCCTTTTTCAGTACAGCAC 59.186 50.000 0.00 0.00 0.00 4.40
6184 6516 1.886542 CCCCTTTTTCAGTACAGCACC 59.113 52.381 0.00 0.00 0.00 5.01
6185 6517 1.886542 CCCTTTTTCAGTACAGCACCC 59.113 52.381 0.00 0.00 0.00 4.61
6186 6518 2.582052 CCTTTTTCAGTACAGCACCCA 58.418 47.619 0.00 0.00 0.00 4.51
6187 6519 3.157087 CCTTTTTCAGTACAGCACCCAT 58.843 45.455 0.00 0.00 0.00 4.00
6188 6520 4.331968 CCTTTTTCAGTACAGCACCCATA 58.668 43.478 0.00 0.00 0.00 2.74
6189 6521 4.764823 CCTTTTTCAGTACAGCACCCATAA 59.235 41.667 0.00 0.00 0.00 1.90
6190 6522 5.106157 CCTTTTTCAGTACAGCACCCATAAG 60.106 44.000 0.00 0.00 0.00 1.73
6191 6523 4.901197 TTTCAGTACAGCACCCATAAGA 57.099 40.909 0.00 0.00 0.00 2.10
6192 6524 4.901197 TTCAGTACAGCACCCATAAGAA 57.099 40.909 0.00 0.00 0.00 2.52
6193 6525 4.471904 TCAGTACAGCACCCATAAGAAG 57.528 45.455 0.00 0.00 0.00 2.85
6194 6526 4.093743 TCAGTACAGCACCCATAAGAAGA 58.906 43.478 0.00 0.00 0.00 2.87
6195 6527 4.716784 TCAGTACAGCACCCATAAGAAGAT 59.283 41.667 0.00 0.00 0.00 2.40
6196 6528 5.053145 CAGTACAGCACCCATAAGAAGATC 58.947 45.833 0.00 0.00 0.00 2.75
6197 6529 4.716784 AGTACAGCACCCATAAGAAGATCA 59.283 41.667 0.00 0.00 0.00 2.92
6198 6530 4.574674 ACAGCACCCATAAGAAGATCAA 57.425 40.909 0.00 0.00 0.00 2.57
6199 6531 4.265073 ACAGCACCCATAAGAAGATCAAC 58.735 43.478 0.00 0.00 0.00 3.18
6200 6532 4.263462 ACAGCACCCATAAGAAGATCAACA 60.263 41.667 0.00 0.00 0.00 3.33
6201 6533 4.701651 CAGCACCCATAAGAAGATCAACAA 59.298 41.667 0.00 0.00 0.00 2.83
6202 6534 5.359009 CAGCACCCATAAGAAGATCAACAAT 59.641 40.000 0.00 0.00 0.00 2.71
6203 6535 5.359009 AGCACCCATAAGAAGATCAACAATG 59.641 40.000 0.00 0.00 0.00 2.82
6204 6536 5.357878 GCACCCATAAGAAGATCAACAATGA 59.642 40.000 0.00 0.00 40.57 2.57
6205 6537 6.127647 GCACCCATAAGAAGATCAACAATGAA 60.128 38.462 0.00 0.00 39.49 2.57
6206 6538 7.478322 CACCCATAAGAAGATCAACAATGAAG 58.522 38.462 0.00 0.00 39.49 3.02
6207 6539 6.604795 ACCCATAAGAAGATCAACAATGAAGG 59.395 38.462 0.00 0.00 39.49 3.46
6208 6540 6.040166 CCCATAAGAAGATCAACAATGAAGGG 59.960 42.308 0.00 0.00 39.49 3.95
6209 6541 6.604795 CCATAAGAAGATCAACAATGAAGGGT 59.395 38.462 0.00 0.00 39.49 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
783 820 3.968045 TCTCGCCTGAAGAGAGAGT 57.032 52.632 0.00 0.00 39.57 3.24
788 825 1.204467 AGCTTTCTCTCGCCTGAAGAG 59.796 52.381 0.00 0.00 37.09 2.85
789 826 1.261480 AGCTTTCTCTCGCCTGAAGA 58.739 50.000 0.00 0.00 0.00 2.87
790 827 2.535331 GTAGCTTTCTCTCGCCTGAAG 58.465 52.381 0.00 0.00 0.00 3.02
791 828 1.135373 CGTAGCTTTCTCTCGCCTGAA 60.135 52.381 0.00 0.00 0.00 3.02
792 829 0.452184 CGTAGCTTTCTCTCGCCTGA 59.548 55.000 0.00 0.00 0.00 3.86
793 830 0.526524 CCGTAGCTTTCTCTCGCCTG 60.527 60.000 0.00 0.00 0.00 4.85
794 831 0.966370 ACCGTAGCTTTCTCTCGCCT 60.966 55.000 0.00 0.00 0.00 5.52
795 832 0.525882 GACCGTAGCTTTCTCTCGCC 60.526 60.000 0.00 0.00 0.00 5.54
796 833 0.452585 AGACCGTAGCTTTCTCTCGC 59.547 55.000 0.00 0.00 0.00 5.03
797 834 1.267632 CGAGACCGTAGCTTTCTCTCG 60.268 57.143 14.50 14.50 43.01 4.04
798 835 1.532298 GCGAGACCGTAGCTTTCTCTC 60.532 57.143 0.00 0.00 34.72 3.20
799 836 0.452585 GCGAGACCGTAGCTTTCTCT 59.547 55.000 0.00 0.00 34.72 3.10
800 837 0.862283 CGCGAGACCGTAGCTTTCTC 60.862 60.000 0.00 0.00 38.24 2.87
801 838 1.136984 CGCGAGACCGTAGCTTTCT 59.863 57.895 0.00 0.00 38.24 2.52
802 839 2.506345 GCGCGAGACCGTAGCTTTC 61.506 63.158 12.10 0.00 38.08 2.62
803 840 2.506438 GCGCGAGACCGTAGCTTT 60.506 61.111 12.10 0.00 38.08 3.51
804 841 4.493747 GGCGCGAGACCGTAGCTT 62.494 66.667 12.10 0.00 39.85 3.74
819 856 1.371145 GAGCTATGTCTCGCTCGGC 60.371 63.158 0.00 0.00 42.62 5.54
820 857 4.933483 GAGCTATGTCTCGCTCGG 57.067 61.111 0.00 0.00 42.62 4.63
826 863 0.932585 GCGCACGAGAGCTATGTCTC 60.933 60.000 0.30 0.00 39.81 3.36
