Multiple sequence alignment - TraesCS5B01G266700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G266700 chr5B 100.000 4405 0 0 1579 5983 451179851 451184255 0.000000e+00 8135.0
1 TraesCS5B01G266700 chr5B 100.000 1310 0 0 1 1310 451178273 451179582 0.000000e+00 2420.0
2 TraesCS5B01G266700 chr5B 79.734 602 86 18 5120 5703 679577368 679576785 2.600000e-108 403.0
3 TraesCS5B01G266700 chr5B 87.919 298 33 3 59 355 451178374 451178669 1.230000e-91 348.0
4 TraesCS5B01G266700 chr5D 96.401 2084 61 5 1691 3770 377985932 377988005 0.000000e+00 3421.0
5 TraesCS5B01G266700 chr5D 95.820 957 34 4 3772 4727 377988166 377989117 0.000000e+00 1541.0
6 TraesCS5B01G266700 chr5D 92.857 840 50 5 145 982 367408090 367408921 0.000000e+00 1210.0
7 TraesCS5B01G266700 chr5D 88.099 563 52 4 5428 5976 378013443 378014004 0.000000e+00 654.0
8 TraesCS5B01G266700 chr5D 82.060 563 77 16 431 981 119495655 119495105 5.460000e-125 459.0
9 TraesCS5B01G266700 chr5D 88.793 348 16 12 983 1309 377984815 377985160 7.220000e-109 405.0
10 TraesCS5B01G266700 chr5D 90.950 221 9 1 4834 5054 377989137 377989346 2.730000e-73 287.0
11 TraesCS5B01G266700 chr5D 94.495 109 6 0 1581 1689 377985230 377985338 1.030000e-37 169.0
12 TraesCS5B01G266700 chr7A 99.388 981 5 1 1 981 219858127 219859106 0.000000e+00 1777.0
13 TraesCS5B01G266700 chr7A 88.889 297 31 2 59 355 219858228 219858522 1.230000e-96 364.0
14 TraesCS5B01G266700 chr7A 83.626 171 24 4 5523 5691 617112718 617112550 2.230000e-34 158.0
15 TraesCS5B01G266700 chr2A 98.089 942 17 1 59 1000 69264891 69265831 0.000000e+00 1639.0
16 TraesCS5B01G266700 chr2A 91.706 422 32 3 1 419 69264747 69265168 3.110000e-162 582.0
17 TraesCS5B01G266700 chr2A 88.529 340 38 1 59 397 69264848 69265187 1.550000e-110 411.0
18 TraesCS5B01G266700 chr2A 95.146 103 5 0 4719 4821 268936599 268936701 4.800000e-36 163.0
19 TraesCS5B01G266700 chr1B 98.701 924 11 1 59 982 533404736 533405658 0.000000e+00 1639.0
20 TraesCS5B01G266700 chr1B 85.696 797 87 14 2599 3386 167996088 167995310 0.000000e+00 815.0
21 TraesCS5B01G266700 chr1B 88.356 584 38 13 1994 2575 167997749 167997194 0.000000e+00 675.0
22 TraesCS5B01G266700 chr1B 91.706 422 31 4 1 419 533404592 533405012 3.110000e-162 582.0
23 TraesCS5B01G266700 chr1B 87.629 485 37 11 506 982 551719595 551720064 5.270000e-150 542.0
24 TraesCS5B01G266700 chr1B 88.529 340 37 2 59 397 533404693 533405031 1.550000e-110 411.0
25 TraesCS5B01G266700 chr1B 91.603 131 10 1 1832 1962 167998129 167998000 4.760000e-41 180.0
26 TraesCS5B01G266700 chr1D 87.676 1282 105 29 1966 3236 110518887 110517648 0.000000e+00 1443.0
27 TraesCS5B01G266700 chr1D 92.167 983 52 8 1 981 345276782 345275823 0.000000e+00 1365.0
28 TraesCS5B01G266700 chr1D 94.026 837 41 5 145 980 204385896 204385068 0.000000e+00 1260.0
29 TraesCS5B01G266700 chr1D 87.949 390 43 2 3623 4011 110505588 110505202 1.970000e-124 457.0
30 TraesCS5B01G266700 chr1D 90.840 131 11 1 1832 1962 110519234 110519105 2.220000e-39 174.0
31 TraesCS5B01G266700 chr1D 81.959 194 19 6 4517 4706 110504748 110504567 3.740000e-32 150.0
32 TraesCS5B01G266700 chr2D 92.976 840 49 5 145 982 602692934 602692103 0.000000e+00 1216.0
33 TraesCS5B01G266700 chr2D 97.959 98 2 0 4724 4821 468096944 468096847 2.870000e-38 171.0
34 TraesCS5B01G266700 chr2D 94.340 106 6 0 4725 4830 522707124 522707229 4.800000e-36 163.0
35 TraesCS5B01G266700 chr5A 83.208 1328 147 51 3181 4465 478818912 478820206 0.000000e+00 1147.0
36 TraesCS5B01G266700 chr5A 90.237 758 50 9 1963 2716 478817948 478818685 0.000000e+00 968.0
37 TraesCS5B01G266700 chr5A 93.066 274 16 3 1691 1962 478817449 478817721 1.210000e-106 398.0
38 TraesCS5B01G266700 chr5A 88.424 311 13 7 1019 1309 478816378 478816685 2.650000e-93 353.0
39 TraesCS5B01G266700 chr5A 89.080 174 17 2 4834 5006 478820801 478820973 1.310000e-51 215.0
40 TraesCS5B01G266700 chr5A 96.694 121 4 0 2783 2903 478818687 478818807 1.020000e-47 202.0
41 TraesCS5B01G266700 chr5A 93.548 124 6 1 4606 4729 478820662 478820783 3.680000e-42 183.0
42 TraesCS5B01G266700 chr5A 94.444 108 6 0 1581 1688 478816744 478816851 3.710000e-37 167.0
43 TraesCS5B01G266700 chr5A 94.681 94 3 2 3051 3143 478818815 478818907 1.740000e-30 145.0
44 TraesCS5B01G266700 chr1A 88.169 617 41 12 1994 2606 115367372 115366784 0.000000e+00 706.0
45 TraesCS5B01G266700 chr1A 86.023 601 64 11 2756 3351 115366802 115366217 1.420000e-175 627.0
46 TraesCS5B01G266700 chr1A 88.152 211 21 2 3624 3833 115365810 115365603 1.290000e-61 248.0
47 TraesCS5B01G266700 chr1A 81.858 226 31 5 3397 3620 115366121 115365904 1.320000e-41 182.0
48 TraesCS5B01G266700 chr1A 90.840 131 11 1 1832 1962 115367748 115367619 2.220000e-39 174.0
49 TraesCS5B01G266700 chr1A 100.000 28 0 0 5695 5722 442477997 442478024 1.100000e-02 52.8
50 TraesCS5B01G266700 chr4A 97.222 108 3 0 4722 4829 532353502 532353609 3.680000e-42 183.0
