Multiple sequence alignment - TraesCS5B01G270500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G270500 chr5B 100.000 2651 0 0 1 2651 455824592 455827242 0.000000e+00 4896.0
1 TraesCS5B01G270500 chr5B 87.013 77 5 2 182 254 314297382 314297457 6.080000e-12 82.4
2 TraesCS5B01G270500 chr5B 92.157 51 4 0 131 181 314297371 314297421 3.660000e-09 73.1
3 TraesCS5B01G270500 chr5B 95.556 45 1 1 355 398 455894727 455894771 1.320000e-08 71.3
4 TraesCS5B01G270500 chr5A 88.311 1480 98 22 544 1996 480502730 480504161 0.000000e+00 1705.0
5 TraesCS5B01G270500 chr5A 84.603 630 73 17 2038 2651 480504990 480505611 2.920000e-169 604.0
6 TraesCS5B01G270500 chr5A 86.538 208 12 10 331 528 480502546 480502747 5.750000e-52 215.0
7 TraesCS5B01G270500 chr5D 93.195 1058 68 2 641 1694 380013061 380014118 0.000000e+00 1552.0
8 TraesCS5B01G270500 chr5D 82.353 357 45 8 1001 1357 379965394 379965732 7.180000e-76 294.0
9 TraesCS5B01G270500 chr5D 79.630 432 55 19 1851 2253 380014542 380014969 2.010000e-71 279.0
10 TraesCS5B01G270500 chr5D 84.492 187 16 5 1613 1799 380014119 380014292 3.510000e-39 172.0
11 TraesCS5B01G270500 chr5D 76.779 267 41 9 2394 2651 380016514 380016768 2.140000e-26 130.0
12 TraesCS5B01G270500 chr5D 97.222 72 2 0 544 615 380012754 380012825 3.580000e-24 122.0
13 TraesCS5B01G270500 chr5D 89.333 75 3 3 183 253 369429896 369429823 3.630000e-14 89.8
14 TraesCS5B01G270500 chr3B 95.037 403 20 0 1048 1450 39345338 39344936 3.720000e-178 634.0
15 TraesCS5B01G270500 chr3B 92.754 207 15 0 1048 1254 770088011 770087805 1.540000e-77 300.0
16 TraesCS5B01G270500 chr3B 92.806 139 9 1 1 139 761682216 761682353 1.610000e-47 200.0
17 TraesCS5B01G270500 chr3B 92.157 51 4 0 131 181 741566381 741566431 3.660000e-09 73.1
18 TraesCS5B01G270500 chr6B 95.226 398 19 0 1048 1445 656201911 656202308 4.820000e-177 630.0
19 TraesCS5B01G270500 chr6B 94.737 133 7 0 1 133 27826185 27826053 9.620000e-50 207.0
20 TraesCS5B01G270500 chr6B 94.776 134 5 1 1 134 94613914 94614045 9.620000e-50 207.0
21 TraesCS5B01G270500 chr4A 94.853 136 6 1 1 136 656043947 656044081 7.430000e-51 211.0
22 TraesCS5B01G270500 chr4A 91.156 147 11 2 1 147 702098248 702098104 5.790000e-47 198.0
23 TraesCS5B01G270500 chr4A 82.955 88 8 5 184 266 250355442 250355527 3.660000e-09 73.1
24 TraesCS5B01G270500 chr1B 93.525 139 9 0 1 139 618278076 618278214 9.620000e-50 207.0
25 TraesCS5B01G270500 chr1B 96.330 109 4 0 1146 1254 642191939 642192047 2.100000e-41 180.0
26 TraesCS5B01G270500 chr7B 93.478 138 9 0 1 138 635295636 635295773 3.460000e-49 206.0
27 TraesCS5B01G270500 chr7B 93.478 138 8 1 1 137 700963068 700962931 1.240000e-48 204.0
28 TraesCS5B01G270500 chr4B 94.030 134 8 0 1 134 639795254 639795121 1.240000e-48 204.0
29 TraesCS5B01G270500 chr7A 88.158 76 5 3 182 254 532735498 532735424 1.310000e-13 87.9
30 TraesCS5B01G270500 chr7A 92.727 55 2 2 134 188 532735506 532735454 7.870000e-11 78.7
31 TraesCS5B01G270500 chr7A 92.157 51 4 0 131 181 699736048 699736098 3.660000e-09 73.1
32 TraesCS5B01G270500 chr3D 85.227 88 8 3 182 265 9421634 9421720 4.700000e-13 86.1
33 TraesCS5B01G270500 chr3D 92.157 51 4 0 131 181 698641 698691 3.660000e-09 73.1
34 TraesCS5B01G270500 chr1D 87.013 77 5 3 182 254 64885966 64886041 6.080000e-12 82.4
35 TraesCS5B01G270500 chr1D 93.750 48 3 0 134 181 64885958 64886005 3.660000e-09 73.1
36 TraesCS5B01G270500 chr4D 85.897 78 6 2 182 255 9306288 9306364 7.870000e-11 78.7
37 TraesCS5B01G270500 chr4D 92.157 51 4 0 131 181 9306277 9306327 3.660000e-09 73.1
38 TraesCS5B01G270500 chr6D 93.750 48 3 0 134 181 348087694 348087647 3.660000e-09 73.1
39 TraesCS5B01G270500 chr3A 82.759 87 10 4 184 266 22206698 22206783 3.660000e-09 73.1
40 TraesCS5B01G270500 chr3A 82.759 87 10 4 184 266 22219634 22219719 3.660000e-09 73.1
41 TraesCS5B01G270500 chr1A 92.157 51 4 0 131 181 568073824 568073874 3.660000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G270500 chr5B 455824592 455827242 2650 False 4896.000000 4896 100.0000 1 2651 1 chr5B.!!$F1 2650
1 TraesCS5B01G270500 chr5A 480502546 480505611 3065 False 841.333333 1705 86.4840 331 2651 3 chr5A.!!$F1 2320
2 TraesCS5B01G270500 chr5D 380012754 380016768 4014 False 451.000000 1552 86.2636 544 2651 5 chr5D.!!$F2 2107

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.107312 ATGCATGCTTCCGAGAGCTT 60.107 50.0 20.33 2.82 43.11 3.74 F
326 327 0.260230 TCCGAGAGCTTCTCATCCCT 59.740 55.0 11.93 0.00 43.55 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1722 0.395173 TGATCCGATCCACCGTCTGA 60.395 55.0 5.91 0.0 0.0 3.27 R
1749 2075 0.534203 ACGCAACAAACTGGACCGAT 60.534 50.0 0.00 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.389962 ACTTTAGCGCCGGTTCATAA 57.610 45.000 2.29 0.00 0.00 1.90
20 21 2.004733 ACTTTAGCGCCGGTTCATAAC 58.995 47.619 2.29 0.00 0.00 1.89
21 22 1.000884 TTTAGCGCCGGTTCATAACG 58.999 50.000 2.29 0.00 0.00 3.18
22 23 0.173029 TTAGCGCCGGTTCATAACGA 59.827 50.000 2.29 0.00 0.00 3.85
23 24 0.173029 TAGCGCCGGTTCATAACGAA 59.827 50.000 2.29 0.00 0.00 3.85
36 37 4.997565 TCATAACGAACCGGTACTAAAGG 58.002 43.478 8.00 0.00 29.74 3.11
37 38 2.749280 AACGAACCGGTACTAAAGGG 57.251 50.000 8.00 0.00 0.00 3.95
38 39 0.897621 ACGAACCGGTACTAAAGGGG 59.102 55.000 8.00 0.00 0.00 4.79
39 40 0.176449 CGAACCGGTACTAAAGGGGG 59.824 60.000 8.00 0.00 0.00 5.40
53 54 3.332395 GGGGGAGGGCCTTTAGTC 58.668 66.667 7.89 0.00 0.00 2.59
