Multiple sequence alignment - TraesCS5B01G270100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G270100 chr5B 100.000 2905 0 0 1 2905 455741838 455738934 0.000000e+00 5365.0
1 TraesCS5B01G270100 chr5B 92.697 178 11 2 80 257 625446093 625446268 3.710000e-64 255.0
2 TraesCS5B01G270100 chr5B 92.265 181 13 1 80 260 632812095 632811916 3.710000e-64 255.0
3 TraesCS5B01G270100 chr5B 92.135 178 13 1 80 257 629074193 629074369 1.730000e-62 250.0
4 TraesCS5B01G270100 chr5B 94.253 87 5 0 1971 2057 330678015 330677929 1.820000e-27 134.0
5 TraesCS5B01G270100 chr5B 94.737 38 2 0 32 69 605737367 605737404 3.130000e-05 60.2
6 TraesCS5B01G270100 chr5D 92.285 1374 57 19 630 1974 379796907 379795554 0.000000e+00 1905.0
7 TraesCS5B01G270100 chr5D 90.674 579 26 12 2054 2623 379795557 379794998 0.000000e+00 745.0
8 TraesCS5B01G270100 chr5D 96.951 328 4 3 2579 2905 379794997 379794675 1.970000e-151 545.0
9 TraesCS5B01G270100 chr5D 89.224 232 19 4 30 258 521104475 521104247 4.740000e-73 285.0
10 TraesCS5B01G270100 chr5D 92.135 178 13 1 80 257 498923310 498923486 1.730000e-62 250.0
11 TraesCS5B01G270100 chr5A 91.460 1370 60 29 630 1974 480293326 480291989 0.000000e+00 1829.0
12 TraesCS5B01G270100 chr5A 93.435 655 25 9 2250 2903 480289854 480289217 0.000000e+00 955.0
13 TraesCS5B01G270100 chr5A 92.079 202 7 6 2054 2250 480291992 480291795 2.850000e-70 276.0
14 TraesCS5B01G270100 chr5A 82.812 128 13 6 269 390 480293646 480293522 3.960000e-19 106.0
15 TraesCS5B01G270100 chr5A 74.459 231 41 10 32 246 616623111 616622883 1.860000e-12 84.2
16 TraesCS5B01G270100 chr5A 94.000 50 2 1 2300 2349 169798629 169798677 1.120000e-09 75.0
17 TraesCS5B01G270100 chr2D 91.667 192 12 4 72 262 19617272 19617084 2.220000e-66 263.0
18 TraesCS5B01G270100 chr6D 89.637 193 17 3 70 260 95269806 95269615 2.890000e-60 243.0
19 TraesCS5B01G270100 chr7B 89.894 188 17 2 70 257 596310933 596311118 1.040000e-59 241.0
20 TraesCS5B01G270100 chr7B 85.470 234 23 10 31 257 655109029 655109258 1.740000e-57 233.0
21 TraesCS5B01G270100 chr7B 91.753 97 6 2 1962 2057 48190914 48190819 1.820000e-27 134.0
22 TraesCS5B01G270100 chr6A 91.667 96 7 1 1972 2066 604198320 604198415 6.530000e-27 132.0
23 TraesCS5B01G270100 chr6A 90.625 96 9 0 1961 2056 535451627 535451532 8.450000e-26 128.0
24 TraesCS5B01G270100 chr3B 94.186 86 5 0 1971 2056 107157957 107158042 6.530000e-27 132.0
25 TraesCS5B01G270100 chr3B 92.391 92 6 1 1966 2056 173382174 173382265 2.350000e-26 130.0
26 TraesCS5B01G270100 chr1D 94.186 86 5 0 1972 2057 243753299 243753384 6.530000e-27 132.0
27 TraesCS5B01G270100 chr1D 85.556 90 1 5 32 109 209139190 209139279 1.860000e-12 84.2
28 TraesCS5B01G270100 chr4B 93.023 86 6 0 1972 2057 1994969 1994884 3.040000e-25 126.0
29 TraesCS5B01G270100 chr4B 91.304 92 8 0 1972 2063 507357772 507357681 3.040000e-25 126.0
30 TraesCS5B01G270100 chr4B 75.314 239 44 10 32 257 39824359 39824595 1.840000e-17 100.0
31 TraesCS5B01G270100 chr3A 77.551 147 27 6 116 260 74079164 74079022 1.860000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G270100 chr5B 455738934 455741838 2904 True 5365.0 5365 100.000000 1 2905 1 chr5B.!!$R2 2904
1 TraesCS5B01G270100 chr5D 379794675 379796907 2232 True 1065.0 1905 93.303333 630 2905 3 chr5D.!!$R2 2275
2 TraesCS5B01G270100 chr5A 480289217 480293646 4429 True 791.5 1829 89.946500 269 2903 4 chr5A.!!$R2 2634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 634 0.0293 TCACGTCAAGCAAAAGCAGC 59.971 50.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2000 0.179127 ACATCACTCGCCATCAGACG 60.179 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.904287 TTGGTGAGGAATTTGTCGGG 58.096 50.000 0.00 0.00 0.00 5.14
22 23 0.608035 TGGTGAGGAATTTGTCGGGC 60.608 55.000 0.00 0.00 0.00 6.13
23 24 1.313091 GGTGAGGAATTTGTCGGGCC 61.313 60.000 0.00 0.00 0.00 5.80
24 25 0.608035 GTGAGGAATTTGTCGGGCCA 60.608 55.000 4.39 0.00 0.00 5.36
25 26 0.111446 TGAGGAATTTGTCGGGCCAA 59.889 50.000 4.39 0.00 0.00 4.52
26 27 1.253100 GAGGAATTTGTCGGGCCAAA 58.747 50.000 4.39 0.00 38.58 3.28
27 28 1.616374 GAGGAATTTGTCGGGCCAAAA 59.384 47.619 4.39 0.94 37.81 2.44
28 29 1.618343 AGGAATTTGTCGGGCCAAAAG 59.382 47.619 4.39 0.00 37.81 2.27
29 30 1.343142 GGAATTTGTCGGGCCAAAAGT 59.657 47.619 4.39 0.00 37.81 2.66
30 31 2.403259 GAATTTGTCGGGCCAAAAGTG 58.597 47.619 4.39 0.00 37.81 3.16
31 32 1.408969 ATTTGTCGGGCCAAAAGTGT 58.591 45.000 4.39 0.00 37.81 3.55
32 33 2.054232 TTTGTCGGGCCAAAAGTGTA 57.946 45.000 4.39 0.00 31.66 2.90
33 34 1.310904 TTGTCGGGCCAAAAGTGTAC 58.689 50.000 4.39 0.00 0.00 2.90
34 35 0.470766 TGTCGGGCCAAAAGTGTACT 59.529 50.000 4.39 0.00 0.00 2.73
35 36 1.154197 GTCGGGCCAAAAGTGTACTC 58.846 55.000 4.39 0.00 0.00 2.59
36 37 0.035739 TCGGGCCAAAAGTGTACTCC 59.964 55.000 4.39 0.00 0.00 3.85
37 38 0.958876 CGGGCCAAAAGTGTACTCCC 60.959 60.000 4.39 0.00 0.00 4.30
38 39 0.404426 GGGCCAAAAGTGTACTCCCT 59.596 55.000 4.39 0.00 0.00 4.20
39 40 1.613520 GGGCCAAAAGTGTACTCCCTC 60.614 57.143 4.39 0.00 0.00 4.30
40 41 1.613520 GGCCAAAAGTGTACTCCCTCC 60.614 57.143 0.00 0.00 0.00 4.30
41 42 1.351350 GCCAAAAGTGTACTCCCTCCT 59.649 52.381 0.00 0.00 0.00 3.69
42 43 2.224793 GCCAAAAGTGTACTCCCTCCTT 60.225 50.000 0.00 0.00 0.00 3.36
43 44 3.676093 CCAAAAGTGTACTCCCTCCTTC 58.324 50.000 0.00 0.00 0.00 3.46
44 45 3.559384 CCAAAAGTGTACTCCCTCCTTCC 60.559 52.174 0.00 0.00 0.00 3.46
45 46 2.715763 AAGTGTACTCCCTCCTTCCA 57.284 50.000 0.00 0.00 0.00 3.53
46 47 2.950990 AGTGTACTCCCTCCTTCCAT 57.049 50.000 0.00 0.00 0.00 3.41
47 48 4.348020 AAGTGTACTCCCTCCTTCCATA 57.652 45.455 0.00 0.00 0.00 2.74
48 49 4.561254 AGTGTACTCCCTCCTTCCATAT 57.439 45.455 0.00 0.00 0.00 1.78
49 50 5.681494 AGTGTACTCCCTCCTTCCATATA 57.319 43.478 0.00 0.00 0.00 0.86
50 51 6.234404 AGTGTACTCCCTCCTTCCATATAT 57.766 41.667 0.00 0.00 0.00 0.86
51 52 7.358255 AGTGTACTCCCTCCTTCCATATATA 57.642 40.000 0.00 0.00 0.00 0.86
52 53 7.956357 AGTGTACTCCCTCCTTCCATATATAT 58.044 38.462 0.00 0.00 0.00 0.86
53 54 9.081508 AGTGTACTCCCTCCTTCCATATATATA 57.918 37.037 0.00 0.00 0.00 0.86
54 55 9.884814 GTGTACTCCCTCCTTCCATATATATAT 57.115 37.037 0.00 0.00 0.00 0.86
58 59 8.692811 ACTCCCTCCTTCCATATATATATAGGG 58.307 40.741 22.25 22.25 40.49 3.53
59 60 7.488205 TCCCTCCTTCCATATATATATAGGGC 58.512 42.308 23.08 0.00 39.34 5.19
60 61 6.674419 CCCTCCTTCCATATATATATAGGGCC 59.326 46.154 23.08 0.00 39.34 5.80
61 62 7.481376 CCCTCCTTCCATATATATATAGGGCCT 60.481 44.444 23.08 12.58 39.34 5.19
62 63 7.621683 CCTCCTTCCATATATATATAGGGCCTC 59.378 44.444 23.08 0.00 39.34 4.70
63 64 8.080658 TCCTTCCATATATATATAGGGCCTCA 57.919 38.462 23.08 8.12 39.34 3.86
64 65 8.701321 TCCTTCCATATATATATAGGGCCTCAT 58.299 37.037 23.08 7.65 39.34 2.90
65 66 8.766476 CCTTCCATATATATATAGGGCCTCATG 58.234 40.741 23.08 11.44 39.34 3.07
66 67 7.739995 TCCATATATATATAGGGCCTCATGC 57.260 40.000 23.08 0.00 39.34 4.06
67 68 6.381133 TCCATATATATATAGGGCCTCATGCG 59.619 42.308 23.08 2.95 39.34 4.73
68 69 6.155221 CCATATATATATAGGGCCTCATGCGT 59.845 42.308 18.01 0.00 42.61 5.24
69 70 5.730296 ATATATATAGGGCCTCATGCGTC 57.270 43.478 10.74 0.00 42.61 5.19
70 71 0.905357 ATATAGGGCCTCATGCGTCC 59.095 55.000 10.74 0.00 42.61 4.79
71 72 0.178932 TATAGGGCCTCATGCGTCCT 60.179 55.000 10.74 10.23 42.61 3.85
72 73 1.056700 ATAGGGCCTCATGCGTCCTT 61.057 55.000 10.74 0.00 42.61 3.36
73 74 1.271840 TAGGGCCTCATGCGTCCTTT 61.272 55.000 10.74 0.00 42.61 3.11
74 75 2.409870 GGGCCTCATGCGTCCTTTG 61.410 63.158 0.84 0.00 42.61 2.77
75 76 1.377202 GGCCTCATGCGTCCTTTGA 60.377 57.895 0.00 0.00 42.61 2.69
76 77 0.749454 GGCCTCATGCGTCCTTTGAT 60.749 55.000 0.00 0.00 42.61 2.57
77 78 0.659957 GCCTCATGCGTCCTTTGATC 59.340 55.000 0.00 0.00 0.00 2.92