51 TraesCS5B01G266700 chr6A 97.938 97 2 0 4725 4821 23355077 23355173 1.030000e-37 169.0
52 TraesCS5B01G266700 chr3D 97.030 101 2 1 4721 4821 290583919 290583820 1.030000e-37 169.0
53 TraesCS5B01G266700 chr7B 92.373 118 8 1 4717 4833 744290678 744290795 3.710000e-37 167.0
54 TraesCS5B01G266700 chr4D 95.146 103 5 0 4722 4824 298543569 298543467 4.800000e-36 163.0
55 TraesCS5B01G266700 chr4D 84.426 122 13 5 5578 5697 152919550 152919433 1.360000e-21 115.0
56 TraesCS5B01G266700 chr4B 96.000 100 4 0 4726 4825 216814998 216815097 4.800000e-36 163.0
57 TraesCS5B01G266700 chr3B 88.550 131 14 1 5562 5691 373889316 373889186 2.230000e-34 158.0
58 TraesCS5B01G266700 chr6B 85.470 117 16 1 5573 5688 571742620 571742736 2.930000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G266700 chr5B 451178273 451184255 5982 False 3634.333333 8135 95.973000 1 5983 3 chr5B.!!$F1 5982
1 TraesCS5B01G266700 chr5B 679576785 679577368 583 True 403.000000 403 79.734000 5120 5703 1 chr5B.!!$R1 583
2 TraesCS5B01G266700 chr5D 367408090 367408921 831 False 1210.000000 1210 92.857000 145 982 1 chr5D.!!$F1 837
3 TraesCS5B01G266700 chr5D 377984815 377989346 4531 False 1164.600000 3421 93.291800 983 5054 5 chr5D.!!$F3 4071
4 TraesCS5B01G266700 chr5D 378013443 378014004 561 False 654.000000 654 88.099000 5428 5976 1 chr5D.!!$F2 548
5 TraesCS5B01G266700 chr5D 119495105 119495655 550 True 459.000000 459 82.060000 431 981 1 chr5D.!!$R1 550
6 TraesCS5B01G266700 chr7A 219858127 219859106 979 False 1070.500000 1777 94.138500 1 981 2 chr7A.!!$F1 980
7 TraesCS5B01G266700 chr2A 69264747 69265831 1084 False 877.333333 1639 92.774667 1 1000 3 chr2A.!!$F2 999
8 TraesCS5B01G266700 chr1B 533404592 533405658 1066 False 877.333333 1639 92.978667 1 982 3 chr1B.!!$F2 981
9 TraesCS5B01G266700 chr1B 167995310 167998129 2819 True 556.666667 815 88.551667 1832 3386 3 chr1B.!!$R1 1554
10 TraesCS5B01G266700 chr1D 345275823 345276782 959 True 1365.000000 1365 92.167000 1 981 1 chr1D.!!$R2 980
11 TraesCS5B01G266700 chr1D 204385068 204385896 828 True 1260.000000 1260 94.026000 145 980 1 chr1D.!!$R1 835
12 TraesCS5B01G266700 chr1D 110517648 110519234 1586 True 808.500000 1443 89.258000 1832 3236 2 chr1D.!!$R4 1404
13 TraesCS5B01G266700 chr1D 110504567 110505588 1021 True 303.500000 457 84.954000 3623 4706 2 chr1D.!!$R3 1083
14 TraesCS5B01G266700 chr2D 602692103 602692934 831 True 1216.000000 1216 92.976000 145 982 1 chr2D.!!$R2 837
15 TraesCS5B01G266700 chr5A 478816378 478820973 4595 False 419.777778 1147 91.486889 1019 5006 9 chr5A.!!$F1 3987
16 TraesCS5B01G266700 chr1A 115365603 115367748 2145 True 387.400000 706 87.008400 1832 3833 5 chr1A.!!$R1 2001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.036105 GGAAGCAAAATTGGGGCTGG 60.036 55.000 0.17 0.0 38.04 4.85 F
128 129 0.240945 CAGCAAAAATCGAAGGCGGT 59.759 50.000 0.00 0.0 38.28 5.68 F
803 980 0.252479 CATGTGGCTGAGAGGCTTCT 59.748 55.000 0.00 0.0 41.96 2.85 F
1009 1193 0.396835 AGAGTCCCCCGCTTAGTACC 60.397 60.000 0.00 0.0 0.00 3.34 F
1175 1379 1.446272 CTCGGTTCCTCTGGTTCGC 60.446 63.158 0.00 0.0 0.00 4.70 F
2241 3305 1.627834 GCTGGCTATAAGCTCCCTCAT 59.372 52.381 0.00 0.0 41.99 2.90 F
3169 5404 1.608109 TGCTGTTTTCATGTGCATCGT 59.392 42.857 0.00 0.0 0.00 3.73 F
4738 7678 0.105039 CCATGCTACTCCCTCCGTTC 59.895 60.000 0.00 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 2700 0.605589 CTCACTTCTTCGTGCCCTCT 59.394 55.000 0.00 0.00 34.92 3.69 R
2020 3079 7.683704 GCAGCATTCATGATCTTTGTATCCTTT 60.684 37.037 0.00 0.00 0.00 3.11 R
2492 3557 0.181114 GCACACCATAGGCCATCAGA 59.819 55.000 5.01 0.00 0.00 3.27 R
2734 4897 5.112686 GCCTGTACCAAACATCAAAACAAA 58.887 37.500 0.00 0.00 37.50 2.83 R
3169 5404 5.335348 GCAAGTAAATTGACGGCCTAAAGAA 60.335 40.000 0.00 0.00 41.83 2.52 R
3565 5862 3.270877 AGCAGCATAAAAGGTTCTACCG 58.729 45.455 0.00 0.00 44.90 4.02 R
4803 7743 0.109723 CCACTCCCTCCGTTCCAAAA 59.890 55.000 0.00 0.00 0.00 2.44 R
5797 8767 0.329596 GGACACAAGATCTTGGCCCT 59.670 55.000 33.11 14.33 44.45 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 3.568538 CTGGTTCCAGCAAAAATCGAAG 58.431 45.455 5.89 0.00 0.00 3.79
81 82 2.295909 TGGTTCCAGCAAAAATCGAAGG 59.704 45.455 0.00 0.00 0.00 3.46
82 83 2.328473 GTTCCAGCAAAAATCGAAGGC 58.672 47.619 0.00 0.00 0.00 4.35
83 84 0.521291 TCCAGCAAAAATCGAAGGCG 59.479 50.000 0.00 0.00 39.35 5.52
84 85 0.456653 CCAGCAAAAATCGAAGGCGG 60.457 55.000 0.00 0.00 38.28 6.13
85 86 0.240945 CAGCAAAAATCGAAGGCGGT 59.759 50.000 0.00 0.00 38.28 5.68
86 87 0.240945 AGCAAAAATCGAAGGCGGTG 59.759 50.000 0.00 0.00 38.28 4.94
87 88 0.732538 GCAAAAATCGAAGGCGGTGG 60.733 55.000 0.00 0.00 38.28 4.61
88 89 0.878416 CAAAAATCGAAGGCGGTGGA 59.122 50.000 0.00 0.00 38.28 4.02
89 90 1.268352 CAAAAATCGAAGGCGGTGGAA 59.732 47.619 0.00 0.00 38.28 3.53
90 91 1.165270 AAAATCGAAGGCGGTGGAAG 58.835 50.000 0.00 0.00 38.28 3.46
