Multiple sequence alignment - TraesCS5B01G267300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G267300 chr5B 100.000 4115 0 0 1 4115 452631729 452635843 0.000000e+00 7600.0
1 TraesCS5B01G267300 chr5B 95.830 2374 43 24 923 3282 451632722 451630391 0.000000e+00 3784.0
2 TraesCS5B01G267300 chr5B 99.697 1649 4 1 923 2570 452233812 452232164 0.000000e+00 3016.0
3 TraesCS5B01G267300 chr5B 99.536 431 2 0 2112 2542 452232153 452231723 0.000000e+00 785.0
4 TraesCS5B01G267300 chr5B 84.653 808 61 34 2577 3360 452231722 452230954 0.000000e+00 747.0
5 TraesCS5B01G267300 chr5B 79.070 301 49 10 3355 3644 506971408 506971111 1.170000e-45 195.0
6 TraesCS5B01G267300 chr5B 81.176 170 29 3 3709 3877 404151047 404151214 2.580000e-27 134.0
7 TraesCS5B01G267300 chr5B 80.488 123 19 5 3546 3666 541334906 541335025 5.670000e-14 89.8
8 TraesCS5B01G267300 chr5D 94.566 2466 64 32 923 3366 378475388 378472971 0.000000e+00 3747.0
9 TraesCS5B01G267300 chr5D 97.708 1658 30 4 1 1653 378612817 378614471 0.000000e+00 2844.0
10 TraesCS5B01G267300 chr5D 97.408 1119 21 4 3004 4115 378614472 378615589 0.000000e+00 1899.0
11 TraesCS5B01G267300 chr5D 85.629 167 21 3 3712 3877 237600815 237600979 5.470000e-39 172.0
12 TraesCS5B01G267300 chr5D 85.629 167 21 2 3712 3877 237602720 237602884 5.470000e-39 172.0
13 TraesCS5B01G267300 chr5D 81.437 167 27 3 3712 3877 488923045 488922882 2.580000e-27 134.0
14 TraesCS5B01G267300 chr6B 84.372 979 123 14 1567 2524 599399167 599398198 0.000000e+00 933.0
15 TraesCS5B01G267300 chr6B 90.485 515 49 0 961 1475 599399680 599399166 0.000000e+00 680.0
16 TraesCS5B01G267300 chr6B 81.644 365 39 6 99 463 4831233 4830897 1.130000e-70 278.0
17 TraesCS5B01G267300 chr6B 84.431 167 23 3 3712 3877 200034811 200034975 1.180000e-35 161.0
18 TraesCS5B01G267300 chr6B 79.902 204 32 8 3917 4115 624884398 624884597 1.540000e-29 141.0
19 TraesCS5B01G267300 chr6D 83.810 840 106 15 1696 2524 400463172 400462352 0.000000e+00 771.0
20 TraesCS5B01G267300 chr6D 85.816 564 61 12 928 1475 400470985 400470425 7.670000e-162 580.0
21 TraesCS5B01G267300 chr6D 82.524 412 53 8 90 500 1971670 1972063 1.100000e-90 344.0
22 TraesCS5B01G267300 chr6D 76.068 351 62 11 3374 3712 418459325 418458985 3.290000e-36 163.0
23 TraesCS5B01G267300 chr6D 82.576 132 20 3 3556 3686 402803401 402803530 3.360000e-21 113.0
24 TraesCS5B01G267300 chr6D 82.243 107 16 3 3555 3660 12465980 12466084 5.670000e-14 89.8
25 TraesCS5B01G267300 chr6D 92.593 54 2 2 506 558 34808969 34808917 4.410000e-10 76.8
