Multiple sequence alignment - TraesCS5B01G268400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G268400 chr5B 100.000 6241 0 0 1 6241 454658724 454652484 0.000000e+00 11526.0
1 TraesCS5B01G268400 chr5B 88.193 1389 92 24 4659 6006 454684319 454682962 0.000000e+00 1591.0
2 TraesCS5B01G268400 chr5B 96.220 873 26 4 1 867 351471768 351472639 0.000000e+00 1423.0
3 TraesCS5B01G268400 chr5B 96.220 873 25 5 1 867 471297143 471298013 0.000000e+00 1423.0
4 TraesCS5B01G268400 chr5B 78.532 1076 155 50 4198 5241 454636940 454637971 6.820000e-179 638.0
5 TraesCS5B01G268400 chr5B 76.968 1029 148 54 4197 5196 454476867 454477835 7.220000e-139 505.0
6 TraesCS5B01G268400 chr5B 93.388 242 15 1 4426 4666 454684970 454684729 2.140000e-94 357.0
7 TraesCS5B01G268400 chr5B 92.641 231 16 1 6011 6241 454682598 454682369 1.300000e-86 331.0
8 TraesCS5B01G268400 chr5B 96.875 128 4 0 3253 3380 79817866 79817993 1.360000e-51 215.0
9 TraesCS5B01G268400 chr5B 97.561 123 3 0 3260 3382 70795652 70795774 1.760000e-50 211.0
10 TraesCS5B01G268400 chr5B 93.913 115 7 0 4201 4315 454686924 454686810 2.310000e-39 174.0
11 TraesCS5B01G268400 chr5B 75.783 351 68 13 4489 4830 454491485 454491143 1.800000e-35 161.0
12 TraesCS5B01G268400 chr5B 83.146 178 23 5 2902 3074 531682414 531682239 8.380000e-34 156.0
13 TraesCS5B01G268400 chr5B 75.562 356 61 19 4489 4830 454403407 454403064 1.080000e-32 152.0
14 TraesCS5B01G268400 chr5B 91.667 108 9 0 1015 1122 454636508 454636615 3.900000e-32 150.0
15 TraesCS5B01G268400 chr5B 90.741 108 10 0 1015 1122 454476434 454476541 1.810000e-30 145.0
16 TraesCS5B01G268400 chr5B 90.654 107 10 0 1015 1121 454407138 454407032 6.520000e-30 143.0
17 TraesCS5B01G268400 chr5B 95.506 89 1 1 2231 2316 511025577 511025665 8.440000e-29 139.0
18 TraesCS5B01G268400 chr5B 94.505 91 2 1 2229 2316 684240821 684240911 3.030000e-28 137.0
19 TraesCS5B01G268400 chr5B 93.056 72 3 2 1330 1400 83189973 83189903 3.080000e-18 104.0
20 TraesCS5B01G268400 chr5B 91.667 60 5 0 4339 4398 454686816 454686757 4.010000e-12 84.2
21 TraesCS5B01G268400 chr5B 84.524 84 13 0 6022 6105 584880927 584881010 4.010000e-12 84.2
22 TraesCS5B01G268400 chr5B 92.857 56 4 0 6110 6165 700225905 700225960 1.440000e-11 82.4
23 TraesCS5B01G268400 chr5D 93.114 2033 87 24 4222 6241 378997235 378995243 0.000000e+00 2929.0
24 TraesCS5B01G268400 chr5D 78.585 1074 154 51 4197 5241 378957086 378958112 1.900000e-179 640.0
25 TraesCS5B01G268400 chr5D 98.361 122 2 0 3263 3384 420228283 420228162 1.360000e-51 215.0
26 TraesCS5B01G268400 chr5D 72.742 631 135 31 4218 4831 378898650 378898040 1.790000e-40 178.0
27 TraesCS5B01G268400 chr5D 93.269 104 7 0 1015 1118 378956656 378956759 3.010000e-33 154.0
28 TraesCS5B01G268400 chr5D 91.346 104 9 0 1018 1121 378899257 378899154 6.520000e-30 143.0
29 TraesCS5B01G268400 chr5D 88.889 81 8 1 2155 2234 71275457 71275537 1.430000e-16 99.0
30 TraesCS5B01G268400 chr5D 89.552 67 7 0 4165 4231 379000189 379000123 1.110000e-12 86.1
31 TraesCS5B01G268400 chr5D 97.368 38 1 0 4099 4136 530875095 530875132 1.450000e-06 65.8
32 TraesCS5B01G268400 chr7B 96.911 874 22 2 1 869 212067457 212066584 0.000000e+00 1459.0
33 TraesCS5B01G268400 chr7B 96.216 872 28 2 1 867 102650459 102649588 0.000000e+00 1423.0
34 TraesCS5B01G268400 chr7B 83.598 756 88 21 1397 2129 746980565 746981307 0.000000e+00 676.0
35 TraesCS5B01G268400 chr7B 79.110 517 87 11 1621 2128 711461358 711461862 2.790000e-88 337.0
36 TraesCS5B01G268400 chr7B 87.097 248 31 1 1882 2129 664844058 664843812 4.760000e-71 279.0
37 TraesCS5B01G268400 chr7B 90.789 76 7 0 2054 2129 244688347 244688422 1.110000e-17 102.0
38 TraesCS5B01G268400 chr7B 92.958 71 4 1 2054 2123 244688532 244688602 1.110000e-17 102.0
39 TraesCS5B01G268400 chr7B 75.943 212 34 14 2902 3101 22889093 22888887 6.660000e-15 93.5
40 TraesCS5B01G268400 chr7B 75.943 212 34 14 2902 3101 22960049 22959843 6.660000e-15 93.5
41 TraesCS5B01G268400 chr7B 75.962 208 32 17 2902 3101 22829308 22829111 2.400000e-14 91.6
42 TraesCS5B01G268400 chr7B 76.596 188 26 15 2926 3101 22664286 22664105 3.100000e-13 87.9
43 TraesCS5B01G268400 chr2B 97.011 870 23 3 1 868 154587716 154588584 0.000000e+00 1459.0
44 TraesCS5B01G268400 chr2B 89.610 77 6 2 6020 6096 571356786 571356712 5.150000e-16 97.1
45 TraesCS5B01G268400 chr2B 75.829 211 34 15 2900 3097 765186301 765186095 2.400000e-14 91.6
46 TraesCS5B01G268400 chr2B 95.122 41 2 0 4103 4143 142921539 142921499 1.450000e-06 65.8
47 TraesCS5B01G268400 chr7A 96.343 875 25 4 1 869 497721683 497722556 0.000000e+00 1432.0
48 TraesCS5B01G268400 chr7A 93.750 48 0 3 4098 4142 94486414 94486367 1.120000e-07 69.4
49 TraesCS5B01G268400 chr7A 95.122 41 2 0 4103 4143 257126000 257126040 1.450000e-06 65.8
50 TraesCS5B01G268400 chr7A 90.196 51 3 2 4088 4136 537578645 537578595 1.450000e-06 65.8
51 TraesCS5B01G268400 chr5A 96.339 874 27 2 1 869 591471630 591470757 0.000000e+00 1432.0
52 TraesCS5B01G268400 chr5A 86.491 1251 101 32 4168 5386 479201354 479200140 0.000000e+00 1312.0
53 TraesCS5B01G268400 chr5A 87.053 1174 86 36 4168 5308 479227370 479226230 0.000000e+00 1266.0
54 TraesCS5B01G268400 chr5A 86.492 955 84 15 2325 3266 479203285 479202363 0.000000e+00 1007.0
55 TraesCS5B01G268400 chr5A 86.222 675 77 10 3381 4041 479202366 479201694 0.000000e+00 717.0
56 TraesCS5B01G268400 chr5A 86.330 673 49 20 5371 6006 479196711 479196045 0.000000e+00 693.0
57 TraesCS5B01G268400 chr5A 77.416 1076 175 38 4197 5241 479047419 479048457 4.190000e-161 579.0
58 TraesCS5B01G268400 chr5A 78.375 763 116 34 1395 2133 576298692 576297955 3.430000e-122 449.0
59 TraesCS5B01G268400 chr5A 88.923 325 18 9 2410 2716 479229336 479229012 9.810000e-103 385.0
60 TraesCS5B01G268400 chr5A 76.368 749 126 28 1397 2129 24388462 24387749 7.700000e-94 355.0
61 TraesCS5B01G268400 chr5A 88.652 282 21 4 868 1139 479205124 479204844 3.610000e-87 333.0
62 TraesCS5B01G268400 chr5A 92.140 229 18 0 6011 6239 479189078 479188850 2.170000e-84 324.0
63 TraesCS5B01G268400 chr5A 87.919 149 13 3 1015 1159 479232261 479232114 2.990000e-38 171.0
64 TraesCS5B01G268400 chr5A 93.519 108 7 0 1015 1122 479046985 479047092 1.800000e-35 161.0
65 TraesCS5B01G268400 chr5A 89.431 123 13 0 5352 5474 479225810 479225688 8.380000e-34 156.0
66 TraesCS5B01G268400 chr5A 75.499 351 67 14 4489 4830 478991907 478991567 3.010000e-33 154.0
67 TraesCS5B01G268400 chr5A 91.358 81 6 1 2155 2234 61296677 61296597 6.610000e-20 110.0
68 TraesCS5B01G268400 chr5A 95.522 67 2 1 1330 1396 61524332 61524267 8.560000e-19 106.0
69 TraesCS5B01G268400 chr5A 90.123 81 7 1 2155 2234 61289032 61288952 3.080000e-18 104.0
70 TraesCS5B01G268400 chr5A 90.123 81 7 1 2155 2234 61298594 61298514 3.080000e-18 104.0
71 TraesCS5B01G268400 chr5A 88.889 81 8 1 2155 2234 61290917 61290837 1.430000e-16 99.0
72 TraesCS5B01G268400 chr3A 96.220 873 28 2 1 868 237050860 237049988 0.000000e+00 1424.0
73 TraesCS5B01G268400 chr3A 95.349 129 6 0 3255 3383 619645856 619645984 8.200000e-49 206.0
74 TraesCS5B01G268400 chr4B 96.216 872 28 2 1 867 655788824 655787953 0.000000e+00 1423.0
75 TraesCS5B01G268400 chr7D 85.298 755 87 14 1396 2129 264365526 264366277 0.000000e+00 758.0
76 TraesCS5B01G268400 chr7D 84.595 740 86 14 1409 2129 47273327 47274057 0.000000e+00 710.0
77 TraesCS5B01G268400 chr7D 86.207 261 28 7 1397 1653 563073075 563072819 6.160000e-70 276.0
78 TraesCS5B01G268400 chr7D 94.505 91 2 1 2231 2318 622185150 622185060 3.030000e-28 137.0
79 TraesCS5B01G268400 chr7D 89.815 108 4 5 2214 2314 613432648 613432755 1.410000e-26 132.0
80 TraesCS5B01G268400 chr7D 90.426 94 9 0 1017 1110 506675094 506675187 2.360000e-24 124.0
81 TraesCS5B01G268400 chr7D 75.701 214 33 15 2902 3101 76509015 76508807 8.620000e-14 89.8
82 TraesCS5B01G268400 chr7D 82.857 105 13 4 1647 1748 254304005 254304107 8.620000e-14 89.8
83 TraesCS5B01G268400 chr3D 83.663 759 93 21 1397 2133 349976482 349975733 0.000000e+00 686.0
84 TraesCS5B01G268400 chr3D 81.325 755 104 22 1399 2129 401886547 401885806 4.190000e-161 579.0
85 TraesCS5B01G268400 chr3D 98.333 120 2 0 3263 3382 346837445 346837564 1.760000e-50 211.0
86 TraesCS5B01G268400 chr3D 94.030 134 6 1 3246 3379 7308188 7308057 1.060000e-47 202.0
87 TraesCS5B01G268400 chr3D 78.788 99 21 0 2900 2998 38191421 38191323 4.040000e-07 67.6