78 79 2.013563 GCCTCATGCGTCCTTTGATCA 61.014 52.381 0.00 0.00 0.00 2.92
79 80 2.358957 CCTCATGCGTCCTTTGATCAA 58.641 47.619 3.38 3.38 0.00 2.57
80 81 2.947652 CCTCATGCGTCCTTTGATCAAT 59.052 45.455 9.40 0.00 0.00 2.57
81 82 3.242969 CCTCATGCGTCCTTTGATCAATG 60.243 47.826 9.40 11.57 0.00 2.82
82 83 3.608796 TCATGCGTCCTTTGATCAATGA 58.391 40.909 19.94 12.27 0.00 2.57
83 84 4.201657 TCATGCGTCCTTTGATCAATGAT 58.798 39.130 19.94 0.00 0.00 2.45
84 85 5.367302 TCATGCGTCCTTTGATCAATGATA 58.633 37.500 19.94 7.38 0.00 2.15
85 86 5.821995 TCATGCGTCCTTTGATCAATGATAA 59.178 36.000 19.94 0.10 0.00 1.75
86 87 6.318396 TCATGCGTCCTTTGATCAATGATAAA 59.682 34.615 19.94 0.00 0.00 1.40
87 88 6.507958 TGCGTCCTTTGATCAATGATAAAA 57.492 33.333 19.94 5.69 0.00 1.52
88 89 7.099266 TGCGTCCTTTGATCAATGATAAAAT 57.901 32.000 19.94 0.00 0.00 1.82
89 90 7.546358 TGCGTCCTTTGATCAATGATAAAATT 58.454 30.769 19.94 0.00 0.00 1.82
90 91 8.681806 TGCGTCCTTTGATCAATGATAAAATTA 58.318 29.630 19.94 0.00 0.00 1.40
91 92 9.683069 GCGTCCTTTGATCAATGATAAAATTAT 57.317 29.630 19.94 0.00 0.00 1.28
149 150 9.653287 ATCATTAGAAACTTCTTTCACATACGA 57.347 29.630 0.00 0.00 38.67 3.43
150 151 9.653287 TCATTAGAAACTTCTTTCACATACGAT 57.347 29.630 0.00 0.00 38.67 3.73
154 155 8.378172 AGAAACTTCTTTCACATACGATTTCA 57.622 30.769 0.00 0.00 38.67 2.69
155 156 8.836413 AGAAACTTCTTTCACATACGATTTCAA 58.164 29.630 0.00 0.00 38.67 2.69
156 157 9.612620 GAAACTTCTTTCACATACGATTTCAAT 57.387 29.630 0.00 0.00 36.52 2.57
157 158 8.955061 AACTTCTTTCACATACGATTTCAATG 57.045 30.769 0.00 0.00 0.00 2.82
158 159 7.530010 ACTTCTTTCACATACGATTTCAATGG 58.470 34.615 0.00 0.00 0.00 3.16
159 160 7.174946 ACTTCTTTCACATACGATTTCAATGGT 59.825 33.333 0.00 0.00 0.00 3.55
160 161 8.554835 TTCTTTCACATACGATTTCAATGGTA 57.445 30.769 0.00 0.00 34.76 3.25
161 162 8.731275 TCTTTCACATACGATTTCAATGGTAT 57.269 30.769 0.00 2.31 39.78 2.73
169 170 9.333497 CATACGATTTCAATGGTATGCTTTATG 57.667 33.333 16.87 1.34 44.90 1.90
170 171 7.333528 ACGATTTCAATGGTATGCTTTATGT 57.666 32.000 0.00 0.00 0.00 2.29
171 172 8.445275 ACGATTTCAATGGTATGCTTTATGTA 57.555 30.769 0.00 0.00 0.00 2.29
172 173 8.898761 ACGATTTCAATGGTATGCTTTATGTAA 58.101 29.630 0.00 0.00 0.00 2.41
173 174 9.169468 CGATTTCAATGGTATGCTTTATGTAAC 57.831 33.333 0.00 0.00 0.00 2.50
176 177 9.800433 TTTCAATGGTATGCTTTATGTAACATG 57.200 29.630 0.00 0.00 0.00 3.21
177 178 7.424803 TCAATGGTATGCTTTATGTAACATGC 58.575 34.615 0.00 0.00 0.00 4.06
178 179 6.957920 ATGGTATGCTTTATGTAACATGCA 57.042 33.333 0.00 0.00 34.88 3.96
179 180 6.957920 TGGTATGCTTTATGTAACATGCAT 57.042 33.333 0.00 0.00 42.64 3.96
180 181 6.737118 TGGTATGCTTTATGTAACATGCATG 58.263 36.000 25.09 25.09 40.65 4.06
181 182 6.320926 TGGTATGCTTTATGTAACATGCATGT 59.679 34.615 26.61 26.61 44.20 3.21
182 183 6.857964 GGTATGCTTTATGTAACATGCATGTC 59.142 38.462 31.45 20.45 40.80 3.06
183 184 5.893897 TGCTTTATGTAACATGCATGTCA 57.106 34.783 31.45 25.11 40.80 3.58
184 185 6.453926 TGCTTTATGTAACATGCATGTCAT 57.546 33.333 31.45 29.05 40.80 3.06
185 186 7.565323 TGCTTTATGTAACATGCATGTCATA 57.435 32.000 31.45 28.10 40.80 2.15
186 187 8.168790 TGCTTTATGTAACATGCATGTCATAT 57.831 30.769 31.45 23.03 40.80 1.78
187 188 9.282569 TGCTTTATGTAACATGCATGTCATATA 57.717 29.630 31.45 24.48 40.80 0.86
193 194 8.188531 TGTAACATGCATGTCATATATCATCG 57.811 34.615 31.45 0.88 40.80 3.84
194 195 7.818930 TGTAACATGCATGTCATATATCATCGT 59.181 33.333 31.45 14.06 40.80 3.73
195 196 6.657836 ACATGCATGTCATATATCATCGTG 57.342 37.500 26.61 0.00 35.87 4.35
196 197 5.064325 ACATGCATGTCATATATCATCGTGC 59.936 40.000 26.61 13.86 35.87 5.34
197 198 4.824289 TGCATGTCATATATCATCGTGCT 58.176 39.130 18.14 0.00 40.35 4.40
198 199 5.964758 TGCATGTCATATATCATCGTGCTA 58.035 37.500 18.14 8.69 40.35 3.49
199 200 6.397272 TGCATGTCATATATCATCGTGCTAA 58.603 36.000 18.14 5.17 40.35 3.09
200 201 6.311200 TGCATGTCATATATCATCGTGCTAAC 59.689 38.462 18.14 0.00 40.35 2.34
201 202 6.237942 GCATGTCATATATCATCGTGCTAACC 60.238 42.308 13.64 0.00 37.83 2.85
202 203 5.720202 TGTCATATATCATCGTGCTAACCC 58.280 41.667 0.00 0.00 0.00 4.11
203 204 4.798907 GTCATATATCATCGTGCTAACCCG 59.201 45.833 0.00 0.00 0.00 5.28
204 205 4.461431 TCATATATCATCGTGCTAACCCGT 59.539 41.667 0.00 0.00 0.00 5.28
205 206 2.502213 TATCATCGTGCTAACCCGTG 57.498 50.000 0.00 0.00 0.00 4.94
206 207 0.821517 ATCATCGTGCTAACCCGTGA 59.178 50.000 0.00 0.00 0.00 4.35
207 208 0.821517 TCATCGTGCTAACCCGTGAT 59.178 50.000 0.00 0.00 0.00 3.06
208 209 1.202371 TCATCGTGCTAACCCGTGATC 60.202 52.381 0.00 0.00 0.00 2.92
209 210 0.821517 ATCGTGCTAACCCGTGATCA 59.178 50.000 0.00 0.00 0.00 2.92
210 211 0.604073 TCGTGCTAACCCGTGATCAA 59.396 50.000 0.00 0.00 0.00 2.57
211 212 1.001068 TCGTGCTAACCCGTGATCAAA 59.999 47.619 0.00 0.00 0.00 2.69
212 213 1.393539 CGTGCTAACCCGTGATCAAAG 59.606 52.381 0.00 0.00 0.00 2.77
213 214 2.695359 GTGCTAACCCGTGATCAAAGA 58.305 47.619 0.00 0.00 0.00 2.52
214 215 3.270877 GTGCTAACCCGTGATCAAAGAT 58.729 45.455 0.00 0.00 0.00 2.40
215 216 4.439057 GTGCTAACCCGTGATCAAAGATA 58.561 43.478 0.00 0.00 0.00 1.98
216 217 4.873827 GTGCTAACCCGTGATCAAAGATAA 59.126 41.667 0.00 0.00 0.00 1.75
217 218 4.873827 TGCTAACCCGTGATCAAAGATAAC 59.126 41.667 0.00 0.00 0.00 1.89
218 219 4.272748 GCTAACCCGTGATCAAAGATAACC 59.727 45.833 0.00 0.00 0.00 2.85
219 220 4.569719 AACCCGTGATCAAAGATAACCT 57.430 40.909 0.00 0.00 0.00 3.50
220 221 4.569719 ACCCGTGATCAAAGATAACCTT 57.430 40.909 0.00 0.00 36.47 3.50
221 222 4.261801 ACCCGTGATCAAAGATAACCTTG 58.738 43.478 0.00 0.00 34.79 3.61
222 223 4.261801 CCCGTGATCAAAGATAACCTTGT 58.738 43.478 0.00 0.00 34.79 3.16
223 224 5.046159 ACCCGTGATCAAAGATAACCTTGTA 60.046 40.000 0.00 0.00 34.79 2.41
224 225 5.878116 CCCGTGATCAAAGATAACCTTGTAA 59.122 40.000 0.00 0.00 34.79 2.41
225 226 6.373216 CCCGTGATCAAAGATAACCTTGTAAA 59.627 38.462 0.00 0.00 34.79 2.01
226 227 7.094549 CCCGTGATCAAAGATAACCTTGTAAAA 60.095 37.037 0.00 0.00 34.79 1.52
227 228 8.458843 CCGTGATCAAAGATAACCTTGTAAAAT 58.541 33.333 0.00 0.00 34.79 1.82
228 229 9.490663 CGTGATCAAAGATAACCTTGTAAAATC 57.509 33.333 0.00 0.00 34.79 2.17
229 230 9.490663 GTGATCAAAGATAACCTTGTAAAATCG 57.509 33.333 0.00 0.00 34.79 3.34
230 231 9.226606 TGATCAAAGATAACCTTGTAAAATCGT 57.773 29.630 0.00 0.00 34.79 3.73
237 238 9.269453 AGATAACCTTGTAAAATCGTATTAGGC 57.731 33.333 0.00 0.00 0.00 3.93
238 239 6.688637 AACCTTGTAAAATCGTATTAGGCC 57.311 37.500 0.00 0.00 0.00 5.19
239 240 5.128205 ACCTTGTAAAATCGTATTAGGCCC 58.872 41.667 0.00 0.00 0.00 5.80
240 241 5.104235 ACCTTGTAAAATCGTATTAGGCCCT 60.104 40.000 0.00 0.00 0.00 5.19
241 242 6.100134 ACCTTGTAAAATCGTATTAGGCCCTA 59.900 38.462 0.00 0.00 0.00 3.53
242 243 7.166167 CCTTGTAAAATCGTATTAGGCCCTAT 58.834 38.462 0.00 0.00 0.00 2.57
243 244 8.316214 CCTTGTAAAATCGTATTAGGCCCTATA 58.684 37.037 0.00 0.00 0.00 1.31
244 245 9.886132 CTTGTAAAATCGTATTAGGCCCTATAT 57.114 33.333 0.00 0.00 0.00 0.86
249 250 9.886132 AAAATCGTATTAGGCCCTATATAAGTG 57.114 33.333 0.00 0.00 0.00 3.16
250 251 7.598759 ATCGTATTAGGCCCTATATAAGTGG 57.401 40.000 0.00 0.00 0.00 4.00
251 252 6.734532 TCGTATTAGGCCCTATATAAGTGGA 58.265 40.000 0.00 0.00 0.00 4.02
252 253 7.184161 TCGTATTAGGCCCTATATAAGTGGAA 58.816 38.462 0.00 0.00 0.00 3.53
253 254 7.341256 TCGTATTAGGCCCTATATAAGTGGAAG 59.659 40.741 0.00 0.00 0.00 3.46
254 255 6.893020 ATTAGGCCCTATATAAGTGGAAGG 57.107 41.667 0.00 0.00 0.00 3.46
255 256 4.503685 AGGCCCTATATAAGTGGAAGGA 57.496 45.455 0.00 0.00 0.00 3.36
256 257 4.430441 AGGCCCTATATAAGTGGAAGGAG 58.570 47.826 0.00 0.00 0.00 3.69
257 258 4.109765 AGGCCCTATATAAGTGGAAGGAGA 59.890 45.833 0.00 0.00 0.00 3.71
258 259 4.468153 GGCCCTATATAAGTGGAAGGAGAG 59.532 50.000 0.00 0.00 0.00 3.20
259 260 5.334421 GCCCTATATAAGTGGAAGGAGAGA 58.666 45.833 0.00 0.00 0.00 3.10
