Multiple sequence alignment - TraesCS5B01G271800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G271800 chr5B 100.000 4243 0 0 691 4933 457134805 457130563 0.000000e+00 7836.0
1 TraesCS5B01G271800 chr5B 100.000 409 0 0 1 409 457135495 457135087 0.000000e+00 756.0
2 TraesCS5B01G271800 chr5B 80.400 500 55 21 2398 2860 334873678 334873185 1.700000e-89 340.0
3 TraesCS5B01G271800 chr5B 95.745 188 2 2 2019 2200 269926327 269926140 1.040000e-76 298.0
4 TraesCS5B01G271800 chr5B 96.703 182 1 1 2019 2195 298802896 298802715 1.040000e-76 298.0
5 TraesCS5B01G271800 chr5B 93.421 76 4 1 1951 2026 544620452 544620526 1.450000e-20 111.0
6 TraesCS5B01G271800 chr5B 83.908 87 14 0 926 1012 535700235 535700321 3.160000e-12 84.2
7 TraesCS5B01G271800 chr5B 75.714 140 31 2 877 1013 423366077 423365938 3.190000e-07 67.6
8 TraesCS5B01G271800 chr5A 91.736 2396 132 34 2196 4573 481902526 481900179 0.000000e+00 3267.0
9 TraesCS5B01G271800 chr5A 91.040 1317 67 14 691 1957 481903843 481902528 0.000000e+00 1731.0
10 TraesCS5B01G271800 chr5A 82.806 506 45 13 2393 2860 487792201 487792702 9.880000e-112 414.0
11 TraesCS5B01G271800 chr5A 81.967 488 43 18 2395 2860 346140285 346139821 6.030000e-99 372.0
12 TraesCS5B01G271800 chr5A 85.488 379 27 5 45 409 481904559 481904195 2.170000e-98 370.0
13 TraesCS5B01G271800 chr5A 89.416 274 12 12 4664 4933 481899960 481899700 3.680000e-86 329.0
14 TraesCS5B01G271800 chr5D 87.802 2402 171 67 2596 4916 381034196 381031836 0.000000e+00 2700.0
15 TraesCS5B01G271800 chr5D 92.751 1283 68 14 691 1958 381036744 381035472 0.000000e+00 1831.0
16 TraesCS5B01G271800 chr5D 87.828 419 28 9 4 409 381037250 381036842 2.080000e-128 470.0
17 TraesCS5B01G271800 chr5D 85.784 408 29 15 2198 2604 381035469 381035090 5.950000e-109 405.0
18 TraesCS5B01G271800 chr3A 83.232 495 49 10 2395 2860 600924251 600923762 1.640000e-114 424.0
19 TraesCS5B01G271800 chr3A 94.595 74 3 1 1950 2022 13729629 13729702 4.040000e-21 113.0
20 TraesCS5B01G271800 chr6B 81.621 506 53 13 2391 2860 523191486 523190985 2.790000e-102 383.0
21 TraesCS5B01G271800 chr6B 85.409 281 14 7 1943 2196 175329719 175329999 2.930000e-67 267.0
22 TraesCS5B01G271800 chr7B 84.478 393 40 5 2487 2860 516793607 516793217 7.800000e-98 368.0
23 TraesCS5B01G271800 chr7B 95.745 188 2 2 2019 2200 426204002 426204189 1.040000e-76 298.0
24 TraesCS5B01G271800 chr7B 92.771 83 3 3 1943 2022 709087601 709087519 3.120000e-22 117.0
25 TraesCS5B01G271800 chr7B 97.015 67 2 0 1956 2022 6897765 6897699 4.040000e-21 113.0
26 TraesCS5B01G271800 chr2B 82.805 442 38 9 2395 2802 26564798 26564361 1.310000e-95 361.0
27 TraesCS5B01G271800 chr2B 95.745 188 2 2 2019 2200 212381409 212381222 1.040000e-76 298.0
28 TraesCS5B01G271800 chr2B 95.745 188 2 2 2019 2200 511849761 511849948 1.040000e-76 298.0
29 TraesCS5B01G271800 chr2B 95.238 189 3 2 2019 2201 396285198 396285386 1.340000e-75 294.0
30 TraesCS5B01G271800 chr2B 94.792 192 3 3 2015 2200 165083410 165083220 4.830000e-75 292.0
31 TraesCS5B01G271800 chr2B 76.233 223 43 8 796 1010 681409288 681409508 5.220000e-20 110.0
32 TraesCS5B01G271800 chr2B 78.417 139 26 4 876 1012 794866992 794866856 2.450000e-13 87.9
33 TraesCS5B01G271800 chr1A 84.143 391 37 6 2489 2860 517102987 517103371 6.070000e-94 355.0
34 TraesCS5B01G271800 chr4A 83.418 392 31 6 2487 2860 383538199 383538574 2.850000e-87 333.0
35 TraesCS5B01G271800 chr4D 80.873 481 40 14 2415 2860 253777013 253777476 1.020000e-86 331.0
36 TraesCS5B01G271800 chr6D 79.600 500 65 15 2391 2859 354904895 354905388 1.710000e-84 324.0
37 TraesCS5B01G271800 chr4B 81.465 437 43 10 2449 2866 348137357 348136940 1.710000e-84 324.0
38 TraesCS5B01G271800 chr4B 95.213 188 3 2 2019 2200 452302808 452302995 4.830000e-75 292.0
39 TraesCS5B01G271800 chr4B 95.714 70 3 0 1953 2022 339409486 339409417 4.040000e-21 113.0
40 TraesCS5B01G271800 chr3B 95.745 188 2 2 2019 2200 667303234 667303421 1.040000e-76 298.0
41 TraesCS5B01G271800 chrUn 76.555 418 49 19 2487 2860 30032926 30032514 3.030000e-42 183.0
42 TraesCS5B01G271800 chr1B 83.158 190 17 4 2487 2661 1526212 1526401 5.110000e-35 159.0
43 TraesCS5B01G271800 chr1B 78.829 222 36 10 798 1012 344002105 344002322 6.660000e-29 139.0
44 TraesCS5B01G271800 chr1B 97.101 69 2 0 1954 2022 622376148 622376216 3.120000e-22 117.0
45 TraesCS5B01G271800 chr1D 78.302 212 37 8 807 1012 270231144 270231352 1.440000e-25 128.0
46 TraesCS5B01G271800 chr1D 91.463 82 5 2 1941 2022 405171973 405172052 1.450000e-20 111.0
47 TraesCS5B01G271800 chr2A 92.500 80 5 1 1943 2022 690533662 690533740 4.040000e-21 113.0
48 TraesCS5B01G271800 chr2A 76.444 225 39 13 796 1010 708059154 708059374 5.220000e-20 110.0
49 TraesCS5B01G271800 chr2D 77.103 214 35 12 807 1010 568801828 568802037 1.450000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G271800 chr5B 457130563 457135495 4932 True 4296.00 7836 100.00000 1 4933 2 chr5B.!!$R5 4932
1 TraesCS5B01G271800 chr5A 481899700 481904559 4859 True 1424.25 3267 89.42000 45 4933 4 chr5A.!!$R2 4888
2 TraesCS5B01G271800 chr5A 487792201 487792702 501 False 414.00 414 82.80600 2393 2860 1 chr5A.!!$F1 467
3 TraesCS5B01G271800 chr5D 381031836 381037250 5414 True 1351.50 2700 88.54125 4 4916 4 chr5D.!!$R1 4912
4 TraesCS5B01G271800 chr6B 523190985 523191486 501 True 383.00 383 81.62100 2391 2860 1 chr6B.!!$R1 469

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 312 0.112412 AAGTCCACCACCAACCATCC 59.888 55.0 0.00 0.00 0.00 3.51 F
1274 1404 0.323629 GTTGTCGACCAGATTGGGGA 59.676 55.0 14.12 0.00 43.37 4.81 F
1977 2119 0.115349 AGACTAGCCACAGTGGGAGT 59.885 55.0 21.77 2.87 38.19 3.85 F
3318 4406 0.546122 TTTGACACAGCTGGAGTGGT 59.454 50.0 19.93 7.77 41.21 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2100 0.115349 ACTCCCACTGTGGCTAGTCT 59.885 55.0 21.47 3.44 35.79 3.24 R
3098 4183 0.396435 AACCCTGACACAGATCGCAA 59.604 50.0 0.00 0.00 32.44 4.85 R
3626 4721 0.107508 ATGACTGTGAATCCGCTGGG 60.108 55.0 0.00 0.00 0.00 4.45 R
4805 6078 0.475906 GGGATAGGCCAGCAGATGTT 59.524 55.0 5.01 0.00 38.95 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.822701 GTCCCCGCCAATCGTTCC 60.823 66.667 0.00 0.00 36.19 3.62
37 38 1.134818 GCCAATCGTTCCCCCAAAATC 60.135 52.381 0.00 0.00 0.00 2.17
38 39 2.175202 CCAATCGTTCCCCCAAAATCA 58.825 47.619 0.00 0.00 0.00 2.57
40 41 1.847328 ATCGTTCCCCCAAAATCACC 58.153 50.000 0.00 0.00 0.00 4.02
49 53 2.684881 CCCCAAAATCACCTCTCATTCG 59.315 50.000 0.00 0.00 0.00 3.34
55 59 2.768253 TCACCTCTCATTCGCATGTT 57.232 45.000 0.00 0.00 0.00 2.71
56 60 3.057969 TCACCTCTCATTCGCATGTTT 57.942 42.857 0.00 0.00 0.00 2.83
58 62 3.436704 TCACCTCTCATTCGCATGTTTTC 59.563 43.478 0.00 0.00 0.00 2.29
62 66 4.154737 CCTCTCATTCGCATGTTTTCTTCA 59.845 41.667 0.00 0.00 0.00 3.02
64 68 3.825308 TCATTCGCATGTTTTCTTCAGC 58.175 40.909 0.00 0.00 0.00 4.26
85 89 2.270297 AAATTGCCTCATCCGTGCGC 62.270 55.000 0.00 0.00 0.00 6.09