88 TraesCS5B01G268400 chr3D 90.196 51 3 2 4088 4136 175707198 175707248 1.450000e-06 65.8
89 TraesCS5B01G268400 chr3D 87.037 54 7 0 6112 6165 504265538 504265591 1.880000e-05 62.1
90 TraesCS5B01G268400 chr6A 82.700 763 92 20 1399 2129 58699537 58700291 5.270000e-180 641.0
91 TraesCS5B01G268400 chr6A 97.590 83 1 1 2233 2314 531278939 531279021 2.350000e-29 141.0
92 TraesCS5B01G268400 chr6A 94.505 91 2 1 2227 2314 418953994 418954084 3.030000e-28 137.0
93 TraesCS5B01G268400 chr6A 86.170 94 13 0 6015 6108 482571580 482571673 1.110000e-17 102.0
94 TraesCS5B01G268400 chr6A 82.857 70 12 0 6107 6176 529029693 529029762 5.220000e-06 63.9
95 TraesCS5B01G268400 chr1A 84.192 563 64 15 1393 1932 6402825 6403385 1.990000e-144 523.0
96 TraesCS5B01G268400 chr1A 76.098 410 73 17 1524 1915 42180611 42180209 2.300000e-44 191.0
97 TraesCS5B01G268400 chr1A 73.148 324 58 21 2900 3210 20892964 20892657 8.620000e-14 89.8
98 TraesCS5B01G268400 chr3B 79.361 751 129 17 1401 2129 527372198 527371452 7.220000e-139 505.0
99 TraesCS5B01G268400 chr3B 98.361 122 2 0 3260 3381 537036845 537036724 1.360000e-51 215.0
100 TraesCS5B01G268400 chr3B 84.146 82 12 1 6025 6106 665873941 665874021 1.870000e-10 78.7
101 TraesCS5B01G268400 chr2D 77.135 761 113 35 1397 2129 629464663 629463936 9.810000e-103 385.0
102 TraesCS5B01G268400 chr2D 87.356 87 11 0 6021 6107 486396683 486396597 3.980000e-17 100.0
103 TraesCS5B01G268400 chr2D 95.238 42 1 1 4103 4143 26776079 26776038 1.450000e-06 65.8
104 TraesCS5B01G268400 chrUn 81.117 376 62 9 1395 1762 45464012 45464386 6.120000e-75 292.0
105 TraesCS5B01G268400 chrUn 96.825 63 2 0 1334 1396 197948230 197948292 8.560000e-19 106.0
106 TraesCS5B01G268400 chrUn 96.825 63 2 0 1334 1396 403901290 403901352 8.560000e-19 106.0
107 TraesCS5B01G268400 chrUn 95.522 67 2 1 1330 1396 456929012 456929077 8.560000e-19 106.0
108 TraesCS5B01G268400 chrUn 93.056 72 3 2 1325 1396 145887513 145887582 3.080000e-18 104.0
109 TraesCS5B01G268400 chrUn 88.889 81 8 1 2155 2234 145914894 145914974 1.430000e-16 99.0
110 TraesCS5B01G268400 chrUn 88.889 81 8 1 2155 2234 145917833 145917913 1.430000e-16 99.0
111 TraesCS5B01G268400 chrUn 88.889 81 8 1 2155 2234 161100357 161100437 1.430000e-16 99.0
112 TraesCS5B01G268400 chrUn 88.889 81 8 1 2155 2234 161104762 161104842 1.430000e-16 99.0
113 TraesCS5B01G268400 chr2A 79.059 425 60 16 1394 1804 723572772 723573181 1.330000e-66 265.0
114 TraesCS5B01G268400 chr6D 95.420 131 6 0 3254 3384 430998455 430998585 6.340000e-50 209.0
115 TraesCS5B01G268400 chr6D 91.837 98 4 2 2221 2314 364492541 364492638 3.930000e-27 134.0
116 TraesCS5B01G268400 chr6D 90.196 51 3 2 4088 4136 233159382 233159432 1.450000e-06 65.8
117 TraesCS5B01G268400 chr6D 88.235 51 4 2 4088 4136 260641745 260641795 6.760000e-05 60.2
118 TraesCS5B01G268400 chr6B 95.385 130 5 1 3252 3381 32822526 32822654 8.200000e-49 206.0
119 TraesCS5B01G268400 chr1B 95.455 88 2 2 2230 2315 341747866 341747953 8.440000e-29 139.0
120 TraesCS5B01G268400 chr1B 95.522 67 2 1 1330 1396 42613982 42614047 8.560000e-19 106.0
121 TraesCS5B01G268400 chr1B 96.825 63 2 0 1334 1396 42619623 42619685 8.560000e-19 106.0
122 TraesCS5B01G268400 chr4A 89.423 104 6 3 2226 2326 570977132 570977233 6.570000e-25 126.0
123 TraesCS5B01G268400 chr4A 81.818 77 11 3 6095 6169 616262292 616262217 1.880000e-05 62.1
124 TraesCS5B01G268400 chr4A 91.111 45 4 0 6125 6169 616309096 616309052 1.880000e-05 62.1
125 TraesCS5B01G268400 chr1D 96.825 63 2 0 1334 1396 27306415 27306477 8.560000e-19 106.0
126 TraesCS5B01G268400 chr4D 84.158 101 14 2 6020 6118 119361542 119361442 5.150000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G268400 chr5B 454652484 454658724 6240 True 11526.00 11526 100.0000 1 6241 1 chr5B.!!$R3 6240
1 TraesCS5B01G268400 chr5B 351471768 351472639 871 False 1423.00 1423 96.2200 1 867 1 chr5B.!!$F3 866
2 TraesCS5B01G268400 chr5B 471297143 471298013 870 False 1423.00 1423 96.2200 1 867 1 chr5B.!!$F4 866
3 TraesCS5B01G268400 chr5B 454682369 454686924 4555 True 507.44 1591 91.9604 4201 6241 5 chr5B.!!$R6 2040
4 TraesCS5B01G268400 chr5B 454636508 454637971 1463 False 394.00 638 85.0995 1015 5241 2 chr5B.!!$F10 4226
5 TraesCS5B01G268400 chr5B 454476434 454477835 1401 False 325.00 505 83.8545 1015 5196 2 chr5B.!!$F9 4181
6 TraesCS5B01G268400 chr5D 378995243 379000189 4946 True 1507.55 2929 91.3330 4165 6241 2 chr5D.!!$R3 2076
7 TraesCS5B01G268400 chr5D 378956656 378958112 1456 False 397.00 640 85.9270 1015 5241 2 chr5D.!!$F3 4226
8 TraesCS5B01G268400 chr7B 212066584 212067457 873 True 1459.00 1459 96.9110 1 869 1 chr7B.!!$R6 868
9 TraesCS5B01G268400 chr7B 102649588 102650459 871 True 1423.00 1423 96.2160 1 867 1 chr7B.!!$R5 866
10 TraesCS5B01G268400 chr7B 746980565 746981307 742 False 676.00 676 83.5980 1397 2129 1 chr7B.!!$F2 732
11 TraesCS5B01G268400 chr7B 711461358 711461862 504 False 337.00 337 79.1100 1621 2128 1 chr7B.!!$F1 507
12 TraesCS5B01G268400 chr2B 154587716 154588584 868 False 1459.00 1459 97.0110 1 868 1 chr2B.!!$F1 867
13 TraesCS5B01G268400 chr7A 497721683 497722556 873 False 1432.00 1432 96.3430 1 869 1 chr7A.!!$F2 868
14 TraesCS5B01G268400 chr5A 591470757 591471630 873 True 1432.00 1432 96.3390 1 869 1 chr5A.!!$R6 868
15 TraesCS5B01G268400 chr5A 479196045 479205124 9079 True 812.40 1312 86.8374 868 6006 5 chr5A.!!$R9 5138
16 TraesCS5B01G268400 chr5A 479225688 479232261 6573 True 494.50 1266 88.3315 1015 5474 4 chr5A.!!$R10 4459
17 TraesCS5B01G268400 chr5A 576297955 576298692 737 True 449.00 449 78.3750 1395 2133 1 chr5A.!!$R5 738
18 TraesCS5B01G268400 chr5A 479046985 479048457 1472 False 370.00 579 85.4675 1015 5241 2 chr5A.!!$F1 4226
19 TraesCS5B01G268400 chr5A 24387749 24388462 713 True 355.00 355 76.3680 1397 2129 1 chr5A.!!$R1 732
20 TraesCS5B01G268400 chr3A 237049988 237050860 872 True 1424.00 1424 96.2200 1 868 1 chr3A.!!$R1 867
21 TraesCS5B01G268400 chr4B 655787953 655788824 871 True 1423.00 1423 96.2160 1 867 1 chr4B.!!$R1 866
22 TraesCS5B01G268400 chr7D 264365526 264366277 751 False 758.00 758 85.2980 1396 2129 1 chr7D.!!$F3 733
23 TraesCS5B01G268400 chr7D 47273327 47274057 730 False 710.00 710 84.5950 1409 2129 1 chr7D.!!$F1 720
24 TraesCS5B01G268400 chr3D 349975733 349976482 749 True 686.00 686 83.6630 1397 2133 1 chr3D.!!$R3 736
25 TraesCS5B01G268400 chr3D 401885806 401886547 741 True 579.00 579 81.3250 1399 2129 1 chr3D.!!$R4 730
26 TraesCS5B01G268400 chr6A 58699537 58700291 754 False 641.00 641 82.7000 1399 2129 1 chr6A.!!$F1 730
27 TraesCS5B01G268400 chr1A 6402825 6403385 560 False 523.00 523 84.1920 1393 1932 1 chr1A.!!$F1 539
28 TraesCS5B01G268400 chr3B 527371452 527372198 746 True 505.00 505 79.3610 1401 2129 1 chr3B.!!$R1 728
29 TraesCS5B01G268400 chr2D 629463936 629464663 727 True 385.00 385 77.1350 1397 2129 1 chr2D.!!$R3 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 965 0.384669 CTACTACTTAAGGCCGCGCT 59.615 55.0 5.56 0.00 0.00 5.92 F
1366 2618 0.396811 AGCACTAAAGCACCGGAACT 59.603 50.0 9.46 0.60 36.85 3.01 F
2158 4602 0.613260 ACCTCAAGCATCGCCAGTTA 59.387 50.0 0.00 0.00 0.00 2.24 F
3293 6567 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.0 0.00 0.00 44.93 4.30 F
3375 6649 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
3377 6651 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.0 13.64 0.00 46.06 3.85 F
3378 6652 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 4583 0.613260 TAACTGGCGATGCTTGAGGT 59.387 50.000 0.00 0.0 0.00 3.85 R
3274 6548 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.0 41.36 5.14 R
3358 6632 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.0 44.66 1.40 R
4150 8105 0.173935 TCCGCACGATTACGATGGTT 59.826 50.000 0.00 0.0 42.66 3.67 R
5079 14211 0.895530 AGCTTTTCGGAGGTCATCGA 59.104 50.000 0.00 0.0 0.00 3.59 R
5171 14303 2.529389 ACGCCCTCCAGAAACCCT 60.529 61.111 0.00 0.0 0.00 4.34 R
5253 14386 2.858646 GCTCGCCCAAACTTCTTCAAAC 60.859 50.000 0.00 0.0 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 257 8.439964 AGTTAACCCTAATCACTAACTAACCA 57.560 34.615 0.88 0.00 32.44 3.67
513 521 5.309543 TGTACCTTTTGGAGAGGATTTGAGA 59.690 40.000 0.00 0.00 44.07 3.27
581 591 3.797353 GCTCGGGCTGGATTGGGA 61.797 66.667 0.00 0.00 35.22 4.37