91 92 1.305930 AAATCGAAGGCGGTGGAAGC 61.306 55.000 0.00 0.00 38.28 3.86
92 93 2.463589 AATCGAAGGCGGTGGAAGCA 62.464 55.000 0.00 0.00 38.28 3.91
93 94 2.463589 ATCGAAGGCGGTGGAAGCAA 62.464 55.000 0.00 0.00 38.28 3.91
94 95 2.258013 CGAAGGCGGTGGAAGCAAA 61.258 57.895 0.00 0.00 36.08 3.68
95 96 1.791103 CGAAGGCGGTGGAAGCAAAA 61.791 55.000 0.00 0.00 36.08 2.44
96 97 0.603065 GAAGGCGGTGGAAGCAAAAT 59.397 50.000 0.00 0.00 36.08 1.82
97 98 1.000843 GAAGGCGGTGGAAGCAAAATT 59.999 47.619 0.00 0.00 36.08 1.82
98 99 0.318120 AGGCGGTGGAAGCAAAATTG 59.682 50.000 0.00 0.00 36.08 2.32
99 100 0.670239 GGCGGTGGAAGCAAAATTGG 60.670 55.000 0.00 0.00 36.08 3.16
100 101 0.670239 GCGGTGGAAGCAAAATTGGG 60.670 55.000 0.00 0.00 34.19 4.12
101 102 0.037419 CGGTGGAAGCAAAATTGGGG 60.037 55.000 0.00 0.00 0.00 4.96
102 103 0.321564 GGTGGAAGCAAAATTGGGGC 60.322 55.000 0.00 0.00 0.00 5.80
103 104 0.686789 GTGGAAGCAAAATTGGGGCT 59.313 50.000 0.00 0.00 40.14 5.19
104 105 0.686224 TGGAAGCAAAATTGGGGCTG 59.314 50.000 0.17 0.00 38.04 4.85
105 106 0.036105 GGAAGCAAAATTGGGGCTGG 60.036 55.000 0.17 0.00 38.04 4.85
106 107 0.686789 GAAGCAAAATTGGGGCTGGT 59.313 50.000 0.17 0.00 38.04 4.00
107 108 1.072173 GAAGCAAAATTGGGGCTGGTT 59.928 47.619 0.17 0.00 38.04 3.67
108 109 0.686789 AGCAAAATTGGGGCTGGTTC 59.313 50.000 0.00 0.00 36.34 3.62
109 110 0.321564 GCAAAATTGGGGCTGGTTCC 60.322 55.000 0.00 0.00 0.00 3.62
110 111 1.055040 CAAAATTGGGGCTGGTTCCA 58.945 50.000 0.00 0.00 0.00 3.53
111 112 1.002315 CAAAATTGGGGCTGGTTCCAG 59.998 52.381 13.88 13.88 34.17 3.86
122 123 3.641437 CTGGTTCCAGCAAAAATCGAA 57.359 42.857 5.89 0.00 0.00 3.71
123 124 3.568538 CTGGTTCCAGCAAAAATCGAAG 58.431 45.455 5.89 0.00 0.00 3.79
124 125 2.295909 TGGTTCCAGCAAAAATCGAAGG 59.704 45.455 0.00 0.00 0.00 3.46
125 126 2.328473 GTTCCAGCAAAAATCGAAGGC 58.672 47.619 0.00 0.00 0.00 4.35
126 127 0.521291 TCCAGCAAAAATCGAAGGCG 59.479 50.000 0.00 0.00 39.35 5.52
127 128 0.456653 CCAGCAAAAATCGAAGGCGG 60.457 55.000 0.00 0.00 38.28 6.13
128 129 0.240945 CAGCAAAAATCGAAGGCGGT 59.759 50.000 0.00 0.00 38.28 5.68
129 130 0.240945 AGCAAAAATCGAAGGCGGTG 59.759 50.000 0.00 0.00 38.28 4.94
130 131 0.732538 GCAAAAATCGAAGGCGGTGG 60.733 55.000 0.00 0.00 38.28 4.61
131 132 0.878416 CAAAAATCGAAGGCGGTGGA 59.122 50.000 0.00 0.00 38.28 4.02
132 133 1.268352 CAAAAATCGAAGGCGGTGGAA 59.732 47.619 0.00 0.00 38.28 3.53
133 134 1.165270 AAAATCGAAGGCGGTGGAAG 58.835 50.000 0.00 0.00 38.28 3.46
134 135 1.305930 AAATCGAAGGCGGTGGAAGC 61.306 55.000 0.00 0.00 38.28 3.86
135 136 2.463589 AATCGAAGGCGGTGGAAGCA 62.464 55.000 0.00 0.00 38.28 3.91
136 137 2.463589 ATCGAAGGCGGTGGAAGCAA 62.464 55.000 0.00 0.00 38.28 3.91
137 138 2.258013 CGAAGGCGGTGGAAGCAAA 61.258 57.895 0.00 0.00 36.08 3.68
138 139 1.791103 CGAAGGCGGTGGAAGCAAAA 61.791 55.000 0.00 0.00 36.08 2.44
139 140 0.603065 GAAGGCGGTGGAAGCAAAAT 59.397 50.000 0.00 0.00 36.08 1.82
140 141 1.000843 GAAGGCGGTGGAAGCAAAATT 59.999 47.619 0.00 0.00 36.08 1.82
141 142 0.318120 AGGCGGTGGAAGCAAAATTG 59.682 50.000 0.00 0.00 36.08 2.32
142 143 0.670239 GGCGGTGGAAGCAAAATTGG 60.670 55.000 0.00 0.00 36.08 3.16
143 144 0.670239 GCGGTGGAAGCAAAATTGGG 60.670 55.000 0.00 0.00 34.19 4.12
299 472 1.227999 CCAGCAAAACTCGAAGCCGA 61.228 55.000 0.00 0.00 43.35 5.54
803 980 0.252479 CATGTGGCTGAGAGGCTTCT 59.748 55.000 0.00 0.00 41.96 2.85
982 1166 1.562575 CCGGTCAGAAACGTTTCCCG 61.563 60.000 32.58 32.58 38.44 5.14
985 1169 1.941975 GGTCAGAAACGTTTCCCGAAA 59.058 47.619 31.87 14.02 40.70 3.46
986 1170 2.355444 GGTCAGAAACGTTTCCCGAAAA 59.645 45.455 31.87 12.46 40.70 2.29
1009 1193 0.396835 AGAGTCCCCCGCTTAGTACC 60.397 60.000 0.00 0.00 0.00 3.34
1112 1303 4.075793 CCCTCCCGACTCCTCCCA 62.076 72.222 0.00 0.00 0.00 4.37
1114 1305 2.360980 CTCCCGACTCCTCCCACT 59.639 66.667 0.00 0.00 0.00 4.00
1125 1329 1.860240 TCCTCCCACTGGCTCTACTAT 59.140 52.381 0.00 0.00 0.00 2.12
1175 1379 1.446272 CTCGGTTCCTCTGGTTCGC 60.446 63.158 0.00 0.00 0.00 4.70
1229 1433 4.036380 CCTCGTTTGATATTAGGGGTTTGC 59.964 45.833 0.00 0.00 0.00 3.68
1653 1864 1.748493 TGTTCTTTTGCTTTGCCTCGT 59.252 42.857 0.00 0.00 0.00 4.18
1675 1886 2.760634 TGTAATCGCAGGCAAAGAGA 57.239 45.000 0.00 0.00 0.00 3.10
1820 2629 5.680229 CGATTCTTCATGCTTGCAGTAATTC 59.320 40.000 0.87 0.00 0.00 2.17
1827 2636 2.019984 GCTTGCAGTAATTCCAGAGGG 58.980 52.381 0.00 0.00 0.00 4.30
1934 2743 4.771054 TCTACTCTACCTCCACACCTTTTC 59.229 45.833 0.00 0.00 0.00 2.29
1935 2744 2.299297 ACTCTACCTCCACACCTTTTCG 59.701 50.000 0.00 0.00 0.00 3.46
2020 3079 8.759481 TTATGTAATGCAGGGTATCATTTGAA 57.241 30.769 0.00 0.00 34.95 2.69
2108 3167 4.111967 TCCGCATGTGAGTGGAGA 57.888 55.556 8.11 0.00 42.94 3.71
2241 3305 1.627834 GCTGGCTATAAGCTCCCTCAT 59.372 52.381 0.00 0.00 41.99 2.90
2311 3375 3.563808 TGTTCTGTTCCTTCGTTGGATTG 59.436 43.478 0.51 0.00 35.83 2.67
2329 3394 4.813697 GGATTGGAGTTTGCTAGTCTCATC 59.186 45.833 0.00 0.00 0.00 2.92