260 261 5.780793 GCCCTATATAAGTGGAAGGAGAGAA 59.219 44.000 0.00 0.00 0.00 2.87
261 262 6.071051 GCCCTATATAAGTGGAAGGAGAGAAG 60.071 46.154 0.00 0.00 0.00 2.85
262 263 7.242359 CCCTATATAAGTGGAAGGAGAGAAGA 58.758 42.308 0.00 0.00 0.00 2.87
263 264 7.898636 CCCTATATAAGTGGAAGGAGAGAAGAT 59.101 40.741 0.00 0.00 0.00 2.40
264 265 8.748412 CCTATATAAGTGGAAGGAGAGAAGATG 58.252 40.741 0.00 0.00 0.00 2.90
265 266 5.885449 ATAAGTGGAAGGAGAGAAGATGG 57.115 43.478 0.00 0.00 0.00 3.51
266 267 3.197927 AGTGGAAGGAGAGAAGATGGT 57.802 47.619 0.00 0.00 0.00 3.55
267 268 3.525862 AGTGGAAGGAGAGAAGATGGTT 58.474 45.455 0.00 0.00 0.00 3.67
272 273 4.447290 GAAGGAGAGAAGATGGTTTAGGC 58.553 47.826 0.00 0.00 0.00 3.93
281 282 1.214305 ATGGTTTAGGCTGGGCAGGA 61.214 55.000 0.00 0.00 0.00 3.86
283 284 0.753111 GGTTTAGGCTGGGCAGGATG 60.753 60.000 0.00 0.00 40.87 3.51
284 285 0.034089 GTTTAGGCTGGGCAGGATGT 60.034 55.000 0.00 0.00 39.31 3.06
285 286 0.034186 TTTAGGCTGGGCAGGATGTG 60.034 55.000 0.00 0.00 39.31 3.21
338 343 5.627499 TTGAGGATGAAATTCTGTTTCCG 57.373 39.130 0.00 0.00 26.50 4.30
340 345 2.420022 AGGATGAAATTCTGTTTCCGCG 59.580 45.455 0.00 0.00 23.98 6.46
341 346 2.177173 GATGAAATTCTGTTTCCGCGC 58.823 47.619 0.00 0.00 0.00 6.86
346 351 0.108992 ATTCTGTTTCCGCGCGAGTA 60.109 50.000 34.63 14.52 0.00 2.59
352 357 2.121786 GTTTCCGCGCGAGTATTATCA 58.878 47.619 34.63 0.11 0.00 2.15
355 360 1.605232 TCCGCGCGAGTATTATCAGAA 59.395 47.619 34.63 0.00 0.00 3.02
356 361 1.979469 CCGCGCGAGTATTATCAGAAG 59.021 52.381 34.63 4.73 0.00 2.85
358 363 3.493272 CGCGCGAGTATTATCAGAAGAT 58.507 45.455 28.94 0.00 38.29 2.40
363 368 5.450704 CGCGAGTATTATCAGAAGATCATCG 59.549 44.000 0.00 0.00 35.67 3.84
364 369 6.318628 GCGAGTATTATCAGAAGATCATCGT 58.681 40.000 0.00 0.00 35.67 3.73
367 372 9.827411 CGAGTATTATCAGAAGATCATCGTTTA 57.173 33.333 0.00 0.00 35.67 2.01
373 378 7.778470 ATCAGAAGATCATCGTTTAGTTTCC 57.222 36.000 0.00 0.00 0.00 3.13
387 392 2.423577 AGTTTCCGTTCTCATTTCCGG 58.576 47.619 0.00 0.00 41.75 5.14
390 395 2.554370 TCCGTTCTCATTTCCGGTTT 57.446 45.000 0.00 0.00 41.17 3.27
391 396 2.419667 TCCGTTCTCATTTCCGGTTTC 58.580 47.619 0.00 0.00 41.17 2.78
395 400 2.997986 GTTCTCATTTCCGGTTTCGCTA 59.002 45.455 0.00 0.00 34.56 4.26
396 401 3.536956 TCTCATTTCCGGTTTCGCTAT 57.463 42.857 0.00 0.00 34.56 2.97
407 425 3.187637 CGGTTTCGCTATTTCTGTTTCCA 59.812 43.478 0.00 0.00 0.00 3.53
415 433 6.826231 TCGCTATTTCTGTTTCCATTTCCATA 59.174 34.615 0.00 0.00 0.00 2.74
444 462 9.887406 TTATTTTCGTTTGGATCTTAGTGAAAC 57.113 29.630 0.00 0.00 0.00 2.78
445 463 6.928979 TTTCGTTTGGATCTTAGTGAAACA 57.071 33.333 0.00 0.00 41.43 2.83
446 464 6.928979 TTCGTTTGGATCTTAGTGAAACAA 57.071 33.333 0.00 0.00 41.43 2.83
447 465 6.928979 TCGTTTGGATCTTAGTGAAACAAA 57.071 33.333 0.00 0.00 41.43 2.83
448 466 7.323049 TCGTTTGGATCTTAGTGAAACAAAA 57.677 32.000 0.00 0.00 41.43 2.44
449 467 7.936584 TCGTTTGGATCTTAGTGAAACAAAAT 58.063 30.769 0.00 0.00 41.43 1.82
450 468 9.058174 TCGTTTGGATCTTAGTGAAACAAAATA 57.942 29.630 0.00 0.00 41.43 1.40
451 469 9.113876 CGTTTGGATCTTAGTGAAACAAAATAC 57.886 33.333 0.00 0.00 41.43 1.89
452 470 9.406828 GTTTGGATCTTAGTGAAACAAAATACC 57.593 33.333 0.00 0.00 41.43 2.73
453 471 7.696992 TGGATCTTAGTGAAACAAAATACCC 57.303 36.000 0.00 0.00 41.43 3.69
454 472 7.235079 TGGATCTTAGTGAAACAAAATACCCA 58.765 34.615 0.00 0.00 41.43 4.51
455 473 7.726291 TGGATCTTAGTGAAACAAAATACCCAA 59.274 33.333 0.00 0.00 41.43 4.12
456 474 8.027189 GGATCTTAGTGAAACAAAATACCCAAC 58.973 37.037 0.00 0.00 41.43 3.77
457 475 7.883391 TCTTAGTGAAACAAAATACCCAACA 57.117 32.000 0.00 0.00 41.43 3.33
494 512 6.254281 AGAAAATATCCAAACTTCACCACG 57.746 37.500 0.00 0.00 0.00 4.94
495 513 5.768164 AGAAAATATCCAAACTTCACCACGT 59.232 36.000 0.00 0.00 0.00 4.49
496 514 5.622770 AAATATCCAAACTTCACCACGTC 57.377 39.130 0.00 0.00 0.00 4.34
497 515 2.631160 ATCCAAACTTCACCACGTCA 57.369 45.000 0.00 0.00 0.00 4.35
498 516 1.658994 TCCAAACTTCACCACGTCAC 58.341 50.000 0.00 0.00 0.00 3.67
499 517 0.661020 CCAAACTTCACCACGTCACC 59.339 55.000 0.00 0.00 0.00 4.02
500 518 0.661020 CAAACTTCACCACGTCACCC 59.339 55.000 0.00 0.00 0.00 4.61
501 519 0.464916 AAACTTCACCACGTCACCCC 60.465 55.000 0.00 0.00 0.00 4.95
502 520 1.342672 AACTTCACCACGTCACCCCT 61.343 55.000 0.00 0.00 0.00 4.79
503 521 1.301716 CTTCACCACGTCACCCCTG 60.302 63.158 0.00 0.00 0.00 4.45
504 522 1.754380 CTTCACCACGTCACCCCTGA 61.754 60.000 0.00 0.00 0.00 3.86
505 523 1.125093 TTCACCACGTCACCCCTGAT 61.125 55.000 0.00 0.00 0.00 2.90
506 524 1.375908 CACCACGTCACCCCTGATG 60.376 63.158 0.00 0.00 39.12 3.07
507 525 2.436646 CCACGTCACCCCTGATGC 60.437 66.667 0.00 0.00 36.96 3.91
508 526 2.347114 CACGTCACCCCTGATGCA 59.653 61.111 0.00 0.00 36.96 3.96
509 527 1.742880 CACGTCACCCCTGATGCAG 60.743 63.158 0.00 0.00 36.96 4.41
510 528 2.217038 ACGTCACCCCTGATGCAGT 61.217 57.895 0.00 0.00 36.96 4.40
511 529 1.003355 CGTCACCCCTGATGCAGTT 60.003 57.895 0.00 0.00 0.00 3.16
512 530 0.249120 CGTCACCCCTGATGCAGTTA 59.751 55.000 0.00 0.00 0.00 2.24
513 531 1.134401 CGTCACCCCTGATGCAGTTAT 60.134 52.381 0.00 0.00 0.00 1.89
514 532 2.565841 GTCACCCCTGATGCAGTTATC 58.434 52.381 0.00 0.00 0.00 1.75
515 533 1.138859 TCACCCCTGATGCAGTTATCG 59.861 52.381 0.00 0.00 0.00 2.92
516 534 1.134401 CACCCCTGATGCAGTTATCGT 60.134 52.381 0.00 0.00 0.00 3.73
517 535 1.139058 ACCCCTGATGCAGTTATCGTC 59.861 52.381 0.00 0.00 0.00 4.20
524 542 3.443681 TGATGCAGTTATCGTCTCTGTGA 59.556 43.478 0.00 0.00 0.00 3.58
534 552 9.307121 AGTTATCGTCTCTGTGAAAATAGAATG 57.693 33.333 0.00 0.00 0.00 2.67
536 554 7.763172 ATCGTCTCTGTGAAAATAGAATGAC 57.237 36.000 0.00 0.00 0.00 3.06
546 567 8.539544 TGTGAAAATAGAATGACATGAGGTAGA 58.460 33.333 0.00 0.00 0.00 2.59
554 575 3.930336 TGACATGAGGTAGAAAGTGCAG 58.070 45.455 0.00 0.00 0.00 4.41
580 604 2.550855 GGTTCATCAGAGTCAGGCACAA 60.551 50.000 0.00 0.00 0.00 3.33
598 622 4.024893 GCACAAGAAGATCTTTTCACGTCA 60.025 41.667 9.87 0.00 33.78 4.35
599 623 5.504010 GCACAAGAAGATCTTTTCACGTCAA 60.504 40.000 9.87 0.00 33.78 3.18
601 625 4.999751 AGAAGATCTTTTCACGTCAAGC 57.000 40.909 9.87 0.00 0.00 4.01
602 626 4.380531 AGAAGATCTTTTCACGTCAAGCA 58.619 39.130 9.87 0.00 0.00 3.91
604 628 5.296780 AGAAGATCTTTTCACGTCAAGCAAA 59.703 36.000 9.87 0.00 0.00 3.68
605 629 5.499139 AGATCTTTTCACGTCAAGCAAAA 57.501 34.783 0.00 0.00 0.00 2.44
606 630 5.514279 AGATCTTTTCACGTCAAGCAAAAG 58.486 37.500 0.00 0.00 37.24 2.27
607 631 3.434637 TCTTTTCACGTCAAGCAAAAGC 58.565 40.909 0.00 0.00 36.29 3.51
608 632 2.929531 TTTCACGTCAAGCAAAAGCA 57.070 40.000 0.00 0.00 0.00 3.91
609 633 2.473530 TTCACGTCAAGCAAAAGCAG 57.526 45.000 0.00 0.00 0.00 4.24
610 634 0.029300 TCACGTCAAGCAAAAGCAGC 59.971 50.000 0.00 0.00 0.00 5.25
611 635 0.936297 CACGTCAAGCAAAAGCAGCC 60.936 55.000 0.00 0.00 0.00 4.85
612 636 1.359833 CGTCAAGCAAAAGCAGCCA 59.640 52.632 0.00 0.00 0.00 4.75
613 637 0.662374 CGTCAAGCAAAAGCAGCCAG 60.662 55.000 0.00 0.00 0.00 4.85
614 638 0.942884 GTCAAGCAAAAGCAGCCAGC 60.943 55.000 0.00 0.00 46.19 4.85
623 647 3.773370 GCAGCCAGCATATGCCAT 58.227 55.556 23.96 3.60 44.79 4.40
624 648 2.951269 GCAGCCAGCATATGCCATA 58.049 52.632 23.96 0.00 44.79 2.74
625 649 1.250328 GCAGCCAGCATATGCCATAA 58.750 50.000 23.96 0.00 44.79 1.90
626 650 1.068055 GCAGCCAGCATATGCCATAAC 60.068 52.381 23.96 9.57 44.79 1.89
627 651 1.542915 CAGCCAGCATATGCCATAACC 59.457 52.381 23.96 7.11 43.38 2.85
628 652 0.890683 GCCAGCATATGCCATAACCC 59.109 55.000 23.96 2.57 43.38 4.11
785 811 1.142667 TGTCCCTCACACAAGCATCAA 59.857 47.619 0.00 0.00 0.00 2.57
789 815 2.605338 CCCTCACACAAGCATCAAAACG 60.605 50.000 0.00 0.00 0.00 3.60
799 829 2.884639 AGCATCAAAACGTGGCTTTACT 59.115 40.909 0.00 0.00 0.00 2.24