832 843 3.067684 ACGAGGTCAAATCGGGATTTT 57.932 42.857 3.97 0.00 44.36 1.82
840 851 4.054671 TCAAATCGGGATTTTGTTTGCAC 58.945 39.130 3.97 0.00 38.84 4.57
841 852 3.742433 AATCGGGATTTTGTTTGCACA 57.258 38.095 0.00 0.00 0.00 4.57
843 854 3.742433 TCGGGATTTTGTTTGCACAAT 57.258 38.095 0.00 0.00 42.66 2.71
872 883 4.759693 AGAACAGTAATTTTGTCCGCATGA 59.240 37.500 0.00 0.00 0.00 3.07
885 896 1.445410 GCATGACCGCACGTCTACA 60.445 57.895 0.00 0.00 42.49 2.74
909 920 7.444183 ACATCCACTCATTTCTTCTTTTTCGTA 59.556 33.333 0.00 0.00 0.00 3.43
946 965 0.384669 CTACTACTTAAGGCCGCGCT 59.615 55.000 5.56 0.00 0.00 5.92
950 969 1.669049 TACTTAAGGCCGCGCTAGCA 61.669 55.000 16.45 0.00 45.49 3.49
959 978 1.741770 CGCGCTAGCAAAGAAGGGT 60.742 57.895 16.45 0.00 45.49 4.34
986 1005 2.588856 ATCGACCGGCCTTGGCTAAC 62.589 60.000 11.71 1.01 0.00 2.34
1003 1022 2.278792 CGATCAGCGCGACCATGA 60.279 61.111 12.10 8.36 0.00 3.07
1009 1028 2.819595 GCGCGACCATGACCACAT 60.820 61.111 12.10 0.00 37.19 3.21
1118 1137 1.362717 CCGTCCGCGATCTTGGTAT 59.637 57.895 8.23 0.00 41.33 2.73
1122 1141 2.351447 CGTCCGCGATCTTGGTATGTAT 60.351 50.000 8.23 0.00 41.33 2.29
1228 2445 6.720112 AGTAGATACAAACCCACGCTATAA 57.280 37.500 0.00 0.00 0.00 0.98
1232 2449 3.775661 ACAAACCCACGCTATAAATGC 57.224 42.857 0.00 0.00 0.00 3.56
1233 2450 3.352648 ACAAACCCACGCTATAAATGCT 58.647 40.909 0.00 0.00 0.00 3.79
1236 2453 3.402628 ACCCACGCTATAAATGCTAGG 57.597 47.619 0.00 0.00 0.00 3.02
1238 2455 2.076863 CCACGCTATAAATGCTAGGGC 58.923 52.381 0.00 0.00 33.68 5.19
1239 2456 2.289694 CCACGCTATAAATGCTAGGGCT 60.290 50.000 0.00 0.00 39.59 5.19
1240 2457 3.403038 CACGCTATAAATGCTAGGGCTT 58.597 45.455 0.00 0.00 39.59 4.35
1244 2495 4.550422 GCTATAAATGCTAGGGCTTTTGC 58.450 43.478 10.61 4.26 42.86 3.68
1256 2507 4.641396 AGGGCTTTTGCTAATTTGGAAAC 58.359 39.130 6.10 0.00 46.54 2.78
1260 2511 6.708502 GGGCTTTTGCTAATTTGGAAACTTAA 59.291 34.615 6.10 0.00 46.54 1.85
1264 2515 8.880878 TTTTGCTAATTTGGAAACTTAAGTCC 57.119 30.769 8.95 7.49 0.00 3.85
1265 2516 6.584185 TGCTAATTTGGAAACTTAAGTCCC 57.416 37.500 8.95 13.44 32.48 4.46
1266 2517 6.071984 TGCTAATTTGGAAACTTAAGTCCCA 58.928 36.000 19.85 19.85 32.48 4.37
1268 2519 7.035612 GCTAATTTGGAAACTTAAGTCCCATG 58.964 38.462 22.67 14.54 32.48 3.66
1269 2520 6.358974 AATTTGGAAACTTAAGTCCCATGG 57.641 37.500 22.67 4.14 32.48 3.66
1271 2522 5.586155 TTGGAAACTTAAGTCCCATGGTA 57.414 39.130 22.67 10.86 32.48 3.25
1274 2525 6.007703 TGGAAACTTAAGTCCCATGGTAAAG 58.992 40.000 19.85 8.80 32.48 1.85
1275 2526 6.183361 TGGAAACTTAAGTCCCATGGTAAAGA 60.183 38.462 19.85 0.00 32.48 2.52
1276 2527 6.374613 GGAAACTTAAGTCCCATGGTAAAGAG 59.625 42.308 11.73 4.02 0.00 2.85
1277 2528 5.437191 ACTTAAGTCCCATGGTAAAGAGG 57.563 43.478 11.73 0.00 0.00 3.69
1279 2530 5.045797 ACTTAAGTCCCATGGTAAAGAGGAC 60.046 44.000 11.73 8.88 46.04 3.85
1283 2534 5.632034 GTCCCATGGTAAAGAGGACTATT 57.368 43.478 11.73 0.00 43.04 1.73
1284 2535 5.368989 GTCCCATGGTAAAGAGGACTATTG 58.631 45.833 11.73 0.00 43.04 1.90
1286 2537 6.099269 GTCCCATGGTAAAGAGGACTATTGTA 59.901 42.308 11.73 0.00 43.04 2.41
1287 2538 6.099269 TCCCATGGTAAAGAGGACTATTGTAC 59.901 42.308 11.73 0.00 0.00 2.90
1289 2540 7.335627 CCATGGTAAAGAGGACTATTGTACAA 58.664 38.462 11.41 11.41 0.00 2.41
1291 2542 8.830580 CATGGTAAAGAGGACTATTGTACAATG 58.169 37.037 27.62 19.59 32.50 2.82
1292 2543 7.335627 TGGTAAAGAGGACTATTGTACAATGG 58.664 38.462 27.62 26.45 35.68 3.16
1293 2544 7.037873 TGGTAAAGAGGACTATTGTACAATGGT 60.038 37.037 30.69 30.69 43.73 3.55
1294 2545 7.827729 GGTAAAGAGGACTATTGTACAATGGTT 59.172 37.037 30.74 20.07 41.60 3.67
1297 2548 9.975218 AAAGAGGACTATTGTACAATGGTTTAT 57.025 29.630 30.74 21.63 41.60 1.40
1298 2549 8.964476 AGAGGACTATTGTACAATGGTTTATG 57.036 34.615 30.74 14.77 41.60 1.90
1299 2550 7.499232 AGAGGACTATTGTACAATGGTTTATGC 59.501 37.037 30.74 20.22 41.60 3.14
1349 2600 2.445565 TGAGATGCGATCATACCAGC 57.554 50.000 0.00 0.00 31.96 4.85
1364 2616 0.605319 CCAGCACTAAAGCACCGGAA 60.605 55.000 9.46 0.00 36.85 4.30
1365 2617 0.517316 CAGCACTAAAGCACCGGAAC 59.483 55.000 9.46 0.00 36.85 3.62
1366 2618 0.396811 AGCACTAAAGCACCGGAACT 59.603 50.000 9.46 0.60 36.85 3.01
1375 2627 1.079503 GCACCGGAACTCATCAGAAC 58.920 55.000 9.46 0.00 0.00 3.01
1377 2629 2.872038 GCACCGGAACTCATCAGAACTT 60.872 50.000 9.46 0.00 0.00 2.66
1470 2901 3.434641 CGAGAGCACTGATTCAAACACAT 59.565 43.478 0.00 0.00 0.00 3.21
1492 2929 1.078072 ACCACCGCACTCAACACAA 60.078 52.632 0.00 0.00 0.00 3.33
1501 2939 2.874849 CACTCAACACAAACACCCAAC 58.125 47.619 0.00 0.00 0.00 3.77
1518 2958 4.196193 CCCAACGCAAGATATAAAGGTGA 58.804 43.478 0.00 0.00 43.62 4.02
1519 2959 4.638421 CCCAACGCAAGATATAAAGGTGAA 59.362 41.667 0.00 0.00 43.62 3.18
1580 3020 6.756074 CACTACAAATGAGCAAAGAAAAACCA 59.244 34.615 0.00 0.00 0.00 3.67
1591 3203 1.681264 AGAAAAACCACTTTGAGCCGG 59.319 47.619 0.00 0.00 0.00 6.13
1605 3331 2.983592 CCGGCAAAGACCACCACC 60.984 66.667 0.00 0.00 0.00 4.61
1630 3439 2.903357 TCCATCAAGGAGAGGCGC 59.097 61.111 0.00 0.00 43.07 6.53
1634 3443 2.351244 ATCAAGGAGAGGCGCGACA 61.351 57.895 17.71 0.00 0.00 4.35
1700 3614 2.421739 GACCACGATAGCCGCCAT 59.578 61.111 0.00 0.00 43.32 4.40
1711 3626 3.911698 CCGCCATCGTCCGATCCA 61.912 66.667 0.00 0.00 31.62 3.41
1788 3719 1.662446 GAGGAAACGACGACCGCAA 60.662 57.895 0.00 0.00 43.32 4.85
1951 4392 2.185310 GATCAACACGCCTCCCACCT 62.185 60.000 0.00 0.00 0.00 4.00
2002 4444 1.879575 TGAGACCATCGAAGGGGATT 58.120 50.000 12.02 0.00 0.00 3.01
2026 4468 4.329545 GACAGCTCCGCCAACCCA 62.330 66.667 0.00 0.00 0.00 4.51
2035 4477 2.519780 GCCAACCCAAACCACCGA 60.520 61.111 0.00 0.00 0.00 4.69
2133 4577 3.706373 GGAGGAGCGGCACTTGGA 61.706 66.667 1.45 0.00 0.00 3.53
2134 4578 2.347490 GAGGAGCGGCACTTGGAA 59.653 61.111 1.45 0.00 0.00 3.53
2148 4592 2.575532 CTTGGAAAGTGACCTCAAGCA 58.424 47.619 0.00 0.00 39.70 3.91
2149 4593 2.957402 TGGAAAGTGACCTCAAGCAT 57.043 45.000 0.00 0.00 0.00 3.79
2150 4594 2.783135 TGGAAAGTGACCTCAAGCATC 58.217 47.619 0.00 0.00 0.00 3.91
2152 4596 1.129437 GAAAGTGACCTCAAGCATCGC 59.871 52.381 0.00 0.00 0.00 4.58
2153 4597 0.674895 AAGTGACCTCAAGCATCGCC 60.675 55.000 0.00 0.00 0.00 5.54
2154 4598 1.375908 GTGACCTCAAGCATCGCCA 60.376 57.895 0.00 0.00 0.00 5.69
2155 4599 1.078918 TGACCTCAAGCATCGCCAG 60.079 57.895 0.00 0.00 0.00 4.85
2156 4600 1.078848 GACCTCAAGCATCGCCAGT 60.079 57.895 0.00 0.00 0.00 4.00
2157 4601 0.674895 GACCTCAAGCATCGCCAGTT 60.675 55.000 0.00 0.00 0.00 3.16
2158 4602 0.613260 ACCTCAAGCATCGCCAGTTA 59.387 50.000 0.00 0.00 0.00 2.24
2159 4603 1.003118 ACCTCAAGCATCGCCAGTTAA 59.997 47.619 0.00 0.00 0.00 2.01
2160 4604 1.667724 CCTCAAGCATCGCCAGTTAAG 59.332 52.381 0.00 0.00 0.00 1.85
2161 4605 1.063174 CTCAAGCATCGCCAGTTAAGC 59.937 52.381 0.00 0.00 0.00 3.09
2164 4608 1.019673 AGCATCGCCAGTTAAGCATG 58.980 50.000 0.00 0.00 0.00 4.06
2222 5023 6.066410 CGTGAAAAATCATTGTGTTGCATTC 58.934 36.000 0.00 0.00 0.00 2.67
2224 5025 6.203338 GTGAAAAATCATTGTGTTGCATTCCT 59.797 34.615 0.00 0.00 0.00 3.36
2239 5040 5.332743 TGCATTCCTTTTGAATTACTCCCT 58.667 37.500 0.00 0.00 41.85 4.20
2242 5043 4.216411 TCCTTTTGAATTACTCCCTCCG 57.784 45.455 0.00 0.00 0.00 4.63
2244 5045 3.939592 CCTTTTGAATTACTCCCTCCGTC 59.060 47.826 0.00 0.00 0.00 4.79
2245 5046 3.622166 TTTGAATTACTCCCTCCGTCC 57.378 47.619 0.00 0.00 0.00 4.79
2246 5047 1.492764 TGAATTACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
2247 5048 1.273381 TGAATTACTCCCTCCGTCCCA 60.273 52.381 0.00 0.00 0.00 4.37
2249 5050 3.236896 GAATTACTCCCTCCGTCCCATA 58.763 50.000 0.00 0.00 0.00 2.74
2253 5054 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2256 5057 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2257 5058 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2258 5059 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2259 5060 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2260 5061 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2261 5062 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2262 5063 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2263 5064 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2264 5065 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2265 5066 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
2266 5067 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
2269 5070 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