54 55 2.384433 GGGGGAGGGCCTTTAGTCC 61.384 68.421 7.89 3.34 0.00 3.85
55 56 3.332395 GGGAGGGCCTTTAGTCCC 58.668 66.667 7.89 10.19 42.07 4.46
56 57 2.384433 GGGAGGGCCTTTAGTCCCC 61.384 68.421 15.39 12.67 42.72 4.81
57 58 1.618447 GGAGGGCCTTTAGTCCCCA 60.618 63.158 7.89 0.00 43.67 4.96
58 59 1.608154 GAGGGCCTTTAGTCCCCAC 59.392 63.158 7.89 0.00 43.67 4.61
59 60 0.914902 GAGGGCCTTTAGTCCCCACT 60.915 60.000 7.89 0.00 43.67 4.00
60 61 0.914902 AGGGCCTTTAGTCCCCACTC 60.915 60.000 0.00 0.00 43.67 3.51
61 62 0.914902 GGGCCTTTAGTCCCCACTCT 60.915 60.000 0.84 0.00 38.70 3.24
62 63 0.992695 GGCCTTTAGTCCCCACTCTT 59.007 55.000 0.00 0.00 33.62 2.85
63 64 1.354705 GGCCTTTAGTCCCCACTCTTT 59.645 52.381 0.00 0.00 33.62 2.52
64 65 2.437413 GCCTTTAGTCCCCACTCTTTG 58.563 52.381 0.00 0.00 33.62 2.77
65 66 2.880167 GCCTTTAGTCCCCACTCTTTGG 60.880 54.545 0.00 0.00 46.47 3.28
66 67 2.375509 CCTTTAGTCCCCACTCTTTGGT 59.624 50.000 0.00 0.00 45.25 3.67
67 68 3.412386 CTTTAGTCCCCACTCTTTGGTG 58.588 50.000 0.00 0.00 45.25 4.17
68 69 0.690762 TAGTCCCCACTCTTTGGTGC 59.309 55.000 0.00 0.00 45.25 5.01
69 70 1.603739 GTCCCCACTCTTTGGTGCC 60.604 63.158 0.00 0.00 45.25 5.01
70 71 2.672996 CCCCACTCTTTGGTGCCG 60.673 66.667 0.00 0.00 45.25 5.69
71 72 2.672996 CCCACTCTTTGGTGCCGG 60.673 66.667 0.00 0.00 45.25 6.13
72 73 2.113139 CCACTCTTTGGTGCCGGT 59.887 61.111 1.90 0.00 41.10 5.28
73 74 1.528309 CCACTCTTTGGTGCCGGTT 60.528 57.895 1.90 0.00 41.10 4.44
74 75 1.654220 CACTCTTTGGTGCCGGTTG 59.346 57.895 1.90 0.00 0.00 3.77
75 76 1.528309 ACTCTTTGGTGCCGGTTGG 60.528 57.895 1.90 0.00 38.77 3.77
93 94 1.990799 GGCAAACCGGCATTAAAGAC 58.009 50.000 0.00 0.00 40.76 3.01
94 95 1.403647 GGCAAACCGGCATTAAAGACC 60.404 52.381 0.00 0.00 40.76 3.85
95 96 1.731098 GCAAACCGGCATTAAAGACCG 60.731 52.381 0.00 7.09 46.50 4.79
96 97 1.538075 CAAACCGGCATTAAAGACCGT 59.462 47.619 0.00 0.00 45.49 4.83
97 98 1.900245 AACCGGCATTAAAGACCGTT 58.100 45.000 0.00 0.00 45.49 4.44
98 99 2.766345 ACCGGCATTAAAGACCGTTA 57.234 45.000 0.00 0.00 45.49 3.18
99 100 2.349590 ACCGGCATTAAAGACCGTTAC 58.650 47.619 0.00 0.00 45.49 2.50
100 101 1.325338 CCGGCATTAAAGACCGTTACG 59.675 52.381 11.69 0.00 45.49 3.18
101 102 2.261345 CGGCATTAAAGACCGTTACGA 58.739 47.619 6.24 0.00 42.01 3.43
102 103 2.667481 CGGCATTAAAGACCGTTACGAA 59.333 45.455 6.24 0.00 42.01 3.85
103 104 3.482436 CGGCATTAAAGACCGTTACGAAC 60.482 47.826 6.24 0.00 42.01 3.95
104 105 3.181517 GGCATTAAAGACCGTTACGAACC 60.182 47.826 6.24 0.00 0.00 3.62
105 106 3.482436 GCATTAAAGACCGTTACGAACCG 60.482 47.826 6.24 0.00 0.00 4.44
110 111 2.048877 CCGTTACGAACCGGCACT 60.049 61.111 6.24 0.00 37.43 4.40
111 112 1.212490 CCGTTACGAACCGGCACTA 59.788 57.895 6.24 0.00 37.43 2.74
112 113 0.388391 CCGTTACGAACCGGCACTAA 60.388 55.000 6.24 0.00 37.43 2.24
113 114 1.417372 CGTTACGAACCGGCACTAAA 58.583 50.000 0.00 0.00 0.00 1.85
114 115 1.387756 CGTTACGAACCGGCACTAAAG 59.612 52.381 0.00 0.00 0.00 1.85
115 116 1.728425 GTTACGAACCGGCACTAAAGG 59.272 52.381 0.00 0.00 0.00 3.11
116 117 0.390209 TACGAACCGGCACTAAAGGC 60.390 55.000 0.00 0.00 0.00 4.35
122 123 3.587095 GGCACTAAAGGCCGGTTC 58.413 61.111 1.90 0.00 42.39 3.62
123 124 1.002502 GGCACTAAAGGCCGGTTCT 60.003 57.895 1.90 0.00 42.39 3.01
124 125 1.305930 GGCACTAAAGGCCGGTTCTG 61.306 60.000 1.90 0.00 42.39 3.02
125 126 1.923227 GCACTAAAGGCCGGTTCTGC 61.923 60.000 1.90 0.00 0.00 4.26
126 127 0.605319 CACTAAAGGCCGGTTCTGCA 60.605 55.000 1.90 0.00 0.00 4.41
127 128 0.605589 ACTAAAGGCCGGTTCTGCAC 60.606 55.000 1.90 0.00 0.00 4.57
128 129 0.321653 CTAAAGGCCGGTTCTGCACT 60.322 55.000 1.90 0.00 0.00 4.40
129 130 0.978151 TAAAGGCCGGTTCTGCACTA 59.022 50.000 1.90 0.00 0.00 2.74
130 131 0.321653 AAAGGCCGGTTCTGCACTAG 60.322 55.000 1.90 0.00 0.00 2.57
131 132 1.481056 AAGGCCGGTTCTGCACTAGT 61.481 55.000 1.90 0.00 0.00 2.57
132 133 1.741770 GGCCGGTTCTGCACTAGTG 60.742 63.158 18.93 18.93 0.00 2.74
133 134 1.004918 GCCGGTTCTGCACTAGTGT 60.005 57.895 23.44 0.00 0.00 3.55
134 135 0.245539 GCCGGTTCTGCACTAGTGTA 59.754 55.000 23.44 18.51 0.00 2.90
135 136 1.134788 GCCGGTTCTGCACTAGTGTAT 60.135 52.381 23.44 0.00 0.00 2.29
136 137 2.540515 CCGGTTCTGCACTAGTGTATG 58.459 52.381 23.44 13.67 0.00 2.39
137 138 2.094182 CCGGTTCTGCACTAGTGTATGT 60.094 50.000 23.44 0.00 0.00 2.29
138 139 3.585862 CGGTTCTGCACTAGTGTATGTT 58.414 45.455 23.44 0.00 0.00 2.71
139 140 4.381185 CCGGTTCTGCACTAGTGTATGTTA 60.381 45.833 23.44 3.42 0.00 2.41
140 141 5.165676 CGGTTCTGCACTAGTGTATGTTAA 58.834 41.667 23.44 8.92 0.00 2.01
141 142 5.810587 CGGTTCTGCACTAGTGTATGTTAAT 59.189 40.000 23.44 0.00 0.00 1.40
142 143 6.312918 CGGTTCTGCACTAGTGTATGTTAATT 59.687 38.462 23.44 0.00 0.00 1.40
143 144 7.148474 CGGTTCTGCACTAGTGTATGTTAATTT 60.148 37.037 23.44 0.00 0.00 1.82
144 145 9.158233 GGTTCTGCACTAGTGTATGTTAATTTA 57.842 33.333 23.44 0.00 0.00 1.40
279 280 7.829378 AAAAAGAGTATACGAGCCTACTTTG 57.171 36.000 0.00 0.00 0.00 2.77
280 281 6.527057 AAAGAGTATACGAGCCTACTTTGT 57.473 37.500 0.00 0.00 0.00 2.83
281 282 5.754543 AGAGTATACGAGCCTACTTTGTC 57.245 43.478 0.00 0.00 0.00 3.18
282 283 5.438833 AGAGTATACGAGCCTACTTTGTCT 58.561 41.667 0.00 0.00 0.00 3.41
283 284 5.887035 AGAGTATACGAGCCTACTTTGTCTT 59.113 40.000 0.00 0.00 0.00 3.01
284 285 5.892568 AGTATACGAGCCTACTTTGTCTTG 58.107 41.667 0.00 0.00 0.00 3.02
285 286 4.803098 ATACGAGCCTACTTTGTCTTGT 57.197 40.909 0.00 0.00 0.00 3.16
286 287 2.755650 ACGAGCCTACTTTGTCTTGTG 58.244 47.619 0.00 0.00 0.00 3.33