116 120 4.929707 CCCGTGGGGCCGCTATTC 62.930 72.222 21.80 7.91 35.35 1.75
118 122 4.929707 CGTGGGGCCGCTATTCCC 62.930 72.222 21.80 2.85 41.87 3.97
207 215 1.967597 GAAGCCTCGTAAACCGCAGC 61.968 60.000 0.00 0.00 36.19 5.25
291 309 1.147376 CGAAGTCCACCACCAACCA 59.853 57.895 0.00 0.00 0.00 3.67
292 310 0.250727 CGAAGTCCACCACCAACCAT 60.251 55.000 0.00 0.00 0.00 3.55
293 311 1.534729 GAAGTCCACCACCAACCATC 58.465 55.000 0.00 0.00 0.00 3.51
294 312 0.112412 AAGTCCACCACCAACCATCC 59.888 55.000 0.00 0.00 0.00 3.51
295 313 1.304134 GTCCACCACCAACCATCCC 60.304 63.158 0.00 0.00 0.00 3.85
296 314 2.037208 CCACCACCAACCATCCCC 59.963 66.667 0.00 0.00 0.00 4.81
297 315 2.037208 CACCACCAACCATCCCCC 59.963 66.667 0.00 0.00 0.00 5.40
729 826 2.986413 CCTCTCCCGCCGATCGAT 60.986 66.667 18.66 0.00 41.67 3.59
732 829 1.917782 CTCTCCCGCCGATCGATCTC 61.918 65.000 22.43 13.01 41.67 2.75
733 830 2.983930 CTCCCGCCGATCGATCTCC 61.984 68.421 22.43 12.06 41.67 3.71
734 831 4.057428 CCCGCCGATCGATCTCCC 62.057 72.222 22.43 9.74 41.67 4.30
735 832 2.986413 CCGCCGATCGATCTCCCT 60.986 66.667 22.43 0.00 41.67 4.20
736 833 2.563942 CGCCGATCGATCTCCCTC 59.436 66.667 22.43 6.52 41.67 4.30
1160 1260 4.778415 CTGGCTGGACGACGACGG 62.778 72.222 12.58 0.00 44.46 4.79
1175 1275 4.731612 CGGCGACTGTGAGCTGCT 62.732 66.667 0.00 0.00 32.63 4.24
1200 1300 0.836400 ATCCCATCCCTATCGCCGTT 60.836 55.000 0.00 0.00 0.00 4.44
1274 1404 0.323629 GTTGTCGACCAGATTGGGGA 59.676 55.000 14.12 0.00 43.37 4.81
1305 1435 2.952310 GGACAAGCAGATTGGGGTTATC 59.048 50.000 2.92 0.00 43.68 1.75
1361 1491 2.827322 TCCTGTTGCAAAATGGAGATGG 59.173 45.455 0.00 0.00 0.00 3.51
1380 1510 1.226746 GTCAGGGAAACAGTGAACCG 58.773 55.000 0.00 0.00 0.00 4.44
1405 1535 1.135315 CGGATTTCTCGACACCGGTTA 60.135 52.381 2.97 0.00 39.92 2.85
1419 1549 0.391263 CGGTTACTTCACAGGCTCCC 60.391 60.000 0.00 0.00 0.00 4.30
1430 1560 1.927527 AGGCTCCCCTTCAGCATGT 60.928 57.895 0.00 0.00 38.74 3.21
1521 1651 2.158871 TGGTATGGTAATGGCGGAGAAC 60.159 50.000 0.00 0.00 0.00 3.01
1617 1747 8.043710 ACTAAATCGTTCCAAGAATTCTCAGAT 58.956 33.333 8.78 5.19 0.00 2.90
1619 1749 6.917217 ATCGTTCCAAGAATTCTCAGATTC 57.083 37.500 8.78 4.84 36.50 2.52
1629 1759 1.195115 TCTCAGATTCCGTTCCCCAG 58.805 55.000 0.00 0.00 0.00 4.45
1664 1800 3.657398 TGATGATCATGAGGTTTGGCT 57.343 42.857 14.30 0.00 0.00 4.75
1695 1831 3.209410 CATGGAGGAGATTAGTGTTGCC 58.791 50.000 0.00 0.00 0.00 4.52
1709 1845 4.690122 AGTGTTGCCGATTATACCACTAC 58.310 43.478 0.00 0.00 0.00 2.73
1712 1848 5.919141 GTGTTGCCGATTATACCACTACTAG 59.081 44.000 0.00 0.00 0.00 2.57
1742 1878 2.271800 GGACGCTTCAGAATGTACTGG 58.728 52.381 0.00 0.00 38.31 4.00
1760 1896 1.227674 GCACCGAGCTTCCCTATGG 60.228 63.158 0.00 0.00 41.15 2.74
1777 1913 1.084018 TGGGGATCTTGAAGGGCTTT 58.916 50.000 0.00 0.00 0.00 3.51
1796 1932 5.349543 GGCTTTTGTTGCAATTAGAGAATGG 59.650 40.000 0.59 0.00 0.00 3.16
1800 1936 4.025360 TGTTGCAATTAGAGAATGGCCAT 58.975 39.130 14.09 14.09 40.82 4.40
1802 1938 3.900971 TGCAATTAGAGAATGGCCATGA 58.099 40.909 21.63 1.74 40.82 3.07
1807 1943 7.069702 TGCAATTAGAGAATGGCCATGAAAATA 59.930 33.333 21.63 6.42 40.82 1.40
1810 1946 5.954296 AGAGAATGGCCATGAAAATATCG 57.046 39.130 21.63 0.00 0.00 2.92
1814 1950 5.829924 AGAATGGCCATGAAAATATCGAACT 59.170 36.000 21.63 0.00 0.00 3.01
1828 1967 3.422417 TCGAACTAGCAGATTTCTCCG 57.578 47.619 0.00 0.00 0.00 4.63
1837 1976 2.935238 GCAGATTTCTCCGCACCAGTTA 60.935 50.000 0.00 0.00 0.00 2.24
1841 1980 1.334160 TTCTCCGCACCAGTTACTCA 58.666 50.000 0.00 0.00 0.00 3.41
1860 1999 4.778579 CTCATCATGAGTTCCATCAGGTT 58.221 43.478 6.48 0.00 39.58 3.50
1863 2002 3.084039 TCATGAGTTCCATCAGGTTTGC 58.916 45.455 0.00 0.00 32.90 3.68
1874 2013 4.320788 CCATCAGGTTTGCTTTGTTCTCTC 60.321 45.833 0.00 0.00 0.00 3.20
1888 2027 9.677567 GCTTTGTTCTCTCTAGTCTATATTCTG 57.322 37.037 0.00 0.00 0.00 3.02
1929 2071 5.703978 TTGAAAAATCTGGAATGCTCGAA 57.296 34.783 0.00 0.00 0.00 3.71
1933 2075 3.705043 AATCTGGAATGCTCGAAATGC 57.295 42.857 0.00 0.00 0.00 3.56
1958 2100 5.156355 GCGTACTTGTGTAACTGCTAGTTA 58.844 41.667 5.10 5.10 39.51 2.24
1960 2102 6.605849 CGTACTTGTGTAACTGCTAGTTAGA 58.394 40.000 8.44 5.70 40.95 2.10
1973 2115 4.640789 CTAGTTAGACTAGCCACAGTGG 57.359 50.000 16.16 16.16 41.36 4.00
1974 2116 2.180276 AGTTAGACTAGCCACAGTGGG 58.820 52.381 21.77 7.25 38.19 4.61
1975 2117 2.176889 GTTAGACTAGCCACAGTGGGA 58.823 52.381 21.77 0.00 38.19 4.37
1976 2118 2.145397 TAGACTAGCCACAGTGGGAG 57.855 55.000 21.77 0.00 38.19 4.30
1977 2119 0.115349 AGACTAGCCACAGTGGGAGT 59.885 55.000 21.77 2.87 38.19 3.85
1978 2120 1.358103 AGACTAGCCACAGTGGGAGTA 59.642 52.381 21.77 0.00 38.19 2.59
1979 2121 2.176889 GACTAGCCACAGTGGGAGTAA 58.823 52.381 21.77 0.00 38.19 2.24
1980 2122 1.900486 ACTAGCCACAGTGGGAGTAAC 59.100 52.381 21.77 3.06 38.19 2.50
1981 2123 2.180276 CTAGCCACAGTGGGAGTAACT 58.820 52.381 21.77 10.69 38.19 2.24
1982 2124 1.435256 AGCCACAGTGGGAGTAACTT 58.565 50.000 21.77 0.00 38.19 2.66
1983 2125 1.348036 AGCCACAGTGGGAGTAACTTC 59.652 52.381 21.77 0.78 38.19 3.01
1984 2126 1.071699 GCCACAGTGGGAGTAACTTCA 59.928 52.381 21.77 0.00 38.19 3.02
1985 2127 2.872038 GCCACAGTGGGAGTAACTTCAG 60.872 54.545 21.77 0.00 38.19 3.02
1986 2128 2.417719 CACAGTGGGAGTAACTTCAGC 58.582 52.381 0.00 0.00 0.00 4.26
1987 2129 2.047061 ACAGTGGGAGTAACTTCAGCA 58.953 47.619 0.00 0.00 0.00 4.41
1988 2130 2.037772 ACAGTGGGAGTAACTTCAGCAG 59.962 50.000 0.00 0.00 0.00 4.24
1989 2131 2.037772 CAGTGGGAGTAACTTCAGCAGT 59.962 50.000 0.00 0.00 37.30 4.40
1990 2132 3.258372 CAGTGGGAGTAACTTCAGCAGTA 59.742 47.826 0.00 0.00 32.94 2.74
1991 2133 3.901844 AGTGGGAGTAACTTCAGCAGTAA 59.098 43.478 0.00 0.00 32.94 2.24
1992 2134 4.532521 AGTGGGAGTAACTTCAGCAGTAAT 59.467 41.667 0.00 0.00 32.94 1.89
1993 2135 5.720041 AGTGGGAGTAACTTCAGCAGTAATA 59.280 40.000 0.00 0.00 32.94 0.98
1994 2136 6.384305 AGTGGGAGTAACTTCAGCAGTAATAT 59.616 38.462 0.00 0.00 32.94 1.28
1995 2137 6.702282 GTGGGAGTAACTTCAGCAGTAATATC 59.298 42.308 0.00 0.00 32.94 1.63
1996 2138 5.921408 GGGAGTAACTTCAGCAGTAATATCG 59.079 44.000 0.00 0.00 32.94 2.92
1997 2139 6.238953 GGGAGTAACTTCAGCAGTAATATCGA 60.239 42.308 0.00 0.00 32.94 3.59
1998 2140 6.858993 GGAGTAACTTCAGCAGTAATATCGAG 59.141 42.308 0.00 0.00 32.94 4.04
1999 2141 7.336161 AGTAACTTCAGCAGTAATATCGAGT 57.664 36.000 0.00 0.00 32.94 4.18
2000 2142 7.419204 AGTAACTTCAGCAGTAATATCGAGTC 58.581 38.462 0.00 0.00 32.94 3.36
2001 2143 5.189659 ACTTCAGCAGTAATATCGAGTCC 57.810 43.478 0.00 0.00 31.97 3.85
2002 2144 4.645136 ACTTCAGCAGTAATATCGAGTCCA 59.355 41.667 0.00 0.00 31.97 4.02
2003 2145 5.127194 ACTTCAGCAGTAATATCGAGTCCAA 59.873 40.000 0.00 0.00 31.97 3.53
2004 2146 4.933330 TCAGCAGTAATATCGAGTCCAAC 58.067 43.478 0.00 0.00 0.00 3.77
2005 2147 4.645136 TCAGCAGTAATATCGAGTCCAACT 59.355 41.667 0.00 0.00 0.00 3.16
2006 2148 4.979197 CAGCAGTAATATCGAGTCCAACTC 59.021 45.833 0.00 0.00 41.71 3.01
2007 2149 4.645136 AGCAGTAATATCGAGTCCAACTCA 59.355 41.667 7.78 0.00 45.30 3.41
