Multiple sequence alignment - TraesCS5B01G266800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G266800 chr5B 100.000 4736 0 0 1 4736 451183899 451188634 0.000000e+00 8746.0
1 TraesCS5B01G266800 chr5B 82.609 345 50 9 2444 2784 436283635 436283297 3.580000e-76 296.0
2 TraesCS5B01G266800 chr5D 94.641 2519 86 16 344 2829 378026893 378029395 0.000000e+00 3858.0
3 TraesCS5B01G266800 chr5D 95.956 1360 47 5 3100 4453 378038321 378039678 0.000000e+00 2200.0
4 TraesCS5B01G266800 chr5D 96.528 288 10 0 4449 4736 378039858 378040145 1.190000e-130 477.0
5 TraesCS5B01G266800 chr5D 89.011 364 25 4 1 350 378013642 378014004 2.020000e-118 436.0
6 TraesCS5B01G266800 chr5D 97.131 244 6 1 2862 3104 378029397 378029640 1.230000e-110 411.0
7 TraesCS5B01G266800 chr5D 79.942 344 61 8 2444 2784 368366393 368366055 3.660000e-61 246.0
8 TraesCS5B01G266800 chr5A 92.873 2245 120 19 880 3106 478835153 478837375 0.000000e+00 3223.0
9 TraesCS5B01G266800 chr5A 93.818 647 34 3 3175 3815 478837374 478838020 0.000000e+00 968.0
10 TraesCS5B01G266800 chr5A 91.667 660 45 4 3815 4472 478838055 478838706 0.000000e+00 905.0
11 TraesCS5B01G266800 chr5A 81.268 347 52 11 2444 2783 470243293 470242953 7.810000e-68 268.0
12 TraesCS5B01G266800 chr5A 90.256 195 11 4 4432 4626 478838709 478838895 1.020000e-61 248.0
13 TraesCS5B01G266800 chr5A 85.981 214 24 4 434 647 478821146 478821353 1.720000e-54 224.0
14 TraesCS5B01G266800 chr5A 92.537 67 5 0 816 882 478834849 478834915 3.900000e-16 97.1
15 TraesCS5B01G266800 chr1D 76.081 393 83 9 3351 3736 798071 797683 1.340000e-45 195.0
16 TraesCS5B01G266800 chr1D 74.825 429 86 16 3351 3768 625533 625116 1.750000e-39 174.0
17 TraesCS5B01G266800 chr1D 74.430 395 86 13 3351 3736 894241 893853 6.350000e-34 156.0
18 TraesCS5B01G266800 chr1D 73.356 289 62 10 3467 3750 725898 725620 5.050000e-15 93.5
19 TraesCS5B01G266800 chr1B 75.888 394 80 13 3352 3736 3574422 3574035 2.250000e-43 187.0
20 TraesCS5B01G266800 chr1B 74.877 406 87 10 3351 3751 4207902 4208297 2.270000e-38 171.0
21 TraesCS5B01G266800 chr1A 74.619 394 87 11 3351 3736 2850563 2850951 1.360000e-35 161.0
22 TraesCS5B01G266800 chr1A 100.000 28 0 0 69 96 442477997 442478024 9.000000e-03 52.8
23 TraesCS5B01G266800 chr7A 89.610 77 5 2 340 416 427577025 427576952 1.400000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G266800 chr5B 451183899 451188634 4735 False 8746.00 8746 100.0000 1 4736 1 chr5B.!!$F1 4735
1 TraesCS5B01G266800 chr5D 378026893 378029640 2747 False 2134.50 3858 95.8860 344 3104 2 chr5D.!!$F2 2760
2 TraesCS5B01G266800 chr5D 378038321 378040145 1824 False 1338.50 2200 96.2420 3100 4736 2 chr5D.!!$F3 1636
3 TraesCS5B01G266800 chr5A 478834849 478838895 4046 False 1088.22 3223 92.2302 816 4626 5 chr5A.!!$F2 3810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.038744 CCAGGGCCAAGATCTTGTGT 59.961 55.0 29.03 11.4 38.85 3.72 F
366 367 0.250338 GTGAGGGGGAGTGTGTTGAC 60.250 60.0 0.00 0.0 0.00 3.18 F
1662 1936 0.242825 TCTCGACACCTGGTTTAGCG 59.757 55.0 0.00 0.0 0.00 4.26 F
2970 3252 0.678048 CTGGGCAAGCAGTTACTCCC 60.678 60.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 1715 0.634465 AAGGAGAGAGAGGGAGGGAC 59.366 60.000 0.00 0.0 0.00 4.46 R
2184 2465 1.078143 GGTCAGATGGTGTGGCTCC 60.078 63.158 0.00 0.0 0.00 4.70 R
3444 3733 1.470285 GCTTCTATACGCGGTGTTCCA 60.470 52.381 12.47 0.0 0.00 3.53 R
4446 4818 1.270094 CGGGTGTCAAGCTAGTTGTGA 60.270 52.381 0.00 0.0 37.43 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.228059 CATCATCTGATGGAGTTGCCC 58.772 52.381 17.06 0.00 46.09 5.36
29 30 0.548031 TCATCTGATGGAGTTGCCCC 59.452 55.000 17.06 0.00 34.97 5.80
30 31 0.549950 CATCTGATGGAGTTGCCCCT 59.450 55.000 9.82 0.00 34.97 4.79
31 32 1.064166 CATCTGATGGAGTTGCCCCTT 60.064 52.381 9.82 0.00 34.97 3.95
32 33 1.075601 TCTGATGGAGTTGCCCCTTT 58.924 50.000 0.00 0.00 34.97 3.11
33 34 1.004745 TCTGATGGAGTTGCCCCTTTC 59.995 52.381 0.00 0.00 34.97 2.62
34 35 1.005215 CTGATGGAGTTGCCCCTTTCT 59.995 52.381 0.00 0.00 34.97 2.52
35 36 1.428912 TGATGGAGTTGCCCCTTTCTT 59.571 47.619 0.00 0.00 34.97 2.52
36 37 1.821136 GATGGAGTTGCCCCTTTCTTG 59.179 52.381 0.00 0.00 34.97 3.02
37 38 0.178964 TGGAGTTGCCCCTTTCTTGG 60.179 55.000 0.00 0.00 34.97 3.61
38 39 0.112412 GGAGTTGCCCCTTTCTTGGA 59.888 55.000 0.00 0.00 0.00 3.53
39 40 1.539157 GAGTTGCCCCTTTCTTGGAG 58.461 55.000 0.00 0.00 0.00 3.86
40 41 1.073923 GAGTTGCCCCTTTCTTGGAGA 59.926 52.381 0.00 0.00 0.00 3.71
41 42 1.713078 AGTTGCCCCTTTCTTGGAGAT 59.287 47.619 0.00 0.00 0.00 2.75
42 43 1.821136 GTTGCCCCTTTCTTGGAGATG 59.179 52.381 0.00 0.00 0.00 2.90
43 44 0.323725 TGCCCCTTTCTTGGAGATGC 60.324 55.000 0.00 0.00 0.00 3.91
44 45 0.323725 GCCCCTTTCTTGGAGATGCA 60.324 55.000 0.00 0.00 0.00 3.96
45 46 1.892329 GCCCCTTTCTTGGAGATGCAA 60.892 52.381 0.00 0.00 0.00 4.08
46 47 2.528564 CCCCTTTCTTGGAGATGCAAA 58.471 47.619 0.00 0.00 0.00 3.68
47 48 2.899256 CCCCTTTCTTGGAGATGCAAAA 59.101 45.455 0.00 0.00 0.00 2.44
48 49 3.324556 CCCCTTTCTTGGAGATGCAAAAA 59.675 43.478 0.00 0.00 0.00 1.94
49 50 4.019950 CCCCTTTCTTGGAGATGCAAAAAT 60.020 41.667 0.00 0.00 0.00 1.82
50 51 5.173664 CCCTTTCTTGGAGATGCAAAAATC 58.826 41.667 0.00 0.00 0.00 2.17
51 52 5.279607 CCCTTTCTTGGAGATGCAAAAATCA 60.280 40.000 0.00 0.00 0.00 2.57
52 53 6.403878 CCTTTCTTGGAGATGCAAAAATCAT 58.596 36.000 0.00 0.00 0.00 2.45
53 54 6.877322 CCTTTCTTGGAGATGCAAAAATCATT 59.123 34.615 0.00 0.00 0.00 2.57
54 55 7.389607 CCTTTCTTGGAGATGCAAAAATCATTT 59.610 33.333 0.00 0.00 0.00 2.32
55 56 8.680039 TTTCTTGGAGATGCAAAAATCATTTT 57.320 26.923 0.00 0.00 39.30 1.82
56 57 8.680039 TTCTTGGAGATGCAAAAATCATTTTT 57.320 26.923 1.98 1.98 43.20 1.94
100 101 9.725019 TCTTCTATTGAAAATGCTCTTAACAGA 57.275 29.630 0.00 0.00 0.00 3.41
101 102 9.766277 CTTCTATTGAAAATGCTCTTAACAGAC 57.234 33.333 0.00 0.00 0.00 3.51
102 103 9.507329 TTCTATTGAAAATGCTCTTAACAGACT 57.493 29.630 0.00 0.00 0.00 3.24
103 104 8.939929 TCTATTGAAAATGCTCTTAACAGACTG 58.060 33.333 0.00 0.00 0.00 3.51
104 105 6.942532 TTGAAAATGCTCTTAACAGACTGT 57.057 33.333 1.07 1.07 0.00 3.55