2330 3395 5.396213 GGATTGGAGTTTGCTAGTCTCATCT 60.396 44.000 0.00 0.00 0.00 2.90
2331 3396 4.727507 TGGAGTTTGCTAGTCTCATCTC 57.272 45.455 0.00 0.00 0.00 2.75
2332 3397 4.348486 TGGAGTTTGCTAGTCTCATCTCT 58.652 43.478 0.00 0.00 0.00 3.10
2333 3398 4.400884 TGGAGTTTGCTAGTCTCATCTCTC 59.599 45.833 0.00 0.00 0.00 3.20
2334 3399 4.400884 GGAGTTTGCTAGTCTCATCTCTCA 59.599 45.833 0.00 0.00 0.00 3.27
2335 3400 5.068987 GGAGTTTGCTAGTCTCATCTCTCAT 59.931 44.000 0.00 0.00 0.00 2.90
2341 3406 6.104665 TGCTAGTCTCATCTCTCATGTTTTG 58.895 40.000 0.00 0.00 0.00 2.44
2357 3422 9.206870 CTCATGTTTTGGTTTTATTATGTTGCT 57.793 29.630 0.00 0.00 0.00 3.91
2492 3557 7.339212 TGTGCATAGCTCAATAGTTGGTTATTT 59.661 33.333 0.00 0.00 0.00 1.40
2665 4828 8.704234 TGTTGATTTTTACACAACAAAGTTGAC 58.296 29.630 15.99 1.04 46.56 3.18
2675 4838 4.754618 ACAACAAAGTTGACGATATGAGCA 59.245 37.500 15.99 0.00 0.00 4.26
2728 4891 6.822170 AGATAACTGTGATATATGCTGCCATG 59.178 38.462 0.00 0.00 32.85 3.66
2734 4897 6.240145 TGTGATATATGCTGCCATGTAATGT 58.760 36.000 0.00 0.00 44.81 2.71
2955 5187 7.778382 TGGAAGGAAGGAAAACTAAATATAGCC 59.222 37.037 0.00 0.00 31.96 3.93
2963 5195 7.990886 AGGAAAACTAAATATAGCCGAATGACA 59.009 33.333 0.00 0.00 31.96 3.58
3117 5350 3.306703 CACATGTTTTGGGCGAATAATGC 59.693 43.478 0.00 0.00 0.00 3.56
3169 5404 1.608109 TGCTGTTTTCATGTGCATCGT 59.392 42.857 0.00 0.00 0.00 3.73
3197 5432 2.222953 GGCCGTCAATTTACTTGCTACG 60.223 50.000 0.00 0.00 35.79 3.51
3213 5448 2.734492 GCTACGTACACTGCCACTAAGG 60.734 54.545 0.00 0.00 41.84 2.69
3272 5507 2.351706 TGAAACTAAGGTTGCGGGTT 57.648 45.000 0.00 0.00 33.76 4.11
3275 5510 3.067040 TGAAACTAAGGTTGCGGGTTTTC 59.933 43.478 0.00 0.00 33.76 2.29
3402 5688 4.607293 ACAGCAGTCATGACTTAGACAA 57.393 40.909 25.84 0.00 40.20 3.18
3509 5806 4.162509 ACAATAGGCCACCTTCTAAGTCTC 59.837 45.833 5.01 0.00 34.61 3.36
3512 5809 2.569404 AGGCCACCTTCTAAGTCTCTTG 59.431 50.000 5.01 0.00 0.00 3.02
3565 5862 4.783450 GCTGTATCTTTAGTTCGCACATGC 60.783 45.833 0.00 0.00 37.78 4.06
3593 5890 1.396653 CTTTTATGCTGCTCCCTGGG 58.603 55.000 6.33 6.33 0.00 4.45
3616 5913 5.374071 GGGTACATCGTCCTTTCCATAAAT 58.626 41.667 0.00 0.00 0.00 1.40
3680 6067 9.665264 CCTTTTCTAACTTAGTGTTTTGCTAAG 57.335 33.333 9.67 9.67 46.43 2.18
3743 6131 3.772025 TCCAGTTTGTTTTTGATGGTGGT 59.228 39.130 0.00 0.00 0.00 4.16
3759 6147 8.746052 TGATGGTGGTATAAAACAAGGAATAG 57.254 34.615 0.00 0.00 0.00 1.73
3784 6331 9.823647 AGTACATATACTGATGGAAACTTTCTG 57.176 33.333 0.00 0.00 40.32 3.02
3856 6403 6.826668 TCTGGAAAAATGTCTGAGTTGAGTA 58.173 36.000 0.00 0.00 0.00 2.59
3885 6432 0.178767 TCTCTGACATGGCCATTCCG 59.821 55.000 17.92 13.24 37.80 4.30
4015 6563 1.805943 TGATGACTTCATGTTGTGCGG 59.194 47.619 0.00 0.00 36.57 5.69
4032 6583 1.272769 GCGGCTCGAGAAGGGTATATT 59.727 52.381 18.75 0.00 0.00 1.28
4052 6603 9.490379 GTATATTTCTATGTTAGGGGACACTTG 57.510 37.037 0.00 0.00 31.30 3.16
4066 6617 3.319689 GGACACTTGAGGATAGTAGGCTC 59.680 52.174 0.00 0.00 0.00 4.70
4108 6659 8.770438 TTTGTTTGTATCTTCAGCAAAGTTTT 57.230 26.923 0.00 0.00 36.31 2.43
4119 6670 5.747565 TCAGCAAAGTTTTCATCGTTAGTG 58.252 37.500 0.00 0.00 0.00 2.74
4120 6671 4.379793 CAGCAAAGTTTTCATCGTTAGTGC 59.620 41.667 0.00 0.00 0.00 4.40
4134 6685 9.191995 TCATCGTTAGTGCACTATATATGTTTG 57.808 33.333 26.54 17.02 0.00 2.93
4187 6739 7.602517 AAATCTTTCTTATCCGACTTGTCAG 57.397 36.000 1.59 0.00 0.00 3.51
4192 6744 1.557099 TATCCGACTTGTCAGCCACT 58.443 50.000 1.59 0.00 0.00 4.00
4291 6848 3.187700 GCTGTAGTTCATTCCTGGTACG 58.812 50.000 0.00 0.00 0.00 3.67
4293 6850 2.829720 TGTAGTTCATTCCTGGTACGCT 59.170 45.455 0.00 0.00 0.00 5.07
4346 6908 3.245514 CCTTCATATGGGATGCCTCCATT 60.246 47.826 10.44 0.00 41.87 3.16
4495 7085 7.616935 AGTTATACTAGTAAACTACCAGTGCCA 59.383 37.037 19.91 0.00 32.90 4.92
4510 7100 1.863454 GTGCCAGTATTCTGATGCTCG 59.137 52.381 0.12 0.00 43.76 5.03
4721 7661 0.179234 TGCTGACGTGAAACCTTCCA 59.821 50.000 0.00 0.00 0.00 3.53
4729 7669 2.673368 CGTGAAACCTTCCATGCTACTC 59.327 50.000 0.00 0.00 0.00 2.59
4730 7670 3.010420 GTGAAACCTTCCATGCTACTCC 58.990 50.000 0.00 0.00 0.00 3.85
4731 7671 2.026262 TGAAACCTTCCATGCTACTCCC 60.026 50.000 0.00 0.00 0.00 4.30
4733 7673 1.501582 ACCTTCCATGCTACTCCCTC 58.498 55.000 0.00 0.00 0.00 4.30
4734 7674 0.761802 CCTTCCATGCTACTCCCTCC 59.238 60.000 0.00 0.00 0.00 4.30
4735 7675 0.390860 CTTCCATGCTACTCCCTCCG 59.609 60.000 0.00 0.00 0.00 4.63
4737 7677 0.325296 TCCATGCTACTCCCTCCGTT 60.325 55.000 0.00 0.00 0.00 4.44
4738 7678 0.105039 CCATGCTACTCCCTCCGTTC 59.895 60.000 0.00 0.00 0.00 3.95
4739 7679 0.105039 CATGCTACTCCCTCCGTTCC 59.895 60.000 0.00 0.00 0.00 3.62
4741 7681 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
4742 7682 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
4743 7683 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
4744 7684 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
