Multiple sequence alignment - TraesCS5B01G268200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G268200 chr5B 100.000 3702 0 0 1 3702 454493199 454489498 0.000000e+00 6837.0
1 TraesCS5B01G268200 chr5B 96.078 1122 33 5 1628 2747 454403485 454402373 0.000000e+00 1818.0
2 TraesCS5B01G268200 chr5B 92.085 796 25 4 424 1183 454407589 454406796 0.000000e+00 1086.0
3 TraesCS5B01G268200 chr5B 91.003 678 42 5 3028 3702 454376224 454375563 0.000000e+00 896.0
4 TraesCS5B01G268200 chr5B 95.946 370 7 3 1179 1548 454403880 454403519 8.850000e-166 593.0
5 TraesCS5B01G268200 chr5B 91.941 273 11 3 88 356 454407862 454407597 4.520000e-99 372.0
6 TraesCS5B01G268200 chr5B 78.523 447 75 18 1708 2147 454637234 454637666 1.310000e-69 274.0
7 TraesCS5B01G268200 chr5B 79.397 398 61 17 1747 2138 454477179 454477561 1.020000e-65 261.0
8 TraesCS5B01G268200 chr5B 83.221 298 28 10 2755 3032 454376560 454376265 1.710000e-63 254.0
9 TraesCS5B01G268200 chr5B 75.783 351 68 13 1715 2057 454654236 454653895 1.060000e-35 161.0
10 TraesCS5B01G268200 chr5B 95.522 67 3 0 1 67 454408227 454408161 1.410000e-19 108.0
11 TraesCS5B01G268200 chr5B 97.436 39 1 0 892 930 454636549 454636587 2.390000e-07 67.6
12 TraesCS5B01G268200 chr5B 95.238 42 2 0 892 933 454657669 454657628 2.390000e-07 67.6
13 TraesCS5B01G268200 chr5B 80.000 95 8 4 2868 2951 700207376 700207282 3.990000e-05 60.2
14 TraesCS5B01G268200 chr5A 93.311 1196 65 9 1667 2855 478991955 478990768 0.000000e+00 1751.0
15 TraesCS5B01G268200 chr5A 91.045 670 54 1 2929 3598 478990434 478989771 0.000000e+00 900.0
16 TraesCS5B01G268200 chr5A 94.165 497 24 2 1057 1550 478992497 478992003 0.000000e+00 752.0
17 TraesCS5B01G268200 chr5A 88.368 619 30 12 435 1016 478993555 478992942 0.000000e+00 706.0
18 TraesCS5B01G268200 chr5A 84.382 461 35 13 457 892 479232690 479232242 5.720000e-113 418.0
19 TraesCS5B01G268200 chr5A 77.876 452 71 21 1707 2147 479047705 479048138 1.710000e-63 254.0
20 TraesCS5B01G268200 chr5A 83.270 263 35 7 1 262 479002231 479001977 2.220000e-57 233.0
21 TraesCS5B01G268200 chr5A 89.908 109 11 0 3594 3702 478961100 478960992 1.390000e-29 141.0
22 TraesCS5B01G268200 chr5A 94.872 39 2 0 892 930 479047026 479047064 1.110000e-05 62.1
23 TraesCS5B01G268200 chr5D 84.543 854 102 20 1702 2543 378898388 378897553 0.000000e+00 819.0
24 TraesCS5B01G268200 chr5D 86.195 594 36 13 456 1016 378899667 378899087 5.290000e-168 601.0
25 TraesCS5B01G268200 chr5D 83.068 502 69 11 1052 1548 378898964 378898474 3.390000e-120 442.0
26 TraesCS5B01G268200 chr5D 89.496 238 18 2 4 241 378944865 378944635 1.010000e-75 294.0
27 TraesCS5B01G268200 chr5D 87.967 241 21 5 238 471 378907905 378907666 1.010000e-70 278.0
28 TraesCS5B01G268200 chr5D 79.361 407 64 17 1747 2147 378957418 378957810 6.090000e-68 268.0
29 TraesCS5B01G268200 chr5D 78.308 461 69 25 1708 2153 378996970 378996526 6.090000e-68 268.0
30 TraesCS5B01G268200 chr5D 88.571 70 7 1 12 81 36552726 36552658 2.370000e-12 84.2
31 TraesCS5B01G268200 chr5D 82.000 100 16 2 4 103 387099524 387099621 2.370000e-12 84.2
32 TraesCS5B01G268200 chr5D 97.436 39 1 0 892 930 378956697 378956735 2.390000e-07 67.6
33 TraesCS5B01G268200 chr7D 76.994 326 60 13 23 343 156200837 156200522 4.920000e-39 172.0
34 TraesCS5B01G268200 chr7D 86.585 82 7 4 1548 1626 40712586 40712666 1.830000e-13 87.9
35 TraesCS5B01G268200 chr4A 96.721 61 2 0 1565 1625 469242997 469243057 6.540000e-18 102.0
36 TraesCS5B01G268200 chr6A 98.246 57 1 0 1570 1626 442395661 442395717 2.350000e-17 100.0
37 TraesCS5B01G268200 chr6A 95.238 42 2 0 29 70 613608034 613607993 2.390000e-07 67.6
38 TraesCS5B01G268200 chr7A 95.082 61 3 0 1568 1628 719012496 719012436 3.040000e-16 97.1
39 TraesCS5B01G268200 chr7A 95.082 61 3 0 1568 1628 719286365 719286305 3.040000e-16 97.1
40 TraesCS5B01G268200 chr7A 84.507 71 9 2 2733 2801 566131903 566131973 6.630000e-08 69.4