2008 2150 4.979197 GCAGTAATATCGAGTCCAACTCAG 59.021 45.833 7.78 1.37 45.30 3.35
2009 2151 4.979197 CAGTAATATCGAGTCCAACTCAGC 59.021 45.833 7.78 0.00 45.30 4.26
2010 2152 4.645136 AGTAATATCGAGTCCAACTCAGCA 59.355 41.667 7.78 0.00 45.30 4.41
2011 2153 4.471904 AATATCGAGTCCAACTCAGCAA 57.528 40.909 7.78 0.00 45.30 3.91
2012 2154 4.679373 ATATCGAGTCCAACTCAGCAAT 57.321 40.909 7.78 0.00 45.30 3.56
2013 2155 2.839486 TCGAGTCCAACTCAGCAATT 57.161 45.000 7.78 0.00 45.30 2.32
2014 2156 3.126001 TCGAGTCCAACTCAGCAATTT 57.874 42.857 7.78 0.00 45.30 1.82
2015 2157 3.476552 TCGAGTCCAACTCAGCAATTTT 58.523 40.909 7.78 0.00 45.30 1.82
2016 2158 3.250762 TCGAGTCCAACTCAGCAATTTTG 59.749 43.478 7.78 0.00 45.30 2.44
2017 2159 3.311966 GAGTCCAACTCAGCAATTTTGC 58.688 45.455 7.19 7.19 44.45 3.68
2050 2192 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
2051 2193 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
2052 2194 8.750298 ACTTAGCTAGTTACTGTAACATCACAT 58.250 33.333 27.12 11.85 41.07 3.21
2053 2195 8.926715 TTAGCTAGTTACTGTAACATCACATG 57.073 34.615 27.12 12.57 41.07 3.21
2055 2197 7.036220 AGCTAGTTACTGTAACATCACATGTC 58.964 38.462 27.12 9.51 44.07 3.06
2056 2198 6.255887 GCTAGTTACTGTAACATCACATGTCC 59.744 42.308 27.12 1.73 44.07 4.02
2057 2199 5.488341 AGTTACTGTAACATCACATGTCCC 58.512 41.667 27.12 1.55 44.07 4.46
2058 2200 5.012664 AGTTACTGTAACATCACATGTCCCA 59.987 40.000 27.12 0.00 44.07 4.37
2059 2201 4.365514 ACTGTAACATCACATGTCCCAA 57.634 40.909 0.00 0.00 44.07 4.12
2060 2202 4.922206 ACTGTAACATCACATGTCCCAAT 58.078 39.130 0.00 0.00 44.07 3.16
2061 2203 4.701651 ACTGTAACATCACATGTCCCAATG 59.298 41.667 0.00 0.45 44.07 2.82
2062 2204 3.443329 TGTAACATCACATGTCCCAATGC 59.557 43.478 0.00 0.00 44.07 3.56
2063 2205 2.219080 ACATCACATGTCCCAATGCA 57.781 45.000 0.00 0.00 39.92 3.96
2064 2206 2.527497 ACATCACATGTCCCAATGCAA 58.473 42.857 0.00 0.00 39.92 4.08
2065 2207 3.101437 ACATCACATGTCCCAATGCAAT 58.899 40.909 0.00 0.00 39.92 3.56
2066 2208 4.279982 ACATCACATGTCCCAATGCAATA 58.720 39.130 0.00 0.00 39.92 1.90
2067 2209 4.897076 ACATCACATGTCCCAATGCAATAT 59.103 37.500 0.00 0.00 39.92 1.28
2068 2210 4.922471 TCACATGTCCCAATGCAATATG 57.078 40.909 0.00 0.00 0.00 1.78
2069 2211 4.534797 TCACATGTCCCAATGCAATATGA 58.465 39.130 0.00 0.00 0.00 2.15
2070 2212 4.581409 TCACATGTCCCAATGCAATATGAG 59.419 41.667 0.00 0.00 0.00 2.90
2071 2213 4.340097 CACATGTCCCAATGCAATATGAGT 59.660 41.667 0.00 0.00 0.00 3.41
2072 2214 4.581824 ACATGTCCCAATGCAATATGAGTC 59.418 41.667 0.00 0.00 0.00 3.36
2073 2215 4.508551 TGTCCCAATGCAATATGAGTCT 57.491 40.909 0.00 0.00 0.00 3.24
2074 2216 5.628797 TGTCCCAATGCAATATGAGTCTA 57.371 39.130 0.00 0.00 0.00 2.59
2075 2217 6.191657 TGTCCCAATGCAATATGAGTCTAT 57.808 37.500 0.00 0.00 0.00 1.98
2076 2218 7.315066 TGTCCCAATGCAATATGAGTCTATA 57.685 36.000 0.00 0.00 0.00 1.31
2077 2219 7.744733 TGTCCCAATGCAATATGAGTCTATAA 58.255 34.615 0.00 0.00 0.00 0.98
2078 2220 7.661437 TGTCCCAATGCAATATGAGTCTATAAC 59.339 37.037 0.00 0.00 0.00 1.89
2079 2221 7.119846 GTCCCAATGCAATATGAGTCTATAACC 59.880 40.741 0.00 0.00 0.00 2.85
2080 2222 7.017551 TCCCAATGCAATATGAGTCTATAACCT 59.982 37.037 0.00 0.00 0.00 3.50
2081 2223 8.321353 CCCAATGCAATATGAGTCTATAACCTA 58.679 37.037 0.00 0.00 0.00 3.08
2082 2224 9.725019 CCAATGCAATATGAGTCTATAACCTAA 57.275 33.333 0.00 0.00 0.00 2.69
2100 2242 9.754382 ATAACCTAATAAATGAAGCTTTGCATG 57.246 29.630 0.00 0.00 0.00 4.06
2101 2243 7.174107 ACCTAATAAATGAAGCTTTGCATGT 57.826 32.000 0.00 0.00 0.00 3.21
2102 2244 7.614494 ACCTAATAAATGAAGCTTTGCATGTT 58.386 30.769 0.00 1.51 0.00 2.71
2103 2245 8.748412 ACCTAATAAATGAAGCTTTGCATGTTA 58.252 29.630 0.00 3.50 0.00 2.41
2104 2246 9.023967 CCTAATAAATGAAGCTTTGCATGTTAC 57.976 33.333 0.00 0.00 0.00 2.50
2105 2247 7.832503 AATAAATGAAGCTTTGCATGTTACC 57.167 32.000 0.00 0.00 0.00 2.85
2106 2248 4.870123 AATGAAGCTTTGCATGTTACCA 57.130 36.364 0.00 0.00 0.00 3.25
2107 2249 3.641437 TGAAGCTTTGCATGTTACCAC 57.359 42.857 0.00 0.00 0.00 4.16
2108 2250 2.954989 TGAAGCTTTGCATGTTACCACA 59.045 40.909 0.00 0.00 37.31 4.17
2109 2251 3.243367 TGAAGCTTTGCATGTTACCACAC 60.243 43.478 0.00 0.00 35.03 3.82
2110 2252 2.586425 AGCTTTGCATGTTACCACACT 58.414 42.857 0.00 0.00 35.03 3.55
2111 2253 2.958355 AGCTTTGCATGTTACCACACTT 59.042 40.909 0.00 0.00 35.03 3.16
2112 2254 4.141287 AGCTTTGCATGTTACCACACTTA 58.859 39.130 0.00 0.00 35.03 2.24
2113 2255 4.766891 AGCTTTGCATGTTACCACACTTAT 59.233 37.500 0.00 0.00 35.03 1.73
2114 2256 4.858692 GCTTTGCATGTTACCACACTTATG 59.141 41.667 0.00 0.00 35.03 1.90
2115 2257 5.564651 GCTTTGCATGTTACCACACTTATGT 60.565 40.000 0.00 0.00 40.80 2.29
2116 2258 6.398234 TTTGCATGTTACCACACTTATGTT 57.602 33.333 0.00 0.00 36.72 2.71
2117 2259 7.511959 TTTGCATGTTACCACACTTATGTTA 57.488 32.000 0.00 0.00 36.72 2.41
2118 2260 6.489127 TGCATGTTACCACACTTATGTTAC 57.511 37.500 0.00 0.00 36.72 2.50
2119 2261 6.234920 TGCATGTTACCACACTTATGTTACT 58.765 36.000 0.00 0.00 36.72 2.24
2120 2262 7.387643 TGCATGTTACCACACTTATGTTACTA 58.612 34.615 0.00 0.00 36.72 1.82
2121 2263 7.332430 TGCATGTTACCACACTTATGTTACTAC 59.668 37.037 0.00 0.00 36.72 2.73
2122 2264 7.201582 GCATGTTACCACACTTATGTTACTACC 60.202 40.741 0.00 0.00 36.72 3.18
2123 2265 6.700352 TGTTACCACACTTATGTTACTACCC 58.300 40.000 0.00 0.00 36.72 3.69
2124 2266 6.269538 TGTTACCACACTTATGTTACTACCCA 59.730 38.462 0.00 0.00 36.72 4.51
2125 2267 5.156608 ACCACACTTATGTTACTACCCAC 57.843 43.478 0.00 0.00 36.72 4.61
2126 2268 4.842380 ACCACACTTATGTTACTACCCACT 59.158 41.667 0.00 0.00 36.72 4.00
2127 2269 6.018469 ACCACACTTATGTTACTACCCACTA 58.982 40.000 0.00 0.00 36.72 2.74
2128 2270 6.670902 ACCACACTTATGTTACTACCCACTAT 59.329 38.462 0.00 0.00 36.72 2.12
2129 2271 6.984474 CCACACTTATGTTACTACCCACTATG 59.016 42.308 0.00 0.00 36.72 2.23
2130 2272 7.147794 CCACACTTATGTTACTACCCACTATGA 60.148 40.741 0.00 0.00 36.72 2.15
2131 2273 8.255206 CACACTTATGTTACTACCCACTATGAA 58.745 37.037 0.00 0.00 36.72 2.57
2132 2274 8.475639 ACACTTATGTTACTACCCACTATGAAG 58.524 37.037 0.00 0.00 34.46 3.02
2133 2275 7.926555 CACTTATGTTACTACCCACTATGAAGG 59.073 40.741 0.00 0.00 0.00 3.46
2134 2276 7.622479 ACTTATGTTACTACCCACTATGAAGGT 59.378 37.037 0.00 0.00 37.69 3.50
2135 2277 9.139734 CTTATGTTACTACCCACTATGAAGGTA 57.860 37.037 0.00 0.00 35.02 3.08
2142 2284 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
2143 2285 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
2144 2286 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
2146 2288 7.287235 ACCCACTATGAAGGTAGTAACATAGTC 59.713 40.741 13.37 0.00 46.61 2.59
2147 2289 7.506261 CCCACTATGAAGGTAGTAACATAGTCT 59.494 40.741 13.37 0.00 46.61 3.24
2148 2290 9.570468 CCACTATGAAGGTAGTAACATAGTCTA 57.430 37.037 13.37 0.00 46.61 2.59
2150 2292 9.796180 ACTATGAAGGTAGTAACATAGTCTAGG 57.204 37.037 0.00 0.00 46.61 3.02
2151 2293 9.233649 CTATGAAGGTAGTAACATAGTCTAGGG 57.766 40.741 0.00 0.00 38.06 3.53