4745 7685 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
4746 7686 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4747 7687 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4748 7688 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4749 7689 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4750 7690 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4751 7691 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4752 7692 3.555956 CCTCCGTTCCAAAATAGATGACG 59.444 47.826 0.00 0.00 0.00 4.35
4753 7693 2.933906 TCCGTTCCAAAATAGATGACGC 59.066 45.455 0.00 0.00 0.00 5.19
4754 7694 2.675844 CCGTTCCAAAATAGATGACGCA 59.324 45.455 0.00 0.00 0.00 5.24
4755 7695 3.126171 CCGTTCCAAAATAGATGACGCAA 59.874 43.478 0.00 0.00 0.00 4.85
4756 7696 4.088648 CGTTCCAAAATAGATGACGCAAC 58.911 43.478 0.00 0.00 0.00 4.17
4757 7697 4.142902 CGTTCCAAAATAGATGACGCAACT 60.143 41.667 0.00 0.00 0.00 3.16
4758 7698 5.616866 CGTTCCAAAATAGATGACGCAACTT 60.617 40.000 0.00 0.00 0.00 2.66
4759 7699 5.957842 TCCAAAATAGATGACGCAACTTT 57.042 34.783 0.00 0.00 0.00 2.66
4760 7700 7.302524 GTTCCAAAATAGATGACGCAACTTTA 58.697 34.615 0.00 0.00 0.00 1.85
4761 7701 7.624360 TCCAAAATAGATGACGCAACTTTAT 57.376 32.000 0.00 0.00 0.00 1.40
4762 7702 8.725405 TCCAAAATAGATGACGCAACTTTATA 57.275 30.769 0.00 0.00 0.00 0.98
4763 7703 8.609176 TCCAAAATAGATGACGCAACTTTATAC 58.391 33.333 0.00 0.00 0.00 1.47
4764 7704 8.612619 CCAAAATAGATGACGCAACTTTATACT 58.387 33.333 0.00 0.00 0.00 2.12
4770 7710 8.773404 AGATGACGCAACTTTATACTAACTTT 57.227 30.769 0.00 0.00 0.00 2.66
4771 7711 9.865321 AGATGACGCAACTTTATACTAACTTTA 57.135 29.630 0.00 0.00 0.00 1.85
4773 7713 9.649167 ATGACGCAACTTTATACTAACTTTAGT 57.351 29.630 6.85 6.85 45.39 2.24
4776 7716 9.912634 ACGCAACTTTATACTAACTTTAGTACA 57.087 29.630 10.39 0.00 45.86 2.90
4809 7749 9.739276 ATACAAAGTTGAGTCATCTATTTTGGA 57.261 29.630 14.35 9.09 40.00 3.53
4810 7750 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4811 7751 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4812 7752 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4813 7753 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4814 7754 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4815 7755 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
4816 7756 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4817 7757 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4818 7758 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4819 7759 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4820 7760 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4821 7761 2.200373 ATTTTGGAACGGAGGGAGTG 57.800 50.000 0.00 0.00 0.00 3.51
4822 7762 0.109723 TTTTGGAACGGAGGGAGTGG 59.890 55.000 0.00 0.00 0.00 4.00
4823 7763 1.057851 TTTGGAACGGAGGGAGTGGT 61.058 55.000 0.00 0.00 0.00 4.16
4824 7764 0.178926 TTGGAACGGAGGGAGTGGTA 60.179 55.000 0.00 0.00 0.00 3.25
4825 7765 0.613853 TGGAACGGAGGGAGTGGTAG 60.614 60.000 0.00 0.00 0.00 3.18
4826 7766 0.614134 GGAACGGAGGGAGTGGTAGT 60.614 60.000 0.00 0.00 0.00 2.73
4827 7767 1.264295 GAACGGAGGGAGTGGTAGTT 58.736 55.000 0.00 0.00 0.00 2.24
4828 7768 2.450476 GAACGGAGGGAGTGGTAGTTA 58.550 52.381 0.00 0.00 0.00 2.24
4829 7769 2.842645 ACGGAGGGAGTGGTAGTTAT 57.157 50.000 0.00 0.00 0.00 1.89
4830 7770 3.959495 ACGGAGGGAGTGGTAGTTATA 57.041 47.619 0.00 0.00 0.00 0.98
4831 7771 4.466255 ACGGAGGGAGTGGTAGTTATAT 57.534 45.455 0.00 0.00 0.00 0.86
4832 7772 4.405548 ACGGAGGGAGTGGTAGTTATATC 58.594 47.826 0.00 0.00 0.00 1.63
4926 7866 1.597195 GATTGCGTATGATTGCACGGA 59.403 47.619 0.00 0.00 41.57 4.69
4967 7907 4.569966 CACTTGATAAGCCTGCTAGTTGAG 59.430 45.833 0.00 0.00 0.00 3.02
4988 7928 1.295423 GCTCGCCCTTGACAGGTTA 59.705 57.895 0.00 0.00 38.79 2.85
5008 7948 1.874345 CGTAGAAGGCACGGACCAGT 61.874 60.000 0.00 0.00 35.78 4.00
5009 7949 0.320697 GTAGAAGGCACGGACCAGTT 59.679 55.000 0.00 0.00 0.00 3.16
5010 7950 1.053424 TAGAAGGCACGGACCAGTTT 58.947 50.000 0.00 0.00 0.00 2.66
5011 7951 0.535102 AGAAGGCACGGACCAGTTTG 60.535 55.000 0.00 0.00 0.00 2.93
5012 7952 0.534203 GAAGGCACGGACCAGTTTGA 60.534 55.000 0.00 0.00 0.00 2.69
5013 7953 0.106918 AAGGCACGGACCAGTTTGAA 60.107 50.000 0.00 0.00 0.00 2.69
5014 7954 0.535102 AGGCACGGACCAGTTTGAAG 60.535 55.000 0.00 0.00 0.00 3.02
5015 7955 1.282875 GCACGGACCAGTTTGAAGC 59.717 57.895 0.00 0.00 0.00 3.86
5016 7956 1.569493 CACGGACCAGTTTGAAGCG 59.431 57.895 0.00 0.00 0.00 4.68
5017 7957 0.878523 CACGGACCAGTTTGAAGCGA 60.879 55.000 0.00 0.00 0.00 4.93
5018 7958 0.878961 ACGGACCAGTTTGAAGCGAC 60.879 55.000 0.00 0.00 0.00 5.19
5034 7974 1.062587 GCGACACCTTGGATCATTTCG 59.937 52.381 0.00 0.00 0.00 3.46
5049 7989 5.068234 TCATTTCGTACCGAGTGAATCTT 57.932 39.130 0.00 0.00 37.14 2.40
5054 7994 3.379057 TCGTACCGAGTGAATCTTATGCA 59.621 43.478 0.00 0.00 0.00 3.96
5055 7995 3.486108 CGTACCGAGTGAATCTTATGCAC 59.514 47.826 0.00 0.00 0.00 4.57