803 833 2.032799 TCAAAACGTGGCTTTACTGCAG 59.967 45.455 13.48 13.48 34.04 4.41
804 834 0.951558 AAACGTGGCTTTACTGCAGG 59.048 50.000 19.93 0.31 34.04 4.85
824 854 0.239347 GTGTAACAAGGCTGCTGCTG 59.761 55.000 15.64 9.24 36.57 4.41
848 886 1.375140 GCTGCAGTGCTAGCTGTGA 60.375 57.895 23.72 0.00 38.65 3.58
850 888 1.735386 CTGCAGTGCTAGCTGTGAAT 58.265 50.000 17.60 0.00 38.65 2.57
851 889 1.397343 CTGCAGTGCTAGCTGTGAATG 59.603 52.381 17.60 6.06 38.65 2.67
854 892 2.277969 CAGTGCTAGCTGTGAATGGAG 58.722 52.381 17.23 0.00 0.00 3.86
859 897 1.556911 CTAGCTGTGAATGGAGTGGGT 59.443 52.381 0.00 0.00 0.00 4.51
874 912 4.573607 GGAGTGGGTCGAATTAACCATTAC 59.426 45.833 10.74 7.05 38.62 1.89
883 921 8.179615 GGTCGAATTAACCATTACTTTTAGTGG 58.820 37.037 4.90 0.00 40.27 4.00
886 924 9.769093 CGAATTAACCATTACTTTTAGTGGAAG 57.231 33.333 0.60 0.00 37.28 3.46
890 928 9.856162 TTAACCATTACTTTTAGTGGAAGAGTT 57.144 29.630 0.60 0.00 37.28 3.01
892 930 9.856162 AACCATTACTTTTAGTGGAAGAGTTAA 57.144 29.630 0.60 0.00 37.28 2.01
893 931 9.281371 ACCATTACTTTTAGTGGAAGAGTTAAC 57.719 33.333 0.00 0.00 37.28 2.01
894 932 9.280174 CCATTACTTTTAGTGGAAGAGTTAACA 57.720 33.333 8.61 0.00 37.28 2.41
906 950 3.791320 AGAGTTAACACCATGGAGAGGA 58.209 45.455 21.47 0.00 0.00 3.71
907 951 4.366267 AGAGTTAACACCATGGAGAGGAT 58.634 43.478 21.47 2.92 0.00 3.24
908 952 4.407296 AGAGTTAACACCATGGAGAGGATC 59.593 45.833 21.47 7.98 0.00 3.36
909 953 3.133003 AGTTAACACCATGGAGAGGATCG 59.867 47.826 21.47 0.00 42.67 3.69
910 954 0.179000 AACACCATGGAGAGGATCGC 59.821 55.000 21.47 0.00 42.67 4.58
941 988 1.885790 GCTCAAGCTTTCAGCCTTCCT 60.886 52.381 14.09 0.00 43.77 3.36
980 1027 5.992829 CACAATGCCCAAAATATGCATGTAT 59.007 36.000 10.16 0.82 44.49 2.29
981 1028 5.992829 ACAATGCCCAAAATATGCATGTATG 59.007 36.000 10.16 5.85 44.49 2.39
982 1029 5.811796 ATGCCCAAAATATGCATGTATGT 57.188 34.783 10.16 0.00 43.66 2.29
983 1030 6.914654 ATGCCCAAAATATGCATGTATGTA 57.085 33.333 10.16 0.00 43.66 2.29
1024 1071 0.884259 CAGGTGCGTGTCCATGAACA 60.884 55.000 0.00 0.00 0.00 3.18
1077 1124 4.087892 GGCGCTCTTCCTGAGGCA 62.088 66.667 7.64 0.00 42.87 4.75
1275 1322 1.864862 CTTCCAGCTGCACGAGTTG 59.135 57.895 8.66 0.00 32.78 3.16
1377 1424 2.021068 ATGGCGACGGACTCATCAGG 62.021 60.000 0.00 0.00 0.00 3.86
1395 1442 3.015293 GCATCACACACCGAGCACG 62.015 63.158 0.00 0.00 39.43 5.34
1398 1445 3.705638 CACACACCGAGCACGCAG 61.706 66.667 0.00 0.00 38.29 5.18
1424 1475 0.037697 CACCCCGACTCACGATGAAA 60.038 55.000 0.00 0.00 45.77 2.69
1930 1997 7.144722 TCAAGAGGCTAAAACATAATGTGTG 57.855 36.000 0.00 0.00 41.14 3.82
1933 2000 5.059404 AGGCTAAAACATAATGTGTGTGC 57.941 39.130 0.00 0.00 41.14 4.57
1952 2019 0.179127 CGTCTGATGGCGAGTGATGT 60.179 55.000 0.00 0.00 0.00 3.06
1974 2041 9.463443 GATGTTTTATCTTTGCAAAAGTGTACT 57.537 29.630 13.84 0.00 0.00 2.73
1975 2042 8.850454 TGTTTTATCTTTGCAAAAGTGTACTC 57.150 30.769 13.84 2.07 0.00 2.59
1976 2043 7.918562 TGTTTTATCTTTGCAAAAGTGTACTCC 59.081 33.333 13.84 0.00 0.00 3.85
1977 2044 6.569179 TTATCTTTGCAAAAGTGTACTCCC 57.431 37.500 13.84 0.00 0.00 4.30
1978 2045 4.164843 TCTTTGCAAAAGTGTACTCCCT 57.835 40.909 13.84 0.00 0.00 4.20
1979 2046 4.134563 TCTTTGCAAAAGTGTACTCCCTC 58.865 43.478 13.84 0.00 0.00 4.30
1980 2047 3.857157 TTGCAAAAGTGTACTCCCTCT 57.143 42.857 0.00 0.00 0.00 3.69
1981 2048 4.967084 TTGCAAAAGTGTACTCCCTCTA 57.033 40.909 0.00 0.00 0.00 2.43
1982 2049 5.499004 TTGCAAAAGTGTACTCCCTCTAT 57.501 39.130 0.00 0.00 0.00 1.98
1983 2050 5.086104 TGCAAAAGTGTACTCCCTCTATC 57.914 43.478 0.00 0.00 0.00 2.08
1984 2051 4.081087 TGCAAAAGTGTACTCCCTCTATCC 60.081 45.833 0.00 0.00 0.00 2.59
1985 2052 4.683671 GCAAAAGTGTACTCCCTCTATCCC 60.684 50.000 0.00 0.00 0.00 3.85
1986 2053 2.660670 AGTGTACTCCCTCTATCCCG 57.339 55.000 0.00 0.00 0.00 5.14
1987 2054 1.851653 AGTGTACTCCCTCTATCCCGT 59.148 52.381 0.00 0.00 0.00 5.28
1988 2055 1.955080 GTGTACTCCCTCTATCCCGTG 59.045 57.143 0.00 0.00 0.00 4.94
1989 2056 1.848388 TGTACTCCCTCTATCCCGTGA 59.152 52.381 0.00 0.00 0.00 4.35
1990 2057 2.445905 TGTACTCCCTCTATCCCGTGAT 59.554 50.000 0.00 0.00 34.87 3.06
1991 2058 3.654321 TGTACTCCCTCTATCCCGTGATA 59.346 47.826 0.00 0.00 32.18 2.15
1992 2059 4.291513 TGTACTCCCTCTATCCCGTGATAT 59.708 45.833 0.00 0.00 33.08 1.63
1993 2060 5.489997 TGTACTCCCTCTATCCCGTGATATA 59.510 44.000 0.00 0.00 33.08 0.86
1994 2061 5.531753 ACTCCCTCTATCCCGTGATATAA 57.468 43.478 0.00 0.00 33.08 0.98
1995 2062 5.511363 ACTCCCTCTATCCCGTGATATAAG 58.489 45.833 0.00 0.00 33.08 1.73
1996 2063 5.253330 ACTCCCTCTATCCCGTGATATAAGA 59.747 44.000 0.00 0.00 33.08 2.10
1997 2064 6.148735 TCCCTCTATCCCGTGATATAAGAA 57.851 41.667 0.00 0.00 33.08 2.52
1998 2065 5.950549 TCCCTCTATCCCGTGATATAAGAAC 59.049 44.000 0.00 0.00 33.08 3.01
1999 2066 5.163642 CCCTCTATCCCGTGATATAAGAACG 60.164 48.000 0.00 0.00 33.08 3.95
2000 2067 5.415077 CCTCTATCCCGTGATATAAGAACGT 59.585 44.000 0.00 0.00 35.59 3.99
2001 2068 6.072064 CCTCTATCCCGTGATATAAGAACGTT 60.072 42.308 0.00 0.00 35.59 3.99
2002 2069 7.281040 TCTATCCCGTGATATAAGAACGTTT 57.719 36.000 0.46 0.00 35.59 3.60
2003 2070 7.719483 TCTATCCCGTGATATAAGAACGTTTT 58.281 34.615 0.46 0.00 35.59 2.43
2004 2071 8.199449 TCTATCCCGTGATATAAGAACGTTTTT 58.801 33.333 9.22 9.22 35.59 1.94
2005 2072 6.411630 TCCCGTGATATAAGAACGTTTTTG 57.588 37.500 13.87 0.00 35.59 2.44
2006 2073 6.164876 TCCCGTGATATAAGAACGTTTTTGA 58.835 36.000 13.87 2.81 35.59 2.69
2007 2074 6.091169 TCCCGTGATATAAGAACGTTTTTGAC 59.909 38.462 13.87 0.00 35.59 3.18
2008 2075 6.128499 CCCGTGATATAAGAACGTTTTTGACA 60.128 38.462 13.87 6.15 35.59 3.58
2009 2076 6.735063 CCGTGATATAAGAACGTTTTTGACAC 59.265 38.462 13.87 14.64 35.59 3.67
2010 2077 7.359765 CCGTGATATAAGAACGTTTTTGACACT 60.360 37.037 13.87 0.00 35.59 3.55
2011 2078 8.641155 CGTGATATAAGAACGTTTTTGACACTA 58.359 33.333 13.87 0.00 32.79 2.74
2012 2079 9.953825 GTGATATAAGAACGTTTTTGACACTAG 57.046 33.333 13.87 0.00 0.00 2.57
2013 2080 9.701098 TGATATAAGAACGTTTTTGACACTAGT 57.299 29.630 13.87 0.00 0.00 2.57
2014 2081 9.953825 GATATAAGAACGTTTTTGACACTAGTG 57.046 33.333 21.44 21.44 0.00 2.74
2016 2083 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
2017 2084 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
2018 2085 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
2031 2098 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
2032 2099 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
2033 2100 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
2034 2101 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
2035 2102 6.997222 AGTGTAGTGTCAAAAACGTTCTTAC 58.003 36.000 0.00 0.00 0.00 2.34
2036 2103 6.591062 AGTGTAGTGTCAAAAACGTTCTTACA 59.409 34.615 0.00 1.33 0.00 2.41
2037 2104 7.279313 AGTGTAGTGTCAAAAACGTTCTTACAT 59.721 33.333 0.00 0.00 0.00 2.29
2038 2105 7.906527 GTGTAGTGTCAAAAACGTTCTTACATT 59.093 33.333 0.00 4.02 0.00 2.71
2039 2106 9.096160 TGTAGTGTCAAAAACGTTCTTACATTA 57.904 29.630 0.00 3.08 0.00 1.90
2042 2109 8.073768 AGTGTCAAAAACGTTCTTACATTATGG 58.926 33.333 0.00 0.00 0.00 2.74
2043 2110 7.325097 GTGTCAAAAACGTTCTTACATTATGGG 59.675 37.037 0.00 0.00 0.00 4.00
2044 2111 7.228906 TGTCAAAAACGTTCTTACATTATGGGA 59.771 33.333 0.00 0.00 0.00 4.37
2045 2112 7.536281 GTCAAAAACGTTCTTACATTATGGGAC 59.464 37.037 0.00 0.00 0.00 4.46
2177 2246 9.976511 AAGATTGAATGGATACTAAATTGCATG 57.023 29.630 0.00 0.00 37.61 4.06
2283 4295 0.395862 TTTTGGCCCTGTTCGGTTGA 60.396 50.000 0.00 0.00 0.00 3.18
2310 4322 4.040584 GGATAAGTCTACCACAATCCCCTC 59.959 50.000 0.00 0.00 35.29 4.30
2335 4347 2.481890 CCTTGGGAGGGGGTGTAAA 58.518 57.895 0.00 0.00 39.55 2.01
2349 4361 1.951602 GTGTAAACCGAACAAGGCCTT 59.048 47.619 13.78 13.78 33.69 4.35
2353 4365 2.002018 AACCGAACAAGGCCTTGGGA 62.002 55.000 41.04 0.00 44.45 4.37