827 864 1.064946 GCGCACGAGAGCTATGTCT 59.935 57.895 0.30 0.00 37.60 3.41
828 865 3.606826 GCGCACGAGAGCTATGTC 58.393 61.111 0.30 0.00 37.60 3.06
834 871 1.278849 GGCTTATAGCGCACGAGAGC 61.279 60.000 11.47 12.08 43.62 4.09
835 872 0.030773 TGGCTTATAGCGCACGAGAG 59.969 55.000 11.47 1.46 43.62 3.20
841 878 4.046938 GCTATATCTGGCTTATAGCGCA 57.953 45.455 11.47 0.00 43.62 6.09
853 890 4.693283 TGGAAACACGGAAGCTATATCTG 58.307 43.478 0.00 0.00 33.40 2.90
924 961 0.105039 CCACCCAAGCTACCTCGATC 59.895 60.000 0.00 0.00 0.00 3.69
1105 1151 1.797025 ACAAAAGTAGCAGGACGAGC 58.203 50.000 0.00 0.00 0.00 5.03
1106 1152 3.678548 GGTTACAAAAGTAGCAGGACGAG 59.321 47.826 0.00 0.00 0.00 4.18
1107 1153 3.069872 TGGTTACAAAAGTAGCAGGACGA 59.930 43.478 0.00 0.00 0.00 4.20
1108 1154 3.395639 TGGTTACAAAAGTAGCAGGACG 58.604 45.455 0.00 0.00 0.00 4.79
1109 1155 4.760204 ACATGGTTACAAAAGTAGCAGGAC 59.240 41.667 0.00 0.00 0.00 3.85
1160 1223 4.207165 ACCCTAATCTGCAAACGCAATAT 58.793 39.130 0.00 0.00 39.39 1.28
1162 1225 2.446435 ACCCTAATCTGCAAACGCAAT 58.554 42.857 0.00 0.00 39.39 3.56
1173 1236 5.551977 TCTTCTGGAAAAGGAACCCTAATCT 59.448 40.000 0.00 0.00 31.13 2.40
1205 1268 8.957466 GTTAACTCTAACATATGGCTCCTTTTT 58.043 33.333 7.80 0.00 37.85 1.94
1214 1277 7.661847 GGGATTGGAGTTAACTCTAACATATGG 59.338 40.741 29.79 0.00 44.36 2.74
1272 1335 1.556911 CTAGCCTGCCTCAGAAAAGGA 59.443 52.381 0.00 0.00 38.87 3.36
1279 1342 1.204146 TAAACCCTAGCCTGCCTCAG 58.796 55.000 0.00 0.00 0.00 3.35
1307 1370 0.613012 AATTCCCAGCCTGCCTGAAC 60.613 55.000 0.00 0.00 44.64 3.18
1365 1429 7.549134 GTGAGATCCTTATCATGTACACAAACA 59.451 37.037 0.00 0.00 34.28 2.83
1366 1430 7.766278 AGTGAGATCCTTATCATGTACACAAAC 59.234 37.037 0.00 0.00 34.28 2.93
1367 1431 7.851228 AGTGAGATCCTTATCATGTACACAAA 58.149 34.615 0.00 0.00 34.28 2.83
1368 1432 7.423844 AGTGAGATCCTTATCATGTACACAA 57.576 36.000 0.00 0.00 34.28 3.33
1409 1473 1.131638 AGTGCACCAGAAGTCCAGAA 58.868 50.000 14.63 0.00 0.00 3.02
1410 1474 0.394192 CAGTGCACCAGAAGTCCAGA 59.606 55.000 14.63 0.00 0.00 3.86
1411 1475 0.107456 ACAGTGCACCAGAAGTCCAG 59.893 55.000 14.63 0.00 0.00 3.86
1412 1476 0.546122 AACAGTGCACCAGAAGTCCA 59.454 50.000 14.63 0.00 0.00 4.02
1413 1477 2.037251 TCTAACAGTGCACCAGAAGTCC 59.963 50.000 14.63 0.00 0.00 3.85
1414 1478 3.321497 CTCTAACAGTGCACCAGAAGTC 58.679 50.000 14.63 0.00 0.00 3.01
1415 1479 2.037772 CCTCTAACAGTGCACCAGAAGT 59.962 50.000 14.63 1.80 0.00 3.01
1416 1480 2.613977 CCCTCTAACAGTGCACCAGAAG 60.614 54.545 14.63 6.88 0.00 2.85
1430 1494 5.546499 ACATCTCACAGGTTTAACCCTCTAA 59.454 40.000 10.93 0.00 39.75 2.10
1635 1700 6.689669 CGTAAAACAAAGGTTCAATTTCGACT 59.310 34.615 0.00 0.00 35.82 4.18
1646 1711 2.159352 ACGCTTGCGTAAAACAAAGGTT 60.159 40.909 19.31 0.00 39.43 3.50
1656 1722 1.141645 CAAGGTACACGCTTGCGTAA 58.858 50.000 20.22 9.09 0.00 3.18
1659 1725 0.384230 CAACAAGGTACACGCTTGCG 60.384 55.000 13.70 13.70 31.64 4.85
1665 1731 3.560068 AGAAGAAAGCAACAAGGTACACG 59.440 43.478 0.00 0.00 0.00 4.49
1709 1776 3.881089 TGGATCATCTGCAACACATCATC 59.119 43.478 0.00 0.00 0.00 2.92
1840 1907 3.299503 ACTTGCAACCAAAGTCTTCCAT 58.700 40.909 0.00 0.00 0.00 3.41
1892 1959 6.322712 AGCTAACACAGGTCCAAAAATTTGTA 59.677 34.615 5.27 0.00 36.45 2.41
1942 2047 8.267183 GGAGTAGAAGAGGAGTTACTACTTACT 58.733 40.741 6.44 6.44 42.11 2.24
1943 2048 7.498900 GGGAGTAGAAGAGGAGTTACTACTTAC 59.501 44.444 0.00 0.00 42.11 2.34
1944 2049 7.405565 AGGGAGTAGAAGAGGAGTTACTACTTA 59.594 40.741 0.00 0.00 42.11 2.24
1945 2050 6.218107 AGGGAGTAGAAGAGGAGTTACTACTT 59.782 42.308 0.00 0.00 42.11 2.24
1946 2051 5.732661 AGGGAGTAGAAGAGGAGTTACTACT 59.267 44.000 0.00 0.00 43.86 2.57