2290 5091 5.978934 CACTGTAGTGTTAAAAACGTCCT 57.021 39.130 3.88 0.00 40.96 3.85
2291 5092 6.354039 CACTGTAGTGTTAAAAACGTCCTT 57.646 37.500 3.88 0.00 40.96 3.36
2293 5094 8.080083 CACTGTAGTGTTAAAAACGTCCTTAT 57.920 34.615 3.88 0.00 40.96 1.73
2294 5095 9.195411 CACTGTAGTGTTAAAAACGTCCTTATA 57.805 33.333 3.88 0.00 40.96 0.98
2300 5277 9.902196 AGTGTTAAAAACGTCCTTATATTTTGG 57.098 29.630 0.00 0.00 0.00 3.28
2301 5278 9.131416 GTGTTAAAAACGTCCTTATATTTTGGG 57.869 33.333 0.00 0.00 0.00 4.12
2305 5282 6.753107 AAACGTCCTTATATTTTGGGACAG 57.247 37.500 10.84 6.55 45.94 3.51
2311 5288 5.369699 TCCTTATATTTTGGGACAGAGGGAG 59.630 44.000 0.00 0.00 42.39 4.30
2315 5292 1.652947 TTTGGGACAGAGGGAGTACC 58.347 55.000 0.00 0.00 42.39 3.34
2345 5322 9.185192 CAAAGAAAAAGGCTTCATACTTAACAG 57.815 33.333 0.00 0.00 0.00 3.16
2351 5328 6.128138 AGGCTTCATACTTAACAGGAAACT 57.872 37.500 0.00 0.00 46.44 2.66
2378 5441 6.811253 TTGTGCGGTATAAAAAGACATTCT 57.189 33.333 0.00 0.00 0.00 2.40
2379 5442 6.176975 TGTGCGGTATAAAAAGACATTCTG 57.823 37.500 0.00 0.00 0.00 3.02
2468 5710 9.958180 TCTTGATATTTCAGGTGATAACAAGAA 57.042 29.630 11.27 0.00 41.03 2.52
2634 5877 1.906574 ACCGATCCAGAGGTAAGCAAA 59.093 47.619 0.00 0.00 39.30 3.68
2685 5928 1.377202 GTGCAAAGGCCGGAGATGA 60.377 57.895 5.05 0.00 40.13 2.92
2759 6018 5.940470 CAGGAGCCACTAGTTTTGTTAGATT 59.060 40.000 0.00 0.00 0.00 2.40
2842 6105 6.918022 GGGTCAATATAAACATTGCACTTAGC 59.082 38.462 0.00 0.00 45.96 3.09
2864 6127 1.734465 CCGCAAAGAAAAGCTCGAGAT 59.266 47.619 18.75 7.13 0.00 2.75
2879 6142 0.869454 GAGATTCGTGAGCTGCTCCG 60.869 60.000 25.61 25.15 0.00 4.63
2886 6149 1.291132 GTGAGCTGCTCCGGATTAAC 58.709 55.000 25.61 12.11 0.00 2.01
2891 6154 2.101582 AGCTGCTCCGGATTAACTAGTG 59.898 50.000 3.57 0.00 0.00 2.74
2900 6163 6.335777 TCCGGATTAACTAGTGTTTTAGCTC 58.664 40.000 0.00 0.00 37.59 4.09
2906 6169 4.080969 ACTAGTGTTTTAGCTCGACTCG 57.919 45.455 0.00 0.00 0.00 4.18
2909 6172 3.306818 AGTGTTTTAGCTCGACTCGAAC 58.693 45.455 2.16 0.00 34.74 3.95
2948 6211 4.611943 TGAGCACTTTATGTAGCTCGATC 58.388 43.478 8.51 0.00 44.75 3.69
2957 6220 7.602644 ACTTTATGTAGCTCGATCAAGAAACAA 59.397 33.333 0.00 0.00 0.00 2.83
2961 6224 5.758296 TGTAGCTCGATCAAGAAACAAACTT 59.242 36.000 0.00 0.00 0.00 2.66
2978 6241 7.759489 ACAAACTTATCTTGAGCCAACATTA 57.241 32.000 0.00 0.00 0.00 1.90
2980 6243 6.442513 AACTTATCTTGAGCCAACATTAGC 57.557 37.500 0.00 0.00 0.00 3.09
2999 6262 3.406764 AGCTCACTTGGTTTTAGCTCAG 58.593 45.455 0.00 0.00 39.23 3.35
3141 6415 9.593134 CTTAACTAAGCATAGAGAGAAATGTGT 57.407 33.333 2.38 0.00 33.15 3.72
3142 6416 7.840342 AACTAAGCATAGAGAGAAATGTGTG 57.160 36.000 2.38 0.00 33.15 3.82
3189 6463 6.097356 GTCAGTCGTGTGTTAAATATCCTGA 58.903 40.000 0.00 0.00 0.00 3.86
3190 6464 6.253727 GTCAGTCGTGTGTTAAATATCCTGAG 59.746 42.308 0.00 0.00 0.00 3.35
3192 6466 6.590292 CAGTCGTGTGTTAAATATCCTGAGTT 59.410 38.462 0.00 0.00 0.00 3.01
3256 6530 7.605309 TGCTAGTTCATCCATAATATGCTTCTG 59.395 37.037 0.00 0.00 0.00 3.02
3273 6547 5.191722 TGCTTCTGTTAAATACTCCCTCCAT 59.808 40.000 0.00 0.00 0.00 3.41
3274 6548 5.760743 GCTTCTGTTAAATACTCCCTCCATC 59.239 44.000 0.00 0.00 0.00 3.51
3275 6549 5.888982 TCTGTTAAATACTCCCTCCATCC 57.111 43.478 0.00 0.00 0.00 3.51
3276 6550 4.344102 TCTGTTAAATACTCCCTCCATCCG 59.656 45.833 0.00 0.00 0.00 4.18
3277 6551 3.389983 TGTTAAATACTCCCTCCATCCGG 59.610 47.826 0.00 0.00 0.00 5.14
3278 6552 2.489528 AAATACTCCCTCCATCCGGA 57.510 50.000 6.61 6.61 39.79 5.14
3279 6553 2.489528 AATACTCCCTCCATCCGGAA 57.510 50.000 9.01 0.00 42.21 4.30
3280 6554 2.489528 ATACTCCCTCCATCCGGAAA 57.510 50.000 9.01 0.00 42.21 3.13
3281 6555 2.489528 TACTCCCTCCATCCGGAAAT 57.510 50.000 9.01 0.00 42.21 2.17
3282 6556 2.489528 ACTCCCTCCATCCGGAAATA 57.510 50.000 9.01 0.00 42.21 1.40
3283 6557 2.047830 ACTCCCTCCATCCGGAAATAC 58.952 52.381 9.01 0.00 42.21 1.89
3284 6558 2.330216 CTCCCTCCATCCGGAAATACT 58.670 52.381 9.01 0.00 42.21 2.12
3286 6560 1.000955 CCCTCCATCCGGAAATACTCG 59.999 57.143 9.01 0.00 42.21 4.18
3287 6561 1.687123 CCTCCATCCGGAAATACTCGT 59.313 52.381 9.01 0.00 42.21 4.18
3288 6562 2.288273 CCTCCATCCGGAAATACTCGTC 60.288 54.545 9.01 0.00 42.21 4.20
3290 6564 1.602165 CCATCCGGAAATACTCGTCGG 60.602 57.143 9.01 0.00 41.80 4.79
3291 6565 3.173540 TCCGGAAATACTCGTCGGA 57.826 52.632 0.00 0.00 46.06 4.55
3293 6567 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30
3294 6568 1.019673 CGGAAATACTCGTCGGAGGA 58.980 55.000 0.00 0.00 44.93 3.71
3295 6569 1.402968 CGGAAATACTCGTCGGAGGAA 59.597 52.381 1.73 0.00 44.93 3.36
3296 6570 2.034305 CGGAAATACTCGTCGGAGGAAT 59.966 50.000 1.73 0.00 44.93 3.01
3297 6571 3.381949 GGAAATACTCGTCGGAGGAATG 58.618 50.000 1.73 0.00 44.93 2.67
3298 6572 3.381949 GAAATACTCGTCGGAGGAATGG 58.618 50.000 1.73 0.00 44.93 3.16
3299 6573 2.359981 ATACTCGTCGGAGGAATGGA 57.640 50.000 1.73 0.00 44.93 3.41
3300 6574 2.359981 TACTCGTCGGAGGAATGGAT 57.640 50.000 1.73 0.00 44.93 3.41
3303 6577 1.954382 CTCGTCGGAGGAATGGATGTA 59.046 52.381 1.73 0.00 36.61 2.29
3305 6579 2.557056 TCGTCGGAGGAATGGATGTATC 59.443 50.000 0.00 0.00 0.00 2.24
3306 6580 2.558795 CGTCGGAGGAATGGATGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
3307 6581 3.756963 CGTCGGAGGAATGGATGTATCTA 59.243 47.826 0.00 0.00 0.00 1.98
3308 6582 4.142578 CGTCGGAGGAATGGATGTATCTAG 60.143 50.000 0.00 0.00 0.00 2.43
3310 6584 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
3313 6587 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
3315 6589 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
3354 6628 9.573133 ACATTCATTTTTATCCATTTCTTCGAC 57.427 29.630 0.00 0.00 0.00 4.20
3357 6631 9.624697 TTCATTTTTATCCATTTCTTCGACAAG 57.375 29.630 0.00 0.00 0.00 3.16
3358 6632 8.792633 TCATTTTTATCCATTTCTTCGACAAGT 58.207 29.630 0.00 0.00 0.00 3.16
3364 6638 6.737254 TCCATTTCTTCGACAAGTATTTCC 57.263 37.500 0.00 0.00 0.00 3.13
3367 6641 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
3368 6642 3.841643 TCTTCGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
3369 6643 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
3371 6645 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3372 6646 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3373 6647 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3374 6648 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3375 6649 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3376 6650 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3377 6651 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3378 6652 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3379 6653 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
3381 6655 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
3389 6663 4.551671 ACGGAGGGAGTACTACTAGTCTA 58.448 47.826 4.77 0.00 0.00 2.59
3391 6665 4.343526 CGGAGGGAGTACTACTAGTCTACA 59.656 50.000 4.77 0.00 0.00 2.74
3580 6855 1.865970 CTATCTCGAGACCGTTACGCT 59.134 52.381 19.30 0.39 37.05 5.07
3581 6856 0.377554 ATCTCGAGACCGTTACGCTG 59.622 55.000 19.30 0.00 37.05 5.18
3582 6857 1.868251 CTCGAGACCGTTACGCTGC 60.868 63.158 6.58 0.00 37.05 5.25
3583 6858 3.238241 CGAGACCGTTACGCTGCG 61.238 66.667 21.91 21.91 0.00 5.18
3605 6882 1.755384 GGGCCACCCTGTATAGCTC 59.245 63.158 4.39 0.00 41.34 4.09
3606 6883 1.054406 GGGCCACCCTGTATAGCTCA 61.054 60.000 4.39 0.00 41.34 4.26
3639 6916 0.795085 CTCAGTTTGAGCTTGCTCGG 59.205 55.000 16.48 5.28 37.72 4.63
3652 6935 3.437049 GCTTGCTCGGATTTAAGTTGAGT 59.563 43.478 0.00 0.00 0.00 3.41
3666 6949 4.640771 AGTTGAGTTGAGCCTATTCCAA 57.359 40.909 0.00 0.00 0.00 3.53
3667 6950 4.985538 AGTTGAGTTGAGCCTATTCCAAA 58.014 39.130 0.00 0.00 0.00 3.28
3694 6977 1.303091 AACTTGTATCGGTTGCGGCC 61.303 55.000 0.00 0.00 0.00 6.13
3699 6982 1.144496 TATCGGTTGCGGCCCTAAC 59.856 57.895 0.00 2.25 0.00 2.34
3728 7011 9.442033 CACTATGTGCAAATATAAGAACACATG 57.558 33.333 14.76 8.51 45.50 3.21
3812 7095 6.006449 AGGACATCATACTTCAACAGCTTTT 58.994 36.000 0.00 0.00 0.00 2.27
3814 7097 6.150140 GGACATCATACTTCAACAGCTTTTCT 59.850 38.462 0.00 0.00 0.00 2.52
3820 7103 3.384789 ACTTCAACAGCTTTTCTTTCCCC 59.615 43.478 0.00 0.00 0.00 4.81
3821 7104 2.316108 TCAACAGCTTTTCTTTCCCCC 58.684 47.619 0.00 0.00 0.00 5.40
3865 7148 4.000988 AGTTGGCACTAAAACATACTCCG 58.999 43.478 0.00 0.00 0.00 4.63
3875 7158 3.460857 AACATACTCCGGCAGATTCTC 57.539 47.619 0.00 0.00 0.00 2.87