2152 2294 7.217028 TGAAGGTAGTAACATAGTCTAGGGA 57.783 40.000 0.00 0.00 0.00 4.20
2153 2295 7.823635 TGAAGGTAGTAACATAGTCTAGGGAT 58.176 38.462 0.00 0.00 0.00 3.85
2154 2296 8.952602 TGAAGGTAGTAACATAGTCTAGGGATA 58.047 37.037 0.00 0.00 0.00 2.59
2155 2297 9.978336 GAAGGTAGTAACATAGTCTAGGGATAT 57.022 37.037 0.00 0.00 0.00 1.63
2156 2298 9.756571 AAGGTAGTAACATAGTCTAGGGATATG 57.243 37.037 0.00 7.70 33.93 1.78
2157 2299 8.902881 AGGTAGTAACATAGTCTAGGGATATGT 58.097 37.037 8.65 8.65 40.86 2.29
2158 2300 8.958506 GGTAGTAACATAGTCTAGGGATATGTG 58.041 40.741 12.94 0.00 39.46 3.21
2159 2301 9.517868 GTAGTAACATAGTCTAGGGATATGTGT 57.482 37.037 12.94 8.29 39.46 3.72
2163 2305 8.958060 AACATAGTCTAGGGATATGTGTATGT 57.042 34.615 12.94 0.00 39.46 2.29
2164 2306 8.958060 ACATAGTCTAGGGATATGTGTATGTT 57.042 34.615 11.97 0.00 38.40 2.71
2169 2311 9.742144 AGTCTAGGGATATGTGTATGTTACTAG 57.258 37.037 0.00 0.00 0.00 2.57
2170 2312 9.517868 GTCTAGGGATATGTGTATGTTACTAGT 57.482 37.037 0.00 0.00 0.00 2.57
2171 2313 9.516546 TCTAGGGATATGTGTATGTTACTAGTG 57.483 37.037 5.39 0.00 0.00 2.74
2172 2314 9.298250 CTAGGGATATGTGTATGTTACTAGTGT 57.702 37.037 5.39 0.00 0.00 3.55
2174 2316 9.075678 AGGGATATGTGTATGTTACTAGTGTAC 57.924 37.037 5.39 4.35 0.00 2.90
2175 2317 9.075678 GGGATATGTGTATGTTACTAGTGTACT 57.924 37.037 5.39 0.00 0.00 2.73
2180 2322 8.570068 TGTGTATGTTACTAGTGTACTCATCA 57.430 34.615 5.39 0.00 31.22 3.07
2181 2323 9.185680 TGTGTATGTTACTAGTGTACTCATCAT 57.814 33.333 5.39 0.00 31.22 2.45
2185 2327 8.932945 ATGTTACTAGTGTACTCATCATTGTG 57.067 34.615 5.39 0.00 0.00 3.33
2186 2328 7.320399 TGTTACTAGTGTACTCATCATTGTGG 58.680 38.462 5.39 0.00 0.00 4.17
2187 2329 4.759782 ACTAGTGTACTCATCATTGTGGC 58.240 43.478 0.00 0.00 0.00 5.01
2188 2330 3.988976 AGTGTACTCATCATTGTGGCT 57.011 42.857 0.00 0.00 0.00 4.75
2189 2331 5.656859 ACTAGTGTACTCATCATTGTGGCTA 59.343 40.000 0.00 0.00 0.00 3.93
2190 2332 5.016051 AGTGTACTCATCATTGTGGCTAG 57.984 43.478 0.00 0.00 0.00 3.42
2191 2333 4.467795 AGTGTACTCATCATTGTGGCTAGT 59.532 41.667 0.00 0.00 0.00 2.57
2192 2334 4.806247 GTGTACTCATCATTGTGGCTAGTC 59.194 45.833 0.00 0.00 0.00 2.59
2193 2335 4.711846 TGTACTCATCATTGTGGCTAGTCT 59.288 41.667 0.00 0.00 0.00 3.24
2194 2336 4.833478 ACTCATCATTGTGGCTAGTCTT 57.167 40.909 0.00 0.00 0.00 3.01
2254 2396 4.095483 GCCTTCATCCTCACACATTTACAG 59.905 45.833 0.00 0.00 0.00 2.74
2410 2555 7.148340 GCTGTTATATCAGTGTTCAAGAAAGCT 60.148 37.037 11.53 0.00 37.70 3.74
2740 3824 7.930217 GCTATGTGCTATGTTTCCTATTTTCA 58.070 34.615 0.00 0.00 38.95 2.69
2764 3848 8.901793 TCATGTGCATATTATTCAAAAGCAGTA 58.098 29.630 0.00 0.00 0.00 2.74
2820 3905 1.679944 GCCCATTGCTCTAAGCTGTGA 60.680 52.381 0.11 0.00 42.97 3.58
2921 4006 1.745232 TTGGCTTACATAGGTTGGCG 58.255 50.000 0.00 0.00 0.00 5.69
2977 4062 5.923733 TCAACTCTGTAGATCCTTCTTCC 57.076 43.478 0.00 0.00 33.17 3.46
3011 4096 3.791973 ACAGAGATCTTGATCCACGAC 57.208 47.619 0.00 0.00 0.00 4.34
3076 4161 3.645212 TGCCATTGAATTGGGAAACAGAA 59.355 39.130 0.00 0.00 33.72 3.02
3098 4183 1.064060 GCACTGAAGAAACAAGTGCGT 59.936 47.619 10.85 0.00 44.67 5.24
3196 4284 4.361783 TGGATCCAGAAGATGTAGGACAA 58.638 43.478 11.44 0.00 34.42 3.18
3197 4285 4.162320 TGGATCCAGAAGATGTAGGACAAC 59.838 45.833 11.44 0.00 34.42 3.32
3198 4286 4.162320 GGATCCAGAAGATGTAGGACAACA 59.838 45.833 6.95 0.00 34.42 3.33
3318 4406 0.546122 TTTGACACAGCTGGAGTGGT 59.454 50.000 19.93 7.77 41.21 4.16
3322 4410 1.302033 CACAGCTGGAGTGGTGACC 60.302 63.158 19.93 0.00 38.63 4.02
3355 4443 4.150897 TGGTTATCTTGGTGATAGTGGC 57.849 45.455 0.00 0.00 38.70 5.01
3448 4536 6.455360 AACCACATGAATCATAACCATGTC 57.545 37.500 0.00 0.00 46.23 3.06
3498 4586 7.846644 AATGACTTCATTTTGTTTTGCAAGA 57.153 28.000 0.00 0.00 43.48 3.02
3626 4721 1.740025 GAGCAACCACATAACCTGAGC 59.260 52.381 0.00 0.00 0.00 4.26
3659 4754 2.821969 ACAGTCATGGTTCAATTCAGCC 59.178 45.455 0.00 0.00 0.00 4.85
3716 4811 0.040067 CTCTGGCGGCTGAAAACAAC 60.040 55.000 18.83 0.00 0.00 3.32
3803 4898 1.146263 CGCCCCAGTTATCCAGGTC 59.854 63.158 0.00 0.00 0.00 3.85
3812 4907 4.467795 CCAGTTATCCAGGTCAGAAGAAGA 59.532 45.833 0.00 0.00 0.00 2.87
3815 4910 2.704190 TCCAGGTCAGAAGAAGAGGT 57.296 50.000 0.00 0.00 0.00 3.85
3831 4926 2.581354 GTGCAGGGCTGATCTCGT 59.419 61.111 0.00 0.00 0.00 4.18
3912 5007 1.067354 CAATCAAGTTCTGCAAGGGGC 60.067 52.381 0.00 0.00 45.13 5.80
3920 5015 0.998928 TCTGCAAGGGGCTATGGAAA 59.001 50.000 0.00 0.00 45.15 3.13
3921 5016 1.106285 CTGCAAGGGGCTATGGAAAC 58.894 55.000 0.00 0.00 45.15 2.78
3935 5033 3.981071 TGGAAACCCTCTACATGACAG 57.019 47.619 0.00 0.00 0.00 3.51
3941 5039 3.303938 ACCCTCTACATGACAGGATGAG 58.696 50.000 0.00 0.94 39.69 2.90
3942 5040 3.052566 ACCCTCTACATGACAGGATGAGA 60.053 47.826 0.00 4.22 39.69 3.27
3943 5041 3.573538 CCCTCTACATGACAGGATGAGAG 59.426 52.174 0.00 11.28 39.69 3.20
3944 5042 3.573538 CCTCTACATGACAGGATGAGAGG 59.426 52.174 16.96 16.96 39.69 3.69
3949 5047 2.479566 TGACAGGATGAGAGGCAAAC 57.520 50.000 0.00 0.00 39.69 2.93
3950 5048 1.003580 TGACAGGATGAGAGGCAAACC 59.996 52.381 0.00 0.00 39.69 3.27
3953 5051 2.108952 ACAGGATGAGAGGCAAACCTTT 59.891 45.455 0.00 0.00 44.12 3.11
3966 5064 3.374367 GCAAACCTTTCTCGACTTATCCC 59.626 47.826 0.00 0.00 0.00 3.85
3967 5065 3.521947 AACCTTTCTCGACTTATCCCG 57.478 47.619 0.00 0.00 0.00 5.14
3969 5067 1.755380 CCTTTCTCGACTTATCCCGGT 59.245 52.381 0.00 0.00 0.00 5.28
3978 5076 0.758734 CTTATCCCGGTGGCTGATCA 59.241 55.000 0.00 0.00 0.00 2.92
3981 5079 2.104572 ATCCCGGTGGCTGATCATCG 62.105 60.000 0.00 0.00 40.59 3.84
3983 5081 1.153369 CCGGTGGCTGATCATCGTT 60.153 57.895 0.00 0.00 39.40 3.85
3985 5083 1.491670 CGGTGGCTGATCATCGTTAG 58.508 55.000 0.00 0.00 36.60 2.34
3986 5084 1.067060 CGGTGGCTGATCATCGTTAGA 59.933 52.381 0.00 0.00 36.60 2.10
3989 5087 3.430929 GGTGGCTGATCATCGTTAGAACT 60.431 47.826 0.00 0.00 0.00 3.01
3990 5088 3.799420 GTGGCTGATCATCGTTAGAACTC 59.201 47.826 0.00 0.00 0.00 3.01
3991 5089 3.447229 TGGCTGATCATCGTTAGAACTCA 59.553 43.478 0.00 0.00 0.00 3.41
3992 5090 4.081697 TGGCTGATCATCGTTAGAACTCAA 60.082 41.667 0.00 0.00 0.00 3.02
3993 5091 4.505922 GGCTGATCATCGTTAGAACTCAAG 59.494 45.833 0.00 0.00 0.00 3.02
3994 5092 5.105752 GCTGATCATCGTTAGAACTCAAGT 58.894 41.667 0.00 0.00 0.00 3.16
3995 5093 5.231147 GCTGATCATCGTTAGAACTCAAGTC 59.769 44.000 0.00 0.00 0.00 3.01
3996 5094 6.516739 TGATCATCGTTAGAACTCAAGTCT 57.483 37.500 0.00 0.00 0.00 3.24
3997 5095 6.325596 TGATCATCGTTAGAACTCAAGTCTG 58.674 40.000 0.00 0.00 0.00 3.51
3998 5096 5.707242 TCATCGTTAGAACTCAAGTCTGT 57.293 39.130 0.00 0.00 0.00 3.41
4053 5151 2.558359 CCATTGGAAAAAGGCGAAGAGT 59.442 45.455 0.00 0.00 0.00 3.24
4317 5451 6.534475 AAATTCATGATAATGTGTGCCTGT 57.466 33.333 0.00 0.00 0.00 4.00
4323 5457 4.917385 TGATAATGTGTGCCTGTTTAGGT 58.083 39.130 0.00 0.00 46.41 3.08
4324 5458 4.699735 TGATAATGTGTGCCTGTTTAGGTG 59.300 41.667 0.00 0.00 46.41 4.00
4327 5461 2.729194 TGTGTGCCTGTTTAGGTGTTT 58.271 42.857 0.00 0.00 46.41 2.83
4328 5462 3.887352 TGTGTGCCTGTTTAGGTGTTTA 58.113 40.909 0.00 0.00 46.41 2.01