26 TraesCS5B01G267300 chr6D 90.000 60 3 3 506 563 443958566 443958508 1.590000e-09 75.0
27 TraesCS5B01G267300 chr6A 85.271 516 62 7 1973 2482 546476772 546476265 1.700000e-143 520.0
28 TraesCS5B01G267300 chr3D 88.406 207 19 5 3911 4115 484453462 484453665 1.140000e-60 244.0
29 TraesCS5B01G267300 chr3D 83.663 202 27 6 3917 4115 134609900 134610098 7.020000e-43 185.0
30 TraesCS5B01G267300 chr3D 78.082 146 27 4 3733 3876 18550502 18550644 2.040000e-13 87.9
31 TraesCS5B01G267300 chr7D 79.037 353 55 8 115 457 603276032 603276375 1.490000e-54 224.0
32 TraesCS5B01G267300 chr7D 92.727 55 3 1 506 560 621487640 621487587 1.230000e-10 78.7
33 TraesCS5B01G267300 chr5A 85.388 219 27 4 3901 4115 154233179 154232962 5.350000e-54 222.0
34 TraesCS5B01G267300 chr3B 76.819 371 57 15 114 457 795195563 795195195 9.090000e-42 182.0
35 TraesCS5B01G267300 chr3B 77.640 161 31 4 3718 3876 29300215 29300372 4.380000e-15 93.5
36 TraesCS5B01G267300 chr1D 82.587 201 30 5 3917 4115 428689399 428689202 5.470000e-39 172.0
37 TraesCS5B01G267300 chr1D 76.667 330 59 17 3395 3712 42982732 42982409 2.540000e-37 167.0
38 TraesCS5B01G267300 chr1B 81.683 202 31 6 3917 4115 426675663 426675465 3.290000e-36 163.0
39 TraesCS5B01G267300 chr1B 79.803 203 34 7 3917 4115 680224923 680224724 1.540000e-29 141.0
40 TraesCS5B01G267300 chr4D 83.832 167 24 3 3712 3877 40117284 40117120 5.510000e-34 156.0
41 TraesCS5B01G267300 chr2D 75.455 330 65 14 3395 3712 118118929 118118604 3.310000e-31 147.0
42 TraesCS5B01G267300 chr2D 89.655 58 6 0 513 570 58513969 58514026 1.590000e-09 75.0
43 TraesCS5B01G267300 chr2B 81.034 174 31 2 3546 3719 111424499 111424328 1.990000e-28 137.0
44 TraesCS5B01G267300 chr2B 89.831 59 5 1 503 561 672329837 672329894 1.590000e-09 75.0
45 TraesCS5B01G267300 chr4B 82.069 145 24 2 3973 4115 626436909 626436765 5.590000e-24 122.0
46 TraesCS5B01G267300 chr4B 91.071 56 3 2 506 560 53072366 53072312 1.590000e-09 75.0
47 TraesCS5B01G267300 chr4B 89.474 57 5 1 503 559 21543486 21543541 2.050000e-08 71.3
48 TraesCS5B01G267300 chr7B 78.404 213 27 11 3917 4115 337127451 337127658 2.010000e-23 121.0
49 TraesCS5B01G267300 chrUn 83.962 106 15 2 109 212 38134299 38134404 2.620000e-17 100.0
50 TraesCS5B01G267300 chr4A 91.228 57 4 1 503 559 641764430 641764485 4.410000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G267300 chr5B 452631729 452635843 4114 False 7600.0 7600 100.000000 1 4115 1 chr5B.!!$F2 4114
1 TraesCS5B01G267300 chr5B 451630391 451632722 2331 True 3784.0 3784 95.830000 923 3282 1 chr5B.!!$R1 2359