1947 2052 6.005066 AGGGAGTAGAAGAGGAGTTACTAC 57.995 45.833 0.00 0.00 35.23 2.73
1948 2053 5.132480 GGAGGGAGTAGAAGAGGAGTTACTA 59.868 48.000 0.00 0.00 0.00 1.82
1949 2054 4.079615 GGAGGGAGTAGAAGAGGAGTTACT 60.080 50.000 0.00 0.00 0.00 2.24
1950 2055 4.209538 GGAGGGAGTAGAAGAGGAGTTAC 58.790 52.174 0.00 0.00 0.00 2.50
1951 2056 3.117963 CGGAGGGAGTAGAAGAGGAGTTA 60.118 52.174 0.00 0.00 0.00 2.24
1952 2057 2.357361 CGGAGGGAGTAGAAGAGGAGTT 60.357 54.545 0.00 0.00 0.00 3.01
1953 2058 1.213430 CGGAGGGAGTAGAAGAGGAGT 59.787 57.143 0.00 0.00 0.00 3.85
1954 2059 1.213430 ACGGAGGGAGTAGAAGAGGAG 59.787 57.143 0.00 0.00 0.00 3.69
1955 2060 1.296984 ACGGAGGGAGTAGAAGAGGA 58.703 55.000 0.00 0.00 0.00 3.71
1956 2061 2.025898 GAACGGAGGGAGTAGAAGAGG 58.974 57.143 0.00 0.00 0.00 3.69
1957 2062 2.025898 GGAACGGAGGGAGTAGAAGAG 58.974 57.143 0.00 0.00 0.00 2.85
1958 2063 1.356738 TGGAACGGAGGGAGTAGAAGA 59.643 52.381 0.00 0.00 0.00 2.87
1959 2064 1.848652 TGGAACGGAGGGAGTAGAAG 58.151 55.000 0.00 0.00 0.00 2.85
1960 2065 2.314071 TTGGAACGGAGGGAGTAGAA 57.686 50.000 0.00 0.00 0.00 2.10
1961 2066 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
1962 2067 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
1963 2068 6.384886 ACTTATATTTTGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1964 2069 5.191124 ACTTATATTTTGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1965 2070 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1966 2071 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1967 2072 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1968 2073 7.625828 AAAGACTTATATTTTGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1986 2091 9.396022 TCACTTGTTGAAATCTCTAAAAAGACT 57.604 29.630 0.00 0.00 0.00 3.24
1987 2092 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
1988 2093 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
1991 2096 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
1992 2097 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
1994 2099 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1995 2100 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
1996 2101 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
1997 2102 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
1998 2103 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
1999 2104 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
2000 2105 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
2001 2106 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
2002 2107 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
2003 2108 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
2004 2109 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
2005 2110 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
2006 2111 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
2007 2112 8.542497 TTATTTTGCTTCGTATGTAGTCACTT 57.458 30.769 0.00 0.00 0.00 3.16
2008 2113 7.817962 ACTTATTTTGCTTCGTATGTAGTCACT 59.182 33.333 0.00 0.00 0.00 3.41
2009 2114 7.898309 CACTTATTTTGCTTCGTATGTAGTCAC 59.102 37.037 0.00 0.00 0.00 3.67
2010 2115 7.815549 TCACTTATTTTGCTTCGTATGTAGTCA 59.184 33.333 0.00 0.00 0.00 3.41
2011 2116 8.181487 TCACTTATTTTGCTTCGTATGTAGTC 57.819 34.615 0.00 0.00 0.00 2.59
2012 2117 8.542497 TTCACTTATTTTGCTTCGTATGTAGT 57.458 30.769 0.00 0.00 0.00 2.73
2013 2118 9.638300 GATTCACTTATTTTGCTTCGTATGTAG 57.362 33.333 0.00 0.00 0.00 2.74
2014 2119 9.378551 AGATTCACTTATTTTGCTTCGTATGTA 57.621 29.630 0.00 0.00 0.00 2.29
2015 2120 8.268850 AGATTCACTTATTTTGCTTCGTATGT 57.731 30.769 0.00 0.00 0.00 2.29
2019 2124 9.601217 AGTATAGATTCACTTATTTTGCTTCGT 57.399 29.630 0.00 0.00 0.00 3.85