287 288 2.364324 ACGAGCCTACTTTGTCTTGTGA 59.636 45.455 0.00 0.00 0.00 3.58
288 289 3.181469 ACGAGCCTACTTTGTCTTGTGAA 60.181 43.478 0.00 0.00 0.00 3.18
289 290 3.807622 CGAGCCTACTTTGTCTTGTGAAA 59.192 43.478 0.00 0.00 0.00 2.69
290 291 4.452455 CGAGCCTACTTTGTCTTGTGAAAT 59.548 41.667 0.00 0.00 0.00 2.17
291 292 5.615544 CGAGCCTACTTTGTCTTGTGAAATG 60.616 44.000 0.00 0.00 0.00 2.32
292 293 4.520492 AGCCTACTTTGTCTTGTGAAATGG 59.480 41.667 0.00 0.00 0.00 3.16
293 294 4.798574 CCTACTTTGTCTTGTGAAATGGC 58.201 43.478 0.00 0.00 0.00 4.40
294 295 3.733443 ACTTTGTCTTGTGAAATGGCC 57.267 42.857 0.00 0.00 0.00 5.36
295 296 3.030291 ACTTTGTCTTGTGAAATGGCCA 58.970 40.909 8.56 8.56 0.00 5.36
296 297 3.642848 ACTTTGTCTTGTGAAATGGCCAT 59.357 39.130 14.09 14.09 0.00 4.40
297 298 3.940209 TTGTCTTGTGAAATGGCCATC 57.060 42.857 21.08 9.37 0.00 3.51
298 299 2.874014 TGTCTTGTGAAATGGCCATCA 58.126 42.857 21.08 12.43 0.00 3.07
299 300 3.433343 TGTCTTGTGAAATGGCCATCAT 58.567 40.909 21.08 11.56 37.79 2.45
300 301 3.193903 TGTCTTGTGAAATGGCCATCATG 59.806 43.478 21.08 14.33 35.99 3.07
301 302 2.166870 TCTTGTGAAATGGCCATCATGC 59.833 45.455 21.08 10.78 35.99 4.06
302 303 1.558233 TGTGAAATGGCCATCATGCA 58.442 45.000 21.08 13.33 35.99 3.96
303 304 2.112190 TGTGAAATGGCCATCATGCAT 58.888 42.857 21.08 0.00 35.99 3.96
304 305 2.159028 TGTGAAATGGCCATCATGCATG 60.159 45.455 21.08 21.07 35.99 4.06
305 306 1.202592 TGAAATGGCCATCATGCATGC 60.203 47.619 21.08 11.82 35.99 4.06
306 307 1.070134 GAAATGGCCATCATGCATGCT 59.930 47.619 21.08 9.87 35.99 3.79
307 308 1.128200 AATGGCCATCATGCATGCTT 58.872 45.000 21.08 10.16 35.99 3.91
308 309 0.679505 ATGGCCATCATGCATGCTTC 59.320 50.000 22.25 10.15 34.22 3.86
309 310 1.366366 GGCCATCATGCATGCTTCC 59.634 57.895 22.25 15.01 0.00 3.46
310 311 1.007734 GCCATCATGCATGCTTCCG 60.008 57.895 22.25 8.07 0.00 4.30
311 312 1.449726 GCCATCATGCATGCTTCCGA 61.450 55.000 22.25 10.08 0.00 4.55
312 313 0.591659 CCATCATGCATGCTTCCGAG 59.408 55.000 22.25 4.53 0.00 4.63
313 314 1.589803 CATCATGCATGCTTCCGAGA 58.410 50.000 22.25 6.52 0.00 4.04
314 315 1.531578 CATCATGCATGCTTCCGAGAG 59.468 52.381 22.25 0.00 0.00 3.20
315 316 0.812811 TCATGCATGCTTCCGAGAGC 60.813 55.000 22.25 3.40 43.00 4.09
316 317 0.814410 CATGCATGCTTCCGAGAGCT 60.814 55.000 20.33 0.00 43.11 4.09
317 318 0.107312 ATGCATGCTTCCGAGAGCTT 60.107 50.000 20.33 2.82 43.11 3.74
318 319 0.742281 TGCATGCTTCCGAGAGCTTC 60.742 55.000 20.33 0.00 43.11 3.86
319 320 0.461693 GCATGCTTCCGAGAGCTTCT 60.462 55.000 11.37 0.00 43.11 2.85
320 321 1.569708 CATGCTTCCGAGAGCTTCTC 58.430 55.000 10.59 0.00 43.11 2.87
321 322 1.134877 CATGCTTCCGAGAGCTTCTCA 60.135 52.381 10.59 0.00 43.55 3.27
322 323 1.189752 TGCTTCCGAGAGCTTCTCAT 58.810 50.000 10.59 0.00 43.55 2.90
323 324 1.135915 TGCTTCCGAGAGCTTCTCATC 59.864 52.381 10.59 0.00 43.55 2.92
324 325 1.537990 GCTTCCGAGAGCTTCTCATCC 60.538 57.143 11.93 0.00 43.55 3.51
325 326 1.068434 CTTCCGAGAGCTTCTCATCCC 59.932 57.143 11.93 0.00 43.55 3.85
326 327 0.260230 TCCGAGAGCTTCTCATCCCT 59.740 55.000 11.93 0.00 43.55 4.20
327 328 0.673437 CCGAGAGCTTCTCATCCCTC 59.327 60.000 11.93 0.53 43.55 4.30
328 329 0.673437 CGAGAGCTTCTCATCCCTCC 59.327 60.000 11.93 0.00 43.55 4.30
329 330 1.786937 GAGAGCTTCTCATCCCTCCA 58.213 55.000 7.93 0.00 42.90 3.86
332 333 1.836802 GAGCTTCTCATCCCTCCAGTT 59.163 52.381 0.00 0.00 0.00 3.16
335 336 2.191400 CTTCTCATCCCTCCAGTTCCA 58.809 52.381 0.00 0.00 0.00 3.53
352 353 1.081892 CCATCTGCTCAGACCGTTTG 58.918 55.000 1.15 0.00 40.75 2.93
353 354 1.609061 CCATCTGCTCAGACCGTTTGT 60.609 52.381 1.15 0.00 40.75 2.83
354 355 1.462283 CATCTGCTCAGACCGTTTGTG 59.538 52.381 1.15 0.00 40.75 3.33
355 356 0.464036 TCTGCTCAGACCGTTTGTGT 59.536 50.000 0.00 0.00 31.41 3.72
360 363 2.285083 CTCAGACCGTTTGTGTCCAAA 58.715 47.619 0.00 0.00 38.22 3.28
380 383 2.202878 TCGTAATCAGCTGCCGCC 60.203 61.111 9.47 0.00 36.60 6.13
445 448 2.416747 TGACATTGTCTGCTACTGCAC 58.583 47.619 17.26 0.00 45.31 4.57
454 457 4.222114 GTCTGCTACTGCACATTTTGTTC 58.778 43.478 0.00 0.00 45.31 3.18
455 458 4.023707 GTCTGCTACTGCACATTTTGTTCT 60.024 41.667 0.00 0.00 45.31 3.01
484 494 2.726989 GCTGTCACGTCTCGATCGTTAA 60.727 50.000 15.94 0.00 39.55 2.01
485 495 3.681855 CTGTCACGTCTCGATCGTTAAT 58.318 45.455 15.94 0.00 39.55 1.40
489 499 6.260377 TGTCACGTCTCGATCGTTAATTAAT 58.740 36.000 15.94 0.00 39.55 1.40
501 511 9.318041 CGATCGTTAATTAATTCATTAAGCTGG 57.682 33.333 7.03 0.00 35.88 4.85
503 513 7.422399 TCGTTAATTAATTCATTAAGCTGGCC 58.578 34.615 3.39 0.00 35.88 5.36
504 514 7.067615 TCGTTAATTAATTCATTAAGCTGGCCA 59.932 33.333 4.71 4.71 35.88 5.36
505 515 7.867403 CGTTAATTAATTCATTAAGCTGGCCAT 59.133 33.333 5.51 0.00 35.88 4.40
506 516 8.981647 GTTAATTAATTCATTAAGCTGGCCATG 58.018 33.333 5.51 0.00 35.88 3.66
507 517 3.464111 AATTCATTAAGCTGGCCATGC 57.536 42.857 5.51 12.80 0.00 4.06
508 518 1.849977 TTCATTAAGCTGGCCATGCA 58.150 45.000 23.46 8.50 0.00 3.96
509 519 2.076207 TCATTAAGCTGGCCATGCAT 57.924 45.000 23.46 16.62 0.00 3.96
510 520 1.684450 TCATTAAGCTGGCCATGCATG 59.316 47.619 20.19 20.19 0.00 4.06
511 521 0.391597 ATTAAGCTGGCCATGCATGC 59.608 50.000 21.69 11.82 0.00 4.06
512 522 0.971447 TTAAGCTGGCCATGCATGCA 60.971 50.000 25.04 25.04 32.59 3.96
513 523 0.757561 TAAGCTGGCCATGCATGCAT 60.758 50.000 27.46 27.46 37.08 3.96
528 538 4.316205 CATGCATGCACCATCTGTTATT 57.684 40.909 25.37 0.00 0.00 1.40
529 539 4.689071 CATGCATGCACCATCTGTTATTT 58.311 39.130 25.37 0.00 0.00 1.40