105 106 6.942532 TGAAAATGCTCTTAACAGACTGTT 57.057 33.333 23.61 23.61 43.88 3.16
106 107 6.959361 TGAAAATGCTCTTAACAGACTGTTC 58.041 36.000 23.79 10.20 40.22 3.18
107 108 5.597813 AAATGCTCTTAACAGACTGTTCG 57.402 39.130 23.79 15.86 40.22 3.95
108 109 3.728076 TGCTCTTAACAGACTGTTCGT 57.272 42.857 23.79 3.73 40.22 3.85
109 110 4.841443 TGCTCTTAACAGACTGTTCGTA 57.159 40.909 23.79 10.19 40.22 3.43
110 111 5.386958 TGCTCTTAACAGACTGTTCGTAT 57.613 39.130 23.79 2.95 40.22 3.06
111 112 5.399858 TGCTCTTAACAGACTGTTCGTATC 58.600 41.667 23.79 12.16 40.22 2.24
112 113 4.496183 GCTCTTAACAGACTGTTCGTATCG 59.504 45.833 23.79 10.17 40.22 2.92
113 114 5.618056 TCTTAACAGACTGTTCGTATCGT 57.382 39.130 23.79 0.65 40.22 3.73
114 115 5.388111 TCTTAACAGACTGTTCGTATCGTG 58.612 41.667 23.79 7.15 40.22 4.35
115 116 2.631418 ACAGACTGTTCGTATCGTGG 57.369 50.000 1.07 0.00 0.00 4.94
116 117 1.269166 CAGACTGTTCGTATCGTGGC 58.731 55.000 0.00 0.00 0.00 5.01
117 118 0.172803 AGACTGTTCGTATCGTGGCC 59.827 55.000 0.00 0.00 0.00 5.36
118 119 1.138047 GACTGTTCGTATCGTGGCCG 61.138 60.000 0.00 0.00 0.00 6.13
119 120 1.876714 CTGTTCGTATCGTGGCCGG 60.877 63.158 0.00 0.00 33.95 6.13
120 121 2.274232 CTGTTCGTATCGTGGCCGGA 62.274 60.000 5.05 0.00 33.95 5.14
121 122 1.875364 GTTCGTATCGTGGCCGGAC 60.875 63.158 5.05 0.56 33.95 4.79
122 123 2.048023 TTCGTATCGTGGCCGGACT 61.048 57.895 9.82 0.00 33.95 3.85
123 124 1.597797 TTCGTATCGTGGCCGGACTT 61.598 55.000 9.82 0.00 33.95 3.01
124 125 1.153706 CGTATCGTGGCCGGACTTT 60.154 57.895 9.82 0.00 33.95 2.66
125 126 1.418342 CGTATCGTGGCCGGACTTTG 61.418 60.000 9.82 0.00 33.95 2.77
126 127 0.390735 GTATCGTGGCCGGACTTTGT 60.391 55.000 9.82 0.00 33.95 2.83
127 128 0.322322 TATCGTGGCCGGACTTTGTT 59.678 50.000 9.82 0.00 33.95 2.83
128 129 0.536460 ATCGTGGCCGGACTTTGTTT 60.536 50.000 9.82 0.00 33.95 2.83
129 130 1.008995 CGTGGCCGGACTTTGTTTG 60.009 57.895 9.82 0.00 0.00 2.93
130 131 1.299850 GTGGCCGGACTTTGTTTGC 60.300 57.895 9.82 0.00 0.00 3.68
131 132 1.454847 TGGCCGGACTTTGTTTGCT 60.455 52.632 9.82 0.00 0.00 3.91
132 133 1.285950 GGCCGGACTTTGTTTGCTC 59.714 57.895 5.05 0.00 0.00 4.26
133 134 1.452145 GGCCGGACTTTGTTTGCTCA 61.452 55.000 5.05 0.00 0.00 4.26
134 135 0.040067 GCCGGACTTTGTTTGCTCAG 60.040 55.000 5.05 0.00 0.00 3.35
135 136 0.040067 CCGGACTTTGTTTGCTCAGC 60.040 55.000 0.00 0.00 0.00 4.26
136 137 0.384725 CGGACTTTGTTTGCTCAGCG 60.385 55.000 0.00 0.00 0.00 5.18
137 138 0.040067 GGACTTTGTTTGCTCAGCGG 60.040 55.000 0.00 0.00 0.00 5.52
138 139 0.944386 GACTTTGTTTGCTCAGCGGA 59.056 50.000 0.00 0.00 0.00 5.54
139 140 0.663153 ACTTTGTTTGCTCAGCGGAC 59.337 50.000 0.00 0.00 0.00 4.79
140 141 0.662619 CTTTGTTTGCTCAGCGGACA 59.337 50.000 1.01 1.01 0.00 4.02
141 142 1.267806 CTTTGTTTGCTCAGCGGACAT 59.732 47.619 5.81 0.00 0.00 3.06
142 143 2.177394 TTGTTTGCTCAGCGGACATA 57.823 45.000 5.81 0.00 0.00 2.29
143 144 1.725641 TGTTTGCTCAGCGGACATAG 58.274 50.000 1.01 0.00 0.00 2.23
144 145 0.375106 GTTTGCTCAGCGGACATAGC 59.625 55.000 0.00 0.00 35.51 2.97
145 146 1.083806 TTTGCTCAGCGGACATAGCG 61.084 55.000 0.00 0.00 37.80 4.26
146 147 3.333969 GCTCAGCGGACATAGCGC 61.334 66.667 0.00 0.00 40.04 5.92
147 148 2.104928 CTCAGCGGACATAGCGCA 59.895 61.111 11.47 0.00 40.04 6.09
148 149 1.948138 CTCAGCGGACATAGCGCAG 60.948 63.158 11.47 0.64 40.04 5.18
149 150 2.963854 CAGCGGACATAGCGCAGG 60.964 66.667 11.47 0.00 40.04 4.85
150 151 4.899239 AGCGGACATAGCGCAGGC 62.899 66.667 11.47 0.00 40.04 4.85
152 153 4.873129 CGGACATAGCGCAGGCGT 62.873 66.667 11.47 0.00 46.35 5.68
153 154 3.264897 GGACATAGCGCAGGCGTG 61.265 66.667 11.47 8.27 46.35 5.34
154 155 2.202743 GACATAGCGCAGGCGTGA 60.203 61.111 11.47 3.87 46.35 4.35
155 156 2.202797 ACATAGCGCAGGCGTGAG 60.203 61.111 11.47 8.37 46.35 3.51
181 182 4.431131 CGGTGCCAGGGCCAAGAT 62.431 66.667 6.18 0.00 41.09 2.40
182 183 2.440980 GGTGCCAGGGCCAAGATC 60.441 66.667 6.18 0.00 41.09 2.75
183 184 2.679716 GTGCCAGGGCCAAGATCT 59.320 61.111 6.18 0.00 41.09 2.75
184 185 1.000396 GTGCCAGGGCCAAGATCTT 60.000 57.895 6.18 0.88 41.09 2.40
185 186 1.000521 TGCCAGGGCCAAGATCTTG 60.001 57.895 25.75 25.75 41.09 3.02
186 187 1.000396 GCCAGGGCCAAGATCTTGT 60.000 57.895 29.03 11.89 38.85 3.16
187 188 1.318158 GCCAGGGCCAAGATCTTGTG 61.318 60.000 29.03 21.18 38.85 3.33
188 189 0.038744 CCAGGGCCAAGATCTTGTGT 59.961 55.000 29.03 11.40 38.85 3.72
189 190 1.457346 CAGGGCCAAGATCTTGTGTC 58.543 55.000 29.03 22.05 38.85 3.67
190 191 0.329596 AGGGCCAAGATCTTGTGTCC 59.670 55.000 29.03 27.97 38.85 4.02
191 192 0.329596 GGGCCAAGATCTTGTGTCCT 59.670 55.000 29.03 0.00 38.85 3.85
192 193 1.272147 GGGCCAAGATCTTGTGTCCTT 60.272 52.381 29.03 0.00 38.85 3.36
193 194 2.026262 GGGCCAAGATCTTGTGTCCTTA 60.026 50.000 29.03 0.00 38.85 2.69
194 195 3.010420 GGCCAAGATCTTGTGTCCTTAC 58.990 50.000 29.03 11.02 38.85 2.34
195 196 3.307762 GGCCAAGATCTTGTGTCCTTACT 60.308 47.826 29.03 0.00 38.85 2.24
196 197 4.081087 GGCCAAGATCTTGTGTCCTTACTA 60.081 45.833 29.03 0.00 38.85 1.82
197 198 5.112686 GCCAAGATCTTGTGTCCTTACTAG 58.887 45.833 29.03 13.34 38.85 2.57
198 199 5.665459 CCAAGATCTTGTGTCCTTACTAGG 58.335 45.833 29.03 9.49 39.67 3.02
199 200 5.112686 CAAGATCTTGTGTCCTTACTAGGC 58.887 45.833 24.65 0.00 37.34 3.93
200 201 3.707102 AGATCTTGTGTCCTTACTAGGCC 59.293 47.826 0.00 0.00 41.69 5.19
201 202 3.185880 TCTTGTGTCCTTACTAGGCCT 57.814 47.619 11.78 11.78 41.69 5.19
202 203 4.326600 TCTTGTGTCCTTACTAGGCCTA 57.673 45.455 13.09 13.09 41.69 3.93
203 204 4.279145 TCTTGTGTCCTTACTAGGCCTAG 58.721 47.826 33.98 33.98 41.69 3.02
204 205 4.017775 TCTTGTGTCCTTACTAGGCCTAGA 60.018 45.833 40.40 23.55 41.69 2.43
205 206 4.537945 TGTGTCCTTACTAGGCCTAGAT 57.462 45.455 40.40 27.13 41.69 1.98
206 207 4.471548 TGTGTCCTTACTAGGCCTAGATC 58.528 47.826 40.40 23.15 41.69 2.75
207 208 4.079385 TGTGTCCTTACTAGGCCTAGATCA 60.079 45.833 40.40 24.95 41.69 2.92
208 209 4.521256 GTGTCCTTACTAGGCCTAGATCAG 59.479 50.000 40.40 29.43 41.69 2.90
209 210 4.415846 TGTCCTTACTAGGCCTAGATCAGA 59.584 45.833 40.40 27.55 41.69 3.27
210 211 5.075205 TGTCCTTACTAGGCCTAGATCAGAT 59.925 44.000 40.40 22.39 41.69 2.90