2061 2166 8.836413 CAAATGGACTAAAACATACGGATGTAT 58.164 33.333 15.10 8.95 45.93 2.29
2062 2167 8.041919 TCAAATGGACTAAAACATACGGATGTA 58.958 33.333 15.10 0.00 45.93 2.29
2064 2169 7.315247 TCAAATGGACTAAAACATACGGATG 57.685 36.000 5.94 5.94 39.16 3.51
2065 2170 7.931578 TTCAAATGGACTAAAACATACGGAT 57.068 32.000 0.00 0.00 0.00 4.18
2066 2171 7.747155 TTTCAAATGGACTAAAACATACGGA 57.253 32.000 0.00 0.00 0.00 4.69
2067 2172 8.026607 ACATTTCAAATGGACTAAAACATACGG 58.973 33.333 14.70 0.00 0.00 4.02
2068 2173 8.964420 ACATTTCAAATGGACTAAAACATACG 57.036 30.769 14.70 0.00 0.00 3.06
2078 2183 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
2079 2184 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
2096 2201 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2097 2202 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2098 2203 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2099 2204 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2100 2205 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2101 2206 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2102 2207 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2103 2208 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2104 2209 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
2105 2210 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
2106 2211 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
2107 2212 7.441903 AAAATACTCCCTCCGTTCCTAAATA 57.558 36.000 0.00 0.00 0.00 1.40
2108 2213 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
2109 2214 5.767277 AAAATACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
2110 2215 5.721000 TGTAAAATACTCCCTCCGTTCCTAA 59.279 40.000 0.00 0.00 0.00 2.69
2111 2216 5.271598 TGTAAAATACTCCCTCCGTTCCTA 58.728 41.667 0.00 0.00 0.00 2.94
2112 2217 4.098894 TGTAAAATACTCCCTCCGTTCCT 58.901 43.478 0.00 0.00 0.00 3.36
2113 2218 4.476628 TGTAAAATACTCCCTCCGTTCC 57.523 45.455 0.00 0.00 0.00 3.62
2114 2219 5.353400 CCTTTGTAAAATACTCCCTCCGTTC 59.647 44.000 0.00 0.00 0.00 3.95
2115 2220 5.250982 CCTTTGTAAAATACTCCCTCCGTT 58.749 41.667 0.00 0.00 0.00 4.44
2116 2221 4.324022 CCCTTTGTAAAATACTCCCTCCGT 60.324 45.833 0.00 0.00 0.00 4.69
2117 2222 4.196971 CCCTTTGTAAAATACTCCCTCCG 58.803 47.826 0.00 0.00 0.00 4.63
2118 2223 4.228895 TCCCCTTTGTAAAATACTCCCTCC 59.771 45.833 0.00 0.00 0.00 4.30
2119 2224 5.446260 TCCCCTTTGTAAAATACTCCCTC 57.554 43.478 0.00 0.00 0.00 4.30
2120 2225 5.871324 TTCCCCTTTGTAAAATACTCCCT 57.129 39.130 0.00 0.00 0.00 4.20
2121 2226 6.250711 TCTTTCCCCTTTGTAAAATACTCCC 58.749 40.000 0.00 0.00 0.00 4.30
2122 2227 7.956328 ATCTTTCCCCTTTGTAAAATACTCC 57.044 36.000 0.00 0.00 0.00 3.85
2123 2228 9.020731 TCAATCTTTCCCCTTTGTAAAATACTC 57.979 33.333 0.00 0.00 0.00 2.59
2124 2229 8.950007 TCAATCTTTCCCCTTTGTAAAATACT 57.050 30.769 0.00 0.00 0.00 2.12
2125 2230 9.586435 CATCAATCTTTCCCCTTTGTAAAATAC 57.414 33.333 0.00 0.00 0.00 1.89
2126 2231 9.320295 ACATCAATCTTTCCCCTTTGTAAAATA 57.680 29.630 0.00 0.00 0.00 1.40
2127 2232 8.206126 ACATCAATCTTTCCCCTTTGTAAAAT 57.794 30.769 0.00 0.00 0.00 1.82
2128 2233 7.610580 ACATCAATCTTTCCCCTTTGTAAAA 57.389 32.000 0.00 0.00 0.00 1.52
2129 2234 7.441017 CAACATCAATCTTTCCCCTTTGTAAA 58.559 34.615 0.00 0.00 0.00 2.01
2130 2235 6.014669 CCAACATCAATCTTTCCCCTTTGTAA 60.015 38.462 0.00 0.00 0.00 2.41
2131 2236 5.480073 CCAACATCAATCTTTCCCCTTTGTA 59.520 40.000 0.00 0.00 0.00 2.41
2132 2237 4.284234 CCAACATCAATCTTTCCCCTTTGT 59.716 41.667 0.00 0.00 0.00 2.83
2133 2238 4.322953 CCCAACATCAATCTTTCCCCTTTG 60.323 45.833 0.00 0.00 0.00 2.77
2134 2239 3.840078 CCCAACATCAATCTTTCCCCTTT 59.160 43.478 0.00 0.00 0.00 3.11
2135 2240 3.444029 CCCAACATCAATCTTTCCCCTT 58.556 45.455 0.00 0.00 0.00 3.95