41 TraesCS5B01G268200 chr2A 89.610 77 6 2 1551 1625 79315188 79315264 3.040000e-16 97.1
42 TraesCS5B01G268200 chr2A 91.429 70 6 0 1566 1635 90747862 90747793 3.040000e-16 97.1
43 TraesCS5B01G268200 chr1B 89.610 77 6 2 1551 1625 459922246 459922170 3.040000e-16 97.1
44 TraesCS5B01G268200 chrUn 86.364 88 11 1 2715 2801 45538217 45538304 1.090000e-15 95.3
45 TraesCS5B01G268200 chr3A 91.549 71 3 3 1549 1617 522178392 522178323 1.090000e-15 95.3
46 TraesCS5B01G268200 chr1A 85.057 87 11 2 2708 2793 555530943 555530858 1.830000e-13 87.9
47 TraesCS5B01G268200 chr6B 83.529 85 14 0 2708 2792 34000571 34000655 3.060000e-11 80.5
48 TraesCS5B01G268200 chr3D 72.403 308 65 15 2997 3292 48152226 48151927 3.060000e-11 80.5
49 TraesCS5B01G268200 chr3D 94.000 50 2 1 43 92 606293388 606293436 1.430000e-09 75.0
50 TraesCS5B01G268200 chr3D 85.075 67 6 4 2737 2801 178528776 178528840 8.580000e-07 65.8
51 TraesCS5B01G268200 chr6D 87.500 64 7 1 2729 2792 421695692 421695630 5.130000e-09 73.1
52 TraesCS5B01G268200 chr6D 95.238 42 2 0 2729 2770 420968892 420968933 2.390000e-07 67.6
53 TraesCS5B01G268200 chr2B 81.188 101 8 4 2860 2950 374256657 374256756 1.840000e-08 71.3
54 TraesCS5B01G268200 chr4B 83.099 71 9 3 4 72 540460621 540460552 1.110000e-05 62.1
55 TraesCS5B01G268200 chr3B 100.000 32 0 0 2997 3028 75740685 75740654 3.990000e-05 60.2
56 TraesCS5B01G268200 chr4D 100.000 29 0 0 2868 2896 374037053 374037025 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G268200 chr5B 454489498 454493199 3701 True 6837.000000 6837 100.00000 1 3702 1 chr5B.!!$R1 3701
1 TraesCS5B01G268200 chr5B 454402373 454408227 5854 True 795.400000 1818 94.31440 1 2747 5 chr5B.!!$R4 2746
2 TraesCS5B01G268200 chr5B 454375563 454376560 997 True 575.000000 896 87.11200 2755 3702 2 chr5B.!!$R3 947
3 TraesCS5B01G268200 chr5A 478989771 478993555 3784 True 1027.250000 1751 91.72225 435 3598 4 chr5A.!!$R4 3163
4 TraesCS5B01G268200 chr5D 378897553 378899667 2114 True 620.666667 819 84.60200 456 2543 3 chr5D.!!$R5 2087

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 789 0.179156 GCGATCAAGTTGCACATGGG 60.179 55.0 0.00 0.00 37.18 4.00 F
1409 5062 0.464554 GGAATGTACTGGAGGCTGCC 60.465 60.0 11.65 11.65 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 5268 0.107643 GCTTCCCTGCTACTCCATCC 59.892 60.0 0.0 0.0 0.0 3.51 R
2861 6536 0.396974 AGGGCTGCTGTTGGTTGAAA 60.397 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.040412 GGGATCACCAGAGGTTTTCACT 59.960 50.000 0.00 0.00 39.85 3.41
34 35 3.498661 GGGATCACCAGAGGTTTTCACTT 60.499 47.826 0.00 0.00 39.85 3.16
61 62 2.427753 GGCTTAGAGGGATGGCCG 59.572 66.667 0.00 0.00 33.30 6.13
79 80 4.947147 GGGCGGTGGTCAGCAACA 62.947 66.667 0.00 0.00 36.53 3.33
80 81 3.357079 GGCGGTGGTCAGCAACAG 61.357 66.667 0.00 0.00 36.53 3.16
81 82 4.030452 GCGGTGGTCAGCAACAGC 62.030 66.667 0.00 0.00 32.94 4.40
82 83 2.591429 CGGTGGTCAGCAACAGCA 60.591 61.111 0.00 0.00 34.96 4.41
83 84 2.610694 CGGTGGTCAGCAACAGCAG 61.611 63.158 0.00 0.00 34.96 4.24
84 85 1.526917 GGTGGTCAGCAACAGCAGT 60.527 57.895 0.00 0.00 35.33 4.40
85 86 1.650912 GTGGTCAGCAACAGCAGTG 59.349 57.895 0.00 0.00 0.00 3.66
86 87 1.526686 TGGTCAGCAACAGCAGTGG 60.527 57.895 0.00 0.00 0.00 4.00
87 88 2.263741 GGTCAGCAACAGCAGTGGG 61.264 63.158 0.00 0.00 0.00 4.61
88 89 2.113774 TCAGCAACAGCAGTGGGG 59.886 61.111 0.00 0.00 0.00 4.96
89 90 2.987547 CAGCAACAGCAGTGGGGG 60.988 66.667 0.00 0.00 0.00 5.40
225 503 1.040646 TTAGATCGCGGCTTGAGGAT 58.959 50.000 6.13 0.00 0.00 3.24
254 532 0.614979 TGGGAGGAAGAAGAGGGTCG 60.615 60.000 0.00 0.00 0.00 4.79
255 533 0.615261 GGGAGGAAGAAGAGGGTCGT 60.615 60.000 0.00 0.00 0.00 4.34
301 579 3.242739 CGGACAAGAAACAAAGTGACTGG 60.243 47.826 0.00 0.00 0.00 4.00
309 587 2.017049 ACAAAGTGACTGGTGTGAAGC 58.983 47.619 1.78 0.00 0.00 3.86
326 604 0.814010 AGCGTTCTTTCACGTGCCTT 60.814 50.000 11.67 0.00 42.43 4.35
334 612 6.608610 GTTCTTTCACGTGCCTTATGTTTAT 58.391 36.000 11.67 0.00 0.00 1.40