211 212 6.014012 GTCCTTACTAGGCCTAGATCAGATT 58.986 44.000 40.40 21.71 41.69 2.40
212 213 6.152154 GTCCTTACTAGGCCTAGATCAGATTC 59.848 46.154 40.40 20.64 41.69 2.52
213 214 5.420739 CCTTACTAGGCCTAGATCAGATTCC 59.579 48.000 40.40 0.00 36.97 3.01
214 215 3.785364 ACTAGGCCTAGATCAGATTCCC 58.215 50.000 40.40 0.00 36.97 3.97
215 216 2.037385 AGGCCTAGATCAGATTCCCC 57.963 55.000 1.29 0.00 0.00 4.81
216 217 1.511747 AGGCCTAGATCAGATTCCCCT 59.488 52.381 1.29 0.00 0.00 4.79
217 218 2.730254 AGGCCTAGATCAGATTCCCCTA 59.270 50.000 1.29 0.00 0.00 3.53
218 219 3.144894 AGGCCTAGATCAGATTCCCCTAA 59.855 47.826 1.29 0.00 0.00 2.69
219 220 3.910627 GGCCTAGATCAGATTCCCCTAAA 59.089 47.826 0.00 0.00 0.00 1.85
220 221 4.538089 GGCCTAGATCAGATTCCCCTAAAT 59.462 45.833 0.00 0.00 0.00 1.40
221 222 5.726793 GGCCTAGATCAGATTCCCCTAAATA 59.273 44.000 0.00 0.00 0.00 1.40
222 223 6.215636 GGCCTAGATCAGATTCCCCTAAATAA 59.784 42.308 0.00 0.00 0.00 1.40
223 224 7.257053 GGCCTAGATCAGATTCCCCTAAATAAA 60.257 40.741 0.00 0.00 0.00 1.40
224 225 8.164070 GCCTAGATCAGATTCCCCTAAATAAAA 58.836 37.037 0.00 0.00 0.00 1.52
225 226 9.508642 CCTAGATCAGATTCCCCTAAATAAAAC 57.491 37.037 0.00 0.00 0.00 2.43
229 230 9.508642 GATCAGATTCCCCTAAATAAAACTAGG 57.491 37.037 0.00 0.00 35.39 3.02
230 231 7.287810 TCAGATTCCCCTAAATAAAACTAGGC 58.712 38.462 0.00 0.00 34.44 3.93
231 232 6.204882 CAGATTCCCCTAAATAAAACTAGGCG 59.795 42.308 0.00 0.00 34.44 5.52
232 233 5.440207 TTCCCCTAAATAAAACTAGGCGT 57.560 39.130 0.00 0.00 34.44 5.68
233 234 4.773013 TCCCCTAAATAAAACTAGGCGTG 58.227 43.478 0.00 0.00 34.44 5.34
234 235 3.881089 CCCCTAAATAAAACTAGGCGTGG 59.119 47.826 0.00 0.00 34.44 4.94
235 236 4.384427 CCCCTAAATAAAACTAGGCGTGGA 60.384 45.833 0.00 0.00 34.44 4.02
236 237 5.374071 CCCTAAATAAAACTAGGCGTGGAT 58.626 41.667 0.00 0.00 34.44 3.41
237 238 5.238650 CCCTAAATAAAACTAGGCGTGGATG 59.761 44.000 0.00 0.00 34.44 3.51
238 239 6.053005 CCTAAATAAAACTAGGCGTGGATGA 58.947 40.000 0.00 0.00 0.00 2.92
239 240 6.202954 CCTAAATAAAACTAGGCGTGGATGAG 59.797 42.308 0.00 0.00 0.00 2.90
240 241 5.353394 AATAAAACTAGGCGTGGATGAGA 57.647 39.130 0.00 0.00 0.00 3.27
241 242 3.695830 AAAACTAGGCGTGGATGAGAA 57.304 42.857 0.00 0.00 0.00 2.87
242 243 3.914426 AAACTAGGCGTGGATGAGAAT 57.086 42.857 0.00 0.00 0.00 2.40
243 244 3.914426 AACTAGGCGTGGATGAGAATT 57.086 42.857 0.00 0.00 0.00 2.17
244 245 3.185246 ACTAGGCGTGGATGAGAATTG 57.815 47.619 0.00 0.00 0.00 2.32
245 246 2.501723 ACTAGGCGTGGATGAGAATTGT 59.498 45.455 0.00 0.00 0.00 2.71
246 247 2.496899 AGGCGTGGATGAGAATTGTT 57.503 45.000 0.00 0.00 0.00 2.83
247 248 2.086869 AGGCGTGGATGAGAATTGTTG 58.913 47.619 0.00 0.00 0.00 3.33
248 249 2.083774 GGCGTGGATGAGAATTGTTGA 58.916 47.619 0.00 0.00 0.00 3.18
249 250 2.159517 GGCGTGGATGAGAATTGTTGAC 60.160 50.000 0.00 0.00 0.00 3.18
250 251 2.474526 GCGTGGATGAGAATTGTTGACG 60.475 50.000 0.00 0.00 0.00 4.35
251 252 2.736721 CGTGGATGAGAATTGTTGACGT 59.263 45.455 0.00 0.00 0.00 4.34
252 253 3.924073 CGTGGATGAGAATTGTTGACGTA 59.076 43.478 0.00 0.00 0.00 3.57
253 254 4.566759 CGTGGATGAGAATTGTTGACGTAT 59.433 41.667 0.00 0.00 0.00 3.06
254 255 5.746721 CGTGGATGAGAATTGTTGACGTATA 59.253 40.000 0.00 0.00 0.00 1.47
255 256 6.254804 CGTGGATGAGAATTGTTGACGTATAA 59.745 38.462 0.00 0.00 0.00 0.98
256 257 7.201487 CGTGGATGAGAATTGTTGACGTATAAA 60.201 37.037 0.00 0.00 0.00 1.40
257 258 8.612619 GTGGATGAGAATTGTTGACGTATAAAT 58.387 33.333 0.00 0.00 0.00 1.40
258 259 8.611757 TGGATGAGAATTGTTGACGTATAAATG 58.388 33.333 0.00 0.00 0.00 2.32
259 260 8.826710 GGATGAGAATTGTTGACGTATAAATGA 58.173 33.333 0.00 0.00 0.00 2.57
267 268 8.563123 TTGTTGACGTATAAATGAATAACCCA 57.437 30.769 0.00 0.00 0.00 4.51
268 269 7.976826 TGTTGACGTATAAATGAATAACCCAC 58.023 34.615 0.00 0.00 0.00 4.61
269 270 7.066043 TGTTGACGTATAAATGAATAACCCACC 59.934 37.037 0.00 0.00 0.00 4.61
270 271 6.891388 TGACGTATAAATGAATAACCCACCT 58.109 36.000 0.00 0.00 0.00 4.00
271 272 7.340256 TGACGTATAAATGAATAACCCACCTT 58.660 34.615 0.00 0.00 0.00 3.50
272 273 7.830201 TGACGTATAAATGAATAACCCACCTTT 59.170 33.333 0.00 0.00 0.00 3.11
273 274 8.217131 ACGTATAAATGAATAACCCACCTTTC 57.783 34.615 0.00 0.00 0.00 2.62
274 275 8.050930 ACGTATAAATGAATAACCCACCTTTCT 58.949 33.333 0.00 0.00 0.00 2.52
275 276 9.550406 CGTATAAATGAATAACCCACCTTTCTA 57.450 33.333 0.00 0.00 0.00 2.10
278 279 9.936329 ATAAATGAATAACCCACCTTTCTACAT 57.064 29.630 0.00 0.00 0.00 2.29
279 280 7.881775 AATGAATAACCCACCTTTCTACATC 57.118 36.000 0.00 0.00 0.00 3.06
280 281 6.381498 TGAATAACCCACCTTTCTACATCA 57.619 37.500 0.00 0.00 0.00 3.07
281 282 6.414732 TGAATAACCCACCTTTCTACATCAG 58.585 40.000 0.00 0.00 0.00 2.90
282 283 2.789409 ACCCACCTTTCTACATCAGC 57.211 50.000 0.00 0.00 0.00 4.26
283 284 2.269940 ACCCACCTTTCTACATCAGCT 58.730 47.619 0.00 0.00 0.00 4.24
284 285 2.644798 ACCCACCTTTCTACATCAGCTT 59.355 45.455 0.00 0.00 0.00 3.74
285 286 3.012518 CCCACCTTTCTACATCAGCTTG 58.987 50.000 0.00 0.00 0.00 4.01
286 287 3.307691 CCCACCTTTCTACATCAGCTTGA 60.308 47.826 0.00 0.00 0.00 3.02
287 288 4.326826 CCACCTTTCTACATCAGCTTGAA 58.673 43.478 0.00 0.00 0.00 2.69
288 289 4.946157 CCACCTTTCTACATCAGCTTGAAT 59.054 41.667 0.00 0.00 0.00 2.57
289 290 5.416952 CCACCTTTCTACATCAGCTTGAATT 59.583 40.000 0.00 0.00 0.00 2.17
290 291 6.071728 CCACCTTTCTACATCAGCTTGAATTT 60.072 38.462 0.00 0.00 0.00 1.82
291 292 7.373493 CACCTTTCTACATCAGCTTGAATTTT 58.627 34.615 0.00 0.00 0.00 1.82
292 293 7.869429 CACCTTTCTACATCAGCTTGAATTTTT 59.131 33.333 0.00 0.00 0.00 1.94
293 294 7.869429 ACCTTTCTACATCAGCTTGAATTTTTG 59.131 33.333 0.00 0.00 0.00 2.44
294 295 7.330208 CCTTTCTACATCAGCTTGAATTTTTGG 59.670 37.037 0.00 0.00 0.00 3.28
295 296 6.271488 TCTACATCAGCTTGAATTTTTGGG 57.729 37.500 0.00 0.00 0.00 4.12
296 297 4.961438 ACATCAGCTTGAATTTTTGGGT 57.039 36.364 0.00 0.00 0.00 4.51
297 298 4.634199 ACATCAGCTTGAATTTTTGGGTG 58.366 39.130 0.00 0.00 0.00 4.61
298 299 4.344679 ACATCAGCTTGAATTTTTGGGTGA 59.655 37.500 0.00 0.00 38.46 4.02
299 300 5.163322 ACATCAGCTTGAATTTTTGGGTGAA 60.163 36.000 0.00 0.00 37.81 3.18
300 301 4.692228 TCAGCTTGAATTTTTGGGTGAAC 58.308 39.130 0.00 0.00 32.67 3.18