530 540 4.804868 TGCATGCACCATCTGTTATTTT 57.195 36.364 18.46 0.00 0.00 1.82
531 541 5.149973 TGCATGCACCATCTGTTATTTTT 57.850 34.783 18.46 0.00 0.00 1.94
555 565 3.354948 TTGAAGTAGCATGCACCATCT 57.645 42.857 21.98 7.33 0.00 2.90
621 635 3.228085 GAGCAGAACTACTCGCTCG 57.772 57.895 0.00 0.00 38.69 5.03
623 637 1.664659 GAGCAGAACTACTCGCTCGTA 59.335 52.381 0.00 0.00 38.69 3.43
624 638 2.082231 AGCAGAACTACTCGCTCGTAA 58.918 47.619 0.00 0.00 31.18 3.18
625 639 2.159544 AGCAGAACTACTCGCTCGTAAC 60.160 50.000 0.00 0.00 31.18 2.50
627 641 3.670091 GCAGAACTACTCGCTCGTAACTT 60.670 47.826 0.00 0.00 0.00 2.66
628 642 4.474113 CAGAACTACTCGCTCGTAACTTT 58.526 43.478 0.00 0.00 0.00 2.66
629 643 4.321217 CAGAACTACTCGCTCGTAACTTTG 59.679 45.833 0.00 0.00 0.00 2.77
630 644 4.214971 AGAACTACTCGCTCGTAACTTTGA 59.785 41.667 0.00 0.00 0.00 2.69
631 645 3.819537 ACTACTCGCTCGTAACTTTGAC 58.180 45.455 0.00 0.00 0.00 3.18
632 646 2.061740 ACTCGCTCGTAACTTTGACC 57.938 50.000 0.00 0.00 0.00 4.02
633 647 0.982673 CTCGCTCGTAACTTTGACCG 59.017 55.000 0.00 0.00 0.00 4.79
634 648 1.005294 TCGCTCGTAACTTTGACCGC 61.005 55.000 0.00 0.00 0.00 5.68
635 649 1.007336 CGCTCGTAACTTTGACCGCT 61.007 55.000 0.00 0.00 0.00 5.52
636 650 1.730121 CGCTCGTAACTTTGACCGCTA 60.730 52.381 0.00 0.00 0.00 4.26
638 652 1.918609 CTCGTAACTTTGACCGCTAGC 59.081 52.381 4.06 4.06 0.00 3.42
677 901 6.691508 AGCTGTTGTTTATCCATTTCCTTTC 58.308 36.000 0.00 0.00 0.00 2.62
782 1007 1.140852 AGTACTCCAGTGCAGTGCAAA 59.859 47.619 21.67 4.98 41.47 3.68
831 1056 4.142359 ACACTGACAGGATATGACGAACTC 60.142 45.833 7.51 0.00 0.00 3.01
977 1219 0.580578 ACGATCGATCACTACGACGG 59.419 55.000 24.34 7.78 42.37 4.79
1094 1339 2.126189 GGTGGTGGACGTAGACGC 60.126 66.667 1.14 0.00 44.43 5.19
1182 1427 3.818787 GGCGCGTCGGTCTTCCTA 61.819 66.667 8.43 0.00 0.00 2.94
1270 1515 1.874345 CGGGTGGCTCTACTTCGTGT 61.874 60.000 0.00 0.00 0.00 4.49
1477 1722 3.661131 CGGACGAGATCGCCGGAT 61.661 66.667 21.97 0.00 46.81 4.18
1512 1757 2.102420 GGATCATCACCATGTGTACGGA 59.898 50.000 0.00 0.00 34.79 4.69
1555 1800 1.153469 GCGAAGGCCAGGAAGAGAG 60.153 63.158 5.01 0.00 0.00 3.20
1556 1801 1.153469 CGAAGGCCAGGAAGAGAGC 60.153 63.158 5.01 0.00 0.00 4.09
1662 1907 1.001633 GACTTCTGAGCAACCCGGTAA 59.998 52.381 0.00 0.00 0.00 2.85
1672 1917 2.490115 GCAACCCGGTAATGATTCAACA 59.510 45.455 0.00 0.00 0.00 3.33
1676 1921 5.168647 ACCCGGTAATGATTCAACAGTTA 57.831 39.130 0.00 0.00 0.00 2.24
1711 2037 3.637769 TGGGAGTGGTTAGCAACTTTTT 58.362 40.909 0.00 0.00 0.00 1.94
1760 2086 5.160607 TGATTGAGTTAATCGGTCCAGTT 57.839 39.130 3.45 0.00 46.65 3.16
1766 2092 3.252458 AGTTAATCGGTCCAGTTTGTTGC 59.748 43.478 0.00 0.00 0.00 4.17
1779 2105 3.033764 GTTGCGTTGCTCGACCGA 61.034 61.111 6.11 0.00 42.86 4.69
1821 2321 7.411264 CGAGTTATATGTACAGCATGCTTGATC 60.411 40.741 19.98 9.55 42.53 2.92
1832 2332 1.372582 TGCTTGATCCTTCGATGTGC 58.627 50.000 0.00 0.00 0.00 4.57
1861 2361 9.103048 GTGTAAAATCTGTATTGTGAAAACTCG 57.897 33.333 0.00 0.00 0.00 4.18
1862 2362 9.047371 TGTAAAATCTGTATTGTGAAAACTCGA 57.953 29.630 0.00 0.00 0.00 4.04
1895 2419 4.060900 ACTGACACTGCATGAAAGTACTG 58.939 43.478 0.00 4.32 0.00 2.74
1896 2420 3.402110 TGACACTGCATGAAAGTACTGG 58.598 45.455 0.00 0.00 0.00 4.00
1897 2421 3.181455 TGACACTGCATGAAAGTACTGGT 60.181 43.478 0.00 0.00 0.00 4.00
1949 2473 1.739466 TCTGAATTCTGCATTGACGCC 59.261 47.619 7.05 0.00 0.00 5.68
1977 2501 0.608308 GCCCGCTCCAAGGTTAAACT 60.608 55.000 0.00 0.00 0.00 2.66
1989 2513 6.940298 TCCAAGGTTAAACTATCTTTGGTCTG 59.060 38.462 7.83 0.00 0.00 3.51
2017 2938 5.890334 TCAGATTTAATTGCCCGAACATTC 58.110 37.500 0.00 0.00 0.00 2.67
2059 3371 8.537049 TTCTTGCATTTAATGATTTTGTGAGG 57.463 30.769 9.36 0.00 0.00 3.86
2060 3372 7.669427 TCTTGCATTTAATGATTTTGTGAGGT 58.331 30.769 9.36 0.00 0.00 3.85
2104 3416 8.947055 AAATTGATACAAACTTGGATTATGGC 57.053 30.769 0.00 0.00 30.10 4.40
2137 3460 7.986320 TGGTTTGAATTTGAAATATAGGCCATG 59.014 33.333 5.01 0.00 0.00 3.66
2155 3491 6.500400 AGGCCATGGTAGAATATACATGTACA 59.500 38.462 14.67 0.00 37.20 2.90
2156 3492 6.594159 GGCCATGGTAGAATATACATGTACAC 59.406 42.308 14.67 0.38 37.20 2.90
2224 3560 3.264193 TGTAAATCACCTGATGCAGAGGT 59.736 43.478 13.37 13.37 45.23 3.85
2244 3580 2.164827 GTCGAGAGTCTTCCCCTCTTTC 59.835 54.545 0.00 0.00 39.36 2.62
2247 3583 3.111484 GAGAGTCTTCCCCTCTTTCCAT 58.889 50.000 0.00 0.00 39.36 3.41
2314 5028 4.566545 TGGAGTGCACACAAAATAACAG 57.433 40.909 21.04 0.00 0.00 3.16
2315 5029 3.317711 TGGAGTGCACACAAAATAACAGG 59.682 43.478 21.04 0.00 0.00 4.00
2318 5032 3.704061 AGTGCACACAAAATAACAGGGTT 59.296 39.130 21.04 0.00 0.00 4.11
2335 5049 3.770388 AGGGTTCCTAAGAGCAACTCTAC 59.230 47.826 0.00 0.00 40.28 2.59
2341 5055 6.374417 TCCTAAGAGCAACTCTACCAAATT 57.626 37.500 0.00 0.00 40.28 1.82
2347 5061 6.479884 AGAGCAACTCTACCAAATTCTCAAT 58.520 36.000 0.00 0.00 39.28 2.57
2351 5065 6.549952 CAACTCTACCAAATTCTCAATGCTC 58.450 40.000 0.00 0.00 0.00 4.26
2363 5077 3.569701 TCTCAATGCTCAACTCCCAAAAC 59.430 43.478 0.00 0.00 0.00 2.43
2373 5087 6.682861 GCTCAACTCCCAAAACACACTTATTT 60.683 38.462 0.00 0.00 0.00 1.40
2447 5194 6.722590 TCCCCTAAACTTAACTCCCATTTTTC 59.277 38.462 0.00 0.00 0.00 2.29
2448 5195 6.724441 CCCCTAAACTTAACTCCCATTTTTCT 59.276 38.462 0.00 0.00 0.00 2.52
2476 5223 7.339721 TCATTTACTAGTCCTCATCTCTTTCGT 59.660 37.037 0.00 0.00 0.00 3.85
2477 5224 4.974368 ACTAGTCCTCATCTCTTTCGTG 57.026 45.455 0.00 0.00 0.00 4.35