337 615 6.874664 TCTTTCACGTGCCTTATGTTTATACA 59.125 34.615 11.67 0.00 38.95 2.29
356 638 6.672266 ATACACTCCCCAGTAATGATAGTG 57.328 41.667 14.05 14.05 38.97 2.74
357 639 4.362677 ACACTCCCCAGTAATGATAGTGT 58.637 43.478 14.98 14.98 40.77 3.55
360 642 7.302948 ACACTCCCCAGTAATGATAGTGTATA 58.697 38.462 17.59 0.00 42.99 1.47
361 643 7.232941 ACACTCCCCAGTAATGATAGTGTATAC 59.767 40.741 17.59 0.00 42.99 1.47
362 644 6.724905 ACTCCCCAGTAATGATAGTGTATACC 59.275 42.308 0.00 0.00 31.61 2.73
363 645 5.713389 TCCCCAGTAATGATAGTGTATACCG 59.287 44.000 0.00 0.00 31.61 4.02
364 646 5.479375 CCCCAGTAATGATAGTGTATACCGT 59.521 44.000 0.00 0.00 31.61 4.83
365 647 6.387465 CCCAGTAATGATAGTGTATACCGTG 58.613 44.000 0.00 0.00 31.61 4.94
366 648 5.862323 CCAGTAATGATAGTGTATACCGTGC 59.138 44.000 0.00 0.00 31.61 5.34
367 649 6.294564 CCAGTAATGATAGTGTATACCGTGCT 60.295 42.308 0.00 0.00 31.61 4.40
368 650 6.582672 CAGTAATGATAGTGTATACCGTGCTG 59.417 42.308 0.00 0.00 0.00 4.41
369 651 5.784578 AATGATAGTGTATACCGTGCTGA 57.215 39.130 0.00 0.00 0.00 4.26
370 652 4.563337 TGATAGTGTATACCGTGCTGAC 57.437 45.455 0.00 0.00 0.00 3.51
371 653 3.949113 TGATAGTGTATACCGTGCTGACA 59.051 43.478 0.00 0.00 0.00 3.58
372 654 4.399934 TGATAGTGTATACCGTGCTGACAA 59.600 41.667 0.00 0.00 0.00 3.18
373 655 3.671008 AGTGTATACCGTGCTGACAAA 57.329 42.857 0.00 0.00 0.00 2.83
374 656 3.997762 AGTGTATACCGTGCTGACAAAA 58.002 40.909 0.00 0.00 0.00 2.44
375 657 4.382291 AGTGTATACCGTGCTGACAAAAA 58.618 39.130 0.00 0.00 0.00 1.94
391 673 2.165357 AAAAATGCTCCCTCCATCCC 57.835 50.000 0.00 0.00 0.00 3.85
392 674 1.009997 AAAATGCTCCCTCCATCCCA 58.990 50.000 0.00 0.00 0.00 4.37
393 675 1.238615 AAATGCTCCCTCCATCCCAT 58.761 50.000 0.00 0.00 0.00 4.00
394 676 2.138535 AATGCTCCCTCCATCCCATA 57.861 50.000 0.00 0.00 0.00 2.74
395 677 2.138535 ATGCTCCCTCCATCCCATAA 57.861 50.000 0.00 0.00 0.00 1.90
396 678 2.138535 TGCTCCCTCCATCCCATAAT 57.861 50.000 0.00 0.00 0.00 1.28
397 679 3.290039 TGCTCCCTCCATCCCATAATA 57.710 47.619 0.00 0.00 0.00 0.98
398 680 3.819187 TGCTCCCTCCATCCCATAATAT 58.181 45.455 0.00 0.00 0.00 1.28
399 681 4.971661 TGCTCCCTCCATCCCATAATATA 58.028 43.478 0.00 0.00 0.00 0.86
400 682 5.358306 TGCTCCCTCCATCCCATAATATAA 58.642 41.667 0.00 0.00 0.00 0.98
401 683 5.429762 TGCTCCCTCCATCCCATAATATAAG 59.570 44.000 0.00 0.00 0.00 1.73
402 684 5.667626 GCTCCCTCCATCCCATAATATAAGA 59.332 44.000 0.00 0.00 0.00 2.10
403 685 6.408662 GCTCCCTCCATCCCATAATATAAGAC 60.409 46.154 0.00 0.00 0.00 3.01
404 686 6.580167 TCCCTCCATCCCATAATATAAGACA 58.420 40.000 0.00 0.00 0.00 3.41
405 687 6.443849 TCCCTCCATCCCATAATATAAGACAC 59.556 42.308 0.00 0.00 0.00 3.67
406 688 6.215431 CCCTCCATCCCATAATATAAGACACA 59.785 42.308 0.00 0.00 0.00 3.72
407 689 7.092264 CCCTCCATCCCATAATATAAGACACAT 60.092 40.741 0.00 0.00 0.00 3.21
408 690 8.992349 CCTCCATCCCATAATATAAGACACATA 58.008 37.037 0.00 0.00 0.00 2.29
409 691 9.823647 CTCCATCCCATAATATAAGACACATAC 57.176 37.037 0.00 0.00 0.00 2.39
410 692 9.332713 TCCATCCCATAATATAAGACACATACA 57.667 33.333 0.00 0.00 0.00 2.29
411 693 9.958180 CCATCCCATAATATAAGACACATACAA 57.042 33.333 0.00 0.00 0.00 2.41
420 702 9.653287 AATATAAGACACATACAATATGACGGG 57.347 33.333 2.88 0.00 0.00 5.28
421 703 5.607939 AAGACACATACAATATGACGGGA 57.392 39.130 2.88 0.00 0.00 5.14
422 704 4.945246 AGACACATACAATATGACGGGAC 58.055 43.478 2.88 0.00 0.00 4.46
466 748 5.445540 CGCGATAACTACTAGCATGTCGATA 60.446 44.000 0.00 0.00 0.00 2.92
471 753 6.392625 AACTACTAGCATGTCGATATGTGT 57.607 37.500 21.29 18.41 0.00 3.72
507 789 0.179156 GCGATCAAGTTGCACATGGG 60.179 55.000 0.00 0.00 37.18 4.00
531 813 6.019479 GGTGCTCGAGTTTCAAATAGTCTATG 60.019 42.308 15.13 0.00 0.00 2.23
595 877 7.653713 CGTATCAGAAACTATAAACAGCTCCAT 59.346 37.037 0.00 0.00 0.00 3.41
658 940 4.732784 AGTTGCATATAAACAAACGCTGG 58.267 39.130 0.00 0.00 0.00 4.85
669 951 1.824272 AAACGCTGGTTCGTACGTGC 61.824 55.000 16.05 9.07 42.46 5.34
1055 1781 4.202441 GGTGGACCGTTAGAGTCATACTA 58.798 47.826 0.00 0.00 35.89 1.82