301 302 4.405358 TCAGCTTGAATTTTTGGGTGAACT 59.595 37.500 0.00 0.00 32.67 3.01
302 303 4.508861 CAGCTTGAATTTTTGGGTGAACTG 59.491 41.667 0.00 0.00 0.00 3.16
303 304 4.405358 AGCTTGAATTTTTGGGTGAACTGA 59.595 37.500 0.00 0.00 0.00 3.41
304 305 5.070847 AGCTTGAATTTTTGGGTGAACTGAT 59.929 36.000 0.00 0.00 0.00 2.90
305 306 5.759763 GCTTGAATTTTTGGGTGAACTGATT 59.240 36.000 0.00 0.00 0.00 2.57
306 307 6.293027 GCTTGAATTTTTGGGTGAACTGATTG 60.293 38.462 0.00 0.00 0.00 2.67
307 308 6.477053 TGAATTTTTGGGTGAACTGATTGA 57.523 33.333 0.00 0.00 0.00 2.57
308 309 7.065120 TGAATTTTTGGGTGAACTGATTGAT 57.935 32.000 0.00 0.00 0.00 2.57
309 310 6.930164 TGAATTTTTGGGTGAACTGATTGATG 59.070 34.615 0.00 0.00 0.00 3.07
310 311 3.940209 TTTGGGTGAACTGATTGATGC 57.060 42.857 0.00 0.00 0.00 3.91
311 312 1.452110 TGGGTGAACTGATTGATGCG 58.548 50.000 0.00 0.00 0.00 4.73
312 313 1.271325 TGGGTGAACTGATTGATGCGT 60.271 47.619 0.00 0.00 0.00 5.24
313 314 1.131126 GGGTGAACTGATTGATGCGTG 59.869 52.381 0.00 0.00 0.00 5.34
314 315 1.466360 GGTGAACTGATTGATGCGTGC 60.466 52.381 0.00 0.00 0.00 5.34
315 316 1.197492 GTGAACTGATTGATGCGTGCA 59.803 47.619 0.00 0.00 0.00 4.57
316 317 1.465777 TGAACTGATTGATGCGTGCAG 59.534 47.619 0.00 0.00 0.00 4.41
317 318 1.466167 GAACTGATTGATGCGTGCAGT 59.534 47.619 0.00 0.00 41.19 4.40
318 319 1.527034 ACTGATTGATGCGTGCAGTT 58.473 45.000 0.00 0.00 36.49 3.16
319 320 1.881973 ACTGATTGATGCGTGCAGTTT 59.118 42.857 0.00 0.00 36.49 2.66
320 321 3.073678 ACTGATTGATGCGTGCAGTTTA 58.926 40.909 0.00 0.00 36.49 2.01
321 322 3.120199 ACTGATTGATGCGTGCAGTTTAC 60.120 43.478 0.00 0.00 36.49 2.01
322 323 2.810852 TGATTGATGCGTGCAGTTTACA 59.189 40.909 0.00 0.00 0.00 2.41
323 324 3.439825 TGATTGATGCGTGCAGTTTACAT 59.560 39.130 0.00 0.00 0.00 2.29
324 325 3.913548 TTGATGCGTGCAGTTTACATT 57.086 38.095 0.00 0.00 0.00 2.71
325 326 3.200294 TGATGCGTGCAGTTTACATTG 57.800 42.857 0.00 0.00 0.00 2.82
326 327 2.551887 TGATGCGTGCAGTTTACATTGT 59.448 40.909 0.00 0.00 0.00 2.71
327 328 3.748568 TGATGCGTGCAGTTTACATTGTA 59.251 39.130 0.00 0.00 0.00 2.41
328 329 4.394610 TGATGCGTGCAGTTTACATTGTAT 59.605 37.500 0.00 0.00 0.00 2.29
329 330 4.335082 TGCGTGCAGTTTACATTGTATC 57.665 40.909 0.00 0.00 0.00 2.24
330 331 3.181525 TGCGTGCAGTTTACATTGTATCG 60.182 43.478 0.00 0.00 0.00 2.92
331 332 3.784199 GCGTGCAGTTTACATTGTATCGG 60.784 47.826 0.00 0.00 0.00 4.18
332 333 3.615056 CGTGCAGTTTACATTGTATCGGA 59.385 43.478 0.00 0.00 0.00 4.55
333 334 4.092237 CGTGCAGTTTACATTGTATCGGAA 59.908 41.667 0.00 0.00 0.00 4.30
334 335 5.321516 GTGCAGTTTACATTGTATCGGAAC 58.678 41.667 0.00 0.00 0.00 3.62
335 336 4.393680 TGCAGTTTACATTGTATCGGAACC 59.606 41.667 0.00 0.00 0.00 3.62
336 337 4.493545 GCAGTTTACATTGTATCGGAACCG 60.494 45.833 6.94 6.94 41.35 4.44
346 347 1.982395 TCGGAACCGAGAGCCACAT 60.982 57.895 12.04 0.00 44.01 3.21
366 367 0.250338 GTGAGGGGGAGTGTGTTGAC 60.250 60.000 0.00 0.00 0.00 3.18
375 376 4.331717 GGGGAGTGTGTTGACGTATAAATG 59.668 45.833 0.00 0.00 0.00 2.32
389 390 7.384932 TGACGTATAAATGCATAGTCCATCTTG 59.615 37.037 0.00 0.00 0.00 3.02
553 562 8.487176 CAAAATTTTGAAACAAACTATCCTCGG 58.513 33.333 23.72 0.00 40.55 4.63
576 585 9.944663 TCGGAAAAAGGAAAAATTATATCATCG 57.055 29.630 0.00 0.00 0.00 3.84
594 603 7.969536 ATCATCGGTCATTAAGATTACAAGG 57.030 36.000 0.00 0.00 0.00 3.61
615 624 9.734984 ACAAGGTATTTGCTACATTAGTTAGTT 57.265 29.630 0.00 0.00 40.59 2.24
733 744 6.380095 AAAAACGTTGTATCCAAGCTGTTA 57.620 33.333 0.00 0.00 0.00 2.41
743 754 2.895404 TCCAAGCTGTTACTAGTTCCGT 59.105 45.455 0.00 0.00 0.00 4.69
753 764 5.120830 TGTTACTAGTTCCGTCGACTACTTC 59.879 44.000 14.70 0.55 0.00 3.01
882 893 5.988287 TGTTGAGTGGATCTGCATATGTAA 58.012 37.500 4.29 0.00 0.00 2.41
1072 1343 3.609853 CCTTACTGCATCACTTTGGCTA 58.390 45.455 0.00 0.00 0.00 3.93
1146 1417 5.028375 GTGTATTTTTAGCCTTCGATGCAC 58.972 41.667 9.75 0.00 0.00 4.57
1148 1419 3.552604 TTTTTAGCCTTCGATGCACAC 57.447 42.857 9.75 0.00 0.00 3.82
1492 1764 1.048160 CCTTCCCTCTCTCTCTGGGC 61.048 65.000 0.00 0.00 40.69 5.36
1582 1856 2.584031 TGACCTACCTAAGTCCTAGCCA 59.416 50.000 0.00 0.00 31.76 4.75
1601 1875 4.344968 AGCCAGTGAAGCTAAATTTTGGTT 59.655 37.500 15.26 15.26 39.29 3.67
1662 1936 0.242825 TCTCGACACCTGGTTTAGCG 59.757 55.000 0.00 0.00 0.00 4.26
1679 1955 6.921857 GGTTTAGCGATCTTGTATGCTTACTA 59.078 38.462 10.74 2.96 38.82 1.82
1680 1956 7.599245 GGTTTAGCGATCTTGTATGCTTACTAT 59.401 37.037 10.74 2.84 38.82 2.12
1817 2093 2.676319 TACGGTGGTGGAGTTGGGGA 62.676 60.000 0.00 0.00 0.00 4.81
1819 2095 1.074951 GGTGGTGGAGTTGGGGAAG 59.925 63.158 0.00 0.00 0.00 3.46
1820 2096 1.074951 GTGGTGGAGTTGGGGAAGG 59.925 63.158 0.00 0.00 0.00 3.46
1821 2097 2.160171 TGGTGGAGTTGGGGAAGGG 61.160 63.158 0.00 0.00 0.00 3.95
1822 2098 2.763902 GTGGAGTTGGGGAAGGGG 59.236 66.667 0.00 0.00 0.00 4.79
1823 2099 2.534272 TGGAGTTGGGGAAGGGGG 60.534 66.667 0.00 0.00 0.00 5.40
1886 2162 8.197439 CCGATGCTCATATTTATACTGTATGGA 58.803 37.037 10.51 0.00 0.00 3.41
1908 2188 8.463930 TGGATCTCCCATACAAACATTTTATC 57.536 34.615 0.00 0.00 40.82 1.75
1909 2189 8.058235 TGGATCTCCCATACAAACATTTTATCA 58.942 33.333 0.00 0.00 40.82 2.15
2049 2330 4.793201 ACCAACTAGCTTGAAAAGGAACT 58.207 39.130 1.04 0.00 46.35 3.01
2064 2345 4.724279 AGGAACTTAGGACATGGTTTGT 57.276 40.909 0.00 0.00 36.66 2.83
2184 2465 3.502211 ACTTACATCCTTGAAAAGCACCG 59.498 43.478 0.00 0.00 44.44 4.94
2198 2479 2.607750 ACCGGAGCCACACCATCT 60.608 61.111 9.46 0.00 0.00 2.90
2210 2491 1.091771 CACCATCTGACCGACCATGC 61.092 60.000 0.00 0.00 0.00 4.06
2249 2531 1.106944 CACCGCCACCAAAAGTTCCT 61.107 55.000 0.00 0.00 0.00 3.36
2289 2571 1.927487 TGTCAGGCAAGCCAAATCAT 58.073 45.000 14.40 0.00 38.92 2.45
2363 2645 2.279582 CGAGGATATCCACGCCATAC 57.720 55.000 25.32 5.67 42.60 2.39
2431 2713 6.863126 GCTAATCTTGTTTGCACTGTACAATT 59.137 34.615 0.00 0.00 31.96 2.32
2743 3025 8.525729 AGGTATCCCCTTCTTTGTATCATAAT 57.474 34.615 0.00 0.00 42.73 1.28
2837 3119 8.331730 ACCAATCAAAGTGTAGGTATTTGTAC 57.668 34.615 0.00 0.00 35.80 2.90
2970 3252 0.678048 CTGGGCAAGCAGTTACTCCC 60.678 60.000 0.00 0.00 0.00 4.30