2469 4481 8.906867 TCTTTTTGAATCAAATAGGCCTCTATG 58.093 33.333 20.45 6.92 36.40 2.23
2476 4488 8.697507 AATCAAATAGGCCTCTATGTAAAAGG 57.302 34.615 9.68 0.00 36.40 3.11
2526 4538 1.303309 CATGATGGTTTCTCCGGCTC 58.697 55.000 0.00 0.00 39.52 4.70
2531 4543 1.074248 GGTTTCTCCGGCTCCCAAA 59.926 57.895 0.00 0.00 0.00 3.28
2548 4560 3.087031 CCAAAGAGCATGTGATTCCAGT 58.913 45.455 0.00 0.00 0.00 4.00
2584 4596 1.542915 ACCAACTGAACATGATGCAGC 59.457 47.619 0.00 0.00 33.03 5.25
2780 4841 8.927675 AATAGGTACAGTAAAACAACATCCAA 57.072 30.769 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.625790 CCCGACAAATTCCTCACCAAAA 59.374 45.455 0.00 0.00 0.00 2.44
1 2 2.235016 CCCGACAAATTCCTCACCAAA 58.765 47.619 0.00 0.00 0.00 3.28
2 3 1.904287 CCCGACAAATTCCTCACCAA 58.096 50.000 0.00 0.00 0.00 3.67
3 4 0.608035 GCCCGACAAATTCCTCACCA 60.608 55.000 0.00 0.00 0.00 4.17
4 5 1.313091 GGCCCGACAAATTCCTCACC 61.313 60.000 0.00 0.00 0.00 4.02
5 6 0.608035 TGGCCCGACAAATTCCTCAC 60.608 55.000 0.00 0.00 0.00 3.51
6 7 0.111446 TTGGCCCGACAAATTCCTCA 59.889 50.000 0.00 0.00 0.00 3.86
7 8 1.253100 TTTGGCCCGACAAATTCCTC 58.747 50.000 0.00 0.00 35.57 3.71
8 9 1.618343 CTTTTGGCCCGACAAATTCCT 59.382 47.619 0.00 0.00 39.80 3.36
9 10 1.343142 ACTTTTGGCCCGACAAATTCC 59.657 47.619 0.00 0.00 39.80 3.01
10 11 2.223947 ACACTTTTGGCCCGACAAATTC 60.224 45.455 0.00 0.00 39.80 2.17
11 12 1.760029 ACACTTTTGGCCCGACAAATT 59.240 42.857 0.00 0.00 39.80 1.82
12 13 1.408969 ACACTTTTGGCCCGACAAAT 58.591 45.000 0.00 0.00 39.80 2.32
13 14 1.677052 GTACACTTTTGGCCCGACAAA 59.323 47.619 0.00 0.00 38.48 2.83
14 15 1.134037 AGTACACTTTTGGCCCGACAA 60.134 47.619 0.00 0.00 0.00 3.18
15 16 0.470766 AGTACACTTTTGGCCCGACA 59.529 50.000 0.00 0.00 0.00 4.35
16 17 1.154197 GAGTACACTTTTGGCCCGAC 58.846 55.000 0.00 0.00 0.00 4.79
17 18 0.035739 GGAGTACACTTTTGGCCCGA 59.964 55.000 0.00 0.00 0.00 5.14
18 19 0.958876 GGGAGTACACTTTTGGCCCG 60.959 60.000 0.00 0.00 0.00 6.13
19 20 0.404426 AGGGAGTACACTTTTGGCCC 59.596 55.000 0.00 0.00 0.00 5.80
20 21 1.613520 GGAGGGAGTACACTTTTGGCC 60.614 57.143 0.00 0.00 0.00 5.36
21 22 1.351350 AGGAGGGAGTACACTTTTGGC 59.649 52.381 0.00 0.00 0.00 4.52
22 23 3.559384 GGAAGGAGGGAGTACACTTTTGG 60.559 52.174 0.00 0.00 0.00 3.28
23 24 3.072476 TGGAAGGAGGGAGTACACTTTTG 59.928 47.826 0.00 0.00 0.00 2.44
24 25 3.323775 TGGAAGGAGGGAGTACACTTTT 58.676 45.455 0.00 0.00 0.00 2.27
25 26 2.986050 TGGAAGGAGGGAGTACACTTT 58.014 47.619 0.00 0.00 0.00 2.66
26 27 2.715763 TGGAAGGAGGGAGTACACTT 57.284 50.000 0.00 0.00 0.00 3.16
27 28 2.950990 ATGGAAGGAGGGAGTACACT 57.049 50.000 0.00 0.00 0.00 3.55
28 29 9.884814 ATATATATATGGAAGGAGGGAGTACAC 57.115 37.037 4.37 0.00 0.00 2.90
32 33 8.692811 CCCTATATATATATGGAAGGAGGGAGT 58.307 40.741 21.86 0.00 32.45 3.85
33 34 7.621683 GCCCTATATATATATGGAAGGAGGGAG 59.378 44.444 26.80 10.61 32.45 4.30
34 35 7.480779 GGCCCTATATATATATGGAAGGAGGGA 60.481 44.444 26.80 3.41 32.45 4.20
35 36 6.674419 GGCCCTATATATATATGGAAGGAGGG 59.326 46.154 21.96 21.96 0.00 4.30
36 37 7.491681 AGGCCCTATATATATATGGAAGGAGG 58.508 42.308 21.83 12.92 0.00 4.30
37 38 8.180165 TGAGGCCCTATATATATATGGAAGGAG 58.820 40.741 21.83 10.53 0.00 3.69
38 39 8.080658 TGAGGCCCTATATATATATGGAAGGA 57.919 38.462 21.83 5.65 0.00 3.36
39 40 8.766476 CATGAGGCCCTATATATATATGGAAGG 58.234 40.741 21.83 13.20 0.00 3.46
40 41 8.263640 GCATGAGGCCCTATATATATATGGAAG 58.736 40.741 21.83 8.90 36.11 3.46
41 42 7.093333 CGCATGAGGCCCTATATATATATGGAA 60.093 40.741 21.83 8.85 40.31 3.53
42 43 6.381133 CGCATGAGGCCCTATATATATATGGA 59.619 42.308 21.83 6.86 40.31 3.41
43 44 6.155221 ACGCATGAGGCCCTATATATATATGG 59.845 42.308 16.04 16.04 40.31 2.74
44 45 7.175347 ACGCATGAGGCCCTATATATATATG 57.825 40.000 14.42 1.03 40.31 1.78
45 46 6.381420 GGACGCATGAGGCCCTATATATATAT 59.619 42.308 10.85 10.10 40.31 0.86
46 47 5.715279 GGACGCATGAGGCCCTATATATATA 59.285 44.000 10.85 2.49 40.31 0.86
47 48 4.528596 GGACGCATGAGGCCCTATATATAT 59.471 45.833 10.85 0.00 40.31 0.86
48 49 3.895656 GGACGCATGAGGCCCTATATATA 59.104 47.826 10.85 0.00 40.31 0.86
49 50 2.700897 GGACGCATGAGGCCCTATATAT 59.299 50.000 10.85 0.00 40.31 0.86
50 51 2.108168 GGACGCATGAGGCCCTATATA 58.892 52.381 10.85 0.00 40.31 0.86
51 52 0.905357 GGACGCATGAGGCCCTATAT 59.095 55.000 10.85 0.00 40.31 0.86
52 53 0.178932 AGGACGCATGAGGCCCTATA 60.179 55.000 18.95 0.00 40.31 1.31
53 54 1.056700 AAGGACGCATGAGGCCCTAT 61.057 55.000 18.95 1.45 40.31 2.57
54 55 1.271840 AAAGGACGCATGAGGCCCTA 61.272 55.000 18.95 0.00 40.31 3.53
55 56 2.606587 AAAGGACGCATGAGGCCCT 61.607 57.895 18.95 11.99 40.31 5.19
56 57 2.044946 AAAGGACGCATGAGGCCC 60.045 61.111 18.95 9.77 40.31 5.80
57 58 0.749454 ATCAAAGGACGCATGAGGCC 60.749 55.000 14.51 14.51 40.31 5.19
58 59 0.659957 GATCAAAGGACGCATGAGGC 59.340 55.000 0.00 0.00 39.90 4.70
59 60 2.028420 TGATCAAAGGACGCATGAGG 57.972 50.000 0.00 0.00 0.00 3.86
60 61 3.624410 TCATTGATCAAAGGACGCATGAG 59.376 43.478 13.09 0.00 0.00 2.90
61 62 3.608796 TCATTGATCAAAGGACGCATGA 58.391 40.909 13.09 6.13 0.00 3.07
62 63 4.563337 ATCATTGATCAAAGGACGCATG 57.437 40.909 13.09 3.66 29.94 4.06
63 64 6.698008 TTTATCATTGATCAAAGGACGCAT 57.302 33.333 13.09 0.00 29.94 4.73
64 65 6.507958 TTTTATCATTGATCAAAGGACGCA 57.492 33.333 13.09 0.62 29.94 5.24
65 66 7.992180 AATTTTATCATTGATCAAAGGACGC 57.008 32.000 13.09 0.00 29.94 5.19
123 124 9.653287 TCGTATGTGAAAGAAGTTTCTAATGAT 57.347 29.630 0.00 0.00 42.39 2.45
124 125 9.653287 ATCGTATGTGAAAGAAGTTTCTAATGA 57.347 29.630 0.00 0.00 42.39 2.57
128 129 9.483916 TGAAATCGTATGTGAAAGAAGTTTCTA 57.516 29.630 0.00 0.00 42.39 2.10
129 130 8.378172 TGAAATCGTATGTGAAAGAAGTTTCT 57.622 30.769 0.01 0.00 42.39 2.52
130 131 9.612620 ATTGAAATCGTATGTGAAAGAAGTTTC 57.387 29.630 0.00 0.00 42.27 2.78
131 132 9.398170 CATTGAAATCGTATGTGAAAGAAGTTT 57.602 29.630 0.00 0.00 0.00 2.66
132 133 8.023128 CCATTGAAATCGTATGTGAAAGAAGTT 58.977 33.333 0.00 0.00 0.00 2.66
133 134 7.174946 ACCATTGAAATCGTATGTGAAAGAAGT 59.825 33.333 0.00 0.00 0.00 3.01
134 135 7.530010 ACCATTGAAATCGTATGTGAAAGAAG 58.470 34.615 0.00 0.00 0.00 2.85
135 136 7.447374 ACCATTGAAATCGTATGTGAAAGAA 57.553 32.000 0.00 0.00 0.00 2.52
136 137 8.611757 CATACCATTGAAATCGTATGTGAAAGA 58.388 33.333 10.77 0.00 36.41 2.52
137 138 7.376866 GCATACCATTGAAATCGTATGTGAAAG 59.623 37.037 16.86 0.00 40.41 2.62
138 139 7.066887 AGCATACCATTGAAATCGTATGTGAAA 59.933 33.333 16.86 0.00 40.41 2.69
139 140 6.542005 AGCATACCATTGAAATCGTATGTGAA 59.458 34.615 16.86 0.00 40.41 3.18
140 141 6.054941 AGCATACCATTGAAATCGTATGTGA 58.945 36.000 16.86 0.00 40.41 3.58
141 142 6.304356 AGCATACCATTGAAATCGTATGTG 57.696 37.500 16.86 1.80 40.41 3.21
142 143 6.942532 AAGCATACCATTGAAATCGTATGT 57.057 33.333 16.86 6.45 40.41 2.29
143 144 9.333497 CATAAAGCATACCATTGAAATCGTATG 57.667 33.333 13.36 13.36 40.89 2.39
144 145 9.066892 ACATAAAGCATACCATTGAAATCGTAT 57.933 29.630 0.00 0.00 0.00 3.06
145 146 8.445275 ACATAAAGCATACCATTGAAATCGTA 57.555 30.769 0.00 0.00 0.00 3.43
146 147 7.333528 ACATAAAGCATACCATTGAAATCGT 57.666 32.000 0.00 0.00 0.00 3.73
147 148 9.169468 GTTACATAAAGCATACCATTGAAATCG 57.831 33.333 0.00 0.00 0.00 3.34
150 151 9.800433 CATGTTACATAAAGCATACCATTGAAA 57.200 29.630 0.00 0.00 0.00 2.69
151 152 7.920151 GCATGTTACATAAAGCATACCATTGAA 59.080 33.333 0.00 0.00 0.00 2.69
152 153 7.067981 TGCATGTTACATAAAGCATACCATTGA 59.932 33.333 4.98 0.00 0.00 2.57
153 154 7.201835 TGCATGTTACATAAAGCATACCATTG 58.798 34.615 4.98 0.00 0.00 2.82
154 155 7.345422 TGCATGTTACATAAAGCATACCATT 57.655 32.000 4.98 0.00 0.00 3.16
155 156 6.957920 TGCATGTTACATAAAGCATACCAT 57.042 33.333 4.98 0.00 0.00 3.55
156 157 6.320926 ACATGCATGTTACATAAAGCATACCA 59.679 34.615 26.61 0.00 40.38 3.25