1163 1892 3.641436 TCAAGCTTATCAAGGCCGATCTA 59.359 43.478 0.00 0.00 0.00 1.98
1256 4905 2.435693 GGGGGAGGTGACTGATCCG 61.436 68.421 0.00 0.00 44.43 4.18
1409 5062 0.464554 GGAATGTACTGGAGGCTGCC 60.465 60.000 11.65 11.65 0.00 4.85
1550 5203 0.815734 GCAGGAGCAACGAGGTACTA 59.184 55.000 0.00 0.00 36.55 1.82
1552 5205 2.353406 GCAGGAGCAACGAGGTACTAAA 60.353 50.000 0.00 0.00 36.55 1.85
1554 5207 4.441079 GCAGGAGCAACGAGGTACTAAATA 60.441 45.833 0.00 0.00 36.55 1.40
1556 5209 4.954826 AGGAGCAACGAGGTACTAAATACT 59.045 41.667 0.00 0.00 41.55 2.12
1558 5211 5.259832 AGCAACGAGGTACTAAATACTCC 57.740 43.478 0.00 0.00 41.55 3.85
1560 5213 5.041940 GCAACGAGGTACTAAATACTCCAG 58.958 45.833 0.00 0.00 41.55 3.86
1564 5217 5.948162 ACGAGGTACTAAATACTCCAGACAA 59.052 40.000 0.00 0.00 41.55 3.18
1565 5218 6.606395 ACGAGGTACTAAATACTCCAGACAAT 59.394 38.462 0.00 0.00 41.55 2.71
1567 5220 7.648510 CGAGGTACTAAATACTCCAGACAATTC 59.351 40.741 0.00 0.00 41.55 2.17
1577 5230 9.988815 AATACTCCAGACAATTCATATGTAGTC 57.011 33.333 1.90 6.98 0.00 2.59
1578 5231 6.821388 ACTCCAGACAATTCATATGTAGTCC 58.179 40.000 1.90 0.00 0.00 3.85
1579 5232 5.842907 TCCAGACAATTCATATGTAGTCCG 58.157 41.667 1.90 0.42 0.00 4.79
1580 5233 5.362717 TCCAGACAATTCATATGTAGTCCGT 59.637 40.000 1.90 0.00 0.00 4.69
1581 5234 6.548251 TCCAGACAATTCATATGTAGTCCGTA 59.452 38.462 1.90 0.00 0.00 4.02
1582 5235 7.232737 TCCAGACAATTCATATGTAGTCCGTAT 59.767 37.037 1.90 0.00 0.00 3.06
1583 5236 7.872993 CCAGACAATTCATATGTAGTCCGTATT 59.127 37.037 1.90 0.00 0.00 1.89
1584 5237 8.703336 CAGACAATTCATATGTAGTCCGTATTG 58.297 37.037 1.90 0.00 0.00 1.90
1585 5238 8.638873 AGACAATTCATATGTAGTCCGTATTGA 58.361 33.333 1.90 0.00 0.00 2.57
1586 5239 9.256477 GACAATTCATATGTAGTCCGTATTGAA 57.744 33.333 1.90 0.00 0.00 2.69
1587 5240 9.607988 ACAATTCATATGTAGTCCGTATTGAAA 57.392 29.630 1.90 0.00 0.00 2.69
1591 5244 9.692749 TTCATATGTAGTCCGTATTGAAATCTC 57.307 33.333 1.90 0.00 0.00 2.75
1592 5245 9.078990 TCATATGTAGTCCGTATTGAAATCTCT 57.921 33.333 1.90 0.00 0.00 3.10
1597 5250 9.932207 TGTAGTCCGTATTGAAATCTCTAAAAA 57.068 29.630 0.00 0.00 0.00 1.94
1599 5252 8.494016 AGTCCGTATTGAAATCTCTAAAAAGG 57.506 34.615 0.00 0.00 0.00 3.11
1600 5253 7.065923 AGTCCGTATTGAAATCTCTAAAAAGGC 59.934 37.037 0.00 0.00 0.00 4.35
1601 5254 7.065923 GTCCGTATTGAAATCTCTAAAAAGGCT 59.934 37.037 0.00 0.00 0.00 4.58
1602 5255 7.610305 TCCGTATTGAAATCTCTAAAAAGGCTT 59.390 33.333 0.00 0.00 0.00 4.35
1603 5256 8.889717 CCGTATTGAAATCTCTAAAAAGGCTTA 58.110 33.333 0.00 0.00 0.00 3.09
1620 5273 7.745620 AAGGCTTATATTTAGAAACGGATGG 57.254 36.000 0.00 0.00 0.00 3.51
1621 5274 7.074653 AGGCTTATATTTAGAAACGGATGGA 57.925 36.000 0.00 0.00 0.00 3.41
1622 5275 7.162082 AGGCTTATATTTAGAAACGGATGGAG 58.838 38.462 0.00 0.00 0.00 3.86
1623 5276 6.935208 GGCTTATATTTAGAAACGGATGGAGT 59.065 38.462 0.00 0.00 0.00 3.85
1624 5277 8.092687 GGCTTATATTTAGAAACGGATGGAGTA 58.907 37.037 0.00 0.00 0.00 2.59
1655 5308 7.363268 GGAAGCACCAAATCTTATTGTGATCTT 60.363 37.037 0.00 0.00 38.79 2.40
1657 5310 8.218338 AGCACCAAATCTTATTGTGATCTTAG 57.782 34.615 0.00 0.00 0.00 2.18
1659 5312 8.677300 GCACCAAATCTTATTGTGATCTTAGAA 58.323 33.333 0.00 0.00 0.00 2.10
1661 5314 9.178758 ACCAAATCTTATTGTGATCTTAGAACC 57.821 33.333 0.00 0.00 0.00 3.62
1662 5315 8.624776 CCAAATCTTATTGTGATCTTAGAACCC 58.375 37.037 0.00 0.00 0.00 4.11
1664 5317 6.785337 TCTTATTGTGATCTTAGAACCCGA 57.215 37.500 0.00 0.00 0.00 5.14
1812 5466 4.509580 AACCCGGCGGTGGTGTTT 62.510 61.111 26.32 4.80 43.71 2.83
2161 5821 4.184629 GACTACCCTCACATTAGCAAGTG 58.815 47.826 0.00 0.00 37.10 3.16
2184 5846 2.037121 GCAGGCCTCTTTATCCTCTCTC 59.963 54.545 0.00 0.00 0.00 3.20
2353 6020 1.039785 TCGCTGGAGGAGACCATCAG 61.040 60.000 0.00 0.00 39.34 2.90
2427 6094 1.678970 GAGCCATGCCGTTTCCCTT 60.679 57.895 0.00 0.00 0.00 3.95
2497 6170 7.169982 GCACAAGTTCTATAATCGTATCTTGCT 59.830 37.037 0.00 0.00 35.81 3.91