3014 3296 2.757314 ACCACTACGTTAGGCTTAGTCC 59.243 50.000 0.00 0.00 30.85 3.85
3044 3326 2.019249 GCACCCTTTATCCCGGTTTAC 58.981 52.381 0.00 0.00 0.00 2.01
3117 3400 1.846007 TTGAACATACATGGGTGGCC 58.154 50.000 0.00 0.00 0.00 5.36
3126 3409 1.919654 ACATGGGTGGCCAATAGTGTA 59.080 47.619 7.24 0.00 0.00 2.90
3140 3423 6.763610 GCCAATAGTGTACTGCTATTTTCTCT 59.236 38.462 15.65 0.00 37.12 3.10
3141 3424 7.042389 GCCAATAGTGTACTGCTATTTTCTCTC 60.042 40.741 15.65 4.34 37.12 3.20
3319 3608 6.780706 ACTACAACATGTTTCTACTTTCCG 57.219 37.500 8.77 0.00 0.00 4.30
3355 3644 2.894126 GACATCACCCCTCATCGACTAT 59.106 50.000 0.00 0.00 0.00 2.12
3460 3749 2.190981 GTTCTGGAACACCGCGTATAG 58.809 52.381 4.92 0.00 40.84 1.31
3558 3847 5.221702 TGAGAAGGATGATGACAAGACAACA 60.222 40.000 0.00 0.00 0.00 3.33
3613 3902 2.470286 GTCGCGCTTTCGAACCAG 59.530 61.111 5.56 0.00 40.43 4.00
3817 4144 5.609423 TCACTTGTTTATTTTTGCATGCCT 58.391 33.333 16.68 0.00 0.00 4.75
3864 4191 7.337942 CAGCTATCCCAATTTAGTCTCAAGTTT 59.662 37.037 0.00 0.00 0.00 2.66
3865 4192 7.337942 AGCTATCCCAATTTAGTCTCAAGTTTG 59.662 37.037 0.00 0.00 0.00 2.93
4159 4487 7.496346 TTTGAGGATTTGTAGACTCTACCAT 57.504 36.000 12.79 5.89 0.00 3.55
4268 4597 6.374053 CCATCCACTTGTTTTGTTTCCTTTTT 59.626 34.615 0.00 0.00 0.00 1.94
4329 4658 6.971726 AGGATGTATAGTACCATCGTCAAA 57.028 37.500 4.43 0.00 0.00 2.69
4446 4818 5.436175 CAAAGGTCAAACATTTCCCCTTTT 58.564 37.500 11.50 0.67 36.17 2.27
4509 5073 9.520515 AACCATGTTATCACTCAAAAATAGTCT 57.479 29.630 0.00 0.00 0.00 3.24
4588 5152 1.412079 TTGCAACCAAGAAGCCACAT 58.588 45.000 0.00 0.00 0.00 3.21
4650 5214 4.583489 TGGCAAAAATCAAATGCAACCAAT 59.417 33.333 0.00 0.00 41.80 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.144503 GGGGCAACTCCATCAGATGAT 59.855 52.381 12.41 0.00 36.21 2.45
10 11 0.548031 GGGGCAACTCCATCAGATGA 59.452 55.000 12.41 0.00 36.21 2.92
11 12 0.549950 AGGGGCAACTCCATCAGATG 59.450 55.000 3.04 3.04 38.59 2.90
12 13 1.302907 AAGGGGCAACTCCATCAGAT 58.697 50.000 0.00 0.00 38.59 2.90
13 14 1.004745 GAAAGGGGCAACTCCATCAGA 59.995 52.381 0.00 0.00 38.59 3.27
14 15 1.005215 AGAAAGGGGCAACTCCATCAG 59.995 52.381 0.00 0.00 38.59 2.90
15 16 1.075601 AGAAAGGGGCAACTCCATCA 58.924 50.000 0.00 0.00 38.59 3.07
16 17 1.821136 CAAGAAAGGGGCAACTCCATC 59.179 52.381 0.00 0.00 38.59 3.51
17 18 1.550869 CCAAGAAAGGGGCAACTCCAT 60.551 52.381 0.00 0.00 38.59 3.41
18 19 0.178964 CCAAGAAAGGGGCAACTCCA 60.179 55.000 0.00 0.00 38.59 3.86
19 20 0.112412 TCCAAGAAAGGGGCAACTCC 59.888 55.000 0.00 0.00 38.59 3.85
20 21 1.073923 TCTCCAAGAAAGGGGCAACTC 59.926 52.381 0.00 0.00 37.29 3.01
21 22 1.149101 TCTCCAAGAAAGGGGCAACT 58.851 50.000 0.00 0.00 0.00 3.16
22 23 1.821136 CATCTCCAAGAAAGGGGCAAC 59.179 52.381 0.00 0.00 0.00 4.17
23 24 1.892329 GCATCTCCAAGAAAGGGGCAA 60.892 52.381 0.00 0.00 0.00 4.52
24 25 0.323725 GCATCTCCAAGAAAGGGGCA 60.324 55.000 0.00 0.00 0.00 5.36
25 26 0.323725 TGCATCTCCAAGAAAGGGGC 60.324 55.000 0.00 0.00 0.00 5.80
26 27 2.220653 TTGCATCTCCAAGAAAGGGG 57.779 50.000 0.00 0.00 0.00 4.79
27 28 4.605640 TTTTTGCATCTCCAAGAAAGGG 57.394 40.909 0.00 0.00 0.00 3.95
28 29 5.786311 TGATTTTTGCATCTCCAAGAAAGG 58.214 37.500 0.00 0.00 0.00 3.11
29 30 7.900782 AATGATTTTTGCATCTCCAAGAAAG 57.099 32.000 0.00 0.00 0.00 2.62
30 31 8.680039 AAAATGATTTTTGCATCTCCAAGAAA 57.320 26.923 0.00 0.00 33.79 2.52
31 32 8.680039 AAAAATGATTTTTGCATCTCCAAGAA 57.320 26.923 14.50 0.00 41.04 2.52
74 75 9.725019 TCTGTTAAGAGCATTTTCAATAGAAGA 57.275 29.630 0.00 0.00 34.71 2.87
75 76 9.766277 GTCTGTTAAGAGCATTTTCAATAGAAG 57.234 33.333 0.00 0.00 31.60 2.85
76 77 9.507329 AGTCTGTTAAGAGCATTTTCAATAGAA 57.493 29.630 0.00 0.00 31.37 2.10
77 78 8.939929 CAGTCTGTTAAGAGCATTTTCAATAGA 58.060 33.333 0.00 0.00 31.37 1.98
78 79 8.725148 ACAGTCTGTTAAGAGCATTTTCAATAG 58.275 33.333 0.00 0.00 31.37 1.73
79 80 8.621532 ACAGTCTGTTAAGAGCATTTTCAATA 57.378 30.769 0.00 0.00 31.37 1.90
80 81 7.516198 ACAGTCTGTTAAGAGCATTTTCAAT 57.484 32.000 0.00 0.00 31.37 2.57
81 82 6.942532 ACAGTCTGTTAAGAGCATTTTCAA 57.057 33.333 0.00 0.00 31.37 2.69
82 83 6.292865 CGAACAGTCTGTTAAGAGCATTTTCA 60.293 38.462 18.17 0.00 41.28 2.69
83 84 6.074005 CGAACAGTCTGTTAAGAGCATTTTC 58.926 40.000 18.17 0.91 41.28 2.29
84 85 5.527582 ACGAACAGTCTGTTAAGAGCATTTT 59.472 36.000 18.17 0.00 41.28 1.82
85 86 5.057149 ACGAACAGTCTGTTAAGAGCATTT 58.943 37.500 18.17 0.00 41.28 2.32
86 87 4.632153 ACGAACAGTCTGTTAAGAGCATT 58.368 39.130 18.17 0.00 41.28 3.56
87 88 4.258702 ACGAACAGTCTGTTAAGAGCAT 57.741 40.909 18.17 0.00 41.28 3.79
88 89 3.728076 ACGAACAGTCTGTTAAGAGCA 57.272 42.857 18.17 0.00 41.28 4.26
89 90 4.496183 CGATACGAACAGTCTGTTAAGAGC 59.504 45.833 18.17 8.05 41.28 4.09
90 91 5.508573 CACGATACGAACAGTCTGTTAAGAG 59.491 44.000 18.17 12.02 41.28 2.85
91 92 5.388111 CACGATACGAACAGTCTGTTAAGA 58.612 41.667 18.17 6.78 41.28 2.10
92 93 4.557690 CCACGATACGAACAGTCTGTTAAG 59.442 45.833 18.17 16.48 41.28 1.85
93 94 4.478699 CCACGATACGAACAGTCTGTTAA 58.521 43.478 18.17 7.65 41.28 2.01
94 95 3.671433 GCCACGATACGAACAGTCTGTTA 60.671 47.826 18.17 3.68 41.28 2.41
95 96 2.925306 GCCACGATACGAACAGTCTGTT 60.925 50.000 18.20 18.20 44.37 3.16
96 97 1.402456 GCCACGATACGAACAGTCTGT 60.402 52.381 0.00 0.00 0.00 3.41
97 98 1.269166 GCCACGATACGAACAGTCTG 58.731 55.000 0.00 0.00 0.00 3.51
98 99 0.172803 GGCCACGATACGAACAGTCT 59.827 55.000 0.00 0.00 0.00 3.24
99 100 1.138047 CGGCCACGATACGAACAGTC 61.138 60.000 2.24 0.00 44.60 3.51
100 101 1.153901 CGGCCACGATACGAACAGT 60.154 57.895 2.24 0.00 44.60 3.55
101 102 1.876714 CCGGCCACGATACGAACAG 60.877 63.158 2.24 0.00 44.60 3.16
102 103 2.182284 CCGGCCACGATACGAACA 59.818 61.111 2.24 0.00 44.60 3.18
103 104 1.875364 GTCCGGCCACGATACGAAC 60.875 63.158 2.24 0.00 44.60 3.95
104 105 1.597797 AAGTCCGGCCACGATACGAA 61.598 55.000 2.24 0.00 44.60 3.85
105 106 1.597797 AAAGTCCGGCCACGATACGA 61.598 55.000 2.24 0.00 44.60 3.43
106 107 1.153706 AAAGTCCGGCCACGATACG 60.154 57.895 2.24 0.00 44.60 3.06
107 108 0.390735 ACAAAGTCCGGCCACGATAC 60.391 55.000 2.24 0.00 44.60 2.24