2 TraesCS5B01G267300 chr5B 452230954 452233812 2858 True 1516.0 3016 94.628667 923 3360 3 chr5B.!!$R3 2437
3 TraesCS5B01G267300 chr5D 378472971 378475388 2417 True 3747.0 3747 94.566000 923 3366 1 chr5D.!!$R1 2443
4 TraesCS5B01G267300 chr5D 378612817 378615589 2772 False 2371.5 2844 97.558000 1 4115 2 chr5D.!!$F2 4114
5 TraesCS5B01G267300 chr6B 599398198 599399680 1482 True 806.5 933 87.428500 961 2524 2 chr6B.!!$R2 1563
6 TraesCS5B01G267300 chr6D 400462352 400463172 820 True 771.0 771 83.810000 1696 2524 1 chr6D.!!$R2 828
7 TraesCS5B01G267300 chr6D 400470425 400470985 560 True 580.0 580 85.816000 928 1475 1 chr6D.!!$R3 547
8 TraesCS5B01G267300 chr6A 546476265 546476772 507 True 520.0 520 85.271000 1973 2482 1 chr6A.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.250901 GAAGCTCAAAGGGCTGGTCA 60.251 55.000 0.0 0.0 40.19 4.02 F
149 150 0.407139 AAGCTCAAAGGGCTGGTCAT 59.593 50.000 0.0 0.0 40.19 3.06 F
457 458 0.963962 TTCGTCCTCACGGCTTACTT 59.036 50.000 0.0 0.0 46.70 2.24 F
834 840 1.475682 GAGGAAGGAGCCATGCAAAAG 59.524 52.381 0.0 0.0 0.00 2.27 F
2804 3282 0.447801 CACGGTCAAATGCCTGCTAC 59.552 55.000 0.0 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 2195 1.332195 CCCTCATCGACCAGCAGATA 58.668 55.000 0.0 0.0 0.0 1.98 R
2310 2341 4.517285 TCTTTCTCAAGTCAACAGCAAGT 58.483 39.130 0.0 0.0 0.0 3.16 R
2571 2612 4.038763 CGCTAATCCCTACACTACCATGAA 59.961 45.833 0.0 0.0 0.0 2.57 R
2966 3455 1.239347 GGCCTTCCCTATCAAATCGC 58.761 55.000 0.0 0.0 0.0 4.58 R
3892 4406 0.961019 TCCATTGCAACCTTGTCAGC 59.039 50.000 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.153862 GCGAAAATCGGCATTGGCA 60.154 52.632 11.10 0.00 43.71 4.92
148 149 0.250901 GAAGCTCAAAGGGCTGGTCA 60.251 55.000 0.00 0.00 40.19 4.02
149 150 0.407139 AAGCTCAAAGGGCTGGTCAT 59.593 50.000 0.00 0.00 40.19 3.06
304 305 1.278127 TCAGTTTACACCAGGCTAGCC 59.722 52.381 27.19 27.19 0.00 3.93
362 363 3.853831 TTGCCGACGTTGTTCTCTATA 57.146 42.857 1.30 0.00 0.00 1.31
441 442 6.236017 TGTAAGCTGAATACCTTTTGTTCG 57.764 37.500 0.00 0.00 0.00 3.95
457 458 0.963962 TTCGTCCTCACGGCTTACTT 59.036 50.000 0.00 0.00 46.70 2.24
503 504 4.968259 TCTACTGTTTGGCATGTACTGTT 58.032 39.130 10.85 0.69 0.00 3.16
505 506 4.568152 ACTGTTTGGCATGTACTGTTTC 57.432 40.909 0.00 0.00 0.00 2.78
507 508 5.373222 ACTGTTTGGCATGTACTGTTTCTA 58.627 37.500 0.00 0.00 0.00 2.10
573 574 6.040878 AGTACATTTTAGTGCATACTCGGTC 58.959 40.000 0.00 0.00 38.36 4.79
577 578 7.948357 ACATTTTAGTGCATACTCGGTCTATA 58.052 34.615 0.00 0.00 38.36 1.31