2136 2241 2.292455 CCCCAACATCAATCTTTCCCCT 60.292 50.000 0.00 0.00 0.00 4.79
2137 2242 2.110578 CCCCAACATCAATCTTTCCCC 58.889 52.381 0.00 0.00 0.00 4.81
2138 2243 1.482182 GCCCCAACATCAATCTTTCCC 59.518 52.381 0.00 0.00 0.00 3.97
2139 2244 2.460669 AGCCCCAACATCAATCTTTCC 58.539 47.619 0.00 0.00 0.00 3.13
2140 2245 4.541973 AAAGCCCCAACATCAATCTTTC 57.458 40.909 0.00 0.00 0.00 2.62
2141 2246 5.543790 AGTTAAAGCCCCAACATCAATCTTT 59.456 36.000 0.00 0.00 0.00 2.52
2142 2247 5.086621 AGTTAAAGCCCCAACATCAATCTT 58.913 37.500 0.00 0.00 0.00 2.40
2143 2248 4.677182 AGTTAAAGCCCCAACATCAATCT 58.323 39.130 0.00 0.00 0.00 2.40
2144 2249 5.405935 AAGTTAAAGCCCCAACATCAATC 57.594 39.130 0.00 0.00 0.00 2.67
2145 2250 5.071653 ACAAAGTTAAAGCCCCAACATCAAT 59.928 36.000 0.00 0.00 0.00 2.57
2146 2251 4.407296 ACAAAGTTAAAGCCCCAACATCAA 59.593 37.500 0.00 0.00 0.00 2.57
2147 2252 3.964031 ACAAAGTTAAAGCCCCAACATCA 59.036 39.130 0.00 0.00 0.00 3.07
2148 2253 4.306600 CACAAAGTTAAAGCCCCAACATC 58.693 43.478 0.00 0.00 0.00 3.06
2168 2273 2.540101 CTCGTGACAGACAGTTTTCCAC 59.460 50.000 0.00 0.00 0.00 4.02
2196 2301 3.281727 TTCTATCCAACATCAGGGCAC 57.718 47.619 0.00 0.00 0.00 5.01
2257 2371 8.109705 TGTAGCTAAAACACATCAATCACAAT 57.890 30.769 0.00 0.00 0.00 2.71
2259 2373 7.503521 TTGTAGCTAAAACACATCAATCACA 57.496 32.000 0.00 0.00 0.00 3.58
2260 2374 8.454106 AGATTGTAGCTAAAACACATCAATCAC 58.546 33.333 21.71 6.29 40.92 3.06
2262 2376 8.125448 GGAGATTGTAGCTAAAACACATCAATC 58.875 37.037 16.08 16.08 39.68 2.67
2263 2377 7.201644 CGGAGATTGTAGCTAAAACACATCAAT 60.202 37.037 0.00 0.13 0.00 2.57
2264 2378 6.092122 CGGAGATTGTAGCTAAAACACATCAA 59.908 38.462 0.00 0.00 0.00 2.57
2267 2381 4.332819 GCGGAGATTGTAGCTAAAACACAT 59.667 41.667 0.00 0.00 0.00 3.21
2268 2382 3.682858 GCGGAGATTGTAGCTAAAACACA 59.317 43.478 0.00 0.00 0.00 3.72
2269 2383 3.682858 TGCGGAGATTGTAGCTAAAACAC 59.317 43.478 0.00 0.00 0.00 3.32
2270 2384 3.932710 CTGCGGAGATTGTAGCTAAAACA 59.067 43.478 0.00 0.00 0.00 2.83
2271 2385 3.933332 ACTGCGGAGATTGTAGCTAAAAC 59.067 43.478 12.26 0.00 0.00 2.43
2391 2505 2.245582 GGTAGATATACACCCAGGCGT 58.754 52.381 0.00 0.00 0.00 5.68
2398 2512 7.166691 ACATGTATTCCGGTAGATATACACC 57.833 40.000 0.00 0.00 34.35 4.16
2413 2527 9.660180 GGGAGATCCTATCTTAAACATGTATTC 57.340 37.037 0.00 0.00 40.38 1.75
2420 2534 5.538877 AGGTGGGAGATCCTATCTTAAACA 58.461 41.667 0.00 0.00 33.83 2.83
2421 2535 5.279056 CGAGGTGGGAGATCCTATCTTAAAC 60.279 48.000 0.00 0.00 38.14 2.01
2458 2572 9.046296 CAATAACATATCTACAGAGTTTGGGAC 57.954 37.037 0.00 0.00 0.00 4.46
2461 2575 9.599866 TCACAATAACATATCTACAGAGTTTGG 57.400 33.333 0.00 0.00 0.00 3.28
2534 2650 2.123248 TTTCAGCCAGTCCATCCGCA 62.123 55.000 0.00 0.00 0.00 5.69
2535 2651 0.960364 TTTTCAGCCAGTCCATCCGC 60.960 55.000 0.00 0.00 0.00 5.54
2536 2652 1.755179 ATTTTCAGCCAGTCCATCCG 58.245 50.000 0.00 0.00 0.00 4.18
2537 2653 6.959639 TTATAATTTTCAGCCAGTCCATCC 57.040 37.500 0.00 0.00 0.00 3.51
2538 2654 7.945134 ACATTATAATTTTCAGCCAGTCCATC 58.055 34.615 0.00 0.00 0.00 3.51
2539 2655 7.560991 TGACATTATAATTTTCAGCCAGTCCAT 59.439 33.333 0.00 0.00 0.00 3.41
2540 2656 6.889177 TGACATTATAATTTTCAGCCAGTCCA 59.111 34.615 0.00 0.00 0.00 4.02
2541 2657 7.067494 AGTGACATTATAATTTTCAGCCAGTCC 59.933 37.037 6.73 0.05 0.00 3.85
2542 2658 7.989826 AGTGACATTATAATTTTCAGCCAGTC 58.010 34.615 6.73 4.15 0.00 3.51
2566 2682 4.143115 CGTGCAACTTCTACATGGTACAAG 60.143 45.833 0.00 0.00 36.59 3.16
2656 2772 6.586082 CCAATAATATCGGCTTACAAATTGCC 59.414 38.462 0.00 0.00 42.94 4.52
2675 2808 4.724798 AGTTAGTCATGGGGTAGCCAATAA 59.275 41.667 14.06 0.00 0.00 1.40
2958 3102 0.540365 ACATGGGTCCAAGCTTGTGG 60.540 55.000 24.35 11.97 40.33 4.17