4378 5513 1.183676 GGATGGGCCCTTGATGCATC 61.184 60.000 25.70 20.14 0.00 3.91
4439 5574 4.217754 TGTAATTCGTTTGTTCAGCCAC 57.782 40.909 0.00 0.00 0.00 5.01
4463 5598 4.640771 TTCTGTGAAATTAGACAGGCCT 57.359 40.909 0.00 0.00 40.11 5.19
4473 5608 2.373335 AGACAGGCCTATCATCGACT 57.627 50.000 14.85 0.00 0.00 4.18
4487 5622 6.653273 ATCATCGACTACAATGTTTGACTG 57.347 37.500 0.00 0.00 0.00 3.51
4493 5628 5.036117 ACTACAATGTTTGACTGTGAGGT 57.964 39.130 0.00 0.00 0.00 3.85
4501 5636 3.912496 TTGACTGTGAGGTCCCATATG 57.088 47.619 0.00 0.00 35.54 1.78
4504 5639 1.487976 ACTGTGAGGTCCCATATGCAG 59.512 52.381 0.00 0.00 0.00 4.41
4507 5642 0.752658 TGAGGTCCCATATGCAGTCG 59.247 55.000 0.00 0.00 0.00 4.18
4523 5658 4.786068 TGCAGTCGTTTATACGTAACGTAC 59.214 41.667 18.50 15.15 45.07 3.67
4524 5659 4.202358 GCAGTCGTTTATACGTAACGTACC 59.798 45.833 18.50 10.07 45.07 3.34
4525 5660 4.430118 CAGTCGTTTATACGTAACGTACCG 59.570 45.833 18.50 8.60 45.07 4.02
4526 5661 4.092383 AGTCGTTTATACGTAACGTACCGT 59.908 41.667 18.50 15.40 45.07 4.83
4528 5663 5.953205 GTCGTTTATACGTAACGTACCGTTA 59.047 40.000 18.50 5.21 46.70 3.18
4569 5711 6.845302 TGCAACTTATGAAAATGTAGCTGAG 58.155 36.000 0.00 0.00 0.00 3.35
4573 5767 2.128771 TGAAAATGTAGCTGAGGCCC 57.871 50.000 0.00 0.00 39.73 5.80
4590 5784 5.656416 TGAGGCCCCAAAATATAGAGTTTTG 59.344 40.000 0.00 4.76 43.00 2.44
4617 5812 5.530915 TGTCATGAAAACCAAAGTAGACAGG 59.469 40.000 0.00 0.00 0.00 4.00
4622 5817 5.186021 TGAAAACCAAAGTAGACAGGCAAAA 59.814 36.000 0.00 0.00 0.00 2.44
4628 5823 7.378181 ACCAAAGTAGACAGGCAAAATTTATG 58.622 34.615 0.00 0.00 0.00 1.90
4629 5824 6.311200 CCAAAGTAGACAGGCAAAATTTATGC 59.689 38.462 13.59 13.59 43.08 3.14
4630 5825 6.588719 AAGTAGACAGGCAAAATTTATGCA 57.411 33.333 19.78 0.00 45.60 3.96
4637 5832 5.107133 CAGGCAAAATTTATGCAGAAGAGG 58.893 41.667 19.78 4.84 45.60 3.69
4644 5839 9.044150 CAAAATTTATGCAGAAGAGGAAAACAA 57.956 29.630 0.00 0.00 0.00 2.83
4649 5844 8.862325 TTATGCAGAAGAGGAAAACAAATAGA 57.138 30.769 0.00 0.00 0.00 1.98
4650 5845 7.765695 ATGCAGAAGAGGAAAACAAATAGAA 57.234 32.000 0.00 0.00 0.00 2.10
4651 5846 7.581213 TGCAGAAGAGGAAAACAAATAGAAA 57.419 32.000 0.00 0.00 0.00 2.52
4653 5848 8.137437 TGCAGAAGAGGAAAACAAATAGAAAAG 58.863 33.333 0.00 0.00 0.00 2.27
4655 5850 8.850156 CAGAAGAGGAAAACAAATAGAAAAGGA 58.150 33.333 0.00 0.00 0.00 3.36
4656 5851 9.421399 AGAAGAGGAAAACAAATAGAAAAGGAA 57.579 29.630 0.00 0.00 0.00 3.36
4657 5852 9.464714 GAAGAGGAAAACAAATAGAAAAGGAAC 57.535 33.333 0.00 0.00 0.00 3.62
4659 5854 9.862149 AGAGGAAAACAAATAGAAAAGGAACTA 57.138 29.630 0.00 0.00 38.49 2.24
4662 5857 9.678941 GGAAAACAAATAGAAAAGGAACTAGTG 57.321 33.333 0.00 0.00 38.49 2.74
4687 5957 4.508124 GGTCAAGAAGGCATATTCTACACG 59.492 45.833 0.00 0.00 38.59 4.49
4702 5972 1.448540 CACGGAGAAGGCGCATTCT 60.449 57.895 34.80 34.80 42.23 2.40
4711 5981 1.889573 GGCGCATTCTACAGGGAGC 60.890 63.158 10.83 0.00 0.00 4.70
4757 6029 1.266989 GGTTTGGACCGCTGAAAGAAG 59.733 52.381 0.00 0.00 35.91 2.85
4766 6038 2.535574 CCGCTGAAAGAAGCAAACAAAC 59.464 45.455 0.00 0.00 43.73 2.93
4767 6039 3.178267 CGCTGAAAGAAGCAAACAAACA 58.822 40.909 0.00 0.00 43.73 2.83
4768 6040 3.611986 CGCTGAAAGAAGCAAACAAACAA 59.388 39.130 0.00 0.00 43.73 2.83
4769 6041 4.091220 CGCTGAAAGAAGCAAACAAACAAA 59.909 37.500 0.00 0.00 43.73 2.83
4770 6042 5.220453 CGCTGAAAGAAGCAAACAAACAAAT 60.220 36.000 0.00 0.00 43.73 2.32
4772 6044 6.419980 TGAAAGAAGCAAACAAACAAATGG 57.580 33.333 0.00 0.00 0.00 3.16
4774 6046 3.807553 AGAAGCAAACAAACAAATGGGG 58.192 40.909 0.00 0.00 0.00 4.96
4775 6047 3.454082 AGAAGCAAACAAACAAATGGGGA 59.546 39.130 0.00 0.00 0.00 4.81
4777 6049 1.872952 GCAAACAAACAAATGGGGAGC 59.127 47.619 0.00 0.00 0.00 4.70
4778 6050 2.485302 GCAAACAAACAAATGGGGAGCT 60.485 45.455 0.00 0.00 0.00 4.09
4796 6069 5.122519 GGAGCTAGGAAAAATCTCTGAAGG 58.877 45.833 0.00 0.00 0.00 3.46
4911 6187 2.337879 TTTCGCCCACTGCAACCTCT 62.338 55.000 0.00 0.00 41.33 3.69
4913 6189 2.360475 GCCCACTGCAACCTCTCC 60.360 66.667 0.00 0.00 40.77 3.71
4914 6190 2.900106 GCCCACTGCAACCTCTCCT 61.900 63.158 0.00 0.00 40.77 3.69
4916 6192 1.079543 CCACTGCAACCTCTCCTCG 60.080 63.158 0.00 0.00 0.00 4.63
4917 6193 1.536073 CCACTGCAACCTCTCCTCGA 61.536 60.000 0.00 0.00 0.00 4.04
4918 6194 0.534412 CACTGCAACCTCTCCTCGAT 59.466 55.000 0.00 0.00 0.00 3.59
4919 6195 1.066573 CACTGCAACCTCTCCTCGATT 60.067 52.381 0.00 0.00 0.00 3.34
4922 6198 0.827368 GCAACCTCTCCTCGATTCCT 59.173 55.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.684881 CGAATGAGAGGTGATTTTGGGG 59.315 50.000 0.00 0.00 0.00 4.96
31 32 4.142534 ACATGCGAATGAGAGGTGATTTTG 60.143 41.667 11.32 0.00 0.00 2.44
37 38 3.438087 AGAAAACATGCGAATGAGAGGTG 59.562 43.478 11.32 0.00 0.00 4.00
38 39 3.679389 AGAAAACATGCGAATGAGAGGT 58.321 40.909 11.32 0.00 0.00 3.85
40 41 5.287170 TGAAGAAAACATGCGAATGAGAG 57.713 39.130 11.32 0.00 0.00 3.20
49 53 4.664891 GCAATTTCGCTGAAGAAAACATGC 60.665 41.667 0.00 13.23 42.52 4.06
55 59 2.884012 TGAGGCAATTTCGCTGAAGAAA 59.116 40.909 0.00 2.21 43.28 2.52
56 60 2.503331 TGAGGCAATTTCGCTGAAGAA 58.497 42.857 0.00 0.00 0.00 2.52
58 62 2.223433 GGATGAGGCAATTTCGCTGAAG 60.223 50.000 0.00 0.00 0.00 3.02
62 66 0.392998 ACGGATGAGGCAATTTCGCT 60.393 50.000 0.00 0.00 0.00 4.93
64 68 0.248215 GCACGGATGAGGCAATTTCG 60.248 55.000 0.00 0.00 0.00 3.46
101 105 4.929707 GGGAATAGCGGCCCCACG 62.930 72.222 7.11 0.00 39.89 4.94
207 215 0.250338 GCTCGGGTTAATAGGCCCTG 60.250 60.000 0.00 0.00 42.67 4.45
727 824 2.920384 GCGGAGGGGAGGGAGATC 60.920 72.222 0.00 0.00 0.00 2.75
728 825 4.565850 GGCGGAGGGGAGGGAGAT 62.566 72.222 0.00 0.00 0.00 2.75
1128 1228 1.612442 CCAGTCCTCCTCCCGGAAA 60.612 63.158 0.73 0.00 39.29 3.13
1160 1260 3.177920 CGAGCAGCTCACAGTCGC 61.178 66.667 22.49 0.00 0.00 5.19
1175 1275 1.561643 GATAGGGATGGGATCAGCGA 58.438 55.000 0.00 0.00 0.00 4.93
1200 1300 7.038445 ACTGTCACAGTTCTAGTAGGTAGACTA 60.038 40.741 3.98 0.00 42.59 2.59
1274 1404 1.417517 TCTGCTTGTCCACTGTCACAT 59.582 47.619 0.00 0.00 0.00 3.21
1305 1435 1.432514 CAATCTGGTCGTCCACTGTG 58.567 55.000 0.00 0.00 39.03 3.66
1332 1462 1.398692 TTTGCAACAGGAACACCTCC 58.601 50.000 0.00 0.00 45.81 4.30
1361 1491 1.226746 CGGTTCACTGTTTCCCTGAC 58.773 55.000 0.00 0.00 0.00 3.51
1405 1535 0.768221 TGAAGGGGAGCCTGTGAAGT 60.768 55.000 0.00 0.00 0.00 3.01
1419 1549 0.393537 GAGGGTGGACATGCTGAAGG 60.394 60.000 0.00 0.00 0.00 3.46
1521 1651 0.532862 AAGGGAGTTCAGTGCACGTG 60.533 55.000 12.28 12.28 0.00 4.49
1554 1684 3.261897 CCGATATTTCCATCAGTAGCCCT 59.738 47.826 0.00 0.00 0.00 5.19
1617 1747 3.551496 CTGCAGCTGGGGAACGGAA 62.551 63.158 17.12 0.00 0.00 4.30
1664 1800 1.634973 TCTCCTCCATGTTGGCATTGA 59.365 47.619 0.00 0.00 37.47 2.57
1719 1855 3.308053 CAGTACATTCTGAAGCGTCCATG 59.692 47.826 0.00 0.02 37.61 3.66
1720 1856 3.525537 CAGTACATTCTGAAGCGTCCAT 58.474 45.455 0.00 0.00 37.61 3.41
1733 1869 0.324943 AAGCTCGGTGCCAGTACATT 59.675 50.000 0.00 0.00 44.23 2.71