578 579 7.866393 ACATTTTAGTGCATACTCGGTCTATAC 59.134 37.037 0.00 0.00 38.36 1.47
597 598 2.202756 CTCGTAAGCCGTGAGCCC 60.203 66.667 0.00 0.00 45.47 5.19
635 636 4.946157 GGCTTACTGCATGATATTAGGCAT 59.054 41.667 7.31 1.62 45.15 4.40
723 724 3.954258 ACAGGAAGCATAATTACAAGGCC 59.046 43.478 0.00 0.00 0.00 5.19
774 780 3.576982 ACGGACTCATAGTCTCCAAAACA 59.423 43.478 6.99 0.00 44.46 2.83
834 840 1.475682 GAGGAAGGAGCCATGCAAAAG 59.524 52.381 0.00 0.00 0.00 2.27
2167 2195 3.057033 GCAGATTTCAAAGTCACTGCCAT 60.057 43.478 0.00 0.00 42.91 4.40
2310 2341 2.682155 TGGAACGCACAGCATATGTA 57.318 45.000 4.29 0.00 41.41 2.29
2570 2611 5.353938 GCAGATCAATGCATATTTGTTGGT 58.646 37.500 0.00 0.00 45.77 3.67
2571 2612 5.813672 GCAGATCAATGCATATTTGTTGGTT 59.186 36.000 0.00 0.00 45.77 3.67
2668 3144 8.367660 AGTCATCTCAAATAGAGTTGGTAGAA 57.632 34.615 0.00 0.00 44.98 2.10
2804 3282 0.447801 CACGGTCAAATGCCTGCTAC 59.552 55.000 0.00 0.00 0.00 3.58
2845 3323 4.380531 TCACCAGAACAGCTCTTAAACTG 58.619 43.478 0.00 0.00 39.86 3.16
2904 3382 3.411446 TCACAATCAGGGCACAGTTTAG 58.589 45.455 0.00 0.00 0.00 1.85
2915 3396 3.119637 GGCACAGTTTAGTTGTGTGTTGT 60.120 43.478 7.16 0.00 45.89 3.32
2916 3397 4.481463 GCACAGTTTAGTTGTGTGTTGTT 58.519 39.130 7.16 0.00 45.89 2.83
2959 3448 5.767168 AGAGCTCTGTGTTCTTAAAATGCTT 59.233 36.000 17.42 0.00 32.07 3.91
2960 3449 5.766222 AGCTCTGTGTTCTTAAAATGCTTG 58.234 37.500 0.00 0.00 0.00 4.01
2966 3455 7.277539 TCTGTGTTCTTAAAATGCTTGGTTTTG 59.722 33.333 0.00 0.00 31.71 2.44
2967 3456 6.183360 TGTGTTCTTAAAATGCTTGGTTTTGC 60.183 34.615 0.00 0.00 31.71 3.68
2968 3457 5.006165 TGTTCTTAAAATGCTTGGTTTTGCG 59.994 36.000 0.00 0.00 31.71 4.85
2984 3473 1.967319 TGCGATTTGATAGGGAAGGC 58.033 50.000 0.00 0.00 0.00 4.35
2986 3475 1.512926 CGATTTGATAGGGAAGGCCG 58.487 55.000 0.00 0.00 33.83 6.13
2987 3476 1.878102 CGATTTGATAGGGAAGGCCGG 60.878 57.143 0.00 0.00 33.83 6.13
2988 3477 1.420138 GATTTGATAGGGAAGGCCGGA 59.580 52.381 5.05 0.00 33.83 5.14
2989 3478 1.291109 TTTGATAGGGAAGGCCGGAA 58.709 50.000 5.05 0.00 33.83 4.30
2990 3479 0.837272 TTGATAGGGAAGGCCGGAAG 59.163 55.000 5.05 0.00 33.83 3.46
3289 3788 6.127703 TGTTTCATCCTTTGTTTTGTAACGGA 60.128 34.615 0.00 0.00 37.06 4.69
3290 3795 6.452494 TTCATCCTTTGTTTTGTAACGGAA 57.548 33.333 0.00 0.00 37.06 4.30
3317 3822 7.330900 TCTTAAGAGGAACCGTACTGATTAG 57.669 40.000 0.00 0.00 0.00 1.73
3444 3951 5.949354 TGAAATTAGGTCACCCGATTTTGAT 59.051 36.000 6.49 0.00 33.96 2.57
3470 3977 5.525012 GGCTCAACAATTTTTCAAAGCTCTT 59.475 36.000 0.00 0.00 0.00 2.85