3904 7187 8.339344 TCTCAATATTTTCTGCTGATCACAAA 57.661 30.769 0.00 0.00 0.00 2.83
3906 7189 8.746922 TCAATATTTTCTGCTGATCACAAAAC 57.253 30.769 0.00 0.00 27.93 2.43
3914 7197 2.362077 GCTGATCACAAAACAACACCCT 59.638 45.455 0.00 0.00 0.00 4.34
3959 7246 3.448093 TCTTTCCCAATACATGCCACA 57.552 42.857 0.00 0.00 0.00 4.17
3994 7281 2.357034 CCGTTGGACCACCGTCAG 60.357 66.667 10.77 0.00 41.13 3.51
4002 7289 0.889306 GACCACCGTCAGTTCTAGCT 59.111 55.000 0.00 0.00 38.99 3.32
4003 7290 2.089980 GACCACCGTCAGTTCTAGCTA 58.910 52.381 0.00 0.00 38.99 3.32
4024 7311 1.623542 GGGACTGCTACCGGACCATT 61.624 60.000 9.46 0.00 34.37 3.16
4025 7312 0.462047 GGACTGCTACCGGACCATTG 60.462 60.000 9.46 0.00 33.15 2.82
4037 7324 4.101790 CCATTGTGTCGCCACCGC 62.102 66.667 0.00 0.00 41.09 5.68
4041 7328 4.617520 TGTGTCGCCACCGCATGT 62.618 61.111 0.00 0.00 41.09 3.21
4043 7330 4.306967 TGTCGCCACCGCATGTCA 62.307 61.111 0.00 0.00 34.03 3.58
4044 7331 3.788766 GTCGCCACCGCATGTCAC 61.789 66.667 0.00 0.00 34.03 3.67
4051 7338 4.758251 CCGCATGTCACCGCTGGA 62.758 66.667 1.50 0.00 0.00 3.86
4052 7339 2.512286 CGCATGTCACCGCTGGAT 60.512 61.111 1.50 0.00 0.00 3.41
4053 7340 2.816360 CGCATGTCACCGCTGGATG 61.816 63.158 1.50 0.00 0.00 3.51
4055 7342 2.124570 ATGTCACCGCTGGATGCC 60.125 61.111 1.50 0.00 38.78 4.40
4059 7346 4.738998 CACCGCTGGATGCCCCAA 62.739 66.667 1.50 0.00 46.07 4.12
4078 8032 6.611381 CCCCAACTTATATGCATCAATTACG 58.389 40.000 0.19 0.00 0.00 3.18
4100 8055 6.293698 ACGAAATTTATATACCCCACTGTCC 58.706 40.000 0.00 0.00 0.00 4.02
4102 8057 6.768861 CGAAATTTATATACCCCACTGTCCAA 59.231 38.462 0.00 0.00 0.00 3.53
4103 8058 7.283580 CGAAATTTATATACCCCACTGTCCAAA 59.716 37.037 0.00 0.00 0.00 3.28
4105 8060 9.500701 AAATTTATATACCCCACTGTCCAAATT 57.499 29.630 0.00 0.00 0.00 1.82
4107 8062 8.983702 TTTATATACCCCACTGTCCAAATTAC 57.016 34.615 0.00 0.00 0.00 1.89
4110 8065 3.496331 ACCCCACTGTCCAAATTACTTG 58.504 45.455 0.00 0.00 34.52 3.16
4112 8067 3.506067 CCCCACTGTCCAAATTACTTGTC 59.494 47.826 0.00 0.00 32.65 3.18
4115 8070 3.498397 CACTGTCCAAATTACTTGTCGCT 59.502 43.478 0.00 0.00 32.65 4.93
4116 8071 4.024048 CACTGTCCAAATTACTTGTCGCTT 60.024 41.667 0.00 0.00 32.65 4.68
4120 8075 7.040686 ACTGTCCAAATTACTTGTCGCTTAAAT 60.041 33.333 0.00 0.00 32.65 1.40
4121 8076 7.081349 TGTCCAAATTACTTGTCGCTTAAATG 58.919 34.615 0.00 0.00 32.65 2.32
4122 8077 6.526674 GTCCAAATTACTTGTCGCTTAAATGG 59.473 38.462 0.00 0.00 32.65 3.16
4124 8079 7.122055 TCCAAATTACTTGTCGCTTAAATGGAT 59.878 33.333 0.00 0.00 32.65 3.41
4125 8080 7.220683 CCAAATTACTTGTCGCTTAAATGGATG 59.779 37.037 0.00 0.00 32.65 3.51
4127 8082 8.500753 AATTACTTGTCGCTTAAATGGATGTA 57.499 30.769 0.00 0.00 0.00 2.29
4129 8084 6.604735 ACTTGTCGCTTAAATGGATGTATC 57.395 37.500 0.00 0.00 0.00 2.24
4130 8085 6.349300 ACTTGTCGCTTAAATGGATGTATCT 58.651 36.000 0.00 0.00 0.00 1.98
4131 8086 7.497595 ACTTGTCGCTTAAATGGATGTATCTA 58.502 34.615 0.00 0.00 0.00 1.98
4132 8087 7.653713 ACTTGTCGCTTAAATGGATGTATCTAG 59.346 37.037 0.00 0.00 0.00 2.43
4133 8088 5.926542 TGTCGCTTAAATGGATGTATCTAGC 59.073 40.000 0.00 0.00 0.00 3.42
4134 8089 5.926542 GTCGCTTAAATGGATGTATCTAGCA 59.073 40.000 0.00 0.00 0.00 3.49
4135 8090 5.926542 TCGCTTAAATGGATGTATCTAGCAC 59.073 40.000 0.00 0.00 0.00 4.40
4136 8091 5.696270 CGCTTAAATGGATGTATCTAGCACA 59.304 40.000 0.00 0.22 0.00 4.57
4137 8092 6.202762 CGCTTAAATGGATGTATCTAGCACAA 59.797 38.462 1.72 0.00 0.00 3.33
4138 8093 7.254761 CGCTTAAATGGATGTATCTAGCACAAA 60.255 37.037 1.72 0.00 0.00 2.83
4184 8159 6.262193 TCGTGCGGAATTATGTCTATCATA 57.738 37.500 0.00 0.00 37.91 2.15
4185 8160 6.090783 TCGTGCGGAATTATGTCTATCATAC 58.909 40.000 0.00 0.00 38.55 2.39
4192 8167 8.650714 CGGAATTATGTCTATCATACACACATG 58.349 37.037 0.00 0.00 38.55 3.21
4255 11127 2.282391 AATGTGCTCAAGGCCGCA 60.282 55.556 0.00 0.00 40.92 5.69
4261 11133 2.124819 CTCAAGGCCGCATCTGCT 60.125 61.111 0.00 0.00 39.32 4.24
4331 11203 2.399607 AACCCCAAAGACTGGCCCA 61.400 57.895 0.00 0.00 44.90 5.36
4332 11204 2.036256 CCCCAAAGACTGGCCCAG 59.964 66.667 9.83 9.83 44.90 4.45
4353 11225 2.425312 GAGGCAAGATCAGAGACGAGAA 59.575 50.000 0.00 0.00 0.00 2.87
4354 11226 3.030291 AGGCAAGATCAGAGACGAGAAT 58.970 45.455 0.00 0.00 0.00 2.40
4408 13034 9.515226 AGCAATGAGGTAATAACAACTTAAGAA 57.485 29.630 10.09 0.00 0.00 2.52
4409 13035 9.556030 GCAATGAGGTAATAACAACTTAAGAAC 57.444 33.333 10.09 0.00 0.00 3.01
4421 13047 2.478894 ACTTAAGAACCAACGTGCGATG 59.521 45.455 10.09 0.00 0.00 3.84
4463 13099 1.805943 TCTATCCAAACACGACGACGA 59.194 47.619 15.32 0.00 42.66 4.20
4591 13232 1.042559 CCCTGCACTGGTGTTTGGTT 61.043 55.000 2.64 0.00 0.00 3.67
4599 13240 1.605710 CTGGTGTTTGGTTCTCTGCTG 59.394 52.381 0.00 0.00 0.00 4.41
4690 13779 4.272489 TCACACATTTGAGATCATTCCCC 58.728 43.478 0.00 0.00 0.00 4.81
4705 13794 1.187974 TCCCCGCTCTTGATTCGTTA 58.812 50.000 0.00 0.00 0.00 3.18
4830 13930 2.023461 CTGCTCTACGAGACGCCG 59.977 66.667 0.00 0.00 0.00 6.46
4831 13931 2.745100 TGCTCTACGAGACGCCGT 60.745 61.111 0.00 0.00 45.54 5.68
4832 13932 2.023041 GCTCTACGAGACGCCGTC 59.977 66.667 9.71 9.71 43.20 4.79
4848 13948 4.091939 TCGGCTGCAGCAGAGCAT 62.092 61.111 37.63 0.00 44.68 3.79
4849 13949 3.877357 CGGCTGCAGCAGAGCATG 61.877 66.667 37.63 15.15 44.68 4.06
4850 13950 2.750637 GGCTGCAGCAGAGCATGT 60.751 61.111 37.63 0.00 44.68 3.21
4851 13951 1.450848 GGCTGCAGCAGAGCATGTA 60.451 57.895 37.63 0.00 44.68 2.29
4852 13952 1.712977 GGCTGCAGCAGAGCATGTAC 61.713 60.000 37.63 14.35 44.68 2.90
4853 13953 1.712977 GCTGCAGCAGAGCATGTACC 61.713 60.000 33.36 0.52 44.68 3.34
4854 13954 1.078214 TGCAGCAGAGCATGTACCC 60.078 57.895 0.00 0.00 40.11 3.69
4855 13955 1.222936 GCAGCAGAGCATGTACCCT 59.777 57.895 0.00 0.00 0.00 4.34
4856 13956 1.094073 GCAGCAGAGCATGTACCCTG 61.094 60.000 0.00 0.00 0.00 4.45
4857 13957 0.463295 CAGCAGAGCATGTACCCTGG 60.463 60.000 0.00 0.00 0.00 4.45
4858 13958 1.153086 GCAGAGCATGTACCCTGGG 60.153 63.158 12.28 12.28 0.00 4.45
4859 13959 1.153086 CAGAGCATGTACCCTGGGC 60.153 63.158 14.08 0.00 0.00 5.36
4860 13960 2.203070 GAGCATGTACCCTGGGCG 60.203 66.667 14.08 0.00 0.00 6.13
4861 13961 4.489771 AGCATGTACCCTGGGCGC 62.490 66.667 14.08 8.08 0.00 6.53
4863 13963 4.108299 CATGTACCCTGGGCGCCA 62.108 66.667 30.85 13.75 0.00 5.69
4864 13964 4.109675 ATGTACCCTGGGCGCCAC 62.110 66.667 30.85 17.34 0.00 5.01
4994 14101 1.957668 TCCCGTGATGATTCAGCATG 58.042 50.000 15.56 15.56 36.65 4.06
5079 14211 0.994247 TGACATGGATCACCCTGCTT 59.006 50.000 0.00 0.00 35.66 3.91
5180 14312 2.045926 CGGGAGGCAGGGTTTCTG 60.046 66.667 0.00 0.00 46.03 3.02
5253 14386 6.473397 ACAAAATCTAGCGTCAAGAAAGAG 57.527 37.500 0.00 0.00 0.00 2.85
5379 14888 3.869065 TCTAAGACCCGCAACAATAAGG 58.131 45.455 0.00 0.00 0.00 2.69
5382 14891 1.073284 AGACCCGCAACAATAAGGTGT 59.927 47.619 0.00 0.00 37.23 4.16
5385 18338 1.741145 CCCGCAACAATAAGGTGTACC 59.259 52.381 0.00 0.00 37.23 3.34
5436 18389 0.740737 ATAATTTGCAGGTGGCTCGC 59.259 50.000 0.00 0.00 45.15 5.03
5521 18492 8.954950 TTATCCAGCAAAAGAAAAATGAAACA 57.045 26.923 0.00 0.00 0.00 2.83
5643 18632 2.351726 GCACGTCACTGTCTTCAAAAGT 59.648 45.455 0.00 0.00 0.00 2.66
5805 18794 1.003696 GCACTTGAGGGTTAAGGCTCT 59.996 52.381 0.00 0.00 0.00 4.09
5864 18853 9.160496 GACTTAATGTTGTGATCATCTCTTCTT 57.840 33.333 0.00 0.00 0.00 2.52
6191 19549 5.505654 CGCTTGTATGAGTTTGACCAAAAGT 60.506 40.000 0.00 0.00 33.95 2.66
6193 19551 6.756542 GCTTGTATGAGTTTGACCAAAAGTTT 59.243 34.615 0.00 0.00 31.28 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 257 6.011981 TGTTGAGTAGAAAGATTGGGGGTTAT 60.012 38.462 0.00 0.00 0.00 1.89
513 521 2.612115 CACCCCTCAAGCTCCCCT 60.612 66.667 0.00 0.00 0.00 4.79
581 591 0.396556 GTCCCACCCCACACACTTTT 60.397 55.000 0.00 0.00 0.00 2.27
832 843 3.693578 TGTTCTGACTCATTGTGCAAACA 59.306 39.130 0.00 0.00 0.00 2.83
840 851 7.805071 GGACAAAATTACTGTTCTGACTCATTG 59.195 37.037 0.00 0.00 0.00 2.82
841 852 7.307989 CGGACAAAATTACTGTTCTGACTCATT 60.308 37.037 0.00 0.00 0.00 2.57
843 854 5.465390 CGGACAAAATTACTGTTCTGACTCA 59.535 40.000 0.00 0.00 0.00 3.41
872 883 1.214589 GTGGATGTAGACGTGCGGT 59.785 57.895 0.00 0.00 0.00 5.68
885 896 6.884280 ACGAAAAAGAAGAAATGAGTGGAT 57.116 33.333 0.00 0.00 0.00 3.41
924 943 1.945394 CGCGGCCTTAAGTAGTAGAGA 59.055 52.381 0.00 0.00 0.00 3.10
929 948 0.384669 CTAGCGCGGCCTTAAGTAGT 59.615 55.000 8.83 0.00 0.00 2.73