2626 6299 1.609208 AATCAAGTGTTTCTGCGCCT 58.391 45.000 4.18 0.00 0.00 5.52
2753 6427 5.767168 TGTGTGATCATTGTGTTTGTATCCA 59.233 36.000 0.00 0.00 0.00 3.41
2760 6434 8.806429 ATCATTGTGTTTGTATCCACTTGATA 57.194 30.769 0.00 0.00 35.42 2.15
2795 6469 8.686334 GGAGCTAATTAAATTCATCCTTTGTGA 58.314 33.333 0.00 0.00 0.00 3.58
2857 6532 3.913089 GGGACCAAAAGTTGCATTACTG 58.087 45.455 0.00 0.00 0.00 2.74
2860 6535 5.279456 GGGACCAAAAGTTGCATTACTGATT 60.279 40.000 0.00 0.00 0.00 2.57
2861 6536 6.223120 GGACCAAAAGTTGCATTACTGATTT 58.777 36.000 0.00 0.00 0.00 2.17
2862 6537 6.705825 GGACCAAAAGTTGCATTACTGATTTT 59.294 34.615 0.00 0.00 0.00 1.82
2863 6538 7.226523 GGACCAAAAGTTGCATTACTGATTTTT 59.773 33.333 0.00 0.00 0.00 1.94
2864 6539 8.141835 ACCAAAAGTTGCATTACTGATTTTTC 57.858 30.769 0.00 0.00 0.00 2.29
2885 6568 3.053693 TCAACCAACAGCAGCCCTATAAT 60.054 43.478 0.00 0.00 0.00 1.28
2937 6880 4.429108 CACCAAAACATCGAAACCTTTGT 58.571 39.130 0.00 0.00 0.00 2.83
2938 6881 4.267452 CACCAAAACATCGAAACCTTTGTG 59.733 41.667 0.00 0.00 0.00 3.33
3063 7054 1.571457 CTCCTCCTCCTTCACCTCCTA 59.429 57.143 0.00 0.00 0.00 2.94
3081 7072 4.900684 TCCTAATTCATCGTGTTGTTCCA 58.099 39.130 0.00 0.00 0.00 3.53
3137 7128 1.068816 GCGTATTTTTCACCGCAACCT 60.069 47.619 0.00 0.00 45.12 3.50
3177 7168 2.852413 CCAATGACTAACGTCGCACTAG 59.148 50.000 0.00 0.00 43.21 2.57
3190 7181 2.159421 TCGCACTAGTTCAGAACGATCC 60.159 50.000 7.68 0.00 36.23 3.36
3210 7201 1.303398 AGTCTCCTTCTCCGCGACA 60.303 57.895 8.23 0.00 0.00 4.35
3228 7219 2.609916 GACAGTCGTCATCTCGATCTCA 59.390 50.000 0.00 0.00 42.13 3.27
3242 7233 2.879026 CGATCTCAGGACCGATGAACTA 59.121 50.000 0.00 0.00 0.00 2.24
3299 7290 2.668212 CCGCTTTGGCTGGTCGAA 60.668 61.111 0.00 0.00 36.09 3.71
3396 7387 1.024046 CATGCATGTTCCCGGTCGAA 61.024 55.000 18.91 0.00 0.00 3.71
3526 7517 0.759436 GAGGCGGGAGGAGTTGGATA 60.759 60.000 0.00 0.00 0.00 2.59
3531 7522 0.035458 GGGAGGAGTTGGATATGCGG 59.965 60.000 0.00 0.00 0.00 5.69
3566 7557 3.222855 TGGCCTGTTTTGGTGGCG 61.223 61.111 3.32 0.00 46.97 5.69
3567 7558 3.989787 GGCCTGTTTTGGTGGCGG 61.990 66.667 0.00 0.00 46.97 6.13
3568 7559 4.662961 GCCTGTTTTGGTGGCGGC 62.663 66.667 0.00 0.00 37.11 6.53
3569 7560 3.222855 CCTGTTTTGGTGGCGGCA 61.223 61.111 7.97 7.97 0.00 5.69
3570 7561 2.336088 CTGTTTTGGTGGCGGCAG 59.664 61.111 13.91 0.00 0.00 4.85
3571 7562 2.441164 TGTTTTGGTGGCGGCAGT 60.441 55.556 13.91 0.00 0.00 4.40
3583 7574 2.510906 GGCAGTGGCGGTGGATAT 59.489 61.111 0.00 0.00 42.47 1.63
3649 7640 2.818274 GCGAGGTTTGGTAGGGCG 60.818 66.667 0.00 0.00 0.00 6.13
3655 7646 3.627952 TTTGGTAGGGCGGTGCGA 61.628 61.111 0.00 0.00 0.00 5.10
3678 7669 2.356135 GCATGAACCGACTTATGTGGT 58.644 47.619 0.00 0.00 37.68 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.033448 CTAAGCCCCGCACCACAA 59.967 61.111 0.00 0.00 0.00 3.33
34 35 2.925706 TCTAAGCCCCGCACCACA 60.926 61.111 0.00 0.00 0.00 4.17
67 68 1.650912 CACTGCTGTTGCTGACCAC 59.349 57.895 0.00 0.00 40.66 4.16
68 69 1.526686 CCACTGCTGTTGCTGACCA 60.527 57.895 0.00 0.00 40.66 4.02
69 70 2.263741 CCCACTGCTGTTGCTGACC 61.264 63.158 0.00 0.00 40.66 4.02
70 71 2.263741 CCCCACTGCTGTTGCTGAC 61.264 63.158 0.00 0.00 40.66 3.51
71 72 2.113774 CCCCACTGCTGTTGCTGA 59.886 61.111 0.00 0.00 40.66 4.26
72 73 2.987547 CCCCCACTGCTGTTGCTG 60.988 66.667 0.00 0.00 42.70 4.41
86 87 1.335882 CCCTCCTCTTAACGTCCCCC 61.336 65.000 0.00 0.00 0.00 5.40
87 88 1.335882 CCCCTCCTCTTAACGTCCCC 61.336 65.000 0.00 0.00 0.00 4.81
88 89 1.969200 GCCCCTCCTCTTAACGTCCC 61.969 65.000 0.00 0.00 0.00 4.46
89 90 1.521141 GCCCCTCCTCTTAACGTCC 59.479 63.158 0.00 0.00 0.00 4.79
90 91 1.141234 CGCCCCTCCTCTTAACGTC 59.859 63.158 0.00 0.00 0.00 4.34
91 92 1.304713 TCGCCCCTCCTCTTAACGT 60.305 57.895 0.00 0.00 0.00 3.99
92 93 1.141234 GTCGCCCCTCCTCTTAACG 59.859 63.158 0.00 0.00 0.00 3.18
93 94 1.141234 CGTCGCCCCTCCTCTTAAC 59.859 63.158 0.00 0.00 0.00 2.01
94 95 1.000521 TCGTCGCCCCTCCTCTTAA 60.001 57.895 0.00 0.00 0.00 1.85