1742 1878 1.227674 CCATAGGGAAGCTCGGTGC 60.228 63.158 0.00 0.00 38.10 5.01
1760 1896 2.529632 ACAAAAGCCCTTCAAGATCCC 58.470 47.619 0.00 0.00 0.00 3.85
1765 1901 2.600470 TGCAACAAAAGCCCTTCAAG 57.400 45.000 0.00 0.00 0.00 3.02
1777 1913 3.831333 TGGCCATTCTCTAATTGCAACAA 59.169 39.130 0.00 0.00 35.86 2.83
1796 1932 5.466728 TCTGCTAGTTCGATATTTTCATGGC 59.533 40.000 0.00 0.00 0.00 4.40
1800 1936 8.948631 AGAAATCTGCTAGTTCGATATTTTCA 57.051 30.769 0.00 0.00 37.26 2.69
1802 1938 7.169982 CGGAGAAATCTGCTAGTTCGATATTTT 59.830 37.037 0.43 0.00 37.26 1.82
1807 1943 3.797184 GCGGAGAAATCTGCTAGTTCGAT 60.797 47.826 1.82 0.00 37.26 3.59
1810 1946 2.605366 GTGCGGAGAAATCTGCTAGTTC 59.395 50.000 10.19 0.00 42.22 3.01
1814 1950 0.901827 TGGTGCGGAGAAATCTGCTA 59.098 50.000 10.19 0.00 42.22 3.49
1841 1980 3.698040 GCAAACCTGATGGAACTCATGAT 59.302 43.478 0.00 0.00 35.97 2.45
1929 2071 3.186409 CAGTTACACAAGTACGCAGCATT 59.814 43.478 0.00 0.00 0.00 3.56
1933 2075 2.404215 AGCAGTTACACAAGTACGCAG 58.596 47.619 0.00 0.00 0.00 5.18
1958 2100 0.115349 ACTCCCACTGTGGCTAGTCT 59.885 55.000 21.47 3.44 35.79 3.24
1960 2102 1.900486 GTTACTCCCACTGTGGCTAGT 59.100 52.381 26.22 26.22 35.79 2.57
1961 2103 2.180276 AGTTACTCCCACTGTGGCTAG 58.820 52.381 21.47 20.51 35.79 3.42
1962 2104 2.320681 AGTTACTCCCACTGTGGCTA 57.679 50.000 21.47 10.31 35.79 3.93
1963 2105 1.348036 GAAGTTACTCCCACTGTGGCT 59.652 52.381 21.47 8.83 35.79 4.75
1964 2106 1.071699 TGAAGTTACTCCCACTGTGGC 59.928 52.381 21.47 6.54 35.79 5.01
1965 2107 2.872038 GCTGAAGTTACTCCCACTGTGG 60.872 54.545 20.01 20.01 37.25 4.17
1966 2108 2.224281 TGCTGAAGTTACTCCCACTGTG 60.224 50.000 0.00 0.00 0.00 3.66
1967 2109 2.037772 CTGCTGAAGTTACTCCCACTGT 59.962 50.000 0.00 0.00 0.00 3.55
1968 2110 2.037772 ACTGCTGAAGTTACTCCCACTG 59.962 50.000 0.00 0.00 34.57 3.66
1969 2111 2.330216 ACTGCTGAAGTTACTCCCACT 58.670 47.619 0.00 0.00 34.57 4.00
1970 2112 2.841442 ACTGCTGAAGTTACTCCCAC 57.159 50.000 0.00 0.00 34.57 4.61
1971 2113 6.461092 CGATATTACTGCTGAAGTTACTCCCA 60.461 42.308 0.00 0.00 40.56 4.37
1972 2114 5.921408 CGATATTACTGCTGAAGTTACTCCC 59.079 44.000 0.00 0.00 40.56 4.30
1973 2115 6.736123 TCGATATTACTGCTGAAGTTACTCC 58.264 40.000 0.00 0.00 40.56 3.85
1974 2116 7.419204 ACTCGATATTACTGCTGAAGTTACTC 58.581 38.462 0.00 0.00 40.56 2.59
1975 2117 7.336161 ACTCGATATTACTGCTGAAGTTACT 57.664 36.000 0.00 0.00 40.56 2.24
1976 2118 6.637658 GGACTCGATATTACTGCTGAAGTTAC 59.362 42.308 0.00 0.00 40.56 2.50
1977 2119 6.320418 TGGACTCGATATTACTGCTGAAGTTA 59.680 38.462 0.00 0.00 40.56 2.24
1978 2120 5.127194 TGGACTCGATATTACTGCTGAAGTT 59.873 40.000 0.00 0.00 40.56 2.66
1979 2121 4.645136 TGGACTCGATATTACTGCTGAAGT 59.355 41.667 0.00 0.00 43.40 3.01
1980 2122 5.188327 TGGACTCGATATTACTGCTGAAG 57.812 43.478 0.00 0.00 0.00 3.02
1981 2123 5.127194 AGTTGGACTCGATATTACTGCTGAA 59.873 40.000 0.00 0.00 0.00 3.02
1982 2124 4.645136 AGTTGGACTCGATATTACTGCTGA 59.355 41.667 0.00 0.00 0.00 4.26
1983 2125 4.938080 AGTTGGACTCGATATTACTGCTG 58.062 43.478 0.00 0.00 0.00 4.41
1984 2126 5.189659 GAGTTGGACTCGATATTACTGCT 57.810 43.478 0.00 0.00 35.28 4.24
2026 2168 8.118976 TGTGATGTTACAGTAACTAGCTAAGT 57.881 34.615 21.56 0.00 41.49 2.24
2027 2169 9.025020 CATGTGATGTTACAGTAACTAGCTAAG 57.975 37.037 21.56 6.36 39.38 2.18
2028 2170 8.528643 ACATGTGATGTTACAGTAACTAGCTAA 58.471 33.333 21.56 3.59 41.63 3.09
2029 2171 8.063200 ACATGTGATGTTACAGTAACTAGCTA 57.937 34.615 21.56 4.25 41.63 3.32
2030 2172 6.936279 ACATGTGATGTTACAGTAACTAGCT 58.064 36.000 21.56 6.57 41.63 3.32
2031 2173 6.255887 GGACATGTGATGTTACAGTAACTAGC 59.744 42.308 21.56 12.59 45.03 3.42
2032 2174 6.757010 GGGACATGTGATGTTACAGTAACTAG 59.243 42.308 21.56 8.25 45.03 2.57
2033 2175 6.211785 TGGGACATGTGATGTTACAGTAACTA 59.788 38.462 21.56 10.50 45.03 2.24
2034 2176 5.012664 TGGGACATGTGATGTTACAGTAACT 59.987 40.000 21.56 9.41 45.03 2.24
2035 2177 5.242434 TGGGACATGTGATGTTACAGTAAC 58.758 41.667 15.58 15.58 45.03 2.50
2036 2178 5.491323 TGGGACATGTGATGTTACAGTAA 57.509 39.130 1.15 0.00 45.03 2.24
2037 2179 5.491323 TTGGGACATGTGATGTTACAGTA 57.509 39.130 1.15 0.00 45.03 2.74
2038 2180 4.365514 TTGGGACATGTGATGTTACAGT 57.634 40.909 1.15 0.00 45.03 3.55
2039 2181 4.439153 GCATTGGGACATGTGATGTTACAG 60.439 45.833 1.15 0.00 45.03 2.74
2040 2182 3.443329 GCATTGGGACATGTGATGTTACA 59.557 43.478 1.15 0.00 45.03 2.41
2041 2183 3.443329 TGCATTGGGACATGTGATGTTAC 59.557 43.478 1.15 0.00 45.03 2.50
2042 2184 3.694926 TGCATTGGGACATGTGATGTTA 58.305 40.909 1.15 0.00 45.03 2.41
2043 2185 2.527497 TGCATTGGGACATGTGATGTT 58.473 42.857 1.15 0.00 45.03 2.71
2045 2187 3.812156 ATTGCATTGGGACATGTGATG 57.188 42.857 1.15 3.48 39.30 3.07
2046 2188 5.141910 TCATATTGCATTGGGACATGTGAT 58.858 37.500 1.15 0.00 39.30 3.06
2047 2189 4.534797 TCATATTGCATTGGGACATGTGA 58.465 39.130 1.15 0.00 39.30 3.58
2048 2190 4.340097 ACTCATATTGCATTGGGACATGTG 59.660 41.667 1.15 0.00 39.30 3.21
2049 2191 4.539726 ACTCATATTGCATTGGGACATGT 58.460 39.130 0.00 0.00 39.30 3.21
2050 2192 4.825634 AGACTCATATTGCATTGGGACATG 59.174 41.667 0.00 0.00 39.30 3.21
2051 2193 5.057843 AGACTCATATTGCATTGGGACAT 57.942 39.130 0.00 0.00 39.30 3.06
2052 2194 4.508551 AGACTCATATTGCATTGGGACA 57.491 40.909 0.00 0.00 0.00 4.02
2053 2195 7.119846 GGTTATAGACTCATATTGCATTGGGAC 59.880 40.741 0.00 0.00 0.00 4.46
2054 2196 7.017551 AGGTTATAGACTCATATTGCATTGGGA 59.982 37.037 0.00 0.00 0.00 4.37
2055 2197 7.170965 AGGTTATAGACTCATATTGCATTGGG 58.829 38.462 0.00 0.00 0.00 4.12
2056 2198 9.725019 TTAGGTTATAGACTCATATTGCATTGG 57.275 33.333 0.00 0.00 0.00 3.16
2074 2216 9.754382 CATGCAAAGCTTCATTTATTAGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
2075 2217 8.748412 ACATGCAAAGCTTCATTTATTAGGTTA 58.252 29.630 0.00 0.00 0.00 2.85
2076 2218 7.614494 ACATGCAAAGCTTCATTTATTAGGTT 58.386 30.769 0.00 0.00 0.00 3.50
2077 2219 7.174107 ACATGCAAAGCTTCATTTATTAGGT 57.826 32.000 0.00 0.00 0.00 3.08
2078 2220 9.023967 GTAACATGCAAAGCTTCATTTATTAGG 57.976 33.333 0.00 0.00 0.00 2.69
2079 2221 9.023967 GGTAACATGCAAAGCTTCATTTATTAG 57.976 33.333 0.00 0.00 0.00 1.73
2080 2222 8.526978 TGGTAACATGCAAAGCTTCATTTATTA 58.473 29.630 0.00 0.00 46.17 0.98
2081 2223 7.385267 TGGTAACATGCAAAGCTTCATTTATT 58.615 30.769 0.00 0.00 46.17 1.40
2082 2224 6.934056 TGGTAACATGCAAAGCTTCATTTAT 58.066 32.000 0.00 0.00 46.17 1.40
2083 2225 6.338214 TGGTAACATGCAAAGCTTCATTTA 57.662 33.333 0.00 0.18 46.17 1.40
2084 2226 5.212532 TGGTAACATGCAAAGCTTCATTT 57.787 34.783 0.00 1.04 46.17 2.32
2085 2227 4.870123 TGGTAACATGCAAAGCTTCATT 57.130 36.364 0.00 0.00 46.17 2.57
2100 2242 6.591448 GTGGGTAGTAACATAAGTGTGGTAAC 59.409 42.308 0.00 0.00 38.92 2.50
2101 2243 6.497954 AGTGGGTAGTAACATAAGTGTGGTAA 59.502 38.462 0.00 0.00 38.92 2.85
2102 2244 6.018469 AGTGGGTAGTAACATAAGTGTGGTA 58.982 40.000 0.00 0.00 38.92 3.25
2103 2245 4.842380 AGTGGGTAGTAACATAAGTGTGGT 59.158 41.667 0.00 0.00 38.92 4.16
2104 2246 5.416271 AGTGGGTAGTAACATAAGTGTGG 57.584 43.478 0.00 0.00 38.92 4.17