2481 5228 5.255710 AGTCCTCATCTCTTTCGTGTATG 57.744 43.478 0.00 0.00 0.00 2.39
2539 5294 3.633058 CGTTTGAAAAGCGCAAAGTTT 57.367 38.095 11.47 3.93 44.94 2.66
2552 5307 5.402270 AGCGCAAAGTTTAGCAACATTTTAG 59.598 36.000 11.47 0.00 35.05 1.85
2554 5309 6.074569 GCGCAAAGTTTAGCAACATTTTAGAA 60.075 34.615 0.30 0.00 35.05 2.10
2555 5310 7.359181 GCGCAAAGTTTAGCAACATTTTAGAAT 60.359 33.333 0.30 0.00 35.05 2.40
2556 5311 7.946237 CGCAAAGTTTAGCAACATTTTAGAATG 59.054 33.333 4.50 4.50 46.47 2.67
2557 5312 7.741652 GCAAAGTTTAGCAACATTTTAGAATGC 59.258 33.333 5.92 0.00 45.25 3.56
2558 5313 8.763356 CAAAGTTTAGCAACATTTTAGAATGCA 58.237 29.630 5.92 0.00 45.25 3.96
2559 5314 9.492973 AAAGTTTAGCAACATTTTAGAATGCAT 57.507 25.926 5.92 0.00 45.25 3.96
2592 5347 8.093927 TGAATTTTCACTTTCCAATGATAACCC 58.906 33.333 0.00 0.00 31.01 4.11
2617 5372 3.963665 TCACGCAAGAATTCAACCAAAG 58.036 40.909 8.44 0.00 43.62 2.77
2623 5378 5.505654 CGCAAGAATTCAACCAAAGTACACT 60.506 40.000 8.44 0.00 43.02 3.55
2632 5387 7.667043 TCAACCAAAGTACACTTCATATCAC 57.333 36.000 0.00 0.00 34.61 3.06
2639 5394 5.745227 AGTACACTTCATATCACCCCAAAG 58.255 41.667 0.00 0.00 0.00 2.77
2641 5396 5.456921 ACACTTCATATCACCCCAAAGAT 57.543 39.130 0.00 0.00 0.00 2.40
2647 5402 8.061304 ACTTCATATCACCCCAAAGATGTTATT 58.939 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.004733 GTTATGAACCGGCGCTAAAGT 58.995 47.619 7.64 0.00 0.00 2.66
1 2 1.005347 CGTTATGAACCGGCGCTAAAG 60.005 52.381 7.64 0.00 0.00 1.85
2 3 1.000884 CGTTATGAACCGGCGCTAAA 58.999 50.000 7.64 0.00 0.00 1.85
3 4 0.173029 TCGTTATGAACCGGCGCTAA 59.827 50.000 7.64 0.00 0.00 3.09
4 5 0.173029 TTCGTTATGAACCGGCGCTA 59.827 50.000 7.64 0.00 0.00 4.26
5 6 1.079681 TTCGTTATGAACCGGCGCT 60.080 52.632 7.64 0.00 0.00 5.92
6 7 3.477085 TTCGTTATGAACCGGCGC 58.523 55.556 0.00 0.00 0.00 6.53
13 14 5.410067 CCTTTAGTACCGGTTCGTTATGAA 58.590 41.667 15.04 0.00 0.00 2.57
14 15 4.142182 CCCTTTAGTACCGGTTCGTTATGA 60.142 45.833 15.04 0.00 0.00 2.15
15 16 4.114794 CCCTTTAGTACCGGTTCGTTATG 58.885 47.826 15.04 0.00 0.00 1.90
16 17 3.132824 CCCCTTTAGTACCGGTTCGTTAT 59.867 47.826 15.04 0.00 0.00 1.89
17 18 2.495669 CCCCTTTAGTACCGGTTCGTTA 59.504 50.000 15.04 0.00 0.00 3.18
18 19 1.276138 CCCCTTTAGTACCGGTTCGTT 59.724 52.381 15.04 0.00 0.00 3.85
19 20 0.897621 CCCCTTTAGTACCGGTTCGT 59.102 55.000 15.04 0.00 0.00 3.85
20 21 0.176449 CCCCCTTTAGTACCGGTTCG 59.824 60.000 15.04 0.00 0.00 3.95
36 37 2.384433 GGACTAAAGGCCCTCCCCC 61.384 68.421 0.00 0.00 0.00 5.40
37 38 2.384433 GGGACTAAAGGCCCTCCCC 61.384 68.421 14.19 0.00 41.31 4.81
38 39 2.384433 GGGGACTAAAGGCCCTCCC 61.384 68.421 20.56 7.76 44.10 4.30
39 40 1.618447 TGGGGACTAAAGGCCCTCC 60.618 63.158 20.56 5.55 44.10 4.30
40 41 0.914902 AGTGGGGACTAAAGGCCCTC 60.915 60.000 20.56 13.50 44.10 4.30
41 42 0.914902 GAGTGGGGACTAAAGGCCCT 60.915 60.000 20.56 0.25 44.10 5.19
42 43 0.914902 AGAGTGGGGACTAAAGGCCC 60.915 60.000 13.03 13.03 43.91 5.80
43 44 0.992695 AAGAGTGGGGACTAAAGGCC 59.007 55.000 0.00 0.00 0.00 5.19
44 45 2.437413 CAAAGAGTGGGGACTAAAGGC 58.563 52.381 0.00 0.00 0.00 4.35
45 46 3.073274 CCAAAGAGTGGGGACTAAAGG 57.927 52.381 0.00 0.00 44.64 3.11
56 57 1.654220 CAACCGGCACCAAAGAGTG 59.346 57.895 0.00 0.00 40.88 3.51
57 58 1.528309 CCAACCGGCACCAAAGAGT 60.528 57.895 0.00 0.00 0.00 3.24
58 59 3.354678 CCAACCGGCACCAAAGAG 58.645 61.111 0.00 0.00 0.00 2.85
71 72 2.065512 CTTTAATGCCGGTTTGCCAAC 58.934 47.619 1.90 0.00 34.09 3.77
72 73 1.964223 TCTTTAATGCCGGTTTGCCAA 59.036 42.857 1.90 0.00 34.09 4.52
73 74 1.271102 GTCTTTAATGCCGGTTTGCCA 59.729 47.619 1.90 0.00 34.09 4.92
74 75 1.403647 GGTCTTTAATGCCGGTTTGCC 60.404 52.381 1.90 0.00 0.00 4.52
75 76 1.731098 CGGTCTTTAATGCCGGTTTGC 60.731 52.381 1.90 0.00 41.60 3.68
76 77 2.030628 AACGGTCTTTAATGCCGGTTTG 60.031 45.455 20.14 0.00 43.94 2.93
77 78 2.232399 AACGGTCTTTAATGCCGGTTT 58.768 42.857 20.14 0.00 43.94 3.27
78 79 1.900245 AACGGTCTTTAATGCCGGTT 58.100 45.000 20.14 8.56 43.94 4.44
82 83 3.181517 GGTTCGTAACGGTCTTTAATGCC 60.182 47.826 0.00 0.00 0.00 4.40
83 84 3.482436 CGGTTCGTAACGGTCTTTAATGC 60.482 47.826 0.00 0.00 0.00 3.56
84 85 3.061161 CCGGTTCGTAACGGTCTTTAATG 59.939 47.826 10.75 0.00 44.85 1.90
85 86 3.253230 CCGGTTCGTAACGGTCTTTAAT 58.747 45.455 10.75 0.00 44.85 1.40
86 87 2.671596 CCGGTTCGTAACGGTCTTTAA 58.328 47.619 10.75 0.00 44.85 1.52
87 88 2.346099 CCGGTTCGTAACGGTCTTTA 57.654 50.000 10.75 0.00 44.85 1.85
88 89 3.199764 CCGGTTCGTAACGGTCTTT 57.800 52.632 10.75 0.00 44.85 2.52
89 90 4.972591 CCGGTTCGTAACGGTCTT 57.027 55.556 10.75 0.00 44.85 3.01
94 95 1.387756 CTTTAGTGCCGGTTCGTAACG 59.612 52.381 1.90 0.00 0.00 3.18
95 96 1.728425 CCTTTAGTGCCGGTTCGTAAC 59.272 52.381 1.90 0.00 0.00 2.50
96 97 1.940752 GCCTTTAGTGCCGGTTCGTAA 60.941 52.381 1.90 0.00 0.00 3.18
97 98 0.390209 GCCTTTAGTGCCGGTTCGTA 60.390 55.000 1.90 0.00 0.00 3.43
98 99 1.670083 GCCTTTAGTGCCGGTTCGT 60.670 57.895 1.90 0.00 0.00 3.85
99 100 2.396157 GGCCTTTAGTGCCGGTTCG 61.396 63.158 1.90 0.00 39.48 3.95
100 101 3.587095 GGCCTTTAGTGCCGGTTC 58.413 61.111 1.90 0.00 39.48 3.62
105 106 1.002502 AGAACCGGCCTTTAGTGCC 60.003 57.895 0.00 0.00 45.70 5.01
106 107 1.923227 GCAGAACCGGCCTTTAGTGC 61.923 60.000 0.00 0.20 0.00 4.40
107 108 0.605319 TGCAGAACCGGCCTTTAGTG 60.605 55.000 0.00 0.00 0.00 2.74
108 109 0.605589 GTGCAGAACCGGCCTTTAGT 60.606 55.000 0.00 0.00 0.00 2.24
109 110 0.321653 AGTGCAGAACCGGCCTTTAG 60.322 55.000 0.00 0.00 0.00 1.85