157 158 6.738114 ACATGCATGTTACATAAAGCATACC 58.262 36.000 26.61 0.00 40.38 2.73
158 159 7.416817 TGACATGCATGTTACATAAAGCATAC 58.583 34.615 31.82 14.80 41.95 2.39
159 160 7.565323 TGACATGCATGTTACATAAAGCATA 57.435 32.000 31.82 4.40 41.95 3.14
160 161 6.453926 TGACATGCATGTTACATAAAGCAT 57.546 33.333 31.82 13.54 41.95 3.79
161 162 5.893897 TGACATGCATGTTACATAAAGCA 57.106 34.783 31.82 18.86 41.95 3.91
167 168 8.823818 CGATGATATATGACATGCATGTTACAT 58.176 33.333 31.82 29.22 41.95 2.29
168 169 7.818930 ACGATGATATATGACATGCATGTTACA 59.181 33.333 31.82 25.34 41.95 2.41
169 170 8.112449 CACGATGATATATGACATGCATGTTAC 58.888 37.037 31.82 20.74 41.95 2.50
170 171 7.201548 GCACGATGATATATGACATGCATGTTA 60.202 37.037 31.82 28.10 41.95 2.41
171 172 6.402875 GCACGATGATATATGACATGCATGTT 60.403 38.462 31.82 20.10 41.95 2.71
172 173 5.064325 GCACGATGATATATGACATGCATGT 59.936 40.000 31.82 31.82 45.16 3.21
173 174 5.293569 AGCACGATGATATATGACATGCATG 59.706 40.000 25.09 25.09 37.87 4.06
174 175 5.425630 AGCACGATGATATATGACATGCAT 58.574 37.500 0.00 0.00 41.08 3.96
175 176 4.824289 AGCACGATGATATATGACATGCA 58.176 39.130 0.00 0.00 0.00 3.96
176 177 6.237942 GGTTAGCACGATGATATATGACATGC 60.238 42.308 0.00 0.00 0.00 4.06
177 178 6.256539 GGGTTAGCACGATGATATATGACATG 59.743 42.308 0.00 0.00 0.00 3.21
178 179 6.341316 GGGTTAGCACGATGATATATGACAT 58.659 40.000 0.00 0.00 0.00 3.06
179 180 5.621329 CGGGTTAGCACGATGATATATGACA 60.621 44.000 0.00 0.00 45.97 3.58
180 181 4.798907 CGGGTTAGCACGATGATATATGAC 59.201 45.833 0.00 0.00 45.97 3.06
181 182 4.461431 ACGGGTTAGCACGATGATATATGA 59.539 41.667 8.67 0.00 45.97 2.15
182 183 4.562789 CACGGGTTAGCACGATGATATATG 59.437 45.833 8.67 0.00 45.97 1.78
183 184 4.461431 TCACGGGTTAGCACGATGATATAT 59.539 41.667 8.67 0.00 45.97 0.86
184 185 3.822167 TCACGGGTTAGCACGATGATATA 59.178 43.478 8.67 0.00 45.97 0.86
185 186 2.626266 TCACGGGTTAGCACGATGATAT 59.374 45.455 8.67 0.00 45.97 1.63
186 187 2.025898 TCACGGGTTAGCACGATGATA 58.974 47.619 8.67 0.00 45.97 2.15
187 188 0.821517 TCACGGGTTAGCACGATGAT 59.178 50.000 8.67 0.00 45.97 2.45
188 189 0.821517 ATCACGGGTTAGCACGATGA 59.178 50.000 8.67 8.51 45.97 2.92
189 190 1.209128 GATCACGGGTTAGCACGATG 58.791 55.000 8.67 2.82 45.97 3.84
190 191 0.821517 TGATCACGGGTTAGCACGAT 59.178 50.000 8.67 0.00 45.97 3.73
191 192 0.604073 TTGATCACGGGTTAGCACGA 59.396 50.000 8.67 0.00 45.97 4.35
193 194 2.695359 TCTTTGATCACGGGTTAGCAC 58.305 47.619 0.00 0.00 0.00 4.40
194 195 3.627395 ATCTTTGATCACGGGTTAGCA 57.373 42.857 0.00 0.00 0.00 3.49
195 196 4.272748 GGTTATCTTTGATCACGGGTTAGC 59.727 45.833 0.00 0.00 0.00 3.09
196 197 5.671493 AGGTTATCTTTGATCACGGGTTAG 58.329 41.667 0.00 0.00 0.00 2.34
197 198 5.687166 AGGTTATCTTTGATCACGGGTTA 57.313 39.130 0.00 0.00 0.00 2.85
198 199 4.569719 AGGTTATCTTTGATCACGGGTT 57.430 40.909 0.00 0.00 0.00 4.11
199 200 4.261801 CAAGGTTATCTTTGATCACGGGT 58.738 43.478 0.00 0.00 33.34 5.28
200 201 4.261801 ACAAGGTTATCTTTGATCACGGG 58.738 43.478 0.00 0.00 35.17 5.28
201 202 6.978343 TTACAAGGTTATCTTTGATCACGG 57.022 37.500 0.00 0.00 35.17 4.94
202 203 9.490663 GATTTTACAAGGTTATCTTTGATCACG 57.509 33.333 0.00 0.00 35.17 4.35
203 204 9.490663 CGATTTTACAAGGTTATCTTTGATCAC 57.509 33.333 0.00 0.00 35.17 3.06
204 205 9.226606 ACGATTTTACAAGGTTATCTTTGATCA 57.773 29.630 2.93 0.00 35.17 2.92
211 212 9.269453 GCCTAATACGATTTTACAAGGTTATCT 57.731 33.333 0.00 0.00 0.00 1.98
212 213 8.501580 GGCCTAATACGATTTTACAAGGTTATC 58.498 37.037 0.00 0.00 0.00 1.75
213 214 7.446319 GGGCCTAATACGATTTTACAAGGTTAT 59.554 37.037 0.84 0.00 0.00 1.89
214 215 6.767423 GGGCCTAATACGATTTTACAAGGTTA 59.233 38.462 0.84 0.00 0.00 2.85
215 216 5.591472 GGGCCTAATACGATTTTACAAGGTT 59.409 40.000 0.84 0.00 0.00 3.50
216 217 5.104235 AGGGCCTAATACGATTTTACAAGGT 60.104 40.000 2.82 0.00 0.00 3.50
217 218 5.374071 AGGGCCTAATACGATTTTACAAGG 58.626 41.667 2.82 0.00 0.00 3.61
218 219 9.886132 ATATAGGGCCTAATACGATTTTACAAG 57.114 33.333 18.91 0.00 0.00 3.16
223 224 9.886132 CACTTATATAGGGCCTAATACGATTTT 57.114 33.333 18.91 0.00 0.00 1.82
224 225 8.483758 CCACTTATATAGGGCCTAATACGATTT 58.516 37.037 18.91 0.30 0.00 2.17
225 226 7.842743 TCCACTTATATAGGGCCTAATACGATT 59.157 37.037 18.91 1.12 0.00 3.34
226 227 7.359849 TCCACTTATATAGGGCCTAATACGAT 58.640 38.462 18.91 3.09 0.00 3.73
227 228 6.734532 TCCACTTATATAGGGCCTAATACGA 58.265 40.000 18.91 0.00 0.00 3.43
228 229 7.414222 TTCCACTTATATAGGGCCTAATACG 57.586 40.000 18.91 15.01 0.00 3.06
229 230 7.622479 TCCTTCCACTTATATAGGGCCTAATAC 59.378 40.741 18.91 0.00 0.00 1.89
230 231 7.725367 TCCTTCCACTTATATAGGGCCTAATA 58.275 38.462 18.91 13.23 0.00 0.98
231 232 6.581122 TCCTTCCACTTATATAGGGCCTAAT 58.419 40.000 18.91 14.19 0.00 1.73
232 233 5.984827 TCCTTCCACTTATATAGGGCCTAA 58.015 41.667 18.91 7.61 0.00 2.69
233 234 5.317803 TCTCCTTCCACTTATATAGGGCCTA 59.682 44.000 17.16 17.16 0.00 3.93
234 235 4.109765 TCTCCTTCCACTTATATAGGGCCT 59.890 45.833 12.58 12.58 0.00 5.19
235 236 4.426704 TCTCCTTCCACTTATATAGGGCC 58.573 47.826 0.00 0.00 0.00 5.80
236 237 5.334421 TCTCTCCTTCCACTTATATAGGGC 58.666 45.833 0.00 0.00 0.00 5.19
237 238 7.242359 TCTTCTCTCCTTCCACTTATATAGGG 58.758 42.308 0.00 0.00 0.00 3.53
238 239 8.748412 CATCTTCTCTCCTTCCACTTATATAGG 58.252 40.741 0.00 0.00 0.00 2.57
239 240 8.748412 CCATCTTCTCTCCTTCCACTTATATAG 58.252 40.741 0.00 0.00 0.00 1.31
240 241 8.235230 ACCATCTTCTCTCCTTCCACTTATATA 58.765 37.037 0.00 0.00 0.00 0.86
241 242 7.079048 ACCATCTTCTCTCCTTCCACTTATAT 58.921 38.462 0.00 0.00 0.00 0.86
242 243 6.444704 ACCATCTTCTCTCCTTCCACTTATA 58.555 40.000 0.00 0.00 0.00 0.98
243 244 5.284582 ACCATCTTCTCTCCTTCCACTTAT 58.715 41.667 0.00 0.00 0.00 1.73
244 245 4.689062 ACCATCTTCTCTCCTTCCACTTA 58.311 43.478 0.00 0.00 0.00 2.24
245 246 3.525862 ACCATCTTCTCTCCTTCCACTT 58.474 45.455 0.00 0.00 0.00 3.16
246 247 3.197927 ACCATCTTCTCTCCTTCCACT 57.802 47.619 0.00 0.00 0.00 4.00
247 248 3.990959 AACCATCTTCTCTCCTTCCAC 57.009 47.619 0.00 0.00 0.00 4.02
248 249 4.471386 CCTAAACCATCTTCTCTCCTTCCA 59.529 45.833 0.00 0.00 0.00 3.53
249 250 4.684757 GCCTAAACCATCTTCTCTCCTTCC 60.685 50.000 0.00 0.00 0.00 3.46
250 251 4.163268 AGCCTAAACCATCTTCTCTCCTTC 59.837 45.833 0.00 0.00 0.00 3.46
251 252 4.080638 CAGCCTAAACCATCTTCTCTCCTT 60.081 45.833 0.00 0.00 0.00 3.36
252 253 3.454082 CAGCCTAAACCATCTTCTCTCCT 59.546 47.826 0.00 0.00 0.00 3.69
253 254 3.432890 CCAGCCTAAACCATCTTCTCTCC 60.433 52.174 0.00 0.00 0.00 3.71
254 255 3.432890 CCCAGCCTAAACCATCTTCTCTC 60.433 52.174 0.00 0.00 0.00 3.20
255 256 2.507471 CCCAGCCTAAACCATCTTCTCT 59.493 50.000 0.00 0.00 0.00 3.10
256 257 2.924421 CCCAGCCTAAACCATCTTCTC 58.076 52.381 0.00 0.00 0.00 2.87
257 258 1.064389 GCCCAGCCTAAACCATCTTCT 60.064 52.381 0.00 0.00 0.00 2.85
258 259 1.340991 TGCCCAGCCTAAACCATCTTC 60.341 52.381 0.00 0.00 0.00 2.87
259 260 0.704076 TGCCCAGCCTAAACCATCTT 59.296 50.000 0.00 0.00 0.00 2.40
260 261 0.257039 CTGCCCAGCCTAAACCATCT 59.743 55.000 0.00 0.00 0.00 2.90
261 262 0.753111 CCTGCCCAGCCTAAACCATC 60.753 60.000 0.00 0.00 0.00 3.51
262 263 1.214305 TCCTGCCCAGCCTAAACCAT 61.214 55.000 0.00 0.00 0.00 3.55
263 264 1.214305 ATCCTGCCCAGCCTAAACCA 61.214 55.000 0.00 0.00 0.00 3.67
264 265 0.753111 CATCCTGCCCAGCCTAAACC 60.753 60.000 0.00 0.00 0.00 3.27
265 266 0.034089 ACATCCTGCCCAGCCTAAAC 60.034 55.000 0.00 0.00 0.00 2.01
266 267 0.034186 CACATCCTGCCCAGCCTAAA 60.034 55.000 0.00 0.00 0.00 1.85
267 268 1.609239 CACATCCTGCCCAGCCTAA 59.391 57.895 0.00 0.00 0.00 2.69
272 273 0.609957 TTTCTGCACATCCTGCCCAG 60.610 55.000 0.00 0.00 46.51 4.45
281 282 4.160439 TCCGTCTATCTTCTTTCTGCACAT 59.840 41.667 0.00 0.00 0.00 3.21
283 284 4.111375 TCCGTCTATCTTCTTTCTGCAC 57.889 45.455 0.00 0.00 0.00 4.57