2105 2247 7.778083 TCATAGTGGGTAGTAACATAAGTGTG 58.222 38.462 0.00 0.00 38.92 3.82
2106 2248 7.966339 TCATAGTGGGTAGTAACATAAGTGT 57.034 36.000 0.00 0.00 41.28 3.55
2107 2249 7.926555 CCTTCATAGTGGGTAGTAACATAAGTG 59.073 40.741 0.00 0.00 0.00 3.16
2108 2250 7.622479 ACCTTCATAGTGGGTAGTAACATAAGT 59.378 37.037 0.00 0.00 0.00 2.24
2109 2251 8.019656 ACCTTCATAGTGGGTAGTAACATAAG 57.980 38.462 0.00 0.00 0.00 1.73
2110 2252 7.983166 ACCTTCATAGTGGGTAGTAACATAA 57.017 36.000 0.00 0.00 0.00 1.90
2111 2253 8.701908 CTACCTTCATAGTGGGTAGTAACATA 57.298 38.462 9.46 0.00 44.30 2.29
2112 2254 7.598759 CTACCTTCATAGTGGGTAGTAACAT 57.401 40.000 9.46 0.00 44.30 2.71
2119 2261 8.284435 ACTATGTTACTACCTTCATAGTGGGTA 58.716 37.037 13.45 0.00 45.91 3.69
2120 2262 7.130775 ACTATGTTACTACCTTCATAGTGGGT 58.869 38.462 13.45 0.00 45.91 4.51
2121 2263 7.506261 AGACTATGTTACTACCTTCATAGTGGG 59.494 40.741 17.43 0.00 46.89 4.61
2122 2264 8.466617 AGACTATGTTACTACCTTCATAGTGG 57.533 38.462 17.43 0.00 46.89 4.00
2125 2267 9.233649 CCCTAGACTATGTTACTACCTTCATAG 57.766 40.741 8.77 8.77 42.80 2.23
2126 2268 8.952602 TCCCTAGACTATGTTACTACCTTCATA 58.047 37.037 0.00 0.00 0.00 2.15
2127 2269 7.823635 TCCCTAGACTATGTTACTACCTTCAT 58.176 38.462 0.00 0.00 0.00 2.57
2128 2270 7.217028 TCCCTAGACTATGTTACTACCTTCA 57.783 40.000 0.00 0.00 0.00 3.02
2129 2271 9.978336 ATATCCCTAGACTATGTTACTACCTTC 57.022 37.037 0.00 0.00 0.00 3.46
2130 2272 9.756571 CATATCCCTAGACTATGTTACTACCTT 57.243 37.037 0.00 0.00 0.00 3.50
2131 2273 8.902881 ACATATCCCTAGACTATGTTACTACCT 58.097 37.037 0.00 0.00 33.42 3.08
2132 2274 8.958506 CACATATCCCTAGACTATGTTACTACC 58.041 40.741 8.30 0.00 34.66 3.18
2133 2275 9.517868 ACACATATCCCTAGACTATGTTACTAC 57.482 37.037 8.30 0.00 34.66 2.73
2138 2280 8.958060 ACATACACATATCCCTAGACTATGTT 57.042 34.615 8.30 5.15 34.66 2.71
2139 2281 8.958060 AACATACACATATCCCTAGACTATGT 57.042 34.615 0.00 0.00 36.72 2.29
2143 2285 9.742144 CTAGTAACATACACATATCCCTAGACT 57.258 37.037 0.00 0.00 0.00 3.24
2144 2286 9.517868 ACTAGTAACATACACATATCCCTAGAC 57.482 37.037 0.00 0.00 0.00 2.59
2145 2287 9.516546 CACTAGTAACATACACATATCCCTAGA 57.483 37.037 0.00 0.00 0.00 2.43
2146 2288 9.298250 ACACTAGTAACATACACATATCCCTAG 57.702 37.037 0.00 0.00 0.00 3.02
2148 2290 9.075678 GTACACTAGTAACATACACATATCCCT 57.924 37.037 0.00 0.00 30.67 4.20
2149 2291 9.075678 AGTACACTAGTAACATACACATATCCC 57.924 37.037 0.00 0.00 30.67 3.85
2154 2296 9.185680 TGATGAGTACACTAGTAACATACACAT 57.814 33.333 13.51 13.51 33.09 3.21
2155 2297 8.570068 TGATGAGTACACTAGTAACATACACA 57.430 34.615 0.00 2.20 33.09 3.72
2160 2302 7.981789 CCACAATGATGAGTACACTAGTAACAT 59.018 37.037 0.00 0.00 34.50 2.71
2161 2303 7.320399 CCACAATGATGAGTACACTAGTAACA 58.680 38.462 0.00 0.00 30.67 2.41
2162 2304 6.255887 GCCACAATGATGAGTACACTAGTAAC 59.744 42.308 0.00 0.00 30.67 2.50
2163 2305 6.154534 AGCCACAATGATGAGTACACTAGTAA 59.845 38.462 0.00 0.00 30.67 2.24
2164 2306 5.656859 AGCCACAATGATGAGTACACTAGTA 59.343 40.000 0.00 0.00 0.00 1.82
2165 2307 4.467795 AGCCACAATGATGAGTACACTAGT 59.532 41.667 0.00 0.00 0.00 2.57
2166 2308 5.016051 AGCCACAATGATGAGTACACTAG 57.984 43.478 0.00 0.00 0.00 2.57
2167 2309 5.656859 ACTAGCCACAATGATGAGTACACTA 59.343 40.000 0.00 0.00 0.00 2.74
2168 2310 3.988976 AGCCACAATGATGAGTACACT 57.011 42.857 0.00 0.00 0.00 3.55
2169 2311 4.759782 ACTAGCCACAATGATGAGTACAC 58.240 43.478 0.00 0.00 0.00 2.90
2170 2312 4.711846 AGACTAGCCACAATGATGAGTACA 59.288 41.667 0.00 0.00 0.00 2.90
2171 2313 5.269505 AGACTAGCCACAATGATGAGTAC 57.730 43.478 0.00 0.00 0.00 2.73
2172 2314 5.939764 AAGACTAGCCACAATGATGAGTA 57.060 39.130 0.00 0.00 0.00 2.59
2173 2315 4.833478 AAGACTAGCCACAATGATGAGT 57.167 40.909 0.00 0.00 0.00 3.41
2174 2316 7.215789 AGAATAAGACTAGCCACAATGATGAG 58.784 38.462 0.00 0.00 0.00 2.90
2175 2317 7.129457 AGAATAAGACTAGCCACAATGATGA 57.871 36.000 0.00 0.00 0.00 2.92
2176 2318 7.714377 AGAAGAATAAGACTAGCCACAATGATG 59.286 37.037 0.00 0.00 0.00 3.07
2177 2319 7.714377 CAGAAGAATAAGACTAGCCACAATGAT 59.286 37.037 0.00 0.00 0.00 2.45
2178 2320 7.044181 CAGAAGAATAAGACTAGCCACAATGA 58.956 38.462 0.00 0.00 0.00 2.57
2179 2321 6.238320 GCAGAAGAATAAGACTAGCCACAATG 60.238 42.308 0.00 0.00 0.00 2.82
2180 2322 5.819901 GCAGAAGAATAAGACTAGCCACAAT 59.180 40.000 0.00 0.00 0.00 2.71
2181 2323 5.178797 GCAGAAGAATAAGACTAGCCACAA 58.821 41.667 0.00 0.00 0.00 3.33
2182 2324 4.222810 TGCAGAAGAATAAGACTAGCCACA 59.777 41.667 0.00 0.00 0.00 4.17
2183 2325 4.759782 TGCAGAAGAATAAGACTAGCCAC 58.240 43.478 0.00 0.00 0.00 5.01
2184 2326 5.620738 ATGCAGAAGAATAAGACTAGCCA 57.379 39.130 0.00 0.00 0.00 4.75
2185 2327 6.317391 ACAAATGCAGAAGAATAAGACTAGCC 59.683 38.462 0.00 0.00 0.00 3.93
2186 2328 7.065085 TGACAAATGCAGAAGAATAAGACTAGC 59.935 37.037 0.00 0.00 0.00 3.42
2187 2329 8.484641 TGACAAATGCAGAAGAATAAGACTAG 57.515 34.615 0.00 0.00 0.00 2.57
2189 2331 7.934855 ATGACAAATGCAGAAGAATAAGACT 57.065 32.000 0.00 0.00 0.00 3.24
2193 2335 9.304731 GCAATTATGACAAATGCAGAAGAATAA 57.695 29.630 0.00 0.00 0.00 1.40
2194 2336 8.689061 AGCAATTATGACAAATGCAGAAGAATA 58.311 29.630 0.00 0.00 0.00 1.75
2303 2446 9.979578 GATGTCTTCTAGGGATATAGCATATTG 57.020 37.037 0.00 0.00 0.00 1.90
2941 4026 1.732259 GAGTTGAATGTAGCACCGTGG 59.268 52.381 0.00 0.00 0.00 4.94
2977 4062 1.599071 TCTCTGTTTTCTTGCACTGCG 59.401 47.619 0.00 0.00 0.00 5.18
3011 4096 5.066505 GTGTAATTTGATTACTGGGCTCTGG 59.933 44.000 10.98 0.00 44.17 3.86
3098 4183 0.396435 AACCCTGACACAGATCGCAA 59.604 50.000 0.00 0.00 32.44 4.85
3196 4284 5.643777 GGTTGCAGTACAATTCATACTCTGT 59.356 40.000 0.00 0.00 41.27 3.41
3197 4285 5.220472 CGGTTGCAGTACAATTCATACTCTG 60.220 44.000 0.00 0.00 41.27 3.35
3198 4286 4.870426 CGGTTGCAGTACAATTCATACTCT 59.130 41.667 0.00 0.00 41.27 3.24
3448 4536 1.931841 CCTGATGCATGTGAGAAGACG 59.068 52.381 2.46 0.00 0.00 4.18
3543 4638 6.712547 AGAAGCAGCAAGTTAAGACATTTACT 59.287 34.615 0.00 0.00 29.74 2.24
3544 4639 6.798959 CAGAAGCAGCAAGTTAAGACATTTAC 59.201 38.462 0.00 0.00 0.00 2.01
3545 4640 6.710295 TCAGAAGCAGCAAGTTAAGACATTTA 59.290 34.615 0.00 0.00 0.00 1.40
3554 4649 5.299028 TGAAATGTTCAGAAGCAGCAAGTTA 59.701 36.000 0.00 0.00 34.08 2.24
3626 4721 0.107508 ATGACTGTGAATCCGCTGGG 60.108 55.000 0.00 0.00 0.00 4.45
3803 4898 0.676151 GCCCTGCACCTCTTCTTCTG 60.676 60.000 0.00 0.00 0.00 3.02
3812 4907 2.729479 CGAGATCAGCCCTGCACCT 61.729 63.158 0.00 0.00 0.00 4.00
3815 4910 1.219124 GAACGAGATCAGCCCTGCA 59.781 57.895 0.00 0.00 0.00 4.41
3831 4926 2.543777 AGCAAAACCAGTAGCGAGAA 57.456 45.000 0.00 0.00 0.00 2.87
3912 5007 5.453903 CCTGTCATGTAGAGGGTTTCCATAG 60.454 48.000 0.00 0.00 34.89 2.23
3920 5015 3.052566 TCTCATCCTGTCATGTAGAGGGT 60.053 47.826 8.00 0.00 39.21 4.34
3921 5016 3.570540 TCTCATCCTGTCATGTAGAGGG 58.429 50.000 8.00 0.00 39.21 4.30
3935 5033 3.013219 GAGAAAGGTTTGCCTCTCATCC 58.987 50.000 0.00 0.00 46.33 3.51
3941 5039 2.171341 AGTCGAGAAAGGTTTGCCTC 57.829 50.000 0.00 0.00 46.33 4.70