5056 7996 2.906354 ACCGAGTGAATCTTATGCACC 58.094 47.619 0.00 0.00 33.14 5.01
5057 7997 2.501723 ACCGAGTGAATCTTATGCACCT 59.498 45.455 0.00 0.00 33.14 4.00
5058 7998 3.126831 CCGAGTGAATCTTATGCACCTC 58.873 50.000 0.00 0.00 33.14 3.85
5059 7999 2.791560 CGAGTGAATCTTATGCACCTCG 59.208 50.000 0.00 0.00 33.14 4.63
5060 8000 2.541762 GAGTGAATCTTATGCACCTCGC 59.458 50.000 0.00 0.00 42.89 5.03
5061 8001 1.599542 GTGAATCTTATGCACCTCGCC 59.400 52.381 0.00 0.00 41.33 5.54
5062 8002 0.861837 GAATCTTATGCACCTCGCCG 59.138 55.000 0.00 0.00 41.33 6.46
5063 8003 1.160329 AATCTTATGCACCTCGCCGC 61.160 55.000 0.00 0.00 41.33 6.53
5064 8004 2.310327 ATCTTATGCACCTCGCCGCA 62.310 55.000 0.00 0.00 43.45 5.69
5065 8005 2.511373 TTATGCACCTCGCCGCAG 60.511 61.111 0.00 0.00 42.37 5.18
5092 8032 4.819761 GCGCGACCATGCTCTCCA 62.820 66.667 12.10 0.00 0.00 3.86
5093 8033 2.125552 CGCGACCATGCTCTCCAA 60.126 61.111 0.00 0.00 0.00 3.53
5094 8034 1.522355 CGCGACCATGCTCTCCAAT 60.522 57.895 0.00 0.00 0.00 3.16
5095 8035 1.091771 CGCGACCATGCTCTCCAATT 61.092 55.000 0.00 0.00 0.00 2.32
5096 8036 1.098050 GCGACCATGCTCTCCAATTT 58.902 50.000 0.00 0.00 0.00 1.82
5097 8037 1.202222 GCGACCATGCTCTCCAATTTG 60.202 52.381 0.00 0.00 0.00 2.32
5098 8038 1.402968 CGACCATGCTCTCCAATTTGG 59.597 52.381 9.28 9.28 39.43 3.28
5099 8039 1.135721 GACCATGCTCTCCAATTTGGC 59.864 52.381 10.76 0.00 37.47 4.52
5100 8040 0.462789 CCATGCTCTCCAATTTGGCC 59.537 55.000 10.76 0.00 37.47 5.36
5101 8041 1.481871 CATGCTCTCCAATTTGGCCT 58.518 50.000 10.76 0.00 37.47 5.19
5102 8042 1.829222 CATGCTCTCCAATTTGGCCTT 59.171 47.619 10.76 0.00 37.47 4.35
5103 8043 1.549203 TGCTCTCCAATTTGGCCTTC 58.451 50.000 10.76 1.32 37.47 3.46
5104 8044 0.453390 GCTCTCCAATTTGGCCTTCG 59.547 55.000 10.76 0.00 37.47 3.79
5105 8045 0.453390 CTCTCCAATTTGGCCTTCGC 59.547 55.000 10.76 0.00 37.47 4.70
5115 8055 2.892425 GCCTTCGCCTCCATGTCG 60.892 66.667 0.00 0.00 0.00 4.35
5116 8056 2.892425 CCTTCGCCTCCATGTCGC 60.892 66.667 0.00 0.00 0.00 5.19
5117 8057 2.892425 CTTCGCCTCCATGTCGCC 60.892 66.667 0.00 0.00 0.00 5.54
5118 8058 4.812476 TTCGCCTCCATGTCGCCG 62.812 66.667 0.00 0.00 0.00 6.46
5135 8075 1.151450 CGCCCTAGATTTGCCCCAT 59.849 57.895 0.00 0.00 0.00 4.00
5138 8078 1.133356 GCCCTAGATTTGCCCCATCTT 60.133 52.381 0.00 0.00 32.94 2.40
5146 8086 3.804329 GCCCCATCTTGGCCGGTA 61.804 66.667 1.90 0.00 43.33 4.02
5147 8087 2.510906 CCCCATCTTGGCCGGTAG 59.489 66.667 1.90 0.00 35.79 3.18
5198 8138 4.980805 GGACCGCCAAGTCACGCA 62.981 66.667 0.00 0.00 38.59 5.24
5270 8218 0.038618 GCCGGCCAAAATTTCGAAGT 60.039 50.000 18.11 0.00 0.00 3.01
5272 8220 1.402325 CCGGCCAAAATTTCGAAGTCC 60.402 52.381 2.24 0.00 0.00 3.85
5273 8221 1.727857 CGGCCAAAATTTCGAAGTCCG 60.728 52.381 2.24 0.46 40.25 4.79
5283 8231 2.254651 GAAGTCCGACGCGTCTGT 59.745 61.111 33.94 14.34 0.00 3.41
5286 8234 4.338539 GTCCGACGCGTCTGTGGT 62.339 66.667 33.94 0.00 0.00 4.16
5287 8235 4.337060 TCCGACGCGTCTGTGGTG 62.337 66.667 33.94 18.62 0.00 4.17
5291 8239 4.602259 ACGCGTCTGTGGTGGGTG 62.602 66.667 5.58 0.00 0.00 4.61
5301 8249 2.036256 GGTGGGTGATTGGCTGCT 59.964 61.111 0.00 0.00 0.00 4.24
5303 8251 2.036098 TGGGTGATTGGCTGCTGG 59.964 61.111 0.00 0.00 0.00 4.85
5305 8253 3.818787 GGTGATTGGCTGCTGGCG 61.819 66.667 12.46 0.00 42.94 5.69
5326 8274 2.579738 GCCGTGACTTCCTCCTCC 59.420 66.667 0.00 0.00 0.00 4.30
5329 8277 1.977544 CGTGACTTCCTCCTCCGGT 60.978 63.158 0.00 0.00 0.00 5.28
5341 8289 3.327404 TCCGGTCAAAGAGGCCCC 61.327 66.667 0.00 0.00 39.53 5.80
5389 8342 0.973496 GTTCCTCCTCTCTCCGCCTT 60.973 60.000 0.00 0.00 0.00 4.35
5396 8349 0.873743 CTCTCTCCGCCTTGAATCGC 60.874 60.000 0.00 0.00 0.00 4.58
5397 8350 1.142748 CTCTCCGCCTTGAATCGCT 59.857 57.895 0.00 0.00 0.00 4.93
5406 8359 1.003476 TTGAATCGCTGCTGCTCCA 60.003 52.632 14.03 3.40 36.97 3.86
5408 8361 2.806856 GAATCGCTGCTGCTCCACG 61.807 63.158 14.03 0.00 36.97 4.94
5409 8362 3.300934 AATCGCTGCTGCTCCACGA 62.301 57.895 14.03 5.32 36.97 4.35
5418 8371 2.267961 GCTCCACGACCCCGATTT 59.732 61.111 0.00 0.00 39.50 2.17
5421 8374 3.496131 CCACGACCCCGATTTGCG 61.496 66.667 0.00 0.00 39.50 4.85
5423 8376 4.690719 ACGACCCCGATTTGCGCA 62.691 61.111 5.66 5.66 39.11 6.09
5444 8397 3.360340 GCCACTGCTTCGCTGCTT 61.360 61.111 0.00 0.00 33.53 3.91
5445 8398 2.559840 CCACTGCTTCGCTGCTTG 59.440 61.111 0.00 0.00 0.00 4.01
5482 8435 2.035626 CCGATTTGCCACCCCTGT 59.964 61.111 0.00 0.00 0.00 4.00
5503 8456 2.066393 CCCCTCCGATGCTCCTTCA 61.066 63.158 0.00 0.00 0.00 3.02
5505 8458 0.471617 CCCTCCGATGCTCCTTCATT 59.528 55.000 0.00 0.00 0.00 2.57
5520 8473 4.483243 ATTGCCGCCCCGAATCGT 62.483 61.111 0.82 0.00 0.00 3.73
5585 8538 2.159435 GCCGCCCACTAGTTTTTACATG 60.159 50.000 0.00 0.00 0.00 3.21
5616 8569 2.489938 TCACCTATTGGAGTTGCACC 57.510 50.000 0.00 0.00 37.04 5.01
5631 8584 2.695359 TGCACCTTTACATCTCCGTTC 58.305 47.619 0.00 0.00 0.00 3.95