95 96 1.453379 CTCGTCGCCCCTCCTCTTA 60.453 63.158 0.00 0.00 0.00 2.10
96 97 2.756283 CTCGTCGCCCCTCCTCTT 60.756 66.667 0.00 0.00 0.00 2.85
97 98 4.824515 CCTCGTCGCCCCTCCTCT 62.825 72.222 0.00 0.00 0.00 3.69
225 503 0.685097 CTTCCTCCCAACCGACTTCA 59.315 55.000 0.00 0.00 0.00 3.02
254 532 1.173043 TCCGCATCCAACCATTCAAC 58.827 50.000 0.00 0.00 0.00 3.18
255 533 2.023673 GATCCGCATCCAACCATTCAA 58.976 47.619 0.00 0.00 0.00 2.69
301 579 2.005188 CGTGAAAGAACGCTTCACAC 57.995 50.000 14.04 11.04 37.66 3.82
326 604 8.555896 TCATTACTGGGGAGTGTATAAACATA 57.444 34.615 0.00 0.00 38.08 2.29
334 612 5.525484 ACACTATCATTACTGGGGAGTGTA 58.475 41.667 11.26 0.00 43.05 2.90
337 615 6.724905 GGTATACACTATCATTACTGGGGAGT 59.275 42.308 5.01 0.00 0.00 3.85
372 654 1.362237 TGGGATGGAGGGAGCATTTTT 59.638 47.619 0.00 0.00 0.00 1.94
373 655 1.009997 TGGGATGGAGGGAGCATTTT 58.990 50.000 0.00 0.00 0.00 1.82
374 656 1.238615 ATGGGATGGAGGGAGCATTT 58.761 50.000 0.00 0.00 0.00 2.32
375 657 2.138535 TATGGGATGGAGGGAGCATT 57.861 50.000 0.00 0.00 0.00 3.56
376 658 2.138535 TTATGGGATGGAGGGAGCAT 57.861 50.000 0.00 0.00 0.00 3.79
377 659 2.138535 ATTATGGGATGGAGGGAGCA 57.861 50.000 0.00 0.00 0.00 4.26
378 660 5.667626 TCTTATATTATGGGATGGAGGGAGC 59.332 44.000 0.00 0.00 0.00 4.70
379 661 6.673978 TGTCTTATATTATGGGATGGAGGGAG 59.326 42.308 0.00 0.00 0.00 4.30
380 662 6.443849 GTGTCTTATATTATGGGATGGAGGGA 59.556 42.308 0.00 0.00 0.00 4.20
381 663 6.215431 TGTGTCTTATATTATGGGATGGAGGG 59.785 42.308 0.00 0.00 0.00 4.30
382 664 7.257790 TGTGTCTTATATTATGGGATGGAGG 57.742 40.000 0.00 0.00 0.00 4.30
383 665 9.823647 GTATGTGTCTTATATTATGGGATGGAG 57.176 37.037 0.00 0.00 0.00 3.86
384 666 9.332713 TGTATGTGTCTTATATTATGGGATGGA 57.667 33.333 0.00 0.00 0.00 3.41
385 667 9.958180 TTGTATGTGTCTTATATTATGGGATGG 57.042 33.333 0.00 0.00 0.00 3.51
394 676 9.653287 CCCGTCATATTGTATGTGTCTTATATT 57.347 33.333 0.00 0.00 0.00 1.28
395 677 9.031537 TCCCGTCATATTGTATGTGTCTTATAT 57.968 33.333 0.00 0.00 0.00 0.86
396 678 8.301720 GTCCCGTCATATTGTATGTGTCTTATA 58.698 37.037 0.00 0.00 0.00 0.98
397 679 7.152645 GTCCCGTCATATTGTATGTGTCTTAT 58.847 38.462 0.00 0.00 0.00 1.73
398 680 6.509656 GTCCCGTCATATTGTATGTGTCTTA 58.490 40.000 0.00 0.00 0.00 2.10
399 681 5.357257 GTCCCGTCATATTGTATGTGTCTT 58.643 41.667 0.00 0.00 0.00 3.01
400 682 4.499188 CGTCCCGTCATATTGTATGTGTCT 60.499 45.833 0.00 0.00 0.00 3.41
401 683 3.734231 CGTCCCGTCATATTGTATGTGTC 59.266 47.826 0.00 0.00 0.00 3.67
402 684 3.131577 ACGTCCCGTCATATTGTATGTGT 59.868 43.478 0.00 0.00 33.69 3.72
403 685 3.713288 ACGTCCCGTCATATTGTATGTG 58.287 45.455 0.00 0.00 33.69 3.21
404 686 4.581824 AGTACGTCCCGTCATATTGTATGT 59.418 41.667 0.00 0.00 41.54 2.29
405 687 5.117355 AGTACGTCCCGTCATATTGTATG 57.883 43.478 0.00 0.00 41.54 2.39
406 688 5.779529 AAGTACGTCCCGTCATATTGTAT 57.220 39.130 0.00 0.00 41.54 2.29
407 689 6.094742 TGTTAAGTACGTCCCGTCATATTGTA 59.905 38.462 0.00 0.00 41.54 2.41
408 690 5.105797 TGTTAAGTACGTCCCGTCATATTGT 60.106 40.000 0.00 0.00 41.54 2.71
409 691 5.342433 TGTTAAGTACGTCCCGTCATATTG 58.658 41.667 0.00 0.00 41.54 1.90
410 692 5.581126 TGTTAAGTACGTCCCGTCATATT 57.419 39.130 0.00 0.00 41.54 1.28
411 693 5.581126 TTGTTAAGTACGTCCCGTCATAT 57.419 39.130 0.00 0.00 41.54 1.78
412 694 5.048083 ACTTTGTTAAGTACGTCCCGTCATA 60.048 40.000 0.00 0.00 42.73 2.15
413 695 3.940209 TTGTTAAGTACGTCCCGTCAT 57.060 42.857 0.00 0.00 41.54 3.06
414 696 3.068024 ACTTTGTTAAGTACGTCCCGTCA 59.932 43.478 0.00 0.00 42.73 4.35
415 697 3.426525 CACTTTGTTAAGTACGTCCCGTC 59.573 47.826 0.00 0.00 42.67 4.79
416 698 3.383761 CACTTTGTTAAGTACGTCCCGT 58.616 45.455 0.00 0.00 42.67 5.28
417 699 2.156310 GCACTTTGTTAAGTACGTCCCG 59.844 50.000 0.00 0.00 42.67 5.14
418 700 2.481568 GGCACTTTGTTAAGTACGTCCC 59.518 50.000 0.00 0.00 42.67 4.46
419 701 2.156310 CGGCACTTTGTTAAGTACGTCC 59.844 50.000 0.00 0.00 42.67 4.79
420 702 2.156310 CCGGCACTTTGTTAAGTACGTC 59.844 50.000 0.00 0.00 42.67 4.34