108 109 0.322322 AACAAAGTCCGGCCACGATA 59.678 50.000 2.24 0.00 44.60 2.92
109 110 0.536460 AAACAAAGTCCGGCCACGAT 60.536 50.000 2.24 0.00 44.60 3.73
110 111 1.153127 AAACAAAGTCCGGCCACGA 60.153 52.632 2.24 0.00 44.60 4.35
111 112 1.008995 CAAACAAAGTCCGGCCACG 60.009 57.895 2.24 0.00 40.55 4.94
112 113 1.299850 GCAAACAAAGTCCGGCCAC 60.300 57.895 2.24 0.00 0.00 5.01
113 114 1.452145 GAGCAAACAAAGTCCGGCCA 61.452 55.000 2.24 0.00 0.00 5.36
114 115 1.285950 GAGCAAACAAAGTCCGGCC 59.714 57.895 0.00 0.00 0.00 6.13
115 116 0.040067 CTGAGCAAACAAAGTCCGGC 60.040 55.000 0.00 0.00 0.00 6.13
116 117 0.040067 GCTGAGCAAACAAAGTCCGG 60.040 55.000 0.00 0.00 0.00 5.14
117 118 0.384725 CGCTGAGCAAACAAAGTCCG 60.385 55.000 4.88 0.00 0.00 4.79
118 119 0.040067 CCGCTGAGCAAACAAAGTCC 60.040 55.000 4.88 0.00 0.00 3.85
119 120 0.944386 TCCGCTGAGCAAACAAAGTC 59.056 50.000 4.88 0.00 0.00 3.01
120 121 0.663153 GTCCGCTGAGCAAACAAAGT 59.337 50.000 4.88 0.00 0.00 2.66
121 122 0.662619 TGTCCGCTGAGCAAACAAAG 59.337 50.000 4.88 0.00 0.00 2.77
122 123 1.317613 ATGTCCGCTGAGCAAACAAA 58.682 45.000 12.06 0.00 0.00 2.83
123 124 2.076100 CTATGTCCGCTGAGCAAACAA 58.924 47.619 12.06 3.11 0.00 2.83
124 125 1.725641 CTATGTCCGCTGAGCAAACA 58.274 50.000 10.70 10.70 0.00 2.83
125 126 0.375106 GCTATGTCCGCTGAGCAAAC 59.625 55.000 4.88 1.91 34.96 2.93
126 127 1.083806 CGCTATGTCCGCTGAGCAAA 61.084 55.000 4.88 0.00 34.49 3.68
127 128 1.519234 CGCTATGTCCGCTGAGCAA 60.519 57.895 4.88 0.00 34.49 3.91
128 129 2.104928 CGCTATGTCCGCTGAGCA 59.895 61.111 4.88 0.00 34.49 4.26
135 136 4.873129 ACGCCTGCGCTATGTCCG 62.873 66.667 9.73 5.46 44.19 4.79
136 137 3.264897 CACGCCTGCGCTATGTCC 61.265 66.667 9.73 0.00 44.19 4.02
137 138 2.202743 TCACGCCTGCGCTATGTC 60.203 61.111 9.73 0.00 44.19 3.06
138 139 2.202797 CTCACGCCTGCGCTATGT 60.203 61.111 9.73 0.00 44.19 2.29
139 140 3.634072 GCTCACGCCTGCGCTATG 61.634 66.667 9.73 2.79 44.19 2.23
140 141 3.664025 TTGCTCACGCCTGCGCTAT 62.664 57.895 9.73 0.00 44.19 2.97
141 142 4.371590 TTGCTCACGCCTGCGCTA 62.372 61.111 9.73 0.00 44.19 4.26
164 165 4.431131 ATCTTGGCCCTGGCACCG 62.431 66.667 10.86 0.00 44.11 4.94
165 166 2.440980 GATCTTGGCCCTGGCACC 60.441 66.667 10.86 0.64 44.11 5.01
166 167 1.000396 AAGATCTTGGCCCTGGCAC 60.000 57.895 7.30 0.10 44.11 5.01
167 168 1.000521 CAAGATCTTGGCCCTGGCA 60.001 57.895 25.14 0.00 44.11 4.92
168 169 1.000396 ACAAGATCTTGGCCCTGGC 60.000 57.895 33.11 0.00 44.45 4.85
169 170 0.038744 ACACAAGATCTTGGCCCTGG 59.961 55.000 33.11 19.13 44.45 4.45
170 171 1.457346 GACACAAGATCTTGGCCCTG 58.543 55.000 33.11 25.00 44.45 4.45
171 172 0.329596 GGACACAAGATCTTGGCCCT 59.670 55.000 33.11 14.33 44.45 5.19
172 173 0.329596 AGGACACAAGATCTTGGCCC 59.670 55.000 33.11 27.98 44.45 5.80
173 174 2.206576 AAGGACACAAGATCTTGGCC 57.793 50.000 33.11 28.60 44.45 5.36
174 175 3.944087 AGTAAGGACACAAGATCTTGGC 58.056 45.455 33.11 22.77 44.45 4.52
189 190 5.420739 GGAATCTGATCTAGGCCTAGTAAGG 59.579 48.000 33.84 22.98 46.76 2.69
190 191 5.420739 GGGAATCTGATCTAGGCCTAGTAAG 59.579 48.000 33.84 27.38 34.84 2.34
191 192 5.334421 GGGAATCTGATCTAGGCCTAGTAA 58.666 45.833 33.84 19.94 34.84 2.24
192 193 4.264442 GGGGAATCTGATCTAGGCCTAGTA 60.264 50.000 33.84 22.73 34.84 1.82
193 194 3.503227 GGGGAATCTGATCTAGGCCTAGT 60.503 52.174 33.84 23.12 34.84 2.57
194 195 3.103742 GGGGAATCTGATCTAGGCCTAG 58.896 54.545 30.94 30.94 34.56 3.02
195 196 2.730254 AGGGGAATCTGATCTAGGCCTA 59.270 50.000 13.09 13.09 0.00 3.93
196 197 1.511747 AGGGGAATCTGATCTAGGCCT 59.488 52.381 11.78 11.78 0.00 5.19
197 198 2.037385 AGGGGAATCTGATCTAGGCC 57.963 55.000 0.00 0.00 0.00 5.19
198 199 5.770685 ATTTAGGGGAATCTGATCTAGGC 57.229 43.478 0.00 0.00 0.00 3.93
199 200 9.508642 GTTTTATTTAGGGGAATCTGATCTAGG 57.491 37.037 0.00 0.00 0.00 3.02
203 204 9.508642 CCTAGTTTTATTTAGGGGAATCTGATC 57.491 37.037 0.00 0.00 34.13 2.92
204 205 7.945109 GCCTAGTTTTATTTAGGGGAATCTGAT 59.055 37.037 0.24 0.00 37.50 2.90
205 206 7.287810 GCCTAGTTTTATTTAGGGGAATCTGA 58.712 38.462 0.24 0.00 37.50 3.27
206 207 7.511959 GCCTAGTTTTATTTAGGGGAATCTG 57.488 40.000 0.24 0.00 37.50 2.90
213 214 4.773013 TCCACGCCTAGTTTTATTTAGGG 58.227 43.478 0.24 0.00 37.50 3.53
214 215 6.053005 TCATCCACGCCTAGTTTTATTTAGG 58.947 40.000 0.00 0.00 39.56 2.69
215 216 6.984474 TCTCATCCACGCCTAGTTTTATTTAG 59.016 38.462 0.00 0.00 0.00 1.85
216 217 6.880484 TCTCATCCACGCCTAGTTTTATTTA 58.120 36.000 0.00 0.00 0.00 1.40
217 218 5.741011 TCTCATCCACGCCTAGTTTTATTT 58.259 37.500 0.00 0.00 0.00 1.40
218 219 5.353394 TCTCATCCACGCCTAGTTTTATT 57.647 39.130 0.00 0.00 0.00 1.40
219 220 5.353394 TTCTCATCCACGCCTAGTTTTAT 57.647 39.130 0.00 0.00 0.00 1.40
220 221 4.811969 TTCTCATCCACGCCTAGTTTTA 57.188 40.909 0.00 0.00 0.00 1.52
221 222 3.695830 TTCTCATCCACGCCTAGTTTT 57.304 42.857 0.00 0.00 0.00 2.43
222 223 3.914426 ATTCTCATCCACGCCTAGTTT 57.086 42.857 0.00 0.00 0.00 2.66
223 224 3.055094 ACAATTCTCATCCACGCCTAGTT 60.055 43.478 0.00 0.00 0.00 2.24
224 225 2.501723 ACAATTCTCATCCACGCCTAGT 59.498 45.455 0.00 0.00 0.00 2.57
225 226 3.185246 ACAATTCTCATCCACGCCTAG 57.815 47.619 0.00 0.00 0.00 3.02
226 227 3.055458 TCAACAATTCTCATCCACGCCTA 60.055 43.478 0.00 0.00 0.00 3.93
227 228 2.086869 CAACAATTCTCATCCACGCCT 58.913 47.619 0.00 0.00 0.00 5.52
228 229 2.083774 TCAACAATTCTCATCCACGCC 58.916 47.619 0.00 0.00 0.00 5.68
229 230 2.474526 CGTCAACAATTCTCATCCACGC 60.475 50.000 0.00 0.00 0.00 5.34
230 231 2.736721 ACGTCAACAATTCTCATCCACG 59.263 45.455 0.00 0.00 0.00 4.94
231 232 7.534085 TTATACGTCAACAATTCTCATCCAC 57.466 36.000 0.00 0.00 0.00 4.02
232 233 8.611757 CATTTATACGTCAACAATTCTCATCCA 58.388 33.333 0.00 0.00 0.00 3.41
233 234 8.826710 TCATTTATACGTCAACAATTCTCATCC 58.173 33.333 0.00 0.00 0.00 3.51
241 242 9.179909 TGGGTTATTCATTTATACGTCAACAAT 57.820 29.630 0.00 0.00 0.00 2.71
242 243 8.452534 GTGGGTTATTCATTTATACGTCAACAA 58.547 33.333 0.00 0.00 0.00 2.83
243 244 7.066043 GGTGGGTTATTCATTTATACGTCAACA 59.934 37.037 0.00 0.00 0.00 3.33
244 245 7.281549 AGGTGGGTTATTCATTTATACGTCAAC 59.718 37.037 0.00 0.00 0.00 3.18
245 246 7.340256 AGGTGGGTTATTCATTTATACGTCAA 58.660 34.615 0.00 0.00 0.00 3.18