5643 8596 2.102578 TCTCCGTTCTGCATCATCTGA 58.897 47.619 0.00 0.00 0.00 3.27
5751 8721 1.418342 CGTATCGTGGCCGGACTTTG 61.418 60.000 9.82 0.00 33.95 2.77
5762 8732 0.384725 CGGACTTTGTTTGCTCAGCG 60.385 55.000 0.00 0.00 0.00 5.18
5766 8736 0.662619 CTTTGTTTGCTCAGCGGACA 59.337 50.000 1.01 1.01 0.00 4.02
5857 8827 6.204882 CAGATTCCCCTAAATAAAACTAGGCG 59.795 42.308 0.00 0.00 34.44 5.52
5863 8833 5.238650 CCCTAAATAAAACTAGGCGTGGATG 59.761 44.000 0.00 0.00 34.44 3.51
5885 8855 8.826710 GGATGAGAATTGTTGACGTATAAATGA 58.173 33.333 0.00 0.00 0.00 2.57
5894 8864 7.976826 TGTTGACGTATAAATGAATAACCCAC 58.023 34.615 0.00 0.00 0.00 4.61
5901 8871 9.550406 CGTATAAATGAATAACCCACCTTTCTA 57.450 33.333 0.00 0.00 0.00 2.10
5911 8881 3.012518 CCCACCTTTCTACATCAGCTTG 58.987 50.000 0.00 0.00 0.00 4.01
5913 8883 4.326826 CCACCTTTCTACATCAGCTTGAA 58.673 43.478 0.00 0.00 0.00 2.69
5914 8884 4.946157 CCACCTTTCTACATCAGCTTGAAT 59.054 41.667 0.00 0.00 0.00 2.57
5933 8903 6.477053 TGAATTTTTGGGTGAACTGATTGA 57.523 33.333 0.00 0.00 0.00 2.57
5937 8907 1.452110 TGGGTGAACTGATTGATGCG 58.548 50.000 0.00 0.00 0.00 4.73
5950 8920 3.913548 TTGATGCGTGCAGTTTACATT 57.086 38.095 0.00 0.00 0.00 2.71
5972 8942 1.982395 TCGGAACCGAGAGCCACAT 60.982 57.895 12.04 0.00 44.01 3.21
5976 8946 0.037326 GAACCGAGAGCCACATGTGA 60.037 55.000 27.46 0.00 0.00 3.58
5977 8947 0.036952 AACCGAGAGCCACATGTGAG 60.037 55.000 27.46 17.31 0.00 3.51
5978 8948 1.153489 CCGAGAGCCACATGTGAGG 60.153 63.158 27.46 12.70 0.00 3.86
5979 8949 1.153489 CGAGAGCCACATGTGAGGG 60.153 63.158 27.46 11.92 0.00 4.30
5980 8950 1.222936 GAGAGCCACATGTGAGGGG 59.777 63.158 27.46 11.53 0.00 4.79
5981 8951 2.262774 GAGAGCCACATGTGAGGGGG 62.263 65.000 27.46 11.13 0.00 5.40
5982 8952 2.204136 AGCCACATGTGAGGGGGA 60.204 61.111 27.46 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 0.670239 CCAATTTTGCTTCCACCGCC 60.670 55.000 0.00 0.00 0.00 6.13
81 82 0.670239 CCCAATTTTGCTTCCACCGC 60.670 55.000 0.00 0.00 0.00 5.68
82 83 0.037419 CCCCAATTTTGCTTCCACCG 60.037 55.000 0.00 0.00 0.00 4.94
83 84 0.321564 GCCCCAATTTTGCTTCCACC 60.322 55.000 0.00 0.00 0.00 4.61
84 85 0.686789 AGCCCCAATTTTGCTTCCAC 59.313 50.000 0.00 0.00 29.17 4.02
85 86 0.686224 CAGCCCCAATTTTGCTTCCA 59.314 50.000 0.00 0.00 31.77 3.53
86 87 0.036105 CCAGCCCCAATTTTGCTTCC 60.036 55.000 0.00 0.00 31.77 3.46
87 88 0.686789 ACCAGCCCCAATTTTGCTTC 59.313 50.000 0.00 0.00 31.77 3.86
88 89 1.072173 GAACCAGCCCCAATTTTGCTT 59.928 47.619 0.00 0.00 31.77 3.91
89 90 0.686789 GAACCAGCCCCAATTTTGCT 59.313 50.000 0.00 0.00 35.25 3.91
90 91 0.321564 GGAACCAGCCCCAATTTTGC 60.322 55.000 0.00 0.00 0.00 3.68
91 92 1.002315 CTGGAACCAGCCCCAATTTTG 59.998 52.381 7.95 0.00 37.24 2.44
92 93 1.351076 CTGGAACCAGCCCCAATTTT 58.649 50.000 7.95 0.00 37.24 1.82
93 94 3.071671 CTGGAACCAGCCCCAATTT 57.928 52.632 7.95 0.00 37.24 1.82
94 95 4.872293 CTGGAACCAGCCCCAATT 57.128 55.556 7.95 0.00 37.24 2.32
102 103 3.568538 CTTCGATTTTTGCTGGAACCAG 58.431 45.455 15.64 15.64 46.15 4.00
103 104 2.295909 CCTTCGATTTTTGCTGGAACCA 59.704 45.455 0.00 0.00 0.00 3.67
104 105 2.926586 GCCTTCGATTTTTGCTGGAACC 60.927 50.000 0.00 0.00 0.00 3.62
105 106 2.328473 GCCTTCGATTTTTGCTGGAAC 58.672 47.619 0.00 0.00 0.00 3.62
106 107 1.068610 CGCCTTCGATTTTTGCTGGAA 60.069 47.619 0.00 0.00 38.10 3.53
107 108 0.521291 CGCCTTCGATTTTTGCTGGA 59.479 50.000 0.00 0.00 38.10 3.86
108 109 0.456653 CCGCCTTCGATTTTTGCTGG 60.457 55.000 0.00 0.00 38.10 4.85
109 110 0.240945 ACCGCCTTCGATTTTTGCTG 59.759 50.000 0.00 0.00 38.10 4.41
110 111 0.240945 CACCGCCTTCGATTTTTGCT 59.759 50.000 0.00 0.00 38.10 3.91
111 112 0.732538 CCACCGCCTTCGATTTTTGC 60.733 55.000 0.00 0.00 38.10 3.68
112 113 0.878416 TCCACCGCCTTCGATTTTTG 59.122 50.000 0.00 0.00 38.10 2.44
113 114 1.539827 CTTCCACCGCCTTCGATTTTT 59.460 47.619 0.00 0.00 38.10 1.94
114 115 1.165270 CTTCCACCGCCTTCGATTTT 58.835 50.000 0.00 0.00 38.10 1.82
115 116 1.305930 GCTTCCACCGCCTTCGATTT 61.306 55.000 0.00 0.00 38.10 2.17
116 117 1.745489 GCTTCCACCGCCTTCGATT 60.745 57.895 0.00 0.00 38.10 3.34
117 118 2.125106 GCTTCCACCGCCTTCGAT 60.125 61.111 0.00 0.00 38.10 3.59
118 119 2.668185 TTTGCTTCCACCGCCTTCGA 62.668 55.000 0.00 0.00 38.10 3.71
119 120 1.791103 TTTTGCTTCCACCGCCTTCG 61.791 55.000 0.00 0.00 0.00 3.79
120 121 0.603065 ATTTTGCTTCCACCGCCTTC 59.397 50.000 0.00 0.00 0.00 3.46
121 122 1.047801 AATTTTGCTTCCACCGCCTT 58.952 45.000 0.00 0.00 0.00 4.35
122 123 0.318120 CAATTTTGCTTCCACCGCCT 59.682 50.000 0.00 0.00 0.00 5.52
123 124 0.670239 CCAATTTTGCTTCCACCGCC 60.670 55.000 0.00 0.00 0.00 6.13
124 125 0.670239 CCCAATTTTGCTTCCACCGC 60.670 55.000 0.00 0.00 0.00 5.68
125 126 0.037419 CCCCAATTTTGCTTCCACCG 60.037 55.000 0.00 0.00 0.00 4.94
126 127 0.321564 GCCCCAATTTTGCTTCCACC 60.322 55.000 0.00 0.00 0.00 4.61
127 128 0.686789 AGCCCCAATTTTGCTTCCAC 59.313 50.000 0.00 0.00 29.17 4.02