3943 5041 3.374367 GGATAAGTCGAGAAAGGTTTGCC 59.626 47.826 0.00 0.00 0.00 4.52
3944 5042 3.374367 GGGATAAGTCGAGAAAGGTTTGC 59.626 47.826 0.00 0.00 0.00 3.68
3949 5047 1.755380 ACCGGGATAAGTCGAGAAAGG 59.245 52.381 6.32 0.00 0.00 3.11
3950 5048 2.481449 CCACCGGGATAAGTCGAGAAAG 60.481 54.545 6.32 0.00 35.59 2.62
3953 5051 1.389609 GCCACCGGGATAAGTCGAGA 61.390 60.000 6.32 0.00 35.59 4.04
3963 5061 2.796193 CGATGATCAGCCACCGGGA 61.796 63.158 6.32 0.00 35.59 5.14
3966 5064 1.067060 TCTAACGATGATCAGCCACCG 59.933 52.381 5.18 4.29 0.00 4.94
3967 5065 2.866762 GTTCTAACGATGATCAGCCACC 59.133 50.000 5.18 0.00 0.00 4.61
3969 5067 3.447229 TGAGTTCTAACGATGATCAGCCA 59.553 43.478 5.18 0.00 0.00 4.75
3978 5076 4.767928 AGGACAGACTTGAGTTCTAACGAT 59.232 41.667 0.00 0.00 0.00 3.73
3981 5079 5.455056 TGAGGACAGACTTGAGTTCTAAC 57.545 43.478 0.00 0.00 0.00 2.34
3983 5081 3.508012 GCTGAGGACAGACTTGAGTTCTA 59.492 47.826 0.00 0.00 46.03 2.10
3985 5083 2.298729 AGCTGAGGACAGACTTGAGTTC 59.701 50.000 0.00 0.00 46.03 3.01
3986 5084 2.036992 CAGCTGAGGACAGACTTGAGTT 59.963 50.000 8.42 0.00 46.03 3.01
3989 5087 1.709578 ACAGCTGAGGACAGACTTGA 58.290 50.000 23.35 0.00 46.03 3.02
3990 5088 2.540265 AACAGCTGAGGACAGACTTG 57.460 50.000 23.35 0.00 46.03 3.16
3991 5089 3.235200 ACTAACAGCTGAGGACAGACTT 58.765 45.455 23.35 2.95 46.03 3.01
3992 5090 2.823154 GACTAACAGCTGAGGACAGACT 59.177 50.000 23.35 0.00 46.03 3.24
3993 5091 2.558795 TGACTAACAGCTGAGGACAGAC 59.441 50.000 23.35 9.90 46.03 3.51
3994 5092 2.876581 TGACTAACAGCTGAGGACAGA 58.123 47.619 23.35 0.00 46.03 3.41
3995 5093 3.883830 ATGACTAACAGCTGAGGACAG 57.116 47.619 23.35 11.42 45.91 3.51
3996 5094 3.324846 ACAATGACTAACAGCTGAGGACA 59.675 43.478 23.35 15.29 0.00 4.02
3997 5095 3.931578 ACAATGACTAACAGCTGAGGAC 58.068 45.455 23.35 10.29 0.00 3.85
3998 5096 4.623932 AACAATGACTAACAGCTGAGGA 57.376 40.909 23.35 3.63 0.00 3.71
4053 5151 6.545666 TCACACTTCTTTGGAAATGCTTCTAA 59.454 34.615 0.00 0.00 32.64 2.10
4171 5301 3.068307 CACGAGGGCAATAGCTAAGTACT 59.932 47.826 0.00 0.00 41.70 2.73
4172 5302 3.181478 ACACGAGGGCAATAGCTAAGTAC 60.181 47.826 0.00 0.00 41.70 2.73
4288 5422 6.291427 GCACACATTATCATGAATTTTGAGCG 60.291 38.462 0.00 0.00 34.11 5.03
4317 5451 8.152898 GGAACTAAAGAGAGGTAAACACCTAAA 58.847 37.037 0.00 0.00 40.86 1.85
4322 5456 5.012871 AGGGGAACTAAAGAGAGGTAAACAC 59.987 44.000 0.00 0.00 0.00 3.32
4323 5457 5.012768 CAGGGGAACTAAAGAGAGGTAAACA 59.987 44.000 0.00 0.00 0.00 2.83
4324 5458 5.012871 ACAGGGGAACTAAAGAGAGGTAAAC 59.987 44.000 0.00 0.00 0.00 2.01
4327 5461 4.415224 ACAGGGGAACTAAAGAGAGGTA 57.585 45.455 0.00 0.00 0.00 3.08
4328 5462 3.277416 ACAGGGGAACTAAAGAGAGGT 57.723 47.619 0.00 0.00 0.00 3.85
4338 5472 3.897505 CCTTTTCATCAAACAGGGGAACT 59.102 43.478 0.00 0.00 0.00 3.01
4341 5475 3.893753 TCCTTTTCATCAAACAGGGGA 57.106 42.857 0.00 0.00 0.00 4.81
4378 5513 5.239306 TGTTACAGTTGGCAAAATGAGAGAG 59.761 40.000 8.55 0.00 34.98 3.20
4414 5549 4.261447 GGCTGAACAAACGAATTACAGGTT 60.261 41.667 0.00 0.00 0.00 3.50
4426 5561 3.798337 CACAGAAATGTGGCTGAACAAAC 59.202 43.478 0.00 0.00 36.24 2.93
4439 5574 5.416952 AGGCCTGTCTAATTTCACAGAAATG 59.583 40.000 3.11 3.37 42.37 2.32
4463 5598 7.275560 CACAGTCAAACATTGTAGTCGATGATA 59.724 37.037 0.00 0.00 38.46 2.15
4473 5608 4.385825 GGACCTCACAGTCAAACATTGTA 58.614 43.478 0.00 0.00 38.59 2.41
4487 5622 1.539065 CGACTGCATATGGGACCTCAC 60.539 57.143 4.56 0.00 0.00 3.51
4520 5655 9.916397 CAGTCTTTGATTTCATAATAACGGTAC 57.084 33.333 0.00 0.00 0.00 3.34
4522 5657 7.120579 TGCAGTCTTTGATTTCATAATAACGGT 59.879 33.333 0.00 0.00 0.00 4.83
4523 5658 7.471721 TGCAGTCTTTGATTTCATAATAACGG 58.528 34.615 0.00 0.00 0.00 4.44
4524 5659 8.788813 GTTGCAGTCTTTGATTTCATAATAACG 58.211 33.333 0.00 0.00 0.00 3.18
4525 5660 9.846248 AGTTGCAGTCTTTGATTTCATAATAAC 57.154 29.630 0.00 0.00 0.00 1.89
4530 5665 9.230122 TCATAAGTTGCAGTCTTTGATTTCATA 57.770 29.630 10.60 0.00 0.00 2.15
4590 5784 6.183360 TGTCTACTTTGGTTTTCATGACAACC 60.183 38.462 29.21 29.21 42.61 3.77
4591 5785 6.791303 TGTCTACTTTGGTTTTCATGACAAC 58.209 36.000 15.03 15.03 0.00 3.32
4594 5788 5.562890 GCCTGTCTACTTTGGTTTTCATGAC 60.563 44.000 0.00 0.00 0.00 3.06
4610 5805 6.658816 TCTTCTGCATAAATTTTGCCTGTCTA 59.341 34.615 17.13 3.38 39.39 2.59
4617 5812 7.171337 TGTTTTCCTCTTCTGCATAAATTTTGC 59.829 33.333 14.55 14.55 40.55 3.68
4628 5823 7.596621 CCTTTTCTATTTGTTTTCCTCTTCTGC 59.403 37.037 0.00 0.00 0.00 4.26
4629 5824 8.850156 TCCTTTTCTATTTGTTTTCCTCTTCTG 58.150 33.333 0.00 0.00 0.00 3.02
4630 5825 8.996651 TCCTTTTCTATTTGTTTTCCTCTTCT 57.003 30.769 0.00 0.00 0.00 2.85
4644 5839 7.074653 TGACCACACTAGTTCCTTTTCTATT 57.925 36.000 0.00 0.00 0.00 1.73
4649 5844 5.367945 TCTTGACCACACTAGTTCCTTTT 57.632 39.130 0.00 0.00 0.00 2.27
4650 5845 5.367945 TTCTTGACCACACTAGTTCCTTT 57.632 39.130 0.00 0.00 0.00 3.11
4651 5846 4.202367 CCTTCTTGACCACACTAGTTCCTT 60.202 45.833 0.00 0.00 0.00 3.36
4653 5848 3.665190 CCTTCTTGACCACACTAGTTCC 58.335 50.000 0.00 0.00 0.00 3.62
4655 5850 2.438021 TGCCTTCTTGACCACACTAGTT 59.562 45.455 0.00 0.00 0.00 2.24
4656 5851 2.047061 TGCCTTCTTGACCACACTAGT 58.953 47.619 0.00 0.00 0.00 2.57
4657 5852 2.839486 TGCCTTCTTGACCACACTAG 57.161 50.000 0.00 0.00 0.00 2.57
4658 5853 5.189736 AGAATATGCCTTCTTGACCACACTA 59.810 40.000 0.00 0.00 31.38 2.74
4659 5854 4.018960 AGAATATGCCTTCTTGACCACACT 60.019 41.667 0.00 0.00 31.38 3.55
4662 5857 5.294552 GTGTAGAATATGCCTTCTTGACCAC 59.705 44.000 0.00 0.00 36.82 4.16
4687 5957 1.576356 CTGTAGAATGCGCCTTCTCC 58.424 55.000 27.82 19.04 36.82 3.71
4702 5972 2.787473 CAAGGAACATGCTCCCTGTA 57.213 50.000 11.63 0.00 35.95 2.74
4711 5981 0.806868 AGATGCGTGCAAGGAACATG 59.193 50.000 0.00 0.00 0.00 3.21
4757 6029 1.872952 GCTCCCCATTTGTTTGTTTGC 59.127 47.619 0.00 0.00 0.00 3.68
4766 6038 4.958581 AGATTTTTCCTAGCTCCCCATTTG 59.041 41.667 0.00 0.00 0.00 2.32
4767 6039 5.043806 AGAGATTTTTCCTAGCTCCCCATTT 60.044 40.000 0.00 0.00 0.00 2.32
4768 6040 4.480166 AGAGATTTTTCCTAGCTCCCCATT 59.520 41.667 0.00 0.00 0.00 3.16
4769 6041 4.050757 AGAGATTTTTCCTAGCTCCCCAT 58.949 43.478 0.00 0.00 0.00 4.00
4770 6042 3.200825 CAGAGATTTTTCCTAGCTCCCCA 59.799 47.826 0.00 0.00 0.00 4.96
4772 6044 4.762289 TCAGAGATTTTTCCTAGCTCCC 57.238 45.455 0.00 0.00 0.00 4.30
4774 6046 5.983540 TCCTTCAGAGATTTTTCCTAGCTC 58.016 41.667 0.00 0.00 0.00 4.09
4775 6047 6.380079 TTCCTTCAGAGATTTTTCCTAGCT 57.620 37.500 0.00 0.00 0.00 3.32
4802 6075 3.026694 GGATAGGCCAGCAGATGTTTTT 58.973 45.455 5.01 0.00 36.34 1.94
4805 6078 0.475906 GGGATAGGCCAGCAGATGTT 59.524 55.000 5.01 0.00 38.95 2.71
4806 6079 1.422161 GGGGATAGGCCAGCAGATGT 61.422 60.000 5.01 0.00 38.95 3.06
4807 6080 1.132554 AGGGGATAGGCCAGCAGATG 61.133 60.000 5.01 0.00 38.95 2.90
4911 6187 0.752009 CACGGGAGAGGAATCGAGGA 60.752 60.000 0.00 0.00 0.00 3.71
4913 6189 0.752009 TCCACGGGAGAGGAATCGAG 60.752 60.000 0.00 0.00 46.79 4.04
4914 6190 1.305287 TCCACGGGAGAGGAATCGA 59.695 57.895 0.00 0.00 46.79 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.