3533 4045 8.723942 TTTTTAGAGCCTTACAATGAGATCTC 57.276 34.615 16.21 16.21 0.00 2.75
3543 4055 8.616076 CCTTACAATGAGATCTCCAAATTACAC 58.384 37.037 20.03 0.00 0.00 2.90
3544 4056 8.506168 TTACAATGAGATCTCCAAATTACACC 57.494 34.615 20.03 0.00 0.00 4.16
3555 4067 3.696051 CCAAATTACACCTGGGTCATCTG 59.304 47.826 0.00 0.00 0.00 2.90
3586 4098 4.515191 TCGGGTCAACAATTTCTCAAAGAG 59.485 41.667 0.00 0.00 0.00 2.85
3765 4279 5.159273 ACGCAAAAATTTCCCCACATAAT 57.841 34.783 0.00 0.00 0.00 1.28
3892 4406 0.905357 AACTCTCTGGATGTTCCCGG 59.095 55.000 0.00 0.00 35.03 5.73
3913 4427 2.233271 CTGACAAGGTTGCAATGGAGT 58.767 47.619 0.59 0.00 0.00 3.85
3922 4436 3.800628 GCAATGGAGTGTTGCTTCC 57.199 52.632 3.77 0.00 46.34 3.46
3960 4474 5.491078 ACTCAATTTCACAGGGGTATCCTTA 59.509 40.000 0.00 0.00 45.47 2.69
4029 4543 5.974370 TCCAAACCCTGTCTAACCCTTATAT 59.026 40.000 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 0.391793 CCGCCCTCTCCTTTGACTTC 60.392 60.000 0.00 0.00 0.00 3.01
148 149 5.621193 ACTCTGGTTTATAAATAGCCGCAT 58.379 37.500 0.31 0.00 0.00 4.73
149 150 5.031066 ACTCTGGTTTATAAATAGCCGCA 57.969 39.130 0.31 0.00 0.00 5.69
304 305 3.834373 CCGTCGGCGCAACTAACG 61.834 66.667 10.83 10.83 36.67 3.18
325 326 1.603678 GCAAAGTCTGTTGCCACATGG 60.604 52.381 0.00 0.00 46.69 3.66
345 346 4.025061 AGTCGATATAGAGAACAACGTCGG 60.025 45.833 0.00 0.00 0.00 4.79
362 363 6.447162 TGATGCTCGTGAAAATATAGTCGAT 58.553 36.000 0.00 0.00 0.00 3.59
537 538 6.312180 CACTAAAATGTACTCCTCCCGTAAAC 59.688 42.308 0.00 0.00 0.00 2.01
597 598 5.723135 GCAGTAAGCCGAGTGTTAAAATACG 60.723 44.000 0.00 0.00 37.23 3.06
695 696 8.519526 CCTTGTAATTATGCTTCCTGTTAAACA 58.480 33.333 0.00 0.00 0.00 2.83
723 724 2.432444 TGTATTCCGGCAACCTCTTTG 58.568 47.619 0.00 0.00 38.37 2.77
834 840 6.362248 TCCAAGGCACCTCTATTTATTTACC 58.638 40.000 0.00 0.00 0.00 2.85
2167 2195 1.332195 CCCTCATCGACCAGCAGATA 58.668 55.000 0.00 0.00 0.00 1.98
2310 2341 4.517285 TCTTTCTCAAGTCAACAGCAAGT 58.483 39.130 0.00 0.00 0.00 3.16
2570 2611 5.452776 CGCTAATCCCTACACTACCATGAAA 60.453 44.000 0.00 0.00 0.00 2.69
2571 2612 4.038763 CGCTAATCCCTACACTACCATGAA 59.961 45.833 0.00 0.00 0.00 2.57
2668 3144 2.233271 CCCAATCAGCTGTGTCAAGTT 58.767 47.619 14.67 0.00 0.00 2.66
2804 3282 8.098912 TCTGGTGAGTATTCCATCATCAATATG 58.901 37.037 0.00 0.00 36.18 1.78
2931 3420 8.331742 GCATTTTAAGAACACAGAGCTCTATAC 58.668 37.037 17.75 6.69 0.00 1.47
2935 3424 5.312079 AGCATTTTAAGAACACAGAGCTCT 58.688 37.500 11.45 11.45 0.00 4.09
2944 3433 5.006165 CGCAAAACCAAGCATTTTAAGAACA 59.994 36.000 0.00 0.00 0.00 3.18