110 111 0.978151 TAGTGCAGAACCGGCCTTTA 59.022 50.000 0.00 0.00 0.00 1.85
111 112 0.321653 CTAGTGCAGAACCGGCCTTT 60.322 55.000 0.00 0.00 0.00 3.11
112 113 1.296715 CTAGTGCAGAACCGGCCTT 59.703 57.895 0.00 0.00 0.00 4.35
113 114 1.913762 ACTAGTGCAGAACCGGCCT 60.914 57.895 0.00 0.00 0.00 5.19
114 115 1.741770 CACTAGTGCAGAACCGGCC 60.742 63.158 10.54 0.00 0.00 6.13
115 116 0.245539 TACACTAGTGCAGAACCGGC 59.754 55.000 22.90 0.00 0.00 6.13
116 117 2.094182 ACATACACTAGTGCAGAACCGG 60.094 50.000 22.90 0.00 0.00 5.28
117 118 3.232213 ACATACACTAGTGCAGAACCG 57.768 47.619 22.90 7.07 0.00 4.44
118 119 7.611213 AATTAACATACACTAGTGCAGAACC 57.389 36.000 22.90 0.00 0.00 3.62
253 254 9.530633 CAAAGTAGGCTCGTATACTCTTTTTAT 57.469 33.333 0.56 0.00 31.03 1.40
254 255 8.526147 ACAAAGTAGGCTCGTATACTCTTTTTA 58.474 33.333 0.56 0.00 31.03 1.52
255 256 7.384477 ACAAAGTAGGCTCGTATACTCTTTTT 58.616 34.615 0.56 0.00 31.03 1.94
256 257 6.932947 ACAAAGTAGGCTCGTATACTCTTTT 58.067 36.000 0.56 0.00 31.03 2.27
257 258 6.377712 AGACAAAGTAGGCTCGTATACTCTTT 59.622 38.462 0.56 0.00 31.03 2.52
258 259 5.887035 AGACAAAGTAGGCTCGTATACTCTT 59.113 40.000 0.56 0.00 31.03 2.85
259 260 5.438833 AGACAAAGTAGGCTCGTATACTCT 58.561 41.667 0.56 0.00 31.03 3.24
260 261 5.754543 AGACAAAGTAGGCTCGTATACTC 57.245 43.478 0.56 0.00 31.03 2.59
261 262 5.418209 ACAAGACAAAGTAGGCTCGTATACT 59.582 40.000 0.56 0.00 33.67 2.12
262 263 5.515626 CACAAGACAAAGTAGGCTCGTATAC 59.484 44.000 0.00 0.00 0.00 1.47
263 264 5.416639 TCACAAGACAAAGTAGGCTCGTATA 59.583 40.000 0.00 0.00 0.00 1.47
264 265 4.219944 TCACAAGACAAAGTAGGCTCGTAT 59.780 41.667 0.00 0.00 0.00 3.06
265 266 3.570975 TCACAAGACAAAGTAGGCTCGTA 59.429 43.478 0.00 0.00 0.00 3.43
266 267 2.364324 TCACAAGACAAAGTAGGCTCGT 59.636 45.455 0.00 0.00 0.00 4.18
267 268 3.026630 TCACAAGACAAAGTAGGCTCG 57.973 47.619 0.00 0.00 0.00 5.03
268 269 5.335191 CCATTTCACAAGACAAAGTAGGCTC 60.335 44.000 0.00 0.00 0.00 4.70
269 270 4.520492 CCATTTCACAAGACAAAGTAGGCT 59.480 41.667 0.00 0.00 0.00 4.58
270 271 4.798574 CCATTTCACAAGACAAAGTAGGC 58.201 43.478 0.00 0.00 0.00 3.93
271 272 4.321230 GGCCATTTCACAAGACAAAGTAGG 60.321 45.833 0.00 0.00 0.00 3.18
272 273 4.278170 TGGCCATTTCACAAGACAAAGTAG 59.722 41.667 0.00 0.00 0.00 2.57
273 274 4.211125 TGGCCATTTCACAAGACAAAGTA 58.789 39.130 0.00 0.00 0.00 2.24
274 275 3.030291 TGGCCATTTCACAAGACAAAGT 58.970 40.909 0.00 0.00 0.00 2.66
275 276 3.731652 TGGCCATTTCACAAGACAAAG 57.268 42.857 0.00 0.00 0.00 2.77
276 277 3.640498 TGATGGCCATTTCACAAGACAAA 59.360 39.130 21.84 0.00 0.00 2.83
277 278 3.229293 TGATGGCCATTTCACAAGACAA 58.771 40.909 21.84 0.00 0.00 3.18
278 279 2.874014 TGATGGCCATTTCACAAGACA 58.126 42.857 21.84 6.79 0.00 3.41
279 280 3.777478 CATGATGGCCATTTCACAAGAC 58.223 45.455 21.84 3.83 31.94 3.01
280 281 2.166870 GCATGATGGCCATTTCACAAGA 59.833 45.455 21.84 0.00 31.94 3.02
281 282 2.093921 TGCATGATGGCCATTTCACAAG 60.094 45.455 21.84 11.19 31.94 3.16
282 283 1.900486 TGCATGATGGCCATTTCACAA 59.100 42.857 21.84 1.57 31.94 3.33
283 284 1.558233 TGCATGATGGCCATTTCACA 58.442 45.000 21.84 13.74 31.94 3.58
284 285 2.479837 CATGCATGATGGCCATTTCAC 58.520 47.619 22.59 11.05 31.94 3.18
285 286 1.202592 GCATGCATGATGGCCATTTCA 60.203 47.619 30.64 16.17 31.94 2.69
286 287 1.070134 AGCATGCATGATGGCCATTTC 59.930 47.619 30.64 9.88 31.94 2.17
287 288 1.128200 AGCATGCATGATGGCCATTT 58.872 45.000 30.64 8.09 31.94 2.32
288 289 1.070134 GAAGCATGCATGATGGCCATT 59.930 47.619 30.64 7.65 31.94 3.16
289 290 0.679505 GAAGCATGCATGATGGCCAT 59.320 50.000 30.64 20.96 35.44 4.40
290 291 1.396607 GGAAGCATGCATGATGGCCA 61.397 55.000 30.64 8.56 31.99 5.36
291 292 1.366366 GGAAGCATGCATGATGGCC 59.634 57.895 30.64 23.42 31.99 5.36
292 293 1.007734 CGGAAGCATGCATGATGGC 60.008 57.895 30.64 18.75 31.99 4.40
293 294 0.591659 CTCGGAAGCATGCATGATGG 59.408 55.000 30.64 16.52 31.99 3.51
294 295 1.531578 CTCTCGGAAGCATGCATGATG 59.468 52.381 30.64 12.57 34.84 3.07
295 296 1.880271 CTCTCGGAAGCATGCATGAT 58.120 50.000 30.64 22.50 0.00 2.45
296 297 0.812811 GCTCTCGGAAGCATGCATGA 60.813 55.000 30.64 10.48 42.05 3.07
297 298 0.814410 AGCTCTCGGAAGCATGCATG 60.814 55.000 22.70 22.70 45.00 4.06
298 299 0.107312 AAGCTCTCGGAAGCATGCAT 60.107 50.000 21.98 8.13 45.00 3.96
299 300 0.742281 GAAGCTCTCGGAAGCATGCA 60.742 55.000 21.98 0.00 45.00 3.96
300 301 0.461693 AGAAGCTCTCGGAAGCATGC 60.462 55.000 10.51 10.51 45.00 4.06
301 302 1.134877 TGAGAAGCTCTCGGAAGCATG 60.135 52.381 11.65 0.00 46.25 4.06
302 303 1.189752 TGAGAAGCTCTCGGAAGCAT 58.810 50.000 11.65 0.61 46.25 3.79
303 304 1.135915 GATGAGAAGCTCTCGGAAGCA 59.864 52.381 11.65 0.00 46.25 3.91
304 305 1.537990 GGATGAGAAGCTCTCGGAAGC 60.538 57.143 8.15 2.17 46.25 3.86
305 306 1.068434 GGGATGAGAAGCTCTCGGAAG 59.932 57.143 8.15 0.00 46.25 3.46
306 307 1.115467 GGGATGAGAAGCTCTCGGAA 58.885 55.000 8.15 0.00 46.25 4.30
307 308 0.260230 AGGGATGAGAAGCTCTCGGA 59.740 55.000 8.15 0.00 46.25 4.55
308 309 0.673437 GAGGGATGAGAAGCTCTCGG 59.327 60.000 8.15 0.00 46.25 4.63
309 310 0.673437 GGAGGGATGAGAAGCTCTCG 59.327 60.000 8.15 0.00 46.25 4.04
310 311 1.688197 CTGGAGGGATGAGAAGCTCTC 59.312 57.143 6.31 6.31 43.65 3.20
311 312 1.008206 ACTGGAGGGATGAGAAGCTCT 59.992 52.381 0.00 0.00 0.00 4.09
312 313 1.494960 ACTGGAGGGATGAGAAGCTC 58.505 55.000 0.00 0.00 0.00 4.09
313 314 1.836802 GAACTGGAGGGATGAGAAGCT 59.163 52.381 0.00 0.00 0.00 3.74
314 315 1.134250 GGAACTGGAGGGATGAGAAGC 60.134 57.143 0.00 0.00 0.00 3.86