421 703 2.137523 CCGGCACTTTGTTAAGTACGT 58.862 47.619 0.00 0.00 42.67 3.57
422 704 1.136169 GCCGGCACTTTGTTAAGTACG 60.136 52.381 24.80 0.00 42.67 3.67
433 715 2.287457 TAGTTATCGCGCCGGCACTT 62.287 55.000 28.98 9.68 39.92 3.16
507 789 6.531948 ACATAGACTATTTGAAACTCGAGCAC 59.468 38.462 13.61 4.73 0.00 4.40
531 813 4.738740 GGAGCACGCCGATATATTGTATAC 59.261 45.833 0.00 0.00 0.00 1.47
595 877 4.621510 CGGAATCTTGATCTGGAACTCACA 60.622 45.833 0.00 0.00 0.00 3.58
658 940 2.166985 GCACACGCACGTACGAAC 59.833 61.111 24.41 12.14 38.36 3.95
669 951 0.667184 GGAAATTTGCAGGGCACACG 60.667 55.000 4.63 0.00 38.71 4.49
955 1275 0.535102 ACGGGCACAAAAGGAGTCAG 60.535 55.000 0.00 0.00 0.00 3.51
1163 1892 1.347564 CATCGCGTCGTAGTCGAGT 59.652 57.895 5.77 0.00 46.96 4.18
1552 5205 8.589338 GGACTACATATGAATTGTCTGGAGTAT 58.411 37.037 10.38 0.00 0.00 2.12
1554 5207 6.461648 CGGACTACATATGAATTGTCTGGAGT 60.462 42.308 10.38 0.00 0.00 3.85
1556 5209 5.362717 ACGGACTACATATGAATTGTCTGGA 59.637 40.000 10.38 0.00 35.75 3.86
1558 5211 8.703336 CAATACGGACTACATATGAATTGTCTG 58.297 37.037 10.38 16.38 37.00 3.51
1560 5213 8.812147 TCAATACGGACTACATATGAATTGTC 57.188 34.615 10.38 10.77 0.00 3.18
1565 5218 9.692749 GAGATTTCAATACGGACTACATATGAA 57.307 33.333 10.38 0.00 0.00 2.57
1573 5226 9.595823 CCTTTTTAGAGATTTCAATACGGACTA 57.404 33.333 0.00 0.00 0.00 2.59
1576 5229 7.110155 AGCCTTTTTAGAGATTTCAATACGGA 58.890 34.615 0.00 0.00 0.00 4.69
1577 5230 7.321745 AGCCTTTTTAGAGATTTCAATACGG 57.678 36.000 0.00 0.00 0.00 4.02
1594 5247 8.630037 CCATCCGTTTCTAAATATAAGCCTTTT 58.370 33.333 0.00 0.00 0.00 2.27
1595 5248 7.996644 TCCATCCGTTTCTAAATATAAGCCTTT 59.003 33.333 0.00 0.00 0.00 3.11
1596 5249 7.514721 TCCATCCGTTTCTAAATATAAGCCTT 58.485 34.615 0.00 0.00 0.00 4.35
1597 5250 7.074653 TCCATCCGTTTCTAAATATAAGCCT 57.925 36.000 0.00 0.00 0.00 4.58
1598 5251 6.935208 ACTCCATCCGTTTCTAAATATAAGCC 59.065 38.462 0.00 0.00 0.00 4.35
1599 5252 7.964604 ACTCCATCCGTTTCTAAATATAAGC 57.035 36.000 0.00 0.00 0.00 3.09
1600 5253 9.141400 GCTACTCCATCCGTTTCTAAATATAAG 57.859 37.037 0.00 0.00 0.00 1.73
1601 5254 8.644216 TGCTACTCCATCCGTTTCTAAATATAA 58.356 33.333 0.00 0.00 0.00 0.98
1602 5255 8.185506 TGCTACTCCATCCGTTTCTAAATATA 57.814 34.615 0.00 0.00 0.00 0.86
1603 5256 7.062749 TGCTACTCCATCCGTTTCTAAATAT 57.937 36.000 0.00 0.00 0.00 1.28
1604 5257 6.462487 CCTGCTACTCCATCCGTTTCTAAATA 60.462 42.308 0.00 0.00 0.00 1.40
1605 5258 5.353394 TGCTACTCCATCCGTTTCTAAAT 57.647 39.130 0.00 0.00 0.00 1.40
1606 5259 4.382685 CCTGCTACTCCATCCGTTTCTAAA 60.383 45.833 0.00 0.00 0.00 1.85
1607 5260 3.132289 CCTGCTACTCCATCCGTTTCTAA 59.868 47.826 0.00 0.00 0.00 2.10
1608 5261 2.693591 CCTGCTACTCCATCCGTTTCTA 59.306 50.000 0.00 0.00 0.00 2.10
1609 5262 1.482593 CCTGCTACTCCATCCGTTTCT 59.517 52.381 0.00 0.00 0.00 2.52
1610 5263 1.473434 CCCTGCTACTCCATCCGTTTC 60.473 57.143 0.00 0.00 0.00 2.78
1611 5264 0.541863 CCCTGCTACTCCATCCGTTT 59.458 55.000 0.00 0.00 0.00 3.60
1612 5265 0.325296 TCCCTGCTACTCCATCCGTT 60.325 55.000 0.00 0.00 0.00 4.44
1613 5266 0.325296 TTCCCTGCTACTCCATCCGT 60.325 55.000 0.00 0.00 0.00 4.69
1614 5267 0.390860 CTTCCCTGCTACTCCATCCG 59.609 60.000 0.00 0.00 0.00 4.18
1615 5268 0.107643 GCTTCCCTGCTACTCCATCC 59.892 60.000 0.00 0.00 0.00 3.51
1616 5269 0.833287 TGCTTCCCTGCTACTCCATC 59.167 55.000 0.00 0.00 0.00 3.51
1617 5270 0.543749 GTGCTTCCCTGCTACTCCAT 59.456 55.000 0.00 0.00 0.00 3.41
1618 5271 1.553690 GGTGCTTCCCTGCTACTCCA 61.554 60.000 0.00 0.00 0.00 3.86
1619 5272 1.222113 GGTGCTTCCCTGCTACTCC 59.778 63.158 0.00 0.00 0.00 3.85
1620 5273 0.324943 TTGGTGCTTCCCTGCTACTC 59.675 55.000 0.00 0.00 34.77 2.59
1621 5274 0.771127 TTTGGTGCTTCCCTGCTACT 59.229 50.000 0.00 0.00 34.77 2.57
1622 5275 1.745653 GATTTGGTGCTTCCCTGCTAC 59.254 52.381 0.00 0.00 34.77 3.58
1623 5276 1.635487 AGATTTGGTGCTTCCCTGCTA 59.365 47.619 0.00 0.00 34.77 3.49
1624 5277 0.407139 AGATTTGGTGCTTCCCTGCT 59.593 50.000 0.00 0.00 34.77 4.24