946 965 1.003580 CTGCTCCACCCTTCTTTGCTA 59.996 52.381 0.00 0.00 0.00 3.49
950 969 1.065854 CGATCTGCTCCACCCTTCTTT 60.066 52.381 0.00 0.00 0.00 2.52
959 978 3.838271 GCCGGTCGATCTGCTCCA 61.838 66.667 4.66 0.00 0.00 3.86
986 1005 2.278792 TCATGGTCGCGCTGATCG 60.279 61.111 5.56 0.00 42.12 3.69
1003 1022 0.813610 CACACCGTCACACATGTGGT 60.814 55.000 28.64 14.47 45.65 4.16
1202 2419 5.007385 AGCGTGGGTTTGTATCTACTAAG 57.993 43.478 0.00 0.00 0.00 2.18
1216 2433 2.038557 CCCTAGCATTTATAGCGTGGGT 59.961 50.000 0.00 0.00 41.28 4.51
1228 2445 5.422145 CAAATTAGCAAAAGCCCTAGCATT 58.578 37.500 0.00 0.00 43.56 3.56
1232 2449 5.659440 TTCCAAATTAGCAAAAGCCCTAG 57.341 39.130 0.00 0.00 0.00 3.02
1233 2450 5.542251 AGTTTCCAAATTAGCAAAAGCCCTA 59.458 36.000 0.00 0.00 0.00 3.53
1236 2453 7.441157 ACTTAAGTTTCCAAATTAGCAAAAGCC 59.559 33.333 1.12 0.00 0.00 4.35
1238 2455 8.978539 GGACTTAAGTTTCCAAATTAGCAAAAG 58.021 33.333 10.02 0.00 0.00 2.27
1239 2456 7.929245 GGGACTTAAGTTTCCAAATTAGCAAAA 59.071 33.333 10.02 0.00 33.01 2.44
1240 2457 7.070074 TGGGACTTAAGTTTCCAAATTAGCAAA 59.930 33.333 21.80 3.12 33.01 3.68
1244 2495 7.178451 ACCATGGGACTTAAGTTTCCAAATTAG 59.822 37.037 25.40 17.46 36.06 1.73
1256 2507 5.429130 GTCCTCTTTACCATGGGACTTAAG 58.571 45.833 18.09 8.69 42.04 1.85
1264 2515 6.884832 TGTACAATAGTCCTCTTTACCATGG 58.115 40.000 11.19 11.19 0.00 3.66
1265 2516 8.830580 CATTGTACAATAGTCCTCTTTACCATG 58.169 37.037 20.39 0.46 0.00 3.66
1266 2517 7.993183 CCATTGTACAATAGTCCTCTTTACCAT 59.007 37.037 20.39 0.00 0.00 3.55
1268 2519 7.336396 ACCATTGTACAATAGTCCTCTTTACC 58.664 38.462 20.39 0.00 0.00 2.85
1269 2520 8.788325 AACCATTGTACAATAGTCCTCTTTAC 57.212 34.615 20.39 0.00 0.00 2.01
1271 2522 9.975218 ATAAACCATTGTACAATAGTCCTCTTT 57.025 29.630 20.39 12.17 0.00 2.52
1274 2525 7.282224 TGCATAAACCATTGTACAATAGTCCTC 59.718 37.037 20.39 8.67 0.00 3.71
1275 2526 7.116075 TGCATAAACCATTGTACAATAGTCCT 58.884 34.615 20.39 12.39 0.00 3.85
1276 2527 7.328277 TGCATAAACCATTGTACAATAGTCC 57.672 36.000 20.39 7.50 0.00 3.85
1277 2528 7.862372 CCATGCATAAACCATTGTACAATAGTC 59.138 37.037 20.39 8.05 0.00 2.59
1279 2530 7.939782 TCCATGCATAAACCATTGTACAATAG 58.060 34.615 20.39 15.92 0.00 1.73
1280 2531 7.888250 TCCATGCATAAACCATTGTACAATA 57.112 32.000 20.39 5.64 0.00 1.90
1282 2533 6.788598 ATCCATGCATAAACCATTGTACAA 57.211 33.333 11.41 11.41 0.00 2.41
1283 2534 7.884257 CATATCCATGCATAAACCATTGTACA 58.116 34.615 0.00 0.00 0.00 2.90
1329 2580 2.102925 TGCTGGTATGATCGCATCTCAA 59.897 45.455 0.00 0.00 35.94 3.02
1332 2583 1.690893 AGTGCTGGTATGATCGCATCT 59.309 47.619 0.00 0.00 35.94 2.90
1349 2600 2.163818 TGAGTTCCGGTGCTTTAGTG 57.836 50.000 0.00 0.00 0.00 2.74
1364 2616 5.635700 GCTTAACTTCGAAGTTCTGATGAGT 59.364 40.000 39.03 19.94 45.65 3.41
1365 2617 5.635280 TGCTTAACTTCGAAGTTCTGATGAG 59.365 40.000 39.03 27.11 45.65 2.90
1366 2618 5.538118 TGCTTAACTTCGAAGTTCTGATGA 58.462 37.500 39.03 22.48 45.65 2.92
1375 2627 4.398247 GTCAAGCATGCTTAACTTCGAAG 58.602 43.478 31.48 23.43 34.50 3.79
1377 2629 2.411748 CGTCAAGCATGCTTAACTTCGA 59.588 45.455 31.48 20.31 34.50 3.71
1421 2678 1.742831 TGCGGTGATGGTTGCTTTATC 59.257 47.619 0.00 0.00 0.00 1.75
1470 2901 4.182433 TTGAGTGCGGTGGTGGCA 62.182 61.111 0.00 0.00 38.25 4.92
1492 2929 4.398044 CCTTTATATCTTGCGTTGGGTGTT 59.602 41.667 0.00 0.00 0.00 3.32
1501 2939 5.006746 GTGTCCTTCACCTTTATATCTTGCG 59.993 44.000 0.00 0.00 40.84 4.85
1518 2958 1.470051 GTTGGTGTGTTGGTGTCCTT 58.530 50.000 0.00 0.00 0.00 3.36
1519 2959 0.395173 GGTTGGTGTGTTGGTGTCCT 60.395 55.000 0.00 0.00 0.00 3.85
1591 3203 2.032981 CACTGGTGGTGGTCTTTGC 58.967 57.895 0.00 0.00 41.90 3.68
1605 3331 1.137675 TCTCCTTGATGGATCGCACTG 59.862 52.381 0.00 0.00 45.16 3.66
1634 3443 2.270205 CCTGCTCCGACATTGGCT 59.730 61.111 0.00 0.00 0.00 4.75
1711 3626 1.534729 GGGTGAAAACTTGATCCGCT 58.465 50.000 0.00 0.00 0.00 5.52
1926 4367 1.002134 AGGCGTGTTGATCTTGGGG 60.002 57.895 0.00 0.00 0.00 4.96
1980 4421 1.123077 CCCCTTCGATGGTCTCATGA 58.877 55.000 15.59 0.00 32.98 3.07
2026 4468 2.280321 CGGTTCCGTCGGTGGTTT 60.280 61.111 11.88 0.00 0.00 3.27
2035 4477 2.264794 GATCACTGCCGGTTCCGT 59.735 61.111 1.90 0.00 0.00 4.69
2129 4573 2.727123 TGCTTGAGGTCACTTTCCAA 57.273 45.000 0.00 0.00 0.00 3.53
2133 4577 1.160137 GCGATGCTTGAGGTCACTTT 58.840 50.000 0.00 0.00 0.00 2.66
2134 4578 0.674895 GGCGATGCTTGAGGTCACTT 60.675 55.000 0.00 0.00 0.00 3.16
2136 4580 1.364626 CTGGCGATGCTTGAGGTCAC 61.365 60.000 0.00 0.00 0.00 3.67
2139 4583 0.613260 TAACTGGCGATGCTTGAGGT 59.387 50.000 0.00 0.00 0.00 3.85
2140 4584 1.667724 CTTAACTGGCGATGCTTGAGG 59.332 52.381 0.00 0.00 0.00 3.86
2141 4585 1.063174 GCTTAACTGGCGATGCTTGAG 59.937 52.381 0.00 0.00 0.00 3.02
2142 4586 1.086696 GCTTAACTGGCGATGCTTGA 58.913 50.000 0.00 0.00 0.00 3.02
2143 4587 0.804364 TGCTTAACTGGCGATGCTTG 59.196 50.000 0.00 0.00 0.00 4.01
2144 4588 1.402968 CATGCTTAACTGGCGATGCTT 59.597 47.619 0.00 0.00 0.00 3.91
2146 4590 0.734889 ACATGCTTAACTGGCGATGC 59.265 50.000 0.00 0.00 0.00 3.91
2147 4591 3.173599 CAAACATGCTTAACTGGCGATG 58.826 45.455 0.00 0.00 0.00 3.84
2148 4592 2.415893 GCAAACATGCTTAACTGGCGAT 60.416 45.455 0.00 0.00 0.00 4.58
2149 4593 1.068610 GCAAACATGCTTAACTGGCGA 60.069 47.619 0.00 0.00 0.00 5.54
2150 4594 1.339711 GCAAACATGCTTAACTGGCG 58.660 50.000 0.00 0.00 0.00 5.69
2152 4596 2.031245 TCACGCAAACATGCTTAACTGG 60.031 45.455 0.00 0.00 0.00 4.00
2153 4597 3.058983 TCTCACGCAAACATGCTTAACTG 60.059 43.478 0.00 0.00 0.00 3.16
2154 4598 3.138304 TCTCACGCAAACATGCTTAACT 58.862 40.909 0.00 0.00 0.00 2.24
2155 4599 3.058914 ACTCTCACGCAAACATGCTTAAC 60.059 43.478 0.00 0.00 0.00 2.01
2156 4600 3.138304 ACTCTCACGCAAACATGCTTAA 58.862 40.909 0.00 0.00 0.00 1.85
2157 4601 2.766313 ACTCTCACGCAAACATGCTTA 58.234 42.857 0.00 0.00 0.00 3.09
2158 4602 1.597742 ACTCTCACGCAAACATGCTT 58.402 45.000 0.00 0.00 0.00 3.91
2159 4603 2.289072 ACTACTCTCACGCAAACATGCT 60.289 45.455 0.00 0.00 0.00 3.79
2160 4604 2.069273 ACTACTCTCACGCAAACATGC 58.931 47.619 0.00 0.00 0.00 4.06
2161 4605 4.486090 AGTACTACTCTCACGCAAACATG 58.514 43.478 0.00 0.00 0.00 3.21
2164 4608 4.394300 TCCTAGTACTACTCTCACGCAAAC 59.606 45.833 0.00 0.00 0.00 2.93
2199 5000 6.203338 AGGAATGCAACACAATGATTTTTCAC 59.797 34.615 0.00 0.00 0.00 3.18
2222 5023 3.939592 GACGGAGGGAGTAATTCAAAAGG 59.060 47.826 0.00 0.00 0.00 3.11
2224 5025 3.307904 GGGACGGAGGGAGTAATTCAAAA 60.308 47.826 0.00 0.00 0.00 2.44
2239 5040 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2242 5043 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
2244 5045 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
2253 5054 6.996106 CACTACAGTGTCAAAAACGTTCTTA 58.004 36.000 0.00 0.00 40.96 2.10
2269 5070 9.933723 ATATAAGGACGTTTTTAACACTACAGT 57.066 29.630 0.00 0.00 0.00 3.55
2274 5075 9.902196 CCAAAATATAAGGACGTTTTTAACACT 57.098 29.630 0.00 0.00 0.00 3.55
2277 5078 9.345517 GTCCCAAAATATAAGGACGTTTTTAAC 57.654 33.333 0.00 0.00 39.47 2.01
2287 5088 5.293643 TCCCTCTGTCCCAAAATATAAGGA 58.706 41.667 0.00 0.00 0.00 3.36
2288 5089 5.132816 ACTCCCTCTGTCCCAAAATATAAGG 59.867 44.000 0.00 0.00 0.00 2.69
2289 5090 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
2290 5091 6.100714 GGTACTCCCTCTGTCCCAAAATATAA 59.899 42.308 0.00 0.00 0.00 0.98
2291 5092 5.605488 GGTACTCCCTCTGTCCCAAAATATA 59.395 44.000 0.00 0.00 0.00 0.86
2293 5094 3.778629 GGTACTCCCTCTGTCCCAAAATA 59.221 47.826 0.00 0.00 0.00 1.40
2294 5095 2.576648 GGTACTCCCTCTGTCCCAAAAT 59.423 50.000 0.00 0.00 0.00 1.82
2296 5273 1.151413 AGGTACTCCCTCTGTCCCAAA 59.849 52.381 0.00 0.00 40.71 3.28
2311 5288 2.552743 AGCCTTTTTCTTTGCGAGGTAC 59.447 45.455 0.00 0.00 0.00 3.34
2315 5292 3.354089 TGAAGCCTTTTTCTTTGCGAG 57.646 42.857 0.00 0.00 0.00 5.03
2317 5294 4.798574 AGTATGAAGCCTTTTTCTTTGCG 58.201 39.130 0.00 0.00 0.00 4.85
2318 5295 7.651704 TGTTAAGTATGAAGCCTTTTTCTTTGC 59.348 33.333 0.00 0.00 0.00 3.68
2319 5296 9.185192 CTGTTAAGTATGAAGCCTTTTTCTTTG 57.815 33.333 0.00 0.00 0.00 2.77
2320 5297 8.360390 CCTGTTAAGTATGAAGCCTTTTTCTTT 58.640 33.333 0.00 0.00 0.00 2.52
2322 5299 7.231467 TCCTGTTAAGTATGAAGCCTTTTTCT 58.769 34.615 0.00 0.00 0.00 2.52
2398 5461 9.935241 CTTCATGTATATTGTAGCCTATCTTGT 57.065 33.333 0.00 0.00 0.00 3.16
2399 5462 9.376075 CCTTCATGTATATTGTAGCCTATCTTG 57.624 37.037 0.00 0.00 0.00 3.02
2634 5877 4.016444 ACATCGCAAACCAGGTATGAAAT 58.984 39.130 6.33 0.00 0.00 2.17