246 247 6.891388 AGGTGGGTTATTCATTTATACGTCA 58.109 36.000 0.00 0.00 0.00 4.35
247 248 7.797038 AAGGTGGGTTATTCATTTATACGTC 57.203 36.000 0.00 0.00 0.00 4.34
248 249 8.050930 AGAAAGGTGGGTTATTCATTTATACGT 58.949 33.333 0.00 0.00 0.00 3.57
249 250 8.446599 AGAAAGGTGGGTTATTCATTTATACG 57.553 34.615 0.00 0.00 0.00 3.06
252 253 9.936329 ATGTAGAAAGGTGGGTTATTCATTTAT 57.064 29.630 0.00 0.00 0.00 1.40
253 254 9.403583 GATGTAGAAAGGTGGGTTATTCATTTA 57.596 33.333 0.00 0.00 0.00 1.40
254 255 7.893302 TGATGTAGAAAGGTGGGTTATTCATTT 59.107 33.333 0.00 0.00 0.00 2.32
255 256 7.410174 TGATGTAGAAAGGTGGGTTATTCATT 58.590 34.615 0.00 0.00 0.00 2.57
256 257 6.969043 TGATGTAGAAAGGTGGGTTATTCAT 58.031 36.000 0.00 0.00 0.00 2.57
257 258 6.381498 TGATGTAGAAAGGTGGGTTATTCA 57.619 37.500 0.00 0.00 0.00 2.57
258 259 5.297029 GCTGATGTAGAAAGGTGGGTTATTC 59.703 44.000 0.00 0.00 0.00 1.75
259 260 5.044846 AGCTGATGTAGAAAGGTGGGTTATT 60.045 40.000 0.00 0.00 0.00 1.40
260 261 4.475016 AGCTGATGTAGAAAGGTGGGTTAT 59.525 41.667 0.00 0.00 0.00 1.89
261 262 3.844211 AGCTGATGTAGAAAGGTGGGTTA 59.156 43.478 0.00 0.00 0.00 2.85
262 263 2.644798 AGCTGATGTAGAAAGGTGGGTT 59.355 45.455 0.00 0.00 0.00 4.11
263 264 2.269940 AGCTGATGTAGAAAGGTGGGT 58.730 47.619 0.00 0.00 0.00 4.51
264 265 3.012518 CAAGCTGATGTAGAAAGGTGGG 58.987 50.000 0.00 0.00 0.00 4.61
265 266 3.942829 TCAAGCTGATGTAGAAAGGTGG 58.057 45.455 0.00 0.00 0.00 4.61
266 267 6.506500 AATTCAAGCTGATGTAGAAAGGTG 57.493 37.500 0.00 0.00 0.00 4.00
267 268 7.530426 AAAATTCAAGCTGATGTAGAAAGGT 57.470 32.000 0.00 0.00 0.00 3.50
268 269 7.330208 CCAAAAATTCAAGCTGATGTAGAAAGG 59.670 37.037 0.00 0.00 0.00 3.11
269 270 7.330208 CCCAAAAATTCAAGCTGATGTAGAAAG 59.670 37.037 0.00 0.00 0.00 2.62
270 271 7.153985 CCCAAAAATTCAAGCTGATGTAGAAA 58.846 34.615 0.00 0.00 0.00 2.52
271 272 6.267471 ACCCAAAAATTCAAGCTGATGTAGAA 59.733 34.615 0.00 0.00 0.00 2.10
272 273 5.774690 ACCCAAAAATTCAAGCTGATGTAGA 59.225 36.000 0.00 0.00 0.00 2.59
273 274 5.865552 CACCCAAAAATTCAAGCTGATGTAG 59.134 40.000 0.00 0.00 0.00 2.74
274 275 5.538053 TCACCCAAAAATTCAAGCTGATGTA 59.462 36.000 0.00 0.00 0.00 2.29
275 276 4.344679 TCACCCAAAAATTCAAGCTGATGT 59.655 37.500 0.00 0.00 0.00 3.06
276 277 4.885413 TCACCCAAAAATTCAAGCTGATG 58.115 39.130 0.00 0.00 0.00 3.07
277 278 5.070847 AGTTCACCCAAAAATTCAAGCTGAT 59.929 36.000 0.00 0.00 0.00 2.90
278 279 4.405358 AGTTCACCCAAAAATTCAAGCTGA 59.595 37.500 0.00 0.00 0.00 4.26
279 280 4.508861 CAGTTCACCCAAAAATTCAAGCTG 59.491 41.667 0.00 0.00 0.00 4.24
280 281 4.405358 TCAGTTCACCCAAAAATTCAAGCT 59.595 37.500 0.00 0.00 0.00 3.74
281 282 4.692228 TCAGTTCACCCAAAAATTCAAGC 58.308 39.130 0.00 0.00 0.00 4.01
282 283 6.985645 TCAATCAGTTCACCCAAAAATTCAAG 59.014 34.615 0.00 0.00 0.00 3.02
283 284 6.882656 TCAATCAGTTCACCCAAAAATTCAA 58.117 32.000 0.00 0.00 0.00 2.69
284 285 6.477053 TCAATCAGTTCACCCAAAAATTCA 57.523 33.333 0.00 0.00 0.00 2.57
285 286 6.128472 GCATCAATCAGTTCACCCAAAAATTC 60.128 38.462 0.00 0.00 0.00 2.17
286 287 5.702209 GCATCAATCAGTTCACCCAAAAATT 59.298 36.000 0.00 0.00 0.00 1.82
287 288 5.240121 GCATCAATCAGTTCACCCAAAAAT 58.760 37.500 0.00 0.00 0.00 1.82
288 289 4.630111 GCATCAATCAGTTCACCCAAAAA 58.370 39.130 0.00 0.00 0.00 1.94
289 290 3.305267 CGCATCAATCAGTTCACCCAAAA 60.305 43.478 0.00 0.00 0.00 2.44
290 291 2.228582 CGCATCAATCAGTTCACCCAAA 59.771 45.455 0.00 0.00 0.00 3.28
291 292 1.811965 CGCATCAATCAGTTCACCCAA 59.188 47.619 0.00 0.00 0.00 4.12
292 293 1.271325 ACGCATCAATCAGTTCACCCA 60.271 47.619 0.00 0.00 0.00 4.51
293 294 1.131126 CACGCATCAATCAGTTCACCC 59.869 52.381 0.00 0.00 0.00 4.61
294 295 1.466360 GCACGCATCAATCAGTTCACC 60.466 52.381 0.00 0.00 0.00 4.02
295 296 1.197492 TGCACGCATCAATCAGTTCAC 59.803 47.619 0.00 0.00 0.00 3.18
296 297 1.465777 CTGCACGCATCAATCAGTTCA 59.534 47.619 0.00 0.00 0.00 3.18
297 298 1.466167 ACTGCACGCATCAATCAGTTC 59.534 47.619 0.00 0.00 34.69 3.01
298 299 1.527034 ACTGCACGCATCAATCAGTT 58.473 45.000 0.00 0.00 34.69 3.16
299 300 1.527034 AACTGCACGCATCAATCAGT 58.473 45.000 0.00 0.00 39.42 3.41
300 301 2.624316 AAACTGCACGCATCAATCAG 57.376 45.000 0.00 0.00 0.00 2.90
301 302 2.810852 TGTAAACTGCACGCATCAATCA 59.189 40.909 0.00 0.00 0.00 2.57
302 303 3.469899 TGTAAACTGCACGCATCAATC 57.530 42.857 0.00 0.00 0.00 2.67
303 304 4.168014 CAATGTAAACTGCACGCATCAAT 58.832 39.130 0.00 0.00 0.00 2.57
304 305 3.004210 ACAATGTAAACTGCACGCATCAA 59.996 39.130 0.00 0.00 0.00 2.57
305 306 2.551887 ACAATGTAAACTGCACGCATCA 59.448 40.909 0.00 0.00 0.00 3.07
306 307 3.201726 ACAATGTAAACTGCACGCATC 57.798 42.857 0.00 0.00 0.00 3.91
307 308 4.494035 CGATACAATGTAAACTGCACGCAT 60.494 41.667 0.00 0.00 0.00 4.73
308 309 3.181525 CGATACAATGTAAACTGCACGCA 60.182 43.478 0.00 0.00 0.00 5.24
309 310 3.342269 CGATACAATGTAAACTGCACGC 58.658 45.455 0.00 0.00 0.00 5.34
310 311 3.615056 TCCGATACAATGTAAACTGCACG 59.385 43.478 0.00 0.00 0.00 5.34
311 312 5.321516 GTTCCGATACAATGTAAACTGCAC 58.678 41.667 0.00 0.00 0.00 4.57
312 313 4.393680 GGTTCCGATACAATGTAAACTGCA 59.606 41.667 0.00 0.00 0.00 4.41
313 314 4.493545 CGGTTCCGATACAATGTAAACTGC 60.494 45.833 5.19 0.00 0.00 4.40
314 315 4.865925 TCGGTTCCGATACAATGTAAACTG 59.134 41.667 10.00 2.94 33.26 3.16
315 316 5.075858 TCGGTTCCGATACAATGTAAACT 57.924 39.130 10.00 0.00 33.26 2.66
316 317 5.104374 TCTCGGTTCCGATACAATGTAAAC 58.896 41.667 14.34 0.00 37.83 2.01
317 318 5.327616 TCTCGGTTCCGATACAATGTAAA 57.672 39.130 14.34 0.00 37.83 2.01
318 319 4.735578 GCTCTCGGTTCCGATACAATGTAA 60.736 45.833 14.34 0.00 37.83 2.41
319 320 3.243301 GCTCTCGGTTCCGATACAATGTA 60.243 47.826 14.34 0.00 37.83 2.29
320 321 2.481449 GCTCTCGGTTCCGATACAATGT 60.481 50.000 14.34 0.00 37.83 2.71
321 322 2.128035 GCTCTCGGTTCCGATACAATG 58.872 52.381 14.34 2.33 37.83 2.82
322 323 1.068741 GGCTCTCGGTTCCGATACAAT 59.931 52.381 14.34 0.00 37.83 2.71
323 324 0.458669 GGCTCTCGGTTCCGATACAA 59.541 55.000 14.34 0.92 37.83 2.41
324 325 0.681887 TGGCTCTCGGTTCCGATACA 60.682 55.000 14.34 8.40 37.83 2.29
325 326 0.248949 GTGGCTCTCGGTTCCGATAC 60.249 60.000 14.34 7.01 37.83 2.24