315 316 2.191400 TGGAACTGGAGGGATGAGAAG 58.809 52.381 0.00 0.00 0.00 2.85
316 317 2.342406 TGGAACTGGAGGGATGAGAA 57.658 50.000 0.00 0.00 0.00 2.87
317 318 2.022625 AGATGGAACTGGAGGGATGAGA 60.023 50.000 0.00 0.00 0.00 3.27
318 319 2.104451 CAGATGGAACTGGAGGGATGAG 59.896 54.545 0.00 0.00 34.64 2.90
319 320 2.121948 CAGATGGAACTGGAGGGATGA 58.878 52.381 0.00 0.00 34.64 2.92
320 321 1.476471 GCAGATGGAACTGGAGGGATG 60.476 57.143 0.00 0.00 38.22 3.51
321 322 0.842635 GCAGATGGAACTGGAGGGAT 59.157 55.000 0.00 0.00 38.22 3.85
322 323 0.252881 AGCAGATGGAACTGGAGGGA 60.253 55.000 0.00 0.00 38.22 4.20
323 324 0.179936 GAGCAGATGGAACTGGAGGG 59.820 60.000 0.00 0.00 38.22 4.30
324 325 0.907486 TGAGCAGATGGAACTGGAGG 59.093 55.000 0.00 0.00 38.22 4.30
325 326 1.829849 TCTGAGCAGATGGAACTGGAG 59.170 52.381 0.00 0.00 38.22 3.86
326 327 1.552337 GTCTGAGCAGATGGAACTGGA 59.448 52.381 3.19 0.00 39.97 3.86
327 328 1.406614 GGTCTGAGCAGATGGAACTGG 60.407 57.143 3.19 0.00 39.97 4.00
328 329 1.738365 CGGTCTGAGCAGATGGAACTG 60.738 57.143 7.70 0.00 39.97 3.16
329 330 0.534412 CGGTCTGAGCAGATGGAACT 59.466 55.000 7.70 0.00 39.97 3.01
332 333 0.976641 AAACGGTCTGAGCAGATGGA 59.023 50.000 7.70 0.00 39.97 3.41
335 336 1.070758 ACACAAACGGTCTGAGCAGAT 59.929 47.619 7.70 0.00 39.97 2.90
352 353 2.159881 GCTGATTACGACGTTTGGACAC 60.160 50.000 5.50 0.00 0.00 3.67
353 354 2.063266 GCTGATTACGACGTTTGGACA 58.937 47.619 5.50 0.00 0.00 4.02
354 355 2.092211 CAGCTGATTACGACGTTTGGAC 59.908 50.000 8.42 0.00 0.00 4.02
355 356 2.333926 CAGCTGATTACGACGTTTGGA 58.666 47.619 8.42 0.00 0.00 3.53
360 363 1.516386 CGGCAGCTGATTACGACGT 60.516 57.895 20.43 5.52 0.00 4.34
366 369 2.514592 GCTGGCGGCAGCTGATTA 60.515 61.111 45.45 9.00 44.31 1.75
444 447 4.096382 ACAGCGAGTTTCAGAACAAAATGT 59.904 37.500 0.00 0.00 38.26 2.71
445 448 4.601019 ACAGCGAGTTTCAGAACAAAATG 58.399 39.130 0.00 0.00 38.26 2.32
454 457 0.778815 GACGTGACAGCGAGTTTCAG 59.221 55.000 0.00 0.00 35.59 3.02
455 458 0.384309 AGACGTGACAGCGAGTTTCA 59.616 50.000 0.00 0.00 35.59 2.69
484 494 5.070714 TGCATGGCCAGCTTAATGAATTAAT 59.929 36.000 22.36 0.00 32.36 1.40
485 495 4.405036 TGCATGGCCAGCTTAATGAATTAA 59.595 37.500 22.36 0.00 0.00 1.40
489 499 1.849977 TGCATGGCCAGCTTAATGAA 58.150 45.000 22.36 3.74 0.00 2.57
507 517 4.316205 AATAACAGATGGTGCATGCATG 57.684 40.909 25.64 22.70 0.00 4.06
508 518 5.347620 AAAATAACAGATGGTGCATGCAT 57.652 34.783 25.64 8.04 0.00 3.96
509 519 4.804868 AAAATAACAGATGGTGCATGCA 57.195 36.364 18.46 18.46 0.00 3.96
532 542 4.523943 AGATGGTGCATGCTACTTCAAAAA 59.476 37.500 20.33 0.00 0.00 1.94
533 543 4.081406 AGATGGTGCATGCTACTTCAAAA 58.919 39.130 20.33 0.00 0.00 2.44
534 544 3.441222 CAGATGGTGCATGCTACTTCAAA 59.559 43.478 20.33 0.00 0.00 2.69
535 545 3.011818 CAGATGGTGCATGCTACTTCAA 58.988 45.455 20.33 0.00 0.00 2.69
536 546 2.026915 ACAGATGGTGCATGCTACTTCA 60.027 45.455 20.33 9.96 0.00 3.02
537 547 2.636830 ACAGATGGTGCATGCTACTTC 58.363 47.619 20.33 17.22 0.00 3.01
538 548 2.795231 ACAGATGGTGCATGCTACTT 57.205 45.000 20.33 9.58 0.00 2.24
539 549 2.795231 AACAGATGGTGCATGCTACT 57.205 45.000 20.33 7.91 0.00 2.57
540 550 2.874701 CCTAACAGATGGTGCATGCTAC 59.125 50.000 20.33 14.70 0.00 3.58
541 551 2.746142 GCCTAACAGATGGTGCATGCTA 60.746 50.000 20.33 5.77 0.00 3.49
542 552 2.020694 GCCTAACAGATGGTGCATGCT 61.021 52.381 20.33 0.00 0.00 3.79
555 565 0.178903 AGAGGGTGACAGGCCTAACA 60.179 55.000 3.98 5.86 0.00 2.41
617 631 1.918609 CTAGCGGTCAAAGTTACGAGC 59.081 52.381 0.00 0.00 0.00 5.03
621 635 4.240096 TGTTAGCTAGCGGTCAAAGTTAC 58.760 43.478 9.55 0.00 0.00 2.50
623 637 3.396260 TGTTAGCTAGCGGTCAAAGTT 57.604 42.857 9.55 0.00 0.00 2.66
624 638 3.244112 ACTTGTTAGCTAGCGGTCAAAGT 60.244 43.478 9.55 13.38 0.00 2.66
625 639 3.326747 ACTTGTTAGCTAGCGGTCAAAG 58.673 45.455 9.55 12.78 0.00 2.77
627 641 3.064207 CAACTTGTTAGCTAGCGGTCAA 58.936 45.455 9.55 13.82 0.00 3.18
628 642 2.036733 ACAACTTGTTAGCTAGCGGTCA 59.963 45.455 9.55 6.86 0.00 4.02
629 643 2.666994 GACAACTTGTTAGCTAGCGGTC 59.333 50.000 9.55 4.18 0.00 4.79
630 644 2.036733 TGACAACTTGTTAGCTAGCGGT 59.963 45.455 9.55 2.08 0.00 5.68
631 645 2.683968 TGACAACTTGTTAGCTAGCGG 58.316 47.619 9.55 1.47 0.00 5.52
632 646 4.026475 GCTATGACAACTTGTTAGCTAGCG 60.026 45.833 9.55 0.00 35.13 4.26
633 647 5.006165 CAGCTATGACAACTTGTTAGCTAGC 59.994 44.000 20.47 15.11 42.13 3.42
634 648 6.102663 ACAGCTATGACAACTTGTTAGCTAG 58.897 40.000 20.47 17.44 42.13 3.42
635 649 6.037786 ACAGCTATGACAACTTGTTAGCTA 57.962 37.500 20.47 0.00 42.13 3.32
636 650 4.899502 ACAGCTATGACAACTTGTTAGCT 58.100 39.130 17.22 17.22 43.79 3.32
638 652 6.545504 ACAACAGCTATGACAACTTGTTAG 57.454 37.500 5.74 0.00 0.00 2.34
677 901 1.126846 GCCATGAAGAGTCAACGTTCG 59.873 52.381 0.00 0.00 37.30 3.95
755 980 1.347707 TGCACTGGAGTACTTGAAGGG 59.652 52.381 0.00 0.00 0.00 3.95
847 1072 3.319122 GCAAGAGGTTCATGGTGAGTTTT 59.681 43.478 0.00 0.00 0.00 2.43
993 1235 2.210116 ACGCACGAGCCCATTTATTAG 58.790 47.619 0.00 0.00 37.52 1.73
1057 1302 2.594303 CGCTGTCTTGGTGGCCAA 60.594 61.111 7.24 0.00 41.69 4.52
1071 1316 1.874345 CTACGTCCACCACCTTCGCT 61.874 60.000 0.00 0.00 0.00 4.93
1094 1339 3.197790 CGAACTGCGCCATGGAGG 61.198 66.667 18.40 7.48 41.01 4.30
1131 1376 1.007842 TGTACACTATCCAGGGCCTCA 59.992 52.381 0.95 0.00 0.00 3.86
1270 1515 2.359850 GAGCGTGGACATGGGCAA 60.360 61.111 0.00 0.00 0.00 4.52
1477 1722 0.395173 TGATCCGATCCACCGTCTGA 60.395 55.000 5.91 0.00 0.00 3.27