284 285 4.801330 TTCCGTCTATCTTCTTTCTGCA 57.199 40.909 0.00 0.00 0.00 4.41
285 286 6.670077 AATTTCCGTCTATCTTCTTTCTGC 57.330 37.500 0.00 0.00 0.00 4.26
338 343 4.476862 TGATCTTCTGATAATACTCGCGC 58.523 43.478 0.00 0.00 32.19 6.86
340 345 6.318628 ACGATGATCTTCTGATAATACTCGC 58.681 40.000 6.99 0.00 32.19 5.03
341 346 8.735303 AAACGATGATCTTCTGATAATACTCG 57.265 34.615 6.99 0.00 32.19 4.18
352 357 5.721232 ACGGAAACTAAACGATGATCTTCT 58.279 37.500 6.99 0.00 0.00 2.85
355 360 5.721232 AGAACGGAAACTAAACGATGATCT 58.279 37.500 0.00 0.00 0.00 2.75
356 361 5.575606 TGAGAACGGAAACTAAACGATGATC 59.424 40.000 0.00 0.00 0.00 2.92
358 363 4.873817 TGAGAACGGAAACTAAACGATGA 58.126 39.130 0.00 0.00 0.00 2.92
363 368 5.379827 CGGAAATGAGAACGGAAACTAAAC 58.620 41.667 0.00 0.00 0.00 2.01
364 369 5.600908 CGGAAATGAGAACGGAAACTAAA 57.399 39.130 0.00 0.00 0.00 1.85
373 378 1.463528 GCGAAACCGGAAATGAGAACG 60.464 52.381 9.46 1.70 0.00 3.95
420 438 7.936584 TGTTTCACTAAGATCCAAACGAAAAT 58.063 30.769 0.00 0.00 30.92 1.82
421 439 7.323049 TGTTTCACTAAGATCCAAACGAAAA 57.677 32.000 0.00 0.00 30.92 2.29
424 442 6.928979 TTTGTTTCACTAAGATCCAAACGA 57.071 33.333 0.00 0.00 30.92 3.85
430 448 7.696992 TGGGTATTTTGTTTCACTAAGATCC 57.303 36.000 0.00 0.00 0.00 3.36
431 449 8.573035 TGTTGGGTATTTTGTTTCACTAAGATC 58.427 33.333 0.00 0.00 0.00 2.75
433 451 7.883391 TGTTGGGTATTTTGTTTCACTAAGA 57.117 32.000 0.00 0.00 0.00 2.10
434 452 8.934507 TTTGTTGGGTATTTTGTTTCACTAAG 57.065 30.769 0.00 0.00 0.00 2.18
470 488 6.938030 ACGTGGTGAAGTTTGGATATTTTCTA 59.062 34.615 0.00 0.00 0.00 2.10
475 493 4.454504 GTGACGTGGTGAAGTTTGGATATT 59.545 41.667 0.00 0.00 0.00 1.28
481 499 0.661020 GGGTGACGTGGTGAAGTTTG 59.339 55.000 0.00 0.00 0.00 2.93
484 502 1.764854 AGGGGTGACGTGGTGAAGT 60.765 57.895 0.00 0.00 0.00 3.01
485 503 1.301716 CAGGGGTGACGTGGTGAAG 60.302 63.158 0.00 0.00 0.00 3.02
487 505 1.535444 ATCAGGGGTGACGTGGTGA 60.535 57.895 0.00 0.00 35.71 4.02
488 506 1.375908 CATCAGGGGTGACGTGGTG 60.376 63.158 0.00 0.00 39.43 4.17
489 507 3.068881 CATCAGGGGTGACGTGGT 58.931 61.111 0.00 0.00 35.71 4.16
490 508 2.436646 GCATCAGGGGTGACGTGG 60.437 66.667 0.00 0.00 35.71 4.94
491 509 1.742880 CTGCATCAGGGGTGACGTG 60.743 63.158 0.00 0.00 36.32 4.49
492 510 1.768684 AACTGCATCAGGGGTGACGT 61.769 55.000 0.00 0.00 35.51 4.34
493 511 0.249120 TAACTGCATCAGGGGTGACG 59.751 55.000 0.00 0.00 35.51 4.35
494 512 2.565841 GATAACTGCATCAGGGGTGAC 58.434 52.381 0.00 0.00 35.51 3.67
495 513 1.138859 CGATAACTGCATCAGGGGTGA 59.861 52.381 0.00 0.00 35.51 4.02
496 514 1.134401 ACGATAACTGCATCAGGGGTG 60.134 52.381 0.00 0.00 35.51 4.61
497 515 1.139058 GACGATAACTGCATCAGGGGT 59.861 52.381 0.00 0.00 35.51 4.95
498 516 1.414181 AGACGATAACTGCATCAGGGG 59.586 52.381 0.00 0.00 35.51 4.79
499 517 2.363680 AGAGACGATAACTGCATCAGGG 59.636 50.000 0.00 0.00 35.51 4.45
500 518 3.181482 ACAGAGACGATAACTGCATCAGG 60.181 47.826 0.00 0.00 35.51 3.86
501 519 3.795639 CACAGAGACGATAACTGCATCAG 59.204 47.826 0.00 0.00 37.52 2.90
502 520 3.443681 TCACAGAGACGATAACTGCATCA 59.556 43.478 0.00 0.00 35.38 3.07
503 521 4.033990 TCACAGAGACGATAACTGCATC 57.966 45.455 0.00 0.00 35.38 3.91
504 522 4.456280 TTCACAGAGACGATAACTGCAT 57.544 40.909 0.00 0.00 35.38 3.96
505 523 3.934457 TTCACAGAGACGATAACTGCA 57.066 42.857 0.00 0.00 35.38 4.41
506 524 5.786401 ATTTTCACAGAGACGATAACTGC 57.214 39.130 0.00 0.00 35.38 4.40
507 525 8.689251 TTCTATTTTCACAGAGACGATAACTG 57.311 34.615 0.00 0.00 37.62 3.16
508 526 9.307121 CATTCTATTTTCACAGAGACGATAACT 57.693 33.333 0.00 0.00 0.00 2.24
509 527 9.302345 TCATTCTATTTTCACAGAGACGATAAC 57.698 33.333 0.00 0.00 0.00 1.89
510 528 9.302345 GTCATTCTATTTTCACAGAGACGATAA 57.698 33.333 0.00 0.00 0.00 1.75
511 529 8.466798 TGTCATTCTATTTTCACAGAGACGATA 58.533 33.333 0.00 0.00 0.00 2.92
512 530 7.323420 TGTCATTCTATTTTCACAGAGACGAT 58.677 34.615 0.00 0.00 0.00 3.73
513 531 6.687604 TGTCATTCTATTTTCACAGAGACGA 58.312 36.000 0.00 0.00 0.00 4.20
514 532 6.951256 TGTCATTCTATTTTCACAGAGACG 57.049 37.500 0.00 0.00 0.00 4.18
515 533 8.484641 TCATGTCATTCTATTTTCACAGAGAC 57.515 34.615 0.00 0.00 0.00 3.36
516 534 7.767659 CCTCATGTCATTCTATTTTCACAGAGA 59.232 37.037 0.00 0.00 0.00 3.10
517 535 7.551974 ACCTCATGTCATTCTATTTTCACAGAG 59.448 37.037 0.00 0.00 0.00 3.35
524 542 9.965902 ACTTTCTACCTCATGTCATTCTATTTT 57.034 29.630 0.00 0.00 0.00 1.82
534 552 3.265791 CCTGCACTTTCTACCTCATGTC 58.734 50.000 0.00 0.00 0.00 3.06
536 554 3.055530 AGACCTGCACTTTCTACCTCATG 60.056 47.826 0.00 0.00 0.00 3.07
546 567 2.158623 TGATGAACCAGACCTGCACTTT 60.159 45.455 0.00 0.00 0.00 2.66
554 575 2.093764 CCTGACTCTGATGAACCAGACC 60.094 54.545 0.00 0.00 38.18 3.85
580 604 4.380531 TGCTTGACGTGAAAAGATCTTCT 58.619 39.130 8.78 0.00 0.00 2.85
599 623 4.674080 GCATATGCTGGCTGCTTTTGCT 62.674 50.000 26.76 8.16 44.25 3.91
601 625 1.567504 GCATATGCTGGCTGCTTTTG 58.432 50.000 20.64 15.82 43.37 2.44
602 626 0.462789 GGCATATGCTGGCTGCTTTT 59.537 50.000 26.12 3.83 46.59 2.27
604 628 3.851955 GGCATATGCTGGCTGCTT 58.148 55.556 26.12 13.33 46.59 3.91
610 634 1.549203 GGGGTTATGGCATATGCTGG 58.451 55.000 26.12 0.00 41.70 4.85
611 635 1.203038 TGGGGGTTATGGCATATGCTG 60.203 52.381 26.12 0.00 41.70 4.41
612 636 1.157111 TGGGGGTTATGGCATATGCT 58.843 50.000 26.12 11.00 41.70 3.79
613 637 1.256812 GTGGGGGTTATGGCATATGC 58.743 55.000 19.79 19.79 41.14 3.14
614 638 1.886222 CGGTGGGGGTTATGGCATATG 60.886 57.143 8.24 0.00 0.00 1.78
615 639 0.404040 CGGTGGGGGTTATGGCATAT 59.596 55.000 8.24 0.00 0.00 1.78
616 640 1.710996 CCGGTGGGGGTTATGGCATA 61.711 60.000 2.32 2.32 0.00 3.14
617 641 2.600731 CGGTGGGGGTTATGGCAT 59.399 61.111 4.88 4.88 0.00 4.40
618 642 3.733972 CCGGTGGGGGTTATGGCA 61.734 66.667 0.00 0.00 0.00 4.92
619 643 2.333701 CTACCGGTGGGGGTTATGGC 62.334 65.000 19.93 0.00 41.56 4.40
620 644 0.984432 ACTACCGGTGGGGGTTATGG 60.984 60.000 23.02 0.00 41.56 2.74
621 645 0.913924 AACTACCGGTGGGGGTTATG 59.086 55.000 23.02 1.49 41.56 1.90
622 646 1.561076 GAAACTACCGGTGGGGGTTAT 59.439 52.381 23.02 9.82 41.56 1.89
623 647 0.983467 GAAACTACCGGTGGGGGTTA 59.017 55.000 23.02 0.00 41.56 2.85
624 648 0.769386 AGAAACTACCGGTGGGGGTT 60.769 55.000 23.02 14.31 41.56 4.11
625 649 1.151965 AGAAACTACCGGTGGGGGT 60.152 57.895 23.02 10.37 44.23 4.95
626 650 1.196104 TCAGAAACTACCGGTGGGGG 61.196 60.000 23.02 9.73 41.60 5.40
627 651 0.909623 ATCAGAAACTACCGGTGGGG 59.090 55.000 23.02 12.22 43.62 4.96
628 652 1.831736 AGATCAGAAACTACCGGTGGG 59.168 52.381 23.02 14.76 40.11 4.61
785 811 0.951558 CCTGCAGTAAAGCCACGTTT 59.048 50.000 13.81 0.00 0.00 3.60
789 815 0.537371 ACACCCTGCAGTAAAGCCAC 60.537 55.000 13.81 0.00 0.00 5.01
799 829 0.537143 CAGCCTTGTTACACCCTGCA 60.537 55.000 0.00 0.00 0.00 4.41
803 833 1.866853 GCAGCAGCCTTGTTACACCC 61.867 60.000 0.00 0.00 33.58 4.61
804 834 0.890996 AGCAGCAGCCTTGTTACACC 60.891 55.000 0.00 0.00 43.56 4.16
829 859 1.670083 CACAGCTAGCACTGCAGCA 60.670 57.895 18.83 0.00 41.60 4.41
832 870 1.445871 CATTCACAGCTAGCACTGCA 58.554 50.000 18.83 1.77 41.60 4.41
848 886 3.009695 TGGTTAATTCGACCCACTCCATT 59.990 43.478 8.09 0.00 36.30 3.16
850 888 1.979308 TGGTTAATTCGACCCACTCCA 59.021 47.619 8.09 0.00 36.30 3.86
851 889 2.773993 TGGTTAATTCGACCCACTCC 57.226 50.000 8.09 0.00 36.30 3.85
854 892 6.505044 AAAGTAATGGTTAATTCGACCCAC 57.495 37.500 8.09 4.68 36.30 4.61
859 897 9.504708 TTCCACTAAAAGTAATGGTTAATTCGA 57.495 29.630 0.00 0.00 33.67 3.71
874 912 7.308589 CCATGGTGTTAACTCTTCCACTAAAAG 60.309 40.741 2.57 0.00 0.00 2.27
883 921 4.223032 TCCTCTCCATGGTGTTAACTCTTC 59.777 45.833 12.58 0.00 0.00 2.87
886 924 4.698575 GATCCTCTCCATGGTGTTAACTC 58.301 47.826 12.58 2.89 0.00 3.01
889 927 2.158957 GCGATCCTCTCCATGGTGTTAA 60.159 50.000 12.58 0.00 0.00 2.01
890 928 1.412710 GCGATCCTCTCCATGGTGTTA 59.587 52.381 12.58 0.00 0.00 2.41