1655 5308 9.287373 ACAAGTTTATTAATTGTTCGGGTTCTA 57.713 29.630 0.00 0.00 33.49 2.10
1657 5310 8.077386 TCACAAGTTTATTAATTGTTCGGGTTC 58.923 33.333 0.00 0.00 35.04 3.62
1659 5312 7.513371 TCACAAGTTTATTAATTGTTCGGGT 57.487 32.000 0.00 0.00 35.04 5.28
1688 5341 1.952296 CAGAGCCATGGCCAAGATAAC 59.048 52.381 33.14 13.59 43.17 1.89
2161 5821 0.882484 GAGGATAAAGAGGCCTGCGC 60.882 60.000 12.00 0.00 30.70 6.09
2231 5898 6.219302 CAATTTTGCCAGAGTGAATTGAAC 57.781 37.500 0.00 0.00 39.05 3.18
2353 6020 1.444553 CAGAACTCGACGCTGTCCC 60.445 63.158 0.00 0.00 0.00 4.46
2427 6094 7.732025 TGAACCTAAATCTTGTTGTAGACAGA 58.268 34.615 0.00 0.00 39.94 3.41
2497 6170 1.669760 GGATTGGTGCGAACCGACA 60.670 57.895 3.97 0.00 0.00 4.35
2626 6299 4.700268 TGTCGTTTGGTAGATAGCGTTA 57.300 40.909 0.00 0.00 0.00 3.18
2685 6359 6.717084 AGGAAATGCTTTATTATAGGGCTGTC 59.283 38.462 0.00 0.00 0.00 3.51
2718 6392 7.147776 ACACAATGATCACACATCTGATCTCTA 60.148 37.037 0.00 0.00 44.82 2.43
2753 6427 8.814038 AATTAGCTCCAAATGAAGTATCAAGT 57.186 30.769 0.00 0.00 39.49 3.16
2769 6443 8.686334 TCACAAAGGATGAATTTAATTAGCTCC 58.314 33.333 0.00 0.00 0.00 4.70
2786 6460 6.377146 GTGCCCTATTATTTTCTCACAAAGGA 59.623 38.462 0.00 0.00 0.00 3.36
2821 6496 8.664992 ACTTTTGGTCCCCAATAACAAATAAAT 58.335 29.630 0.00 0.00 43.55 1.40
2855 6530 3.492011 GCTGCTGTTGGTTGAAAAATCAG 59.508 43.478 0.00 0.00 0.00 2.90
2856 6531 3.456280 GCTGCTGTTGGTTGAAAAATCA 58.544 40.909 0.00 0.00 0.00 2.57
2857 6532 2.802247 GGCTGCTGTTGGTTGAAAAATC 59.198 45.455 0.00 0.00 0.00 2.17
2860 6535 0.463620 GGGCTGCTGTTGGTTGAAAA 59.536 50.000 0.00 0.00 0.00 2.29
2861 6536 0.396974 AGGGCTGCTGTTGGTTGAAA 60.397 50.000 0.00 0.00 0.00 2.69
2862 6537 0.476338 TAGGGCTGCTGTTGGTTGAA 59.524 50.000 0.00 0.00 0.00 2.69
2863 6538 0.698238 ATAGGGCTGCTGTTGGTTGA 59.302 50.000 0.00 0.00 0.00 3.18
2864 6539 2.418368 TATAGGGCTGCTGTTGGTTG 57.582 50.000 0.00 0.00 0.00 3.77
2937 6880 5.771469 AGTTTGCATGTTTGATCGAATTCA 58.229 33.333 6.22 0.00 0.00 2.57
2938 6881 6.695292 AAGTTTGCATGTTTGATCGAATTC 57.305 33.333 0.00 0.00 0.00 2.17
2983 6926 5.901884 CGACATTGACTGTGACAACTTTAAC 59.098 40.000 0.00 0.00 38.54 2.01
3081 7072 2.025155 AGTATGAGTTCTCGGCATCGT 58.975 47.619 0.00 0.00 37.69 3.73
3135 7126 2.621998 GGATGAGGTTGCATGATGAAGG 59.378 50.000 0.00 0.00 0.00 3.46
3137 7128 2.025131 TGGGATGAGGTTGCATGATGAA 60.025 45.455 0.00 0.00 0.00 2.57
3177 7168 2.478200 GGAGACTCGGATCGTTCTGAAC 60.478 54.545 10.48 10.48 36.81 3.18
3190 7181 2.107292 TCGCGGAGAAGGAGACTCG 61.107 63.158 6.13 0.00 42.68 4.18
3210 7201 2.158885 TCCTGAGATCGAGATGACGACT 60.159 50.000 0.00 0.00 44.84 4.18
3228 7219 1.067212 GATGCGTAGTTCATCGGTCCT 59.933 52.381 0.00 0.00 32.14 3.85
3242 7233 1.016130 CAAGACTCAAGCCGATGCGT 61.016 55.000 0.00 0.00 44.33 5.24
3396 7387 2.514458 AGCGGGATTCCAGACATTTT 57.486 45.000 7.06 0.00 0.00 1.82
3499 7490 2.043450 CTCCCGCCTCTCTCTGGT 60.043 66.667 0.00 0.00 0.00 4.00
3500 7491 2.837291 CCTCCCGCCTCTCTCTGG 60.837 72.222 0.00 0.00 0.00 3.86
3526 7517 2.124151 GACCCCTCAATGCCGCAT 60.124 61.111 0.00 0.00 0.00 4.73
3531 7522 2.511600 CCGTCGACCCCTCAATGC 60.512 66.667 10.58 0.00 0.00 3.56
3556 7547 3.222855 CCACTGCCGCCACCAAAA 61.223 61.111 0.00 0.00 0.00 2.44
3566 7557 0.320771 CTATATCCACCGCCACTGCC 60.321 60.000 0.00 0.00 0.00 4.85
3567 7558 0.393077 ACTATATCCACCGCCACTGC 59.607 55.000 0.00 0.00 0.00 4.40
3568 7559 1.270305 CCACTATATCCACCGCCACTG 60.270 57.143 0.00 0.00 0.00 3.66
3569 7560 1.048601 CCACTATATCCACCGCCACT 58.951 55.000 0.00 0.00 0.00 4.00
3570 7561 0.756903 ACCACTATATCCACCGCCAC 59.243 55.000 0.00 0.00 0.00 5.01
3571 7562 1.140052 CAACCACTATATCCACCGCCA 59.860 52.381 0.00 0.00 0.00 5.69
3583 7574 2.031919 CGGCTGCCACAACCACTA 59.968 61.111 20.29 0.00 0.00 2.74
3672 7663 3.025189 TATGCGACCGCCACCACAT 62.025 57.895 12.08 0.24 41.09 3.21
3678 7669 4.071875 AACCGTATGCGACCGCCA 62.072 61.111 12.08 0.71 41.33 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.