2993 3137 7.036863 TCCCCCAAATTTCTAGTCTGAATAAGT 60.037 37.037 0.00 0.00 0.00 2.24
3075 3220 4.473196 TGCAGGAACCTGATTATAGGACAA 59.527 41.667 22.96 0.00 46.30 3.18
3077 3222 4.689612 TGCAGGAACCTGATTATAGGAC 57.310 45.455 22.96 4.13 46.30 3.85
3101 3246 6.321945 CAGGTGGATCACATATGAAATTTGGA 59.678 38.462 10.38 0.00 38.69 3.53
3110 3255 3.136763 GACTGCAGGTGGATCACATATG 58.863 50.000 19.93 0.00 35.86 1.78
3122 3267 1.944177 ACTGTATGGAGACTGCAGGT 58.056 50.000 19.93 4.31 0.00 4.00
3131 3276 4.282496 ACTCTACCCTGAACTGTATGGAG 58.718 47.826 0.00 0.00 0.00 3.86
3235 3380 5.262009 AGCAGCTACCCACGAAGATATATA 58.738 41.667 0.00 0.00 0.00 0.86
3245 3390 0.818296 AACTCTAGCAGCTACCCACG 59.182 55.000 0.00 0.00 0.00 4.94
3297 3442 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
3298 3443 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
3299 3444 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
3300 3445 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
3301 3446 4.510340 CCGTTCTTATATTTTGGGACGGAG 59.490 45.833 5.84 0.00 39.09 4.63
3302 3447 4.080975 ACCGTTCTTATATTTTGGGACGGA 60.081 41.667 16.95 0.00 39.88 4.69
3303 3448 4.193865 ACCGTTCTTATATTTTGGGACGG 58.806 43.478 9.71 9.71 42.01 4.79
3304 3449 5.806366 AACCGTTCTTATATTTTGGGACG 57.194 39.130 0.00 0.00 0.00 4.79
3305 3450 9.345517 GTAAAAACCGTTCTTATATTTTGGGAC 57.654 33.333 0.00 0.00 0.00 4.46
3306 3451 9.075678 TGTAAAAACCGTTCTTATATTTTGGGA 57.924 29.630 0.00 0.00 0.00 4.37
3307 3452 9.131416 GTGTAAAAACCGTTCTTATATTTTGGG 57.869 33.333 0.00 0.00 0.00 4.12
3308 3453 9.902196 AGTGTAAAAACCGTTCTTATATTTTGG 57.098 29.630 0.00 0.00 0.00 3.28
3340 3485 9.458374 CCAAAATATAAGAACGTTTTTGACACT 57.542 29.630 13.87 0.00 38.79 3.55
3341 3486 8.696175 CCCAAAATATAAGAACGTTTTTGACAC 58.304 33.333 13.87 0.00 38.79 3.67
3342 3487 8.630917 TCCCAAAATATAAGAACGTTTTTGACA 58.369 29.630 13.87 0.01 38.79 3.58
3343 3488 8.908678 GTCCCAAAATATAAGAACGTTTTTGAC 58.091 33.333 13.87 5.89 38.79 3.18
3344 3489 8.630917 TGTCCCAAAATATAAGAACGTTTTTGA 58.369 29.630 13.87 2.81 38.79 2.69
3345 3490 8.804688 TGTCCCAAAATATAAGAACGTTTTTG 57.195 30.769 13.87 12.16 37.14 2.44
3346 3491 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
3347 3492 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
3348 3493 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
3349 3494 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
3350 3495 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
3351 3496 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
3352 3497 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
3353 3498 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
3354 3499 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
3355 3500 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
3356 3501 7.758820 TTACTCCCTCTGTCCCAAAATATAA 57.241 36.000 0.00 0.00 0.00 0.98
3357 3502 7.758820 TTTACTCCCTCTGTCCCAAAATATA 57.241 36.000 0.00 0.00 0.00 0.86
3358 3503 6.652205 TTTACTCCCTCTGTCCCAAAATAT 57.348 37.500 0.00 0.00 0.00 1.28
3359 3504 6.423182 CATTTACTCCCTCTGTCCCAAAATA 58.577 40.000 0.00 0.00 0.00 1.40
3360 3505 5.264395 CATTTACTCCCTCTGTCCCAAAAT 58.736 41.667 0.00 0.00 0.00 1.82
3361 3506 4.508405 CCATTTACTCCCTCTGTCCCAAAA 60.508 45.833 0.00 0.00 0.00 2.44
3362 3507 3.010138 CCATTTACTCCCTCTGTCCCAAA 59.990 47.826 0.00 0.00 0.00 3.28
3363 3508 2.576191 CCATTTACTCCCTCTGTCCCAA 59.424 50.000 0.00 0.00 0.00 4.12
3364 3509 2.196595 CCATTTACTCCCTCTGTCCCA 58.803 52.381 0.00 0.00 0.00 4.37
3365 3510 2.197465 ACCATTTACTCCCTCTGTCCC 58.803 52.381 0.00 0.00 0.00 4.46
3366 3511 5.632034 AATACCATTTACTCCCTCTGTCC 57.368 43.478 0.00 0.00 0.00 4.02
3367 3512 6.316390 CACAAATACCATTTACTCCCTCTGTC 59.684 42.308 0.00 0.00 0.00 3.51