892 930 0.977627 TGCGATCCTCTCCATGGTGT 60.978 55.000 12.58 0.00 0.00 4.16
893 931 0.249784 CTGCGATCCTCTCCATGGTG 60.250 60.000 12.58 9.91 0.00 4.17
894 932 1.406065 CCTGCGATCCTCTCCATGGT 61.406 60.000 12.58 0.00 0.00 3.55
980 1027 3.449227 CGCCCGCTCCAGAGTACA 61.449 66.667 0.00 0.00 0.00 2.90
981 1028 3.138798 TCGCCCGCTCCAGAGTAC 61.139 66.667 0.00 0.00 0.00 2.73
982 1029 3.138798 GTCGCCCGCTCCAGAGTA 61.139 66.667 0.00 0.00 0.00 2.59
1024 1071 2.048127 GCCGCTGAGGTTTCTCGT 60.048 61.111 0.00 0.00 42.79 4.18
1366 1413 1.065926 TGTGTGATGCCTGATGAGTCC 60.066 52.381 0.00 0.00 0.00 3.85
1377 1424 2.863153 GTGCTCGGTGTGTGATGC 59.137 61.111 0.00 0.00 0.00 3.91
1405 1452 0.037697 TTTCATCGTGAGTCGGGGTG 60.038 55.000 0.00 0.00 40.32 4.61
1406 1453 0.682852 TTTTCATCGTGAGTCGGGGT 59.317 50.000 0.00 0.00 40.32 4.95
1407 1454 1.665679 CATTTTCATCGTGAGTCGGGG 59.334 52.381 0.00 0.00 40.32 5.73
1410 1457 3.348309 CATGCATTTTCATCGTGAGTCG 58.652 45.455 0.00 0.00 41.41 4.18
1411 1458 3.103738 GCATGCATTTTCATCGTGAGTC 58.896 45.455 14.21 0.00 0.00 3.36
1424 1475 2.883574 CCTGATCAAAACGCATGCATT 58.116 42.857 19.57 5.64 0.00 3.56
1812 1875 2.345244 GATGAGGCCGCCGATGAT 59.655 61.111 3.22 0.00 0.00 2.45
1930 1997 2.125912 ACTCGCCATCAGACGCAC 60.126 61.111 0.00 0.00 0.00 5.34
1933 2000 0.179127 ACATCACTCGCCATCAGACG 60.179 55.000 0.00 0.00 0.00 4.18
1952 2019 7.286775 AGGGAGTACACTTTTGCAAAGATAAAA 59.713 33.333 12.41 0.00 0.00 1.52
1974 2041 5.791303 TCTTATATCACGGGATAGAGGGA 57.209 43.478 13.75 8.03 39.29 4.20
1975 2042 5.163642 CGTTCTTATATCACGGGATAGAGGG 60.164 48.000 13.75 5.87 39.29 4.30
1976 2043 5.415077 ACGTTCTTATATCACGGGATAGAGG 59.585 44.000 13.75 9.31 39.29 3.69
1977 2044 6.497785 ACGTTCTTATATCACGGGATAGAG 57.502 41.667 13.75 12.97 39.29 2.43
1978 2045 6.889301 AACGTTCTTATATCACGGGATAGA 57.111 37.500 13.75 5.61 39.29 1.98
1979 2046 7.941795 AAAACGTTCTTATATCACGGGATAG 57.058 36.000 13.75 1.24 39.29 2.08
1980 2047 7.980662 TCAAAAACGTTCTTATATCACGGGATA 59.019 33.333 10.37 10.37 40.17 2.59
1981 2048 6.819649 TCAAAAACGTTCTTATATCACGGGAT 59.180 34.615 5.05 5.05 38.26 3.85
1982 2049 6.091169 GTCAAAAACGTTCTTATATCACGGGA 59.909 38.462 0.00 0.00 38.26 5.14
1983 2050 6.128499 TGTCAAAAACGTTCTTATATCACGGG 60.128 38.462 0.00 0.00 38.26 5.28
1984 2051 6.735063 GTGTCAAAAACGTTCTTATATCACGG 59.265 38.462 0.00 0.00 38.26 4.94
1985 2052 7.507304 AGTGTCAAAAACGTTCTTATATCACG 58.493 34.615 0.00 0.00 39.86 4.35
1986 2053 9.953825 CTAGTGTCAAAAACGTTCTTATATCAC 57.046 33.333 0.00 6.13 0.00 3.06
1987 2054 9.701098 ACTAGTGTCAAAAACGTTCTTATATCA 57.299 29.630 0.00 0.00 0.00 2.15
1988 2055 9.953825 CACTAGTGTCAAAAACGTTCTTATATC 57.046 33.333 15.06 0.00 0.00 1.63
1989 2056 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
1990 2057 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
1991 2058 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
1992 2059 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
1993 2060 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
1994 2061 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
1995 2062 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
2008 2075 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
2009 2076 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
2010 2077 7.758980 TGTAAGAACGTTTTTGACACTACACTA 59.241 33.333 13.87 0.00 0.00 2.74
2011 2078 6.591062 TGTAAGAACGTTTTTGACACTACACT 59.409 34.615 13.87 0.00 0.00 3.55
2012 2079 6.764094 TGTAAGAACGTTTTTGACACTACAC 58.236 36.000 13.87 2.68 0.00 2.90
2013 2080 6.964741 TGTAAGAACGTTTTTGACACTACA 57.035 33.333 13.87 6.44 0.00 2.74
2016 2083 8.073768 CCATAATGTAAGAACGTTTTTGACACT 58.926 33.333 13.87 7.17 36.28 3.55
2017 2084 7.325097 CCCATAATGTAAGAACGTTTTTGACAC 59.675 37.037 13.87 5.34 36.28 3.67
2018 2085 7.228906 TCCCATAATGTAAGAACGTTTTTGACA 59.771 33.333 13.87 13.12 36.28 3.58
2019 2086 7.536281 GTCCCATAATGTAAGAACGTTTTTGAC 59.464 37.037 13.87 8.67 36.28 3.18
2020 2087 7.228906 TGTCCCATAATGTAAGAACGTTTTTGA 59.771 33.333 13.87 1.47 36.28 2.69
2021 2088 7.364200 TGTCCCATAATGTAAGAACGTTTTTG 58.636 34.615 13.87 0.00 36.28 2.44
2022 2089 7.446013 TCTGTCCCATAATGTAAGAACGTTTTT 59.554 33.333 9.22 9.22 36.28 1.94
2023 2090 6.938030 TCTGTCCCATAATGTAAGAACGTTTT 59.062 34.615 0.46 0.00 36.28 2.43
2024 2091 6.469410 TCTGTCCCATAATGTAAGAACGTTT 58.531 36.000 0.46 0.00 36.28 3.60
2025 2092 6.045072 TCTGTCCCATAATGTAAGAACGTT 57.955 37.500 0.00 0.00 38.41 3.99
2026 2093 5.395324 CCTCTGTCCCATAATGTAAGAACGT 60.395 44.000 0.00 0.00 0.00 3.99
2027 2094 5.050490 CCTCTGTCCCATAATGTAAGAACG 58.950 45.833 0.00 0.00 0.00 3.95
2028 2095 5.368989 CCCTCTGTCCCATAATGTAAGAAC 58.631 45.833 0.00 0.00 0.00 3.01
2029 2096 4.412199 CCCCTCTGTCCCATAATGTAAGAA 59.588 45.833 0.00 0.00 0.00 2.52
2030 2097 3.973973 CCCCTCTGTCCCATAATGTAAGA 59.026 47.826 0.00 0.00 0.00 2.10
2031 2098 3.073062 CCCCCTCTGTCCCATAATGTAAG 59.927 52.174 0.00 0.00 0.00 2.34
2032 2099 3.053077 CCCCCTCTGTCCCATAATGTAA 58.947 50.000 0.00 0.00 0.00 2.41
2033 2100 2.021441 ACCCCCTCTGTCCCATAATGTA 60.021 50.000 0.00 0.00 0.00 2.29
2034 2101 1.275002 ACCCCCTCTGTCCCATAATGT 60.275 52.381 0.00 0.00 0.00 2.71
2035 2102 1.522900 ACCCCCTCTGTCCCATAATG 58.477 55.000 0.00 0.00 0.00 1.90
2036 2103 2.699281 GGTACCCCCTCTGTCCCATAAT 60.699 54.545 0.00 0.00 0.00 1.28
2037 2104 1.344701 GGTACCCCCTCTGTCCCATAA 60.345 57.143 0.00 0.00 0.00 1.90
2038 2105 0.266753 GGTACCCCCTCTGTCCCATA 59.733 60.000 0.00 0.00 0.00 2.74
2039 2106 1.004361 GGTACCCCCTCTGTCCCAT 59.996 63.158 0.00 0.00 0.00 4.00
2040 2107 2.181773 AGGTACCCCCTCTGTCCCA 61.182 63.158 8.74 0.00 40.71 4.37
2041 2108 2.785703 AGGTACCCCCTCTGTCCC 59.214 66.667 8.74 0.00 40.71 4.46
2049 2116 3.389002 ACATACATTTACGAGGTACCCCC 59.611 47.826 8.74 0.00 0.00 5.40
2050 2117 4.099881 TGACATACATTTACGAGGTACCCC 59.900 45.833 8.74 0.00 0.00 4.95
2051 2118 5.266733 TGACATACATTTACGAGGTACCC 57.733 43.478 8.74 0.00 0.00 3.69
2052 2119 5.287226 CCTGACATACATTTACGAGGTACC 58.713 45.833 2.73 2.73 0.00 3.34
2053 2120 5.287226 CCCTGACATACATTTACGAGGTAC 58.713 45.833 0.00 0.00 0.00 3.34
2054 2121 4.202182 GCCCTGACATACATTTACGAGGTA 60.202 45.833 0.00 0.00 0.00 3.08
2055 2122 3.431766 GCCCTGACATACATTTACGAGGT 60.432 47.826 0.00 0.00 0.00 3.85
2056 2123 3.131396 GCCCTGACATACATTTACGAGG 58.869 50.000 0.00 0.00 0.00 4.63
2211 2280 5.569630 GCATCTACTCAAACCTCTTGGAAGA 60.570 44.000 0.00 0.00 37.04 2.87
2212 2281 4.633565 GCATCTACTCAAACCTCTTGGAAG 59.366 45.833 0.00 0.00 37.04 3.46
2214 2283 3.840666 AGCATCTACTCAAACCTCTTGGA 59.159 43.478 0.00 0.00 37.04 3.53
2216 2285 7.856145 ATTTAGCATCTACTCAAACCTCTTG 57.144 36.000 0.00 0.00 0.00 3.02
2283 4295 4.409247 GGATTGTGGTAGACTTATCCCTGT 59.591 45.833 0.00 0.00 33.60 4.00
2335 4347 2.002018 TTCCCAAGGCCTTGTTCGGT 62.002 55.000 37.09 4.72 38.85 4.69
2469 4481 4.763793 GGTGAGTTTCCCTTACCCTTTTAC 59.236 45.833 0.00 0.00 42.63 2.01
2526 4538 2.426024 CTGGAATCACATGCTCTTTGGG 59.574 50.000 0.00 0.00 0.00 4.12
2531 4543 5.948162 ACATTTTACTGGAATCACATGCTCT 59.052 36.000 0.00 0.00 0.00 4.09
2548 4560 5.883115 TCAGTTGGTGTTCACTCACATTTTA 59.117 36.000 2.98 0.00 39.76 1.52
2607 4667 7.180587 TGGTGGTTATGGTTATCTGTTACTGTA 59.819 37.037 0.00 0.00 0.00 2.74
2608 4668 6.013206 TGGTGGTTATGGTTATCTGTTACTGT 60.013 38.462 0.00 0.00 0.00 3.55
2609 4669 6.411376 TGGTGGTTATGGTTATCTGTTACTG 58.589 40.000 0.00 0.00 0.00 2.74
2610 4670 6.352737 CCTGGTGGTTATGGTTATCTGTTACT 60.353 42.308 0.00 0.00 0.00 2.24
2611 4671 5.820947 CCTGGTGGTTATGGTTATCTGTTAC 59.179 44.000 0.00 0.00 0.00 2.50
2612 4672 5.630539 GCCTGGTGGTTATGGTTATCTGTTA 60.631 44.000 0.00 0.00 35.27 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.