2959 3448 3.691575 TCCCTATCAAATCGCAAAACCA 58.308 40.909 0.00 0.00 0.00 3.67
2960 3449 4.440112 CCTTCCCTATCAAATCGCAAAACC 60.440 45.833 0.00 0.00 0.00 3.27
2966 3455 1.239347 GGCCTTCCCTATCAAATCGC 58.761 55.000 0.00 0.00 0.00 4.58
2967 3456 1.512926 CGGCCTTCCCTATCAAATCG 58.487 55.000 0.00 0.00 0.00 3.34
2968 3457 1.420138 TCCGGCCTTCCCTATCAAATC 59.580 52.381 0.00 0.00 0.00 2.17
2984 3473 8.258708 CCTATCTATCTTTAATTACCCTTCCGG 58.741 40.741 0.00 0.00 37.81 5.14
2986 3475 9.113797 ACCCTATCTATCTTTAATTACCCTTCC 57.886 37.037 0.00 0.00 0.00 3.46
2987 3476 9.945904 CACCCTATCTATCTTTAATTACCCTTC 57.054 37.037 0.00 0.00 0.00 3.46
2988 3477 9.684702 TCACCCTATCTATCTTTAATTACCCTT 57.315 33.333 0.00 0.00 0.00 3.95
2989 3478 9.684702 TTCACCCTATCTATCTTTAATTACCCT 57.315 33.333 0.00 0.00 0.00 4.34
2990 3479 9.945904 CTTCACCCTATCTATCTTTAATTACCC 57.054 37.037 0.00 0.00 0.00 3.69
2995 3484 9.608718 AGCTACTTCACCCTATCTATCTTTAAT 57.391 33.333 0.00 0.00 0.00 1.40
2996 3485 8.861086 CAGCTACTTCACCCTATCTATCTTTAA 58.139 37.037 0.00 0.00 0.00 1.52
2997 3486 8.225416 TCAGCTACTTCACCCTATCTATCTTTA 58.775 37.037 0.00 0.00 0.00 1.85
2998 3487 7.069986 TCAGCTACTTCACCCTATCTATCTTT 58.930 38.462 0.00 0.00 0.00 2.52
2999 3488 6.615617 TCAGCTACTTCACCCTATCTATCTT 58.384 40.000 0.00 0.00 0.00 2.40
3000 3489 6.207509 TCAGCTACTTCACCCTATCTATCT 57.792 41.667 0.00 0.00 0.00 1.98
3001 3490 6.661377 TGATCAGCTACTTCACCCTATCTATC 59.339 42.308 0.00 0.00 0.00 2.08
3002 3491 6.556639 TGATCAGCTACTTCACCCTATCTAT 58.443 40.000 0.00 0.00 0.00 1.98
3289 3788 7.001099 TCAGTACGGTTCCTCTTAAGAAATT 57.999 36.000 6.63 0.00 0.00 1.82
3290 3795 6.600882 TCAGTACGGTTCCTCTTAAGAAAT 57.399 37.500 6.63 0.00 0.00 2.17
3317 3822 7.229907 TGGACTGGGTTTAAACTTCTGATTAAC 59.770 37.037 17.50 0.00 0.00 2.01
3444 3951 3.801594 GCTTTGAAAAATTGTTGAGCCGA 59.198 39.130 0.00 0.00 0.00 5.54
3533 4045 3.696051 CAGATGACCCAGGTGTAATTTGG 59.304 47.826 0.00 0.00 0.00 3.28
3543 4055 4.502016 CGATCAATATCAGATGACCCAGG 58.498 47.826 0.00 0.00 31.93 4.45
3544 4056 4.502016 CCGATCAATATCAGATGACCCAG 58.498 47.826 0.00 0.00 31.93 4.45
3575 4087 6.106648 TGAATGAGAGAGCTCTTTGAGAAA 57.893 37.500 19.36 0.00 40.61 2.52
3892 4406 0.961019 TCCATTGCAACCTTGTCAGC 59.039 50.000 0.00 0.00 0.00 4.26
3913 4427 2.281484 GGGAGCACGGAAGCAACA 60.281 61.111 0.00 0.00 36.85 3.33
3981 4495 2.499205 CTATGGCGCGTCAGGGAA 59.501 61.111 21.72 3.43 0.00 3.97
3982 4496 4.221422 GCTATGGCGCGTCAGGGA 62.221 66.667 21.72 6.02 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.