3368 3513 6.180472 CACAAATACCATTTACTCCCTCTGT 58.820 40.000 0.00 0.00 0.00 3.41
3369 3514 5.066505 GCACAAATACCATTTACTCCCTCTG 59.933 44.000 0.00 0.00 0.00 3.35
3370 3515 5.193679 GCACAAATACCATTTACTCCCTCT 58.806 41.667 0.00 0.00 0.00 3.69
3371 3516 4.947388 TGCACAAATACCATTTACTCCCTC 59.053 41.667 0.00 0.00 0.00 4.30
3372 3517 4.929479 TGCACAAATACCATTTACTCCCT 58.071 39.130 0.00 0.00 0.00 4.20
3373 3518 5.652994 TTGCACAAATACCATTTACTCCC 57.347 39.130 0.00 0.00 0.00 4.30
3374 3519 6.630071 ACATTGCACAAATACCATTTACTCC 58.370 36.000 0.00 0.00 0.00 3.85
3375 3520 8.673711 TCTACATTGCACAAATACCATTTACTC 58.326 33.333 0.00 0.00 0.00 2.59
3376 3521 8.574251 TCTACATTGCACAAATACCATTTACT 57.426 30.769 0.00 0.00 0.00 2.24
3377 3522 9.289303 CTTCTACATTGCACAAATACCATTTAC 57.711 33.333 0.00 0.00 0.00 2.01
3378 3523 9.019656 ACTTCTACATTGCACAAATACCATTTA 57.980 29.630 0.00 0.00 0.00 1.40
3442 3587 1.199789 CATGTGGTGTGATTCGTTGGG 59.800 52.381 0.00 0.00 0.00 4.12
3445 3590 2.151202 GGACATGTGGTGTGATTCGTT 58.849 47.619 1.15 0.00 42.36 3.85
3447 3592 2.099141 AGGACATGTGGTGTGATTCG 57.901 50.000 1.15 0.00 42.36 3.34
3448 3593 4.853924 AAAAGGACATGTGGTGTGATTC 57.146 40.909 1.15 0.00 42.36 2.52
3510 3656 5.468746 TCAAGAGTTAAACACTGGATTTCCG 59.531 40.000 0.00 0.00 35.01 4.30
3533 3679 7.063780 CCAAATTTTCTGTATGACCAAGCATTC 59.936 37.037 0.00 0.00 0.00 2.67
3543 3689 5.895636 ATGACGCCAAATTTTCTGTATGA 57.104 34.783 0.00 0.00 0.00 2.15
3547 3693 8.225603 AGATTATATGACGCCAAATTTTCTGT 57.774 30.769 0.00 0.00 0.00 3.41
3649 3795 7.331193 ACAGTCGAGTTACTAAATCCAATGTTC 59.669 37.037 0.00 0.00 0.00 3.18
3679 3825 4.082026 GCCTTTGTAAGAACTCCATTGCAT 60.082 41.667 0.00 0.00 0.00 3.96
3757 3903 0.449388 GAGTCTTCAAGCCAATGCCG 59.551 55.000 0.00 0.00 38.69 5.69
3776 3922 2.094338 GGCCAAGGAATTCAAGCTTGAG 60.094 50.000 27.02 15.07 38.61 3.02
3869 4015 3.274288 CCTCTGAAGACAACATAAGGCC 58.726 50.000 0.00 0.00 0.00 5.19
3878 4024 1.211703 TGTTGCCACCTCTGAAGACAA 59.788 47.619 0.00 0.00 0.00 3.18
4245 4391 4.916041 TCTCCATGTGAGATTTGTCCTT 57.084 40.909 9.14 0.00 45.29 3.36
4299 4445 2.708051 CATGAGCATTATCGAGGGCAT 58.292 47.619 0.00 0.00 0.00 4.40
4329 4475 6.608002 AGTTTCAAGATTCGGGATAGTAGTCT 59.392 38.462 0.00 0.00 0.00 3.24
4339 4485 4.065088 TGTCAAGAGTTTCAAGATTCGGG 58.935 43.478 0.00 0.00 0.00 5.14
4447 4593 4.262938 GGGGGTATCAGCCTGTATAAAGAC 60.263 50.000 0.00 0.00 35.71 3.01
4497 4643 7.147724 CCATCAACAGTTATCCTCAGGTACTTA 60.148 40.741 0.00 0.00 34.60 2.24
4779 4926 3.410631 TTGAAGCCGGTTATCTTCACA 57.589 42.857 18.36 9.70 45.65 3.58
4788 4935 1.327303 TTGCAGATTTGAAGCCGGTT 58.673 45.000 1.90 0.00 0.00 4.44
4790 4937 1.541147 TCTTTGCAGATTTGAAGCCGG 59.459 47.619 0.00 0.00 0.00 6.13
4800 4947 3.128938 GCTCAATCAAGCTCTTTGCAGAT 59.871 43.478 0.00 0.00 45.94 2.90
4828 4975 4.630505 CCCTGCATTCTCGATGATATGAAG 59.369 45.833 0.00 0.00 38.03 3.02
4854 5001 1.555075 TCCAATGTGAGGGACTGTAGC 59.445 52.381 0.00 0.00 41.55 3.58
4892 5039 3.217599 TGTCGCTGTCAGAACATCTAC 57.782 47.619 3.32 0.00 34.13 2.59
4894 5041 2.614779 CATGTCGCTGTCAGAACATCT 58.385 47.619 14.90 0.00 34.13 2.90
4911 5058 3.005554 CAAGGTAGAGCAACTGTCCATG 58.994 50.000 0.00 0.00 0.00 3.66
4913 5060 1.347707 CCAAGGTAGAGCAACTGTCCA 59.652 52.381 0.00 0.00 0.00 4.02
4917 5064 0.678048 GGCCCAAGGTAGAGCAACTG 60.678 60.000 0.00 0.00 0.00 3.16
4920 5067 0.840288 TCTGGCCCAAGGTAGAGCAA 60.840 55.000 0.00 0.00 0.00 3.91
5011 5158 2.683152 GCTCCAGAACATCCAGCTTCAT 60.683 50.000 0.00 0.00 0.00 2.57
5133 5280 2.715763 ACTCCAGGTAAAGGGTCTCA 57.284 50.000 0.00 0.00 0.00 3.27
5205 5352 7.599630 AACATCTAAAGCGTCGGTAATAAAA 57.400 32.000 0.00 0.00 0.00 1.52