326 327 0.681887 TGTGGCTCTCGGTTCCGATA 60.682 55.000 14.34 6.77 37.83 2.92
327 328 1.330655 ATGTGGCTCTCGGTTCCGAT 61.331 55.000 14.34 0.00 37.83 4.18
328 329 1.982395 ATGTGGCTCTCGGTTCCGA 60.982 57.895 13.34 13.34 36.95 4.55
329 330 1.811266 CATGTGGCTCTCGGTTCCG 60.811 63.158 4.74 4.74 0.00 4.30
330 331 1.021390 CACATGTGGCTCTCGGTTCC 61.021 60.000 18.51 0.00 0.00 3.62
331 332 0.037326 TCACATGTGGCTCTCGGTTC 60.037 55.000 25.16 0.00 0.00 3.62
332 333 0.036952 CTCACATGTGGCTCTCGGTT 60.037 55.000 25.16 0.00 0.00 4.44
333 334 1.593787 CTCACATGTGGCTCTCGGT 59.406 57.895 25.16 0.00 0.00 4.69
334 335 1.153489 CCTCACATGTGGCTCTCGG 60.153 63.158 25.16 12.10 0.00 4.63
335 336 1.153489 CCCTCACATGTGGCTCTCG 60.153 63.158 25.16 6.84 0.00 4.04
336 337 1.222936 CCCCTCACATGTGGCTCTC 59.777 63.158 25.16 0.00 0.00 3.20
337 338 2.304056 CCCCCTCACATGTGGCTCT 61.304 63.158 25.16 0.00 0.00 4.09
338 339 2.262774 CTCCCCCTCACATGTGGCTC 62.263 65.000 25.16 0.00 0.00 4.70
339 340 2.204136 TCCCCCTCACATGTGGCT 60.204 61.111 25.16 0.00 0.00 4.75
340 341 2.273449 CTCCCCCTCACATGTGGC 59.727 66.667 25.16 0.00 0.00 5.01
341 342 1.300963 CACTCCCCCTCACATGTGG 59.699 63.158 25.16 15.39 0.00 4.17
342 343 0.321919 CACACTCCCCCTCACATGTG 60.322 60.000 20.18 20.18 0.00 3.21
346 347 0.692756 TCAACACACTCCCCCTCACA 60.693 55.000 0.00 0.00 0.00 3.58
366 367 6.369890 AGCAAGATGGACTATGCATTTATACG 59.630 38.462 3.54 0.00 41.18 3.06
375 376 4.132336 TGATGAAGCAAGATGGACTATGC 58.868 43.478 0.00 0.00 39.06 3.14
405 406 2.549754 ACTTCACGCAGTCATCCAAAAG 59.450 45.455 0.00 0.00 41.61 2.27
416 417 4.686091 TGATTCTTGTAGAACTTCACGCAG 59.314 41.667 0.00 0.00 37.00 5.18
527 536 8.487176 CCGAGGATAGTTTGTTTCAAAATTTTG 58.513 33.333 22.40 22.40 39.48 2.44
530 539 7.519032 TCCGAGGATAGTTTGTTTCAAAATT 57.481 32.000 0.91 0.00 0.00 1.82
576 585 8.903820 AGCAAATACCTTGTAATCTTAATGACC 58.096 33.333 0.00 0.00 37.36 4.02
634 643 7.939588 AGCTACTAACTCAGATTTCAACCTTTT 59.060 33.333 0.00 0.00 0.00 2.27
635 644 7.454225 AGCTACTAACTCAGATTTCAACCTTT 58.546 34.615 0.00 0.00 0.00 3.11
728 739 4.629200 AGTAGTCGACGGAACTAGTAACAG 59.371 45.833 16.38 0.00 0.00 3.16
733 744 3.668447 TGAAGTAGTCGACGGAACTAGT 58.332 45.455 17.67 7.03 0.00 2.57
743 754 7.387673 ACATTTGTTTCATGATGAAGTAGTCGA 59.612 33.333 8.01 0.00 37.70 4.20
753 764 7.953173 GTGTTGCATTACATTTGTTTCATGATG 59.047 33.333 0.00 0.00 0.00 3.07
794 805 7.987820 TGGATATAGATCAATTGTCCCATGAA 58.012 34.615 5.13 0.00 33.27 2.57
927 1178 5.582269 AGATGGATGTTATGTGAAGAACGTG 59.418 40.000 0.00 0.00 0.00 4.49
928 1179 5.734720 AGATGGATGTTATGTGAAGAACGT 58.265 37.500 0.00 0.00 0.00 3.99
1072 1343 4.032960 TGCCACCTACATCTGTTGATTT 57.967 40.909 0.00 0.00 0.00 2.17
1146 1417 6.867662 AATAAGGAACAGAACAAGACTGTG 57.132 37.500 0.00 0.00 46.01 3.66
1443 1715 0.634465 AAGGAGAGAGAGGGAGGGAC 59.366 60.000 0.00 0.00 0.00 4.46
1492 1764 1.788886 GCTTGCTTGGCTTCGAAAAAG 59.211 47.619 0.00 5.02 0.00 2.27
1601 1875 3.451178 GCACCTTGTCTCCCTCACTAATA 59.549 47.826 0.00 0.00 0.00 0.98
1679 1955 9.653287 TTCGTCTGTAGAGAAATGTATTTTGAT 57.347 29.630 0.00 0.00 0.00 2.57
1680 1956 9.483916 TTTCGTCTGTAGAGAAATGTATTTTGA 57.516 29.630 0.00 0.00 0.00 2.69
1913 2193 9.674068 TGTATGTCTTTGTATATGGCAGTTTTA 57.326 29.630 0.00 0.00 0.00 1.52
1920 2200 8.671384 TTTAGGTGTATGTCTTTGTATATGGC 57.329 34.615 0.00 0.00 0.00 4.40
2049 2330 3.886505 GTCACCAACAAACCATGTCCTAA 59.113 43.478 0.00 0.00 42.99 2.69
2064 2345 2.388310 TTGTCACGTCAAGTCACCAA 57.612 45.000 0.00 0.00 0.00 3.67
2184 2465 1.078143 GGTCAGATGGTGTGGCTCC 60.078 63.158 0.00 0.00 0.00 4.70
2249 2531 1.210722 TGGTGTAAGGTCAGTGCAACA 59.789 47.619 0.00 0.00 41.43 3.33
2289 2571 5.084519 ACATCTTGTCCAGTAGGTTACTCA 58.915 41.667 0.00 0.00 36.76 3.41
2363 2645 2.496070 TCTTGGAGTTGGTATGAGGTCG 59.504 50.000 0.00 0.00 0.00 4.79
2662 2944 2.225091 TGGGTAGTCCTGGTCGAGTTAA 60.225 50.000 0.00 0.00 36.20 2.01
2743 3025 5.661056 ATGTGAAGAAACGGACATCTCTA 57.339 39.130 0.00 0.00 0.00 2.43
2800 3082 8.732746 ACACTTTGATTGGTACCTATATGTTC 57.267 34.615 14.36 0.09 0.00 3.18
2813 3095 8.330466 TGTACAAATACCTACACTTTGATTGG 57.670 34.615 0.00 0.00 34.69 3.16
2819 3101 7.380536 TGTCGATGTACAAATACCTACACTTT 58.619 34.615 0.00 0.00 0.00 2.66
2837 3119 7.851508 TGAAGAAAACTTTAGTCTTGTCGATG 58.148 34.615 0.00 0.00 31.80 3.84
2961 3243 4.166144 CCATAACTTGATGGGGGAGTAACT 59.834 45.833 0.00 0.00 42.46 2.24
2970 3252 2.332063 ACTCGCCATAACTTGATGGG 57.668 50.000 4.67 0.00 45.73 4.00
3117 3400 8.812329 GTGAGAGAAAATAGCAGTACACTATTG 58.188 37.037 17.18 0.00 39.63 1.90
3126 3409 8.677148 TTTTAGTTGTGAGAGAAAATAGCAGT 57.323 30.769 0.00 0.00 0.00 4.40
3283 3571 7.369803 ACATGTTGTAGTTAGCAAGAATCTG 57.630 36.000 0.00 0.00 0.00 2.90
3319 3608 3.425193 GTGATGTCCATTTTCGTGCAAAC 59.575 43.478 0.00 0.00 0.00 2.93
3355 3644 4.202461 CCAATCTTCGGATTTGGGATCCTA 60.202 45.833 12.58 1.47 42.18 2.94
3444 3733 1.470285 GCTTCTATACGCGGTGTTCCA 60.470 52.381 12.47 0.00 0.00 3.53
3460 3749 4.771590 TGACAAATCCAGTCAATGCTTC 57.228 40.909 0.00 0.00 42.57 3.86
3492 3781 3.200825 CCATTGGAGGACCATGAGTACTT 59.799 47.826 0.00 0.00 41.02 2.24
3558 3847 3.056107 TCTTAACATGCCTGAAGTACGCT 60.056 43.478 0.00 0.00 0.00 5.07
3613 3902 9.676861 AACTAAAGGGGTCATATTAACTGTAAC 57.323 33.333 0.00 0.00 0.00 2.50
3817 4144 3.519107 TGACCTCAGCACCAAATGAGATA 59.481 43.478 3.83 0.00 44.68 1.98
3929 4256 8.795842 TTAGTTATCCGATGGTTGTATTTTGT 57.204 30.769 0.00 0.00 0.00 2.83
4006 4334 6.972901 GCACTCTATTTACCATTTAAGTTGCC 59.027 38.462 0.00 0.00 0.00 4.52
4054 4382 7.084268 AGCATTACCAAGATATTTAGCCTCT 57.916 36.000 0.00 0.00 0.00 3.69
4055 4383 9.454859 AATAGCATTACCAAGATATTTAGCCTC 57.545 33.333 0.00 0.00 0.00 4.70
4209 4537 8.130671 AGTTGCTTAGATACCAGTAAACAGTA 57.869 34.615 0.00 0.00 0.00 2.74
4329 4658 7.451877 TCTCCAACTAACTGTTTGAGAGACTAT 59.548 37.037 8.91 0.00 46.14 2.12
4446 4818 1.270094 CGGGTGTCAAGCTAGTTGTGA 60.270 52.381 0.00 0.00 37.43 3.58
4519 5083 6.183360 CGGGTCATCTAGTTTCATAGAAGACA 60.183 42.308 16.42 0.00 45.64 3.41
4650 5214 5.046878 TCCTTCAAATCGCTCACCTAACTTA 60.047 40.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.