2718 5977 4.202409 GCTCCTGCTATTTTAGGACCATCT 60.202 45.833 0.00 0.00 38.15 2.90
2727 5986 5.693769 AACTAGTGGCTCCTGCTATTTTA 57.306 39.130 0.00 0.00 39.59 1.52
2734 5993 1.897560 ACAAAACTAGTGGCTCCTGC 58.102 50.000 0.00 0.00 38.76 4.85
2816 6079 7.201821 GCTAAGTGCAATGTTTATATTGACCCT 60.202 37.037 3.73 0.00 39.79 4.34
2842 6105 1.793613 CGAGCTTTTCTTTGCGGCG 60.794 57.895 0.51 0.51 0.00 6.46
2845 6108 3.411751 GAATCTCGAGCTTTTCTTTGCG 58.588 45.455 7.81 0.00 0.00 4.85
2848 6111 4.307432 TCACGAATCTCGAGCTTTTCTTT 58.693 39.130 7.81 0.00 43.74 2.52
2864 6127 1.888436 AATCCGGAGCAGCTCACGAA 61.888 55.000 25.90 13.11 31.08 3.85
2873 6136 4.546829 AAACACTAGTTAATCCGGAGCA 57.453 40.909 11.34 0.00 36.84 4.26
2879 6142 7.034397 AGTCGAGCTAAAACACTAGTTAATCC 58.966 38.462 0.00 0.00 36.84 3.01
2886 6149 4.337985 TCGAGTCGAGCTAAAACACTAG 57.662 45.455 12.09 0.00 0.00 2.57
2891 6154 3.562505 TCTGTTCGAGTCGAGCTAAAAC 58.437 45.455 26.38 16.38 37.92 2.43
2900 6163 7.050281 ACTAAATTCATTTCTGTTCGAGTCG 57.950 36.000 6.09 6.09 0.00 4.18
2906 6169 9.495754 GTGCTCATACTAAATTCATTTCTGTTC 57.504 33.333 0.00 0.00 0.00 3.18
2948 6211 6.738114 TGGCTCAAGATAAGTTTGTTTCTTG 58.262 36.000 5.39 5.39 44.03 3.02
2957 6220 6.183347 AGCTAATGTTGGCTCAAGATAAGTT 58.817 36.000 0.00 0.00 41.45 2.66
2978 6241 3.181450 ACTGAGCTAAAACCAAGTGAGCT 60.181 43.478 0.00 0.00 45.94 4.09
2980 6243 8.723942 ATTATACTGAGCTAAAACCAAGTGAG 57.276 34.615 0.00 0.00 0.00 3.51
3115 6389 9.593134 ACACATTTCTCTCTATGCTTAGTTAAG 57.407 33.333 6.53 3.79 36.40 1.85
3116 6390 9.371136 CACACATTTCTCTCTATGCTTAGTTAA 57.629 33.333 6.53 0.00 0.00 2.01
3118 6392 6.314896 GCACACATTTCTCTCTATGCTTAGTT 59.685 38.462 6.53 0.00 0.00 2.24
3120 6394 5.236047 GGCACACATTTCTCTCTATGCTTAG 59.764 44.000 0.14 0.14 32.44 2.18
3121 6395 5.104776 AGGCACACATTTCTCTCTATGCTTA 60.105 40.000 0.00 0.00 32.44 3.09
3122 6396 3.944015 GGCACACATTTCTCTCTATGCTT 59.056 43.478 0.00 0.00 32.44 3.91
3123 6397 3.199508 AGGCACACATTTCTCTCTATGCT 59.800 43.478 0.00 0.00 32.44 3.79
3124 6398 3.539604 AGGCACACATTTCTCTCTATGC 58.460 45.455 0.00 0.00 0.00 3.14
3126 6400 5.627182 ATGAGGCACACATTTCTCTCTAT 57.373 39.130 0.00 0.00 35.84 1.98
3127 6401 5.426689 AATGAGGCACACATTTCTCTCTA 57.573 39.130 0.00 0.00 46.83 2.43
3128 6402 3.996921 ATGAGGCACACATTTCTCTCT 57.003 42.857 0.00 0.00 35.84 3.10
3129 6403 5.008415 CCATAATGAGGCACACATTTCTCTC 59.992 44.000 9.12 0.00 46.83 3.20
3130 6404 4.885907 CCATAATGAGGCACACATTTCTCT 59.114 41.667 9.12 0.00 46.83 3.10
3132 6406 4.603131 ACCATAATGAGGCACACATTTCT 58.397 39.130 9.12 0.00 46.83 2.52
3133 6407 4.989279 ACCATAATGAGGCACACATTTC 57.011 40.909 9.12 0.00 46.83 2.17
3134 6408 5.302568 CCATACCATAATGAGGCACACATTT 59.697 40.000 9.12 0.00 46.83 2.32
3137 6411 3.201930 ACCATACCATAATGAGGCACACA 59.798 43.478 0.00 0.00 0.00 3.72
3138 6412 3.820557 ACCATACCATAATGAGGCACAC 58.179 45.455 0.00 0.00 0.00 3.82
3139 6413 4.968259 GTACCATACCATAATGAGGCACA 58.032 43.478 0.00 0.00 0.00 4.57
3162 6436 5.291128 GGATATTTAACACACGACTGACCAG 59.709 44.000 0.00 0.00 0.00 4.00
3169 6443 6.963049 AACTCAGGATATTTAACACACGAC 57.037 37.500 0.00 0.00 0.00 4.34
3200 6474 1.748493 GTCCACTGTGAAACTTTGGCA 59.252 47.619 9.86 0.00 38.75 4.92
3245 6519 7.939588 GGAGGGAGTATTTAACAGAAGCATATT 59.060 37.037 0.00 0.00 0.00 1.28
3247 6521 6.385759 TGGAGGGAGTATTTAACAGAAGCATA 59.614 38.462 0.00 0.00 0.00 3.14
3256 6530 3.644738 TCCGGATGGAGGGAGTATTTAAC 59.355 47.826 0.00 0.00 40.17 2.01
3269 6543 1.335810 CGACGAGTATTTCCGGATGGA 59.664 52.381 4.15 0.00 44.61 3.41
3273 6547 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
3274 6548 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14
3275 6549 1.019673 TCCTCCGACGAGTATTTCCG 58.980 55.000 0.00 0.00 33.93 4.30
3276 6550 3.381949 CATTCCTCCGACGAGTATTTCC 58.618 50.000 0.00 0.00 33.93 3.13
3277 6551 3.067742 TCCATTCCTCCGACGAGTATTTC 59.932 47.826 0.00 0.00 33.93 2.17
3278 6552 3.028850 TCCATTCCTCCGACGAGTATTT 58.971 45.455 0.00 0.00 33.93 1.40
3279 6553 2.662866 TCCATTCCTCCGACGAGTATT 58.337 47.619 0.00 0.00 33.93 1.89
3280 6554 2.359981 TCCATTCCTCCGACGAGTAT 57.640 50.000 0.00 0.00 33.93 2.12
3281 6555 1.954382 CATCCATTCCTCCGACGAGTA 59.046 52.381 0.00 0.00 33.93 2.59
3282 6556 0.747255 CATCCATTCCTCCGACGAGT 59.253 55.000 0.00 0.00 33.93 4.18
3283 6557 0.747255 ACATCCATTCCTCCGACGAG 59.253 55.000 0.00 0.00 35.72 4.18
3284 6558 2.061509 TACATCCATTCCTCCGACGA 57.938 50.000 0.00 0.00 0.00 4.20
3286 6560 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
3287 6561 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
3288 6562 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
3328 6602 9.573133 GTCGAAGAAATGGATAAAAATGAATGT 57.427 29.630 0.00 0.00 39.69 2.71
3331 6605 9.624697 CTTGTCGAAGAAATGGATAAAAATGAA 57.375 29.630 0.00 0.00 39.69 2.57
3332 6606 8.792633 ACTTGTCGAAGAAATGGATAAAAATGA 58.207 29.630 0.00 0.00 39.69 2.57
3338 6612 8.889717 GGAAATACTTGTCGAAGAAATGGATAA 58.110 33.333 0.00 0.00 39.69 1.75
3341 6615 5.350365 CGGAAATACTTGTCGAAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
3343 6617 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
3344 6618 5.350640 GTCCGGAAATACTTGTCGAAGAAAT 59.649 40.000 5.23 0.00 39.69 2.17
3345 6619 4.687483 GTCCGGAAATACTTGTCGAAGAAA 59.313 41.667 5.23 0.00 39.69 2.52
3346 6620 4.240096 GTCCGGAAATACTTGTCGAAGAA 58.760 43.478 5.23 0.00 39.69 2.52
3347 6621 3.671433 CGTCCGGAAATACTTGTCGAAGA 60.671 47.826 5.23 0.00 32.98 2.87
3349 6623 2.598589 CGTCCGGAAATACTTGTCGAA 58.401 47.619 5.23 0.00 0.00 3.71
3350 6624 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
3351 6625 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3354 6628 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3357 6631 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3358 6632 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3360 6634 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3361 6635 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3362 6636 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
3363 6637 0.817229 GTAGTACTCCCTCCGTCCGG 60.817 65.000 0.00 0.00 0.00 5.14
3364 6638 0.179936 AGTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
3367 6641 3.383223 AGACTAGTAGTACTCCCTCCGT 58.617 50.000 5.96 0.00 0.00 4.69
3368 6642 4.343526 TGTAGACTAGTAGTACTCCCTCCG 59.656 50.000 5.96 0.00 0.00 4.63
3369 6643 5.366477 ACTGTAGACTAGTAGTACTCCCTCC 59.634 48.000 5.96 0.00 0.00 4.30
3371 6645 6.443206 TCAACTGTAGACTAGTAGTACTCCCT 59.557 42.308 5.96 5.32 0.00 4.20
3372 6646 6.648192 TCAACTGTAGACTAGTAGTACTCCC 58.352 44.000 5.96 0.00 0.00 4.30
3373 6647 7.555087 TCTCAACTGTAGACTAGTAGTACTCC 58.445 42.308 5.96 0.00 0.00 3.85
3374 6648 8.469200 TCTCTCAACTGTAGACTAGTAGTACTC 58.531 40.741 5.96 0.00 0.00 2.59
3375 6649 8.365060 TCTCTCAACTGTAGACTAGTAGTACT 57.635 38.462 8.14 8.14 0.00 2.73
3376 6650 8.469200 TCTCTCTCAACTGTAGACTAGTAGTAC 58.531 40.741 1.88 1.49 0.00 2.73
3377 6651 8.592529 TCTCTCTCAACTGTAGACTAGTAGTA 57.407 38.462 1.88 0.00 0.00 1.82
3378 6652 7.484993 TCTCTCTCAACTGTAGACTAGTAGT 57.515 40.000 1.37 1.37 0.00 2.73
3379 6653 8.958119 ATTCTCTCTCAACTGTAGACTAGTAG 57.042 38.462 0.00 0.00 0.00 2.57
3381 6655 9.391006 CTTATTCTCTCTCAACTGTAGACTAGT 57.609 37.037 0.00 0.00 0.00 2.57
3389 6663 7.731054 AGTTTGACTTATTCTCTCTCAACTGT 58.269 34.615 0.00 0.00 0.00 3.55
3552 6827 5.021033 ACGGTCTCGAGATAGTTTAGAGA 57.979 43.478 19.90 0.00 40.11 3.10
3555 6830 5.430462 CGTAACGGTCTCGAGATAGTTTAG 58.570 45.833 29.95 22.89 40.11 1.85
3560 6835 1.865970 AGCGTAACGGTCTCGAGATAG 59.134 52.381 19.90 17.33 40.11 2.08
3563 6838 1.792301 CAGCGTAACGGTCTCGAGA 59.208 57.895 12.08 12.08 40.11 4.04
3587 6862 1.054406 TGAGCTATACAGGGTGGCCC 61.054 60.000 0.00 0.00 45.90 5.80
3588 6863 0.837272 TTGAGCTATACAGGGTGGCC 59.163 55.000 0.00 0.00 0.00 5.36
3590 6865 2.119495 AGGTTGAGCTATACAGGGTGG 58.881 52.381 0.00 0.00 0.00 4.61
3591 6866 3.197766 TCAAGGTTGAGCTATACAGGGTG 59.802 47.826 0.00 0.00 32.50 4.61
3592 6867 3.450904 TCAAGGTTGAGCTATACAGGGT 58.549 45.455 0.00 0.00 32.50 4.34
3633 6910 4.637276 TCAACTCAACTTAAATCCGAGCA 58.363 39.130 0.00 0.00 0.00 4.26
3637 6914 4.003648 AGGCTCAACTCAACTTAAATCCG 58.996 43.478 0.00 0.00 0.00 4.18
3638 6915 7.201741 GGAATAGGCTCAACTCAACTTAAATCC 60.202 40.741 0.00 0.00 0.00 3.01
3639 6916 7.336931 TGGAATAGGCTCAACTCAACTTAAATC 59.663 37.037 0.00 0.00 0.00 2.17