5206 5353 8.700722 TTAACATCTAAAGCGTCGGTAATAAA 57.299 30.769 0.00 0.00 0.00 1.40
5343 5617 2.038952 AGGCTTACAAGATGCTGACACA 59.961 45.455 0.00 0.00 0.00 3.72
5344 5618 2.704572 AGGCTTACAAGATGCTGACAC 58.295 47.619 0.00 0.00 0.00 3.67
5366 5640 2.681097 GCCTCCAGTTCATACCACCTTC 60.681 54.545 0.00 0.00 0.00 3.46
5436 5723 5.009010 AGTTTGATTTGCTGTACTGAACTGG 59.991 40.000 3.61 0.00 0.00 4.00
5475 5762 4.761739 CCTGCACTGGATTTCTGAAAGTTA 59.238 41.667 8.95 0.00 33.76 2.24
5521 5808 4.651778 TGCTATACTGCAGACCTGTTTTT 58.348 39.130 23.35 0.00 38.12 1.94
5735 6055 8.565896 AATAAGTGTTAACAGATGCATCAAGA 57.434 30.769 27.81 9.61 0.00 3.02
5768 6093 8.077991 CAGTGATGAAAAGCAAAAAGACAGATA 58.922 33.333 0.00 0.00 0.00 1.98
5807 6133 8.060679 CAGAACTAAACATCTTAAGCATCGATG 58.939 37.037 21.27 21.27 40.18 3.84
5808 6134 7.981789 TCAGAACTAAACATCTTAAGCATCGAT 59.018 33.333 0.00 0.00 0.00 3.59
5809 6135 7.320399 TCAGAACTAAACATCTTAAGCATCGA 58.680 34.615 0.00 0.00 0.00 3.59
5810 6136 7.525688 TCAGAACTAAACATCTTAAGCATCG 57.474 36.000 0.00 0.00 0.00 3.84
5882 6210 6.036470 TCATAGTACATCGCACTTCTGAAAG 58.964 40.000 0.00 0.00 38.54 2.62
5891 6219 3.004419 TGCTACCTCATAGTACATCGCAC 59.996 47.826 0.00 0.00 32.90 5.34
5899 6227 1.219469 TGGCCCTGCTACCTCATAGTA 59.781 52.381 0.00 0.00 32.90 1.82
5900 6228 0.031111 TGGCCCTGCTACCTCATAGT 60.031 55.000 0.00 0.00 32.90 2.12
5901 6229 1.002888 CATGGCCCTGCTACCTCATAG 59.997 57.143 0.00 0.00 0.00 2.23
5932 6264 7.227512 AGGCTTATAAGATGCTGACAATTGTAC 59.772 37.037 16.85 4.95 0.00 2.90
5946 6278 8.494433 TCATACCAACTTCAAGGCTTATAAGAT 58.506 33.333 21.71 11.63 0.00 2.40
5947 6279 7.857456 TCATACCAACTTCAAGGCTTATAAGA 58.143 34.615 21.71 4.97 0.00 2.10
5948 6280 8.398665 GTTCATACCAACTTCAAGGCTTATAAG 58.601 37.037 16.03 16.03 0.00 1.73
5949 6281 8.107095 AGTTCATACCAACTTCAAGGCTTATAA 58.893 33.333 0.00 0.00 32.34 0.98
5950 6282 7.552687 CAGTTCATACCAACTTCAAGGCTTATA 59.447 37.037 0.00 0.00 34.17 0.98
5951 6283 6.375455 CAGTTCATACCAACTTCAAGGCTTAT 59.625 38.462 0.00 0.00 34.17 1.73
5952 6284 5.705441 CAGTTCATACCAACTTCAAGGCTTA 59.295 40.000 0.00 0.00 34.17 3.09
5953 6285 4.520492 CAGTTCATACCAACTTCAAGGCTT 59.480 41.667 0.00 0.00 34.17 4.35
5960 6292 4.575885 TGCCTACAGTTCATACCAACTTC 58.424 43.478 0.00 0.00 34.17 3.01
5992 6324 3.244146 TGTTCCAAATGCCAAGACCAATG 60.244 43.478 0.00 0.00 0.00 2.82
5993 6325 2.971330 TGTTCCAAATGCCAAGACCAAT 59.029 40.909 0.00 0.00 0.00 3.16
6046 6378 1.659794 GCACTGGTTGATTTGCCGT 59.340 52.632 0.00 0.00 0.00 5.68
6047 6379 1.080569 GGCACTGGTTGATTTGCCG 60.081 57.895 0.00 0.00 44.88 5.69
6109 6441 2.429250 ACCTGTTTTGGTTTGCTGTACC 59.571 45.455 0.00 0.00 36.89 3.34
6121 6453 3.501828 TGCTATACTGCACACCTGTTTTG 59.498 43.478 0.00 0.00 38.12 2.44
6144 6476 1.980156 GAGCTCTGAACGTTTCGACTC 59.020 52.381 6.43 3.00 0.00 3.36
6162 6494 2.814336 GTGCTGTACTGAAAAAGGGGAG 59.186 50.000 3.61 0.00 0.00 4.30
6167 6499 5.705441 TCTTATGGGTGCTGTACTGAAAAAG 59.295 40.000 3.61 0.00 0.00 2.27
6173 6505 4.471904 TCTTCTTATGGGTGCTGTACTG 57.528 45.455 0.00 0.00 0.00 2.74
6178 6510 4.264253 TGTTGATCTTCTTATGGGTGCTG 58.736 43.478 0.00 0.00 0.00 4.41
6179 6511 4.574674 TGTTGATCTTCTTATGGGTGCT 57.425 40.909 0.00 0.00 0.00 4.40
6180 6512 5.357878 TCATTGTTGATCTTCTTATGGGTGC 59.642 40.000 0.00 0.00 0.00 5.01
6181 6513 7.395190 TTCATTGTTGATCTTCTTATGGGTG 57.605 36.000 0.00 0.00 0.00 4.61
6182 6514 6.604795 CCTTCATTGTTGATCTTCTTATGGGT 59.395 38.462 0.00 0.00 0.00 4.51
6183 6515 6.040166 CCCTTCATTGTTGATCTTCTTATGGG 59.960 42.308 0.00 0.00 0.00 4.00
6184 6516 6.604795 ACCCTTCATTGTTGATCTTCTTATGG 59.395 38.462 0.00 0.00 0.00 2.74
6185 6517 7.636150 ACCCTTCATTGTTGATCTTCTTATG 57.364 36.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.