1512 1757 1.518572 CTCATCGCCGCCGTACTTT 60.519 57.895 0.00 0.00 35.54 2.66
1545 1790 1.484240 CCCCAACTAGCTCTCTTCCTG 59.516 57.143 0.00 0.00 0.00 3.86
1546 1791 1.079658 ACCCCAACTAGCTCTCTTCCT 59.920 52.381 0.00 0.00 0.00 3.36
1555 1800 1.378646 GGCTTCCACCCCAACTAGC 60.379 63.158 0.00 0.00 0.00 3.42
1556 1801 1.078426 CGGCTTCCACCCCAACTAG 60.078 63.158 0.00 0.00 0.00 2.57
1605 1850 4.335647 CTCAGCGTTGGGGTGCCT 62.336 66.667 0.00 0.00 43.83 4.75
1662 1907 7.405292 TCCCAAGAATCTAACTGTTGAATCAT 58.595 34.615 2.69 0.00 0.00 2.45
1672 1917 4.175962 TCCCAACTCCCAAGAATCTAACT 58.824 43.478 0.00 0.00 0.00 2.24
1676 1921 2.307098 CACTCCCAACTCCCAAGAATCT 59.693 50.000 0.00 0.00 0.00 2.40
1740 2066 5.313712 ACAAACTGGACCGATTAACTCAAT 58.686 37.500 0.00 0.00 0.00 2.57
1741 2067 4.710324 ACAAACTGGACCGATTAACTCAA 58.290 39.130 0.00 0.00 0.00 3.02
1742 2068 4.345859 ACAAACTGGACCGATTAACTCA 57.654 40.909 0.00 0.00 0.00 3.41
1743 2069 4.612939 GCAACAAACTGGACCGATTAACTC 60.613 45.833 0.00 0.00 0.00 3.01
1749 2075 0.534203 ACGCAACAAACTGGACCGAT 60.534 50.000 0.00 0.00 0.00 4.18
1751 2077 0.591236 CAACGCAACAAACTGGACCG 60.591 55.000 0.00 0.00 0.00 4.79
1760 2086 2.876879 CGGTCGAGCAACGCAACAA 61.877 57.895 15.89 0.00 42.26 2.83
1766 2092 2.394545 TATACATCGGTCGAGCAACG 57.605 50.000 15.89 3.94 44.09 4.10
1821 2321 1.424403 TTACACGTGCACATCGAAGG 58.576 50.000 17.22 0.40 0.00 3.46
1832 2332 8.678510 GTTTTCACAATACAGATTTTACACGTG 58.321 33.333 15.48 15.48 0.00 4.49
1861 2361 8.084684 TCATGCAGTGTCAGTATCTGTATATTC 58.915 37.037 0.00 0.00 34.02 1.75
1862 2362 7.955918 TCATGCAGTGTCAGTATCTGTATATT 58.044 34.615 0.00 0.00 34.02 1.28
1895 2419 5.652452 AGAATGCTAGGTCCAAAATTGTACC 59.348 40.000 0.00 0.00 37.43 3.34
1896 2420 6.151144 ACAGAATGCTAGGTCCAAAATTGTAC 59.849 38.462 0.00 0.00 42.53 2.90
1897 2421 6.245408 ACAGAATGCTAGGTCCAAAATTGTA 58.755 36.000 0.00 0.00 42.53 2.41
1949 2473 3.752339 GGAGCGGGCAAAAGCTGG 61.752 66.667 0.00 0.00 44.69 4.85
1959 2483 2.773993 TAGTTTAACCTTGGAGCGGG 57.226 50.000 0.00 0.00 0.00 6.13
1960 2484 4.138487 AGATAGTTTAACCTTGGAGCGG 57.862 45.455 0.00 0.00 0.00 5.52
1965 2489 6.715264 ACAGACCAAAGATAGTTTAACCTTGG 59.285 38.462 0.00 0.00 0.00 3.61
1989 2513 6.128117 TGTTCGGGCAATTAAATCTGAACTAC 60.128 38.462 12.93 0.00 42.66 2.73
2033 2954 9.158233 CCTCACAAAATCATTAAATGCAAGAAT 57.842 29.630 0.00 0.00 0.00 2.40
2054 3365 2.009774 GCACATACCACATCACCTCAC 58.990 52.381 0.00 0.00 0.00 3.51
2057 3368 0.901827 TCGCACATACCACATCACCT 59.098 50.000 0.00 0.00 0.00 4.00
2059 3371 3.822594 TTTTCGCACATACCACATCAC 57.177 42.857 0.00 0.00 0.00 3.06
2092 3404 3.381272 ACCATCAAACGCCATAATCCAAG 59.619 43.478 0.00 0.00 0.00 3.61
2145 3481 5.336372 GCACCACCAAAATGTGTACATGTAT 60.336 40.000 9.18 0.00 36.56 2.29
2155 3491 5.105146 TCAAGTTTTAGCACCACCAAAATGT 60.105 36.000 0.00 0.00 0.00 2.71
2156 3492 5.234116 GTCAAGTTTTAGCACCACCAAAATG 59.766 40.000 0.00 0.00 0.00 2.32
2160 3496 3.129638 GTGTCAAGTTTTAGCACCACCAA 59.870 43.478 0.00 0.00 0.00 3.67
2162 3498 2.685897 TGTGTCAAGTTTTAGCACCACC 59.314 45.455 0.00 0.00 0.00 4.61
2205 3541 2.679059 CGACCTCTGCATCAGGTGATTT 60.679 50.000 19.77 0.00 44.87 2.17
2206 3542 1.134580 CGACCTCTGCATCAGGTGATT 60.135 52.381 19.77 0.00 44.87 2.57
2224 3560 2.448453 GAAAGAGGGGAAGACTCTCGA 58.552 52.381 0.00 0.00 44.17 4.04
2268 4982 5.964477 ACCACCTCCTATGTAATCTTCTCAA 59.036 40.000 0.00 0.00 0.00 3.02
2269 4983 5.529289 ACCACCTCCTATGTAATCTTCTCA 58.471 41.667 0.00 0.00 0.00 3.27
2273 4987 5.036916 TCCAACCACCTCCTATGTAATCTT 58.963 41.667 0.00 0.00 0.00 2.40
2283 4997 1.770110 TGCACTCCAACCACCTCCT 60.770 57.895 0.00 0.00 0.00 3.69
2314 5028 3.118702 GGTAGAGTTGCTCTTAGGAACCC 60.119 52.174 7.57 0.00 46.08 4.11
2315 5029 3.514309 TGGTAGAGTTGCTCTTAGGAACC 59.486 47.826 7.57 6.12 46.08 3.62
2318 5032 6.213600 AGAATTTGGTAGAGTTGCTCTTAGGA 59.786 38.462 3.87 0.00 41.50 2.94
2335 5049 4.381292 GGGAGTTGAGCATTGAGAATTTGG 60.381 45.833 0.00 0.00 0.00 3.28
2341 5055 3.507162 TTTGGGAGTTGAGCATTGAGA 57.493 42.857 0.00 0.00 0.00 3.27
2347 5061 1.748493 GTGTGTTTTGGGAGTTGAGCA 59.252 47.619 0.00 0.00 0.00 4.26
2351 5065 5.752955 CCAAATAAGTGTGTTTTGGGAGTTG 59.247 40.000 5.88 0.00 43.60 3.16
2392 5108 3.458487 GGTCACAACCTCCCAATACCTAT 59.542 47.826 0.00 0.00 42.80 2.57
2417 5164 4.018688 GGGAGTTAAGTTTAGGGGATGTGT 60.019 45.833 0.00 0.00 0.00 3.72
2447 5194 9.883142 AAAGAGATGAGGACTAGTAAATGAAAG 57.117 33.333 0.00 0.00 0.00 2.62
2448 5195 9.877178 GAAAGAGATGAGGACTAGTAAATGAAA 57.123 33.333 0.00 0.00 0.00 2.69
2462 5209 5.289675 GTGTTCATACACGAAAGAGATGAGG 59.710 44.000 0.00 0.00 44.66 3.86
2476 5223 6.890979 TGATGTGAAAATGGTGTTCATACA 57.109 33.333 0.00 0.00 37.34 2.29
2524 5279 3.549873 TGTTGCTAAACTTTGCGCTTTTC 59.450 39.130 9.73 0.00 37.19 2.29
2531 5286 7.741652 GCATTCTAAAATGTTGCTAAACTTTGC 59.258 33.333 0.63 0.00 43.54 3.68
2567 5322 7.549134 GGGGTTATCATTGGAAAGTGAAAATTC 59.451 37.037 0.00 0.00 0.00 2.17
2585 5340 1.066430 TCTTGCGTGAGTGGGGTTATC 60.066 52.381 0.00 0.00 0.00 1.75
2586 5341 0.981183 TCTTGCGTGAGTGGGGTTAT 59.019 50.000 0.00 0.00 0.00 1.89
2587 5342 0.759959 TTCTTGCGTGAGTGGGGTTA 59.240 50.000 0.00 0.00 0.00 2.85
2592 5347 2.350772 GGTTGAATTCTTGCGTGAGTGG 60.351 50.000 7.05 0.00 0.00 4.00
2617 5372 5.741011 TCTTTGGGGTGATATGAAGTGTAC 58.259 41.667 0.00 0.00 0.00 2.90
2623 5378 9.928618 TTAATAACATCTTTGGGGTGATATGAA 57.071 29.630 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.