3652 6935 3.541632 GACCGATTTGGAATAGGCTCAA 58.458 45.455 0.00 0.00 42.00 3.02
3666 6949 2.165030 ACCGATACAAGTTCGACCGATT 59.835 45.455 0.00 0.00 38.88 3.34
3667 6950 1.747355 ACCGATACAAGTTCGACCGAT 59.253 47.619 0.00 0.00 38.88 4.18
3778 7061 9.739276 TTGAAGTATGATGTCCTCAGTTTTAAT 57.261 29.630 0.00 0.00 37.28 1.40
3781 7064 6.998074 TGTTGAAGTATGATGTCCTCAGTTTT 59.002 34.615 0.00 0.00 37.28 2.43
3812 7095 2.371510 CCAGCAATTTTTGGGGGAAAGA 59.628 45.455 0.00 0.00 0.00 2.52
3814 7097 2.131023 ACCAGCAATTTTTGGGGGAAA 58.869 42.857 9.25 0.00 38.82 3.13
3820 7103 7.830739 ACTTTCTCTATACCAGCAATTTTTGG 58.169 34.615 3.89 3.89 40.38 3.28
3821 7104 9.132521 CAACTTTCTCTATACCAGCAATTTTTG 57.867 33.333 0.00 0.00 0.00 2.44
3891 7174 3.374745 GGTGTTGTTTTGTGATCAGCAG 58.625 45.455 0.00 0.00 0.00 4.24
3894 7177 5.707298 AGATAGGGTGTTGTTTTGTGATCAG 59.293 40.000 0.00 0.00 0.00 2.90
3929 7212 7.698912 CATGTATTGGGAAAGATATAGGGGAA 58.301 38.462 0.00 0.00 0.00 3.97
3938 7225 3.979911 TGTGGCATGTATTGGGAAAGAT 58.020 40.909 0.00 0.00 0.00 2.40
3981 7268 1.254026 CTAGAACTGACGGTGGTCCA 58.746 55.000 0.00 0.00 42.73 4.02
3982 7269 0.108756 GCTAGAACTGACGGTGGTCC 60.109 60.000 0.00 0.00 42.73 4.46
3994 7281 1.783071 AGCAGTCCCCTAGCTAGAAC 58.217 55.000 22.70 15.77 36.73 3.01
4002 7289 1.076485 GTCCGGTAGCAGTCCCCTA 60.076 63.158 0.00 0.00 0.00 3.53
4003 7290 2.363925 GTCCGGTAGCAGTCCCCT 60.364 66.667 0.00 0.00 0.00 4.79
4010 7297 0.036765 GACACAATGGTCCGGTAGCA 60.037 55.000 0.00 4.67 40.55 3.49
4037 7324 3.104766 GCATCCAGCGGTGACATG 58.895 61.111 17.83 17.57 0.00 3.21
4048 7335 2.176581 TGCATATAAGTTGGGGCATCCA 59.823 45.455 0.00 0.00 45.43 3.41
4051 7338 4.116782 TGATGCATATAAGTTGGGGCAT 57.883 40.909 0.00 0.00 43.93 4.40
4052 7339 3.591695 TGATGCATATAAGTTGGGGCA 57.408 42.857 0.00 0.00 35.54 5.36
4053 7340 5.473066 AATTGATGCATATAAGTTGGGGC 57.527 39.130 0.00 0.00 0.00 5.80
4055 7342 7.433708 TCGTAATTGATGCATATAAGTTGGG 57.566 36.000 0.00 0.00 0.00 4.12
4078 8032 8.528044 TTTGGACAGTGGGGTATATAAATTTC 57.472 34.615 0.00 0.00 0.00 2.17
4087 8042 5.222254 ACAAGTAATTTGGACAGTGGGGTAT 60.222 40.000 0.00 0.00 41.25 2.73
4091 8046 3.188460 CGACAAGTAATTTGGACAGTGGG 59.812 47.826 0.00 0.00 41.25 4.61
4097 8052 6.526674 CCATTTAAGCGACAAGTAATTTGGAC 59.473 38.462 0.00 0.00 41.25 4.02
4100 8055 7.754924 ACATCCATTTAAGCGACAAGTAATTTG 59.245 33.333 0.00 0.00 42.68 2.32
4102 8057 7.391148 ACATCCATTTAAGCGACAAGTAATT 57.609 32.000 0.00 0.00 0.00 1.40
4103 8058 8.677148 ATACATCCATTTAAGCGACAAGTAAT 57.323 30.769 0.00 0.00 0.00 1.89
4105 8060 7.497595 AGATACATCCATTTAAGCGACAAGTA 58.502 34.615 0.00 0.00 0.00 2.24
4106 8061 6.349300 AGATACATCCATTTAAGCGACAAGT 58.651 36.000 0.00 0.00 0.00 3.16
4107 8062 6.851222 AGATACATCCATTTAAGCGACAAG 57.149 37.500 0.00 0.00 0.00 3.16
4110 8065 5.926542 TGCTAGATACATCCATTTAAGCGAC 59.073 40.000 0.00 0.00 0.00 5.19
4112 8067 5.696270 TGTGCTAGATACATCCATTTAAGCG 59.304 40.000 0.00 0.00 0.00 4.68
4140 8095 8.653338 GCACGATTACGATGGTTATTGTATTAT 58.347 33.333 0.15 0.00 42.66 1.28
4141 8096 7.148934 CGCACGATTACGATGGTTATTGTATTA 60.149 37.037 0.15 0.00 42.66 0.98
4143 8098 5.118050 CGCACGATTACGATGGTTATTGTAT 59.882 40.000 0.15 0.00 42.66 2.29
4144 8099 4.441744 CGCACGATTACGATGGTTATTGTA 59.558 41.667 0.15 0.00 42.66 2.41
4145 8100 3.244345 CGCACGATTACGATGGTTATTGT 59.756 43.478 0.00 0.00 42.66 2.71
4146 8101 3.362596 CCGCACGATTACGATGGTTATTG 60.363 47.826 0.00 0.00 42.66 1.90
4147 8102 2.798283 CCGCACGATTACGATGGTTATT 59.202 45.455 0.00 0.00 42.66 1.40
4149 8104 1.404748 TCCGCACGATTACGATGGTTA 59.595 47.619 0.00 0.00 42.66 2.85
4150 8105 0.173935 TCCGCACGATTACGATGGTT 59.826 50.000 0.00 0.00 42.66 3.67
4152 8107 1.497991 ATTCCGCACGATTACGATGG 58.502 50.000 0.00 0.00 42.66 3.51
4153 8108 4.149922 ACATAATTCCGCACGATTACGATG 59.850 41.667 0.00 0.00 42.66 3.84
4154 8109 4.304110 ACATAATTCCGCACGATTACGAT 58.696 39.130 0.00 0.00 42.66 3.73
4155 8110 3.708890 ACATAATTCCGCACGATTACGA 58.291 40.909 0.00 0.00 42.66 3.43
4156 8111 3.734231 AGACATAATTCCGCACGATTACG 59.266 43.478 0.00 0.00 45.75 3.18
4157 8112 6.584942 TGATAGACATAATTCCGCACGATTAC 59.415 38.462 0.00 0.00 0.00 1.89
4162 8137 5.861787 TGTATGATAGACATAATTCCGCACG 59.138 40.000 0.00 0.00 42.19 5.34
4163 8138 6.645003 TGTGTATGATAGACATAATTCCGCAC 59.355 38.462 0.00 0.00 42.19 5.34
4184 8159 2.124277 AGCTGCATCATCATGTGTGT 57.876 45.000 1.02 0.00 31.86 3.72
4185 8160 2.940410 TGTAGCTGCATCATCATGTGTG 59.060 45.455 0.00 0.00 31.86 3.82
4192 8167 4.357142 CCAACATTTGTAGCTGCATCATC 58.643 43.478 4.98 0.00 0.00 2.92
4255 11127 1.200716 CGTTGGACATTTGCAGCAGAT 59.799 47.619 0.00 0.00 0.00 2.90
4331 11203 2.023673 CTCGTCTCTGATCTTGCCTCT 58.976 52.381 0.00 0.00 0.00 3.69
4332 11204 2.020720 TCTCGTCTCTGATCTTGCCTC 58.979 52.381 0.00 0.00 0.00 4.70
4353 11225 6.322201 ACAGAATTCTTTGTCTGACCAACAAT 59.678 34.615 4.86 0.00 43.32 2.71
4354 11226 5.652014 ACAGAATTCTTTGTCTGACCAACAA 59.348 36.000 4.86 0.00 43.32 2.83
4408 13034 4.980805 ACGGCATCGCACGTTGGT 62.981 61.111 3.56 0.00 40.99 3.67
4409 13035 4.147322 GACGGCATCGCACGTTGG 62.147 66.667 3.56 0.00 44.24 3.77
4421 13047 0.949105 AACGTGTTGGATGAGACGGC 60.949 55.000 0.00 0.00 40.21 5.68
4463 13099 6.343716 TCTCAAATACATGGTGCAAAATGT 57.656 33.333 17.05 17.05 40.13 2.71
4591 13232 4.074526 GGTCGGCTGCAGCAGAGA 62.075 66.667 36.74 28.58 45.27 3.10
4725 13815 1.227793 TCCTGCATGCACACGACAA 60.228 52.632 18.46 0.00 0.00 3.18
4831 13931 4.091939 ATGCTCTGCTGCAGCCGA 62.092 61.111 34.64 31.07 46.71 5.54
4832 13932 3.877357 CATGCTCTGCTGCAGCCG 61.877 66.667 34.64 28.66 46.71 5.52
4839 13939 1.630126 CCCAGGGTACATGCTCTGCT 61.630 60.000 0.00 0.00 35.70 4.24
4841 13941 1.153086 GCCCAGGGTACATGCTCTG 60.153 63.158 7.55 0.00 36.75 3.35
4842 13942 2.735772 CGCCCAGGGTACATGCTCT 61.736 63.158 7.55 0.00 0.00 4.09
4843 13943 2.203070 CGCCCAGGGTACATGCTC 60.203 66.667 7.55 0.00 0.00 4.26
4853 13953 3.925630 ATGAAGTGTGGCGCCCAGG 62.926 63.158 26.77 0.00 32.34 4.45
4854 13954 2.360350 ATGAAGTGTGGCGCCCAG 60.360 61.111 26.77 0.00 32.34 4.45
4855 13955 2.359850 GATGAAGTGTGGCGCCCA 60.360 61.111 26.77 18.95 0.00 5.36
4856 13956 2.045926 AGATGAAGTGTGGCGCCC 60.046 61.111 26.77 16.24 0.00 6.13
4857 13957 3.044059 GCAGATGAAGTGTGGCGCC 62.044 63.158 22.73 22.73 0.00 6.53
4858 13958 2.482374 GCAGATGAAGTGTGGCGC 59.518 61.111 0.00 0.00 0.00 6.53
4859 13959 2.780643 CGCAGATGAAGTGTGGCG 59.219 61.111 0.00 0.00 38.45 5.69
4860 13960 2.482374 GCGCAGATGAAGTGTGGC 59.518 61.111 0.30 0.00 0.00 5.01
4861 13961 2.780643 CGCGCAGATGAAGTGTGG 59.219 61.111 8.75 0.00 0.00 4.17
4862 13962 2.097160 GCGCGCAGATGAAGTGTG 59.903 61.111 29.10 0.00 0.00 3.82
4863 13963 3.121030 GGCGCGCAGATGAAGTGT 61.121 61.111 34.42 0.00 0.00 3.55
4864 13964 3.120385 TGGCGCGCAGATGAAGTG 61.120 61.111 34.42 0.00 0.00 3.16
4865 13965 3.121030 GTGGCGCGCAGATGAAGT 61.121 61.111 34.42 0.00 0.00 3.01
4866 13966 3.120385 TGTGGCGCGCAGATGAAG 61.120 61.111 34.42 0.00 0.00 3.02
4867 13967 3.422303 GTGTGGCGCGCAGATGAA 61.422 61.111 34.42 8.81 0.00 2.57
4868 13968 3.881952 AAGTGTGGCGCGCAGATGA 62.882 57.895 34.42 8.53 0.00 2.92
4941 14041 9.398538 GGATAGAACTCTTACTCGGATATGTAT 57.601 37.037 0.00 0.00 0.00 2.29
4994 14101 7.546667 TCGGTTAATCCTAGACAACAACAATAC 59.453 37.037 0.00 0.00 0.00 1.89
5079 14211 0.895530 AGCTTTTCGGAGGTCATCGA 59.104 50.000 0.00 0.00 0.00 3.59
5171 14303 2.529389 ACGCCCTCCAGAAACCCT 60.529 61.111 0.00 0.00 0.00 4.34
5180 14312 4.489771 CCACCATCCACGCCCTCC 62.490 72.222 0.00 0.00 0.00 4.30
5253 14386 2.858646 GCTCGCCCAAACTTCTTCAAAC 60.859 50.000 0.00 0.00 0.00 2.93
5359 14868 3.374058 CACCTTATTGTTGCGGGTCTTAG 59.626 47.826 0.00 0.00 0.00 2.18
5411 18364 3.834231 AGCCACCTGCAAATTATTCAAGT 59.166 39.130 0.00 0.00 44.83 3.16
5497 18468 8.954950 TTGTTTCATTTTTCTTTTGCTGGATA 57.045 26.923 0.00 0.00 0.00 2.59
5643 18632 9.409312 CAGCAAATTATACACATGTTTCTTCAA 57.591 29.630 0.00 0.00 0.00 2.69
5805 18794 2.016318 CGCCAGGTAAATGCATCTTCA 58.984 47.619 0.00 0.00 0.00 3.02
5891 18880 9.095065 GTTAATTTGGTAGTGTCTATGTAGTGG 57.905 37.037 0.00 0.00 0.00 4.00
6164 19522 2.094417 GGTCAAACTCATACAAGCGAGC 59.906 50.000 0.00 0.00 32.21 5.03
6191 19549 5.434408 CCACATGAGAGATGATGAAGGAAA 58.566 41.667 0.00 0.00 0.00 3.13
6193 19551 3.390311 CCCACATGAGAGATGATGAAGGA 59.610 47.826 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.