128 129 0.686224 CAGCCCCAATTTTGCTTCCA 59.314 50.000 0.00 0.00 31.77 3.53
129 130 0.036105 CCAGCCCCAATTTTGCTTCC 60.036 55.000 0.00 0.00 31.77 3.46
130 131 0.686789 ACCAGCCCCAATTTTGCTTC 59.313 50.000 0.00 0.00 31.77 3.86
131 132 1.072173 GAACCAGCCCCAATTTTGCTT 59.928 47.619 0.00 0.00 31.77 3.91
132 133 0.686789 GAACCAGCCCCAATTTTGCT 59.313 50.000 0.00 0.00 35.25 3.91
133 134 0.321564 GGAACCAGCCCCAATTTTGC 60.322 55.000 0.00 0.00 0.00 3.68
134 135 1.002315 CTGGAACCAGCCCCAATTTTG 59.998 52.381 7.95 0.00 37.24 2.44
135 136 1.351076 CTGGAACCAGCCCCAATTTT 58.649 50.000 7.95 0.00 37.24 1.82
136 137 3.071671 CTGGAACCAGCCCCAATTT 57.928 52.632 7.95 0.00 37.24 1.82
137 138 4.872293 CTGGAACCAGCCCCAATT 57.128 55.556 7.95 0.00 37.24 2.32
213 386 3.070015 ACCAGTCCCAATTTTGCTTTCAG 59.930 43.478 0.00 0.00 0.00 3.02
299 472 1.279846 CAGCCCCAATTTTGCTTCCAT 59.720 47.619 0.00 0.00 31.77 3.41
803 980 4.335874 CCCTTATCTCGTTCTTTCTCTCGA 59.664 45.833 0.00 0.00 0.00 4.04
986 1170 1.703513 ACTAAGCGGGGGACTCTTTTT 59.296 47.619 0.00 0.00 0.00 1.94
992 1176 0.974525 GTGGTACTAAGCGGGGGACT 60.975 60.000 0.00 0.00 0.00 3.85
993 1177 0.974525 AGTGGTACTAAGCGGGGGAC 60.975 60.000 0.00 0.00 0.00 4.46
994 1178 0.685458 GAGTGGTACTAAGCGGGGGA 60.685 60.000 0.00 0.00 0.00 4.81
999 1183 3.946558 AGGTTAGAGAGTGGTACTAAGCG 59.053 47.826 0.00 0.00 44.17 4.68
1000 1184 5.918426 AAGGTTAGAGAGTGGTACTAAGC 57.082 43.478 0.00 0.00 41.70 3.09
1001 1185 6.458070 GCGTAAGGTTAGAGAGTGGTACTAAG 60.458 46.154 0.00 0.00 38.28 2.18
1002 1186 5.355350 GCGTAAGGTTAGAGAGTGGTACTAA 59.645 44.000 0.00 0.00 38.28 2.24
1009 1193 3.152261 CCTGCGTAAGGTTAGAGAGTG 57.848 52.381 0.00 0.00 41.74 3.51
1029 1213 2.174319 GGAAGACGATGAAGGCGGC 61.174 63.158 0.00 0.00 36.94 6.53
1112 1303 4.278669 CCACGTCATTATAGTAGAGCCAGT 59.721 45.833 0.00 0.00 0.00 4.00
1114 1305 4.466827 TCCACGTCATTATAGTAGAGCCA 58.533 43.478 0.00 0.00 0.00 4.75
1152 1356 4.148825 CAGAGGAACCGAGGCCCG 62.149 72.222 0.00 2.20 38.18 6.13
1578 1789 6.313164 GCTGACTTAACAGGAACATTAGGTAC 59.687 42.308 0.00 0.00 38.22 3.34
1579 1790 6.403878 GCTGACTTAACAGGAACATTAGGTA 58.596 40.000 0.00 0.00 38.22 3.08
1585 1796 3.788227 TGGCTGACTTAACAGGAACAT 57.212 42.857 0.00 0.00 38.22 2.71
1653 1864 4.765273 TCTCTTTGCCTGCGATTACATAA 58.235 39.130 0.00 0.00 0.00 1.90
1689 1900 9.415544 ACAAGCATCAAATCAGATCTTTAAAAC 57.584 29.630 0.00 0.00 0.00 2.43
1820 2629 2.445654 GGCTCCTCCTCCCTCTGG 60.446 72.222 0.00 0.00 0.00 3.86
1827 2636 0.687354 TCAACACTTGGCTCCTCCTC 59.313 55.000 0.00 0.00 35.26 3.71
1891 2700 0.605589 CTCACTTCTTCGTGCCCTCT 59.394 55.000 0.00 0.00 34.92 3.69
1934 2743 9.393249 TGAAGTATTTTCTAGAAAAATGTTGCG 57.607 29.630 29.22 0.00 42.71 4.85
2020 3079 7.683704 GCAGCATTCATGATCTTTGTATCCTTT 60.684 37.037 0.00 0.00 0.00 3.11
2241 3305 4.536090 ACAATGATCTTGTACTGAAGGGGA 59.464 41.667 8.28 0.00 0.00 4.81
2311 3375 4.400884 TGAGAGATGAGACTAGCAAACTCC 59.599 45.833 0.00 0.00 0.00 3.85
2330 3395 9.202273 GCAACATAATAAAACCAAAACATGAGA 57.798 29.630 0.00 0.00 0.00 3.27
2331 3396 9.206870 AGCAACATAATAAAACCAAAACATGAG 57.793 29.630 0.00 0.00 0.00 2.90
2357 3422 4.505566 GGATTGGCTTGCAGTATGGATCTA 60.506 45.833 0.00 0.00 35.22 1.98
2492 3557 0.181114 GCACACCATAGGCCATCAGA 59.819 55.000 5.01 0.00 0.00 3.27
2728 4891 9.088512 TGTACCAAACATCAAAACAAACATTAC 57.911 29.630 0.00 0.00 31.43 1.89
2734 4897 5.112686 GCCTGTACCAAACATCAAAACAAA 58.887 37.500 0.00 0.00 37.50 2.83
3117 5350 8.008513 TGTATAGGAAGCTTAGTGTAAAGGAG 57.991 38.462 0.00 0.00 0.00 3.69
3169 5404 5.335348 GCAAGTAAATTGACGGCCTAAAGAA 60.335 40.000 0.00 0.00 41.83 2.52
3197 5432 7.625828 AATTTTATCCTTAGTGGCAGTGTAC 57.374 36.000 4.76 0.00 35.26 2.90
3272 5507 7.610580 ACCAAAGTATTCAGGGAATTTGAAA 57.389 32.000 0.00 0.00 38.01 2.69
3275 5510 5.639082 GCAACCAAAGTATTCAGGGAATTTG 59.361 40.000 0.00 0.00 33.95 2.32
3382 5652 4.564041 ACTTGTCTAAGTCATGACTGCTG 58.436 43.478 28.52 19.78 43.53 4.41
3402 5688 9.635520 CAGAAGCAATTTTCAATAATTCTGACT 57.364 29.630 5.85 0.00 43.08 3.41
3435 5721 8.082242 AGTACTGGCAATGAAAGAATTTGTAAC 58.918 33.333 0.00 0.00 39.27 2.50
3565 5862 3.270877 AGCAGCATAAAAGGTTCTACCG 58.729 45.455 0.00 0.00 44.90 4.02
3566 5863 3.628032 GGAGCAGCATAAAAGGTTCTACC 59.372 47.826 0.00 0.00 38.99 3.18
3593 5890 4.411256 TTATGGAAAGGACGATGTACCC 57.589 45.455 0.00 0.00 0.00 3.69
3759 6147 9.817809 TCAGAAAGTTTCCATCAGTATATGTAC 57.182 33.333 12.05 0.00 0.00 2.90
3784 6331 9.590088 CGGTTCTACAAAACTAACAGTAATTTC 57.410 33.333 0.00 0.00 0.00 2.17
3856 6403 5.189736 TGGCCATGTCAGAGACTATTAAAGT 59.810 40.000 0.00 0.00 42.80 2.66
3885 6432 4.733405 GTGACAACTGTTTGGATCGAAAAC 59.267 41.667 4.31 9.60 37.00 2.43
4015 6563 6.926313 ACATAGAAATATACCCTTCTCGAGC 58.074 40.000 7.81 0.00 33.89 5.03
4032 6583 4.469945 CCTCAAGTGTCCCCTAACATAGAA 59.530 45.833 0.00 0.00 0.00 2.10
4052 6603 3.413327 TCACATCGAGCCTACTATCCTC 58.587 50.000 0.00 0.00 0.00 3.71
4066 6617 4.164822 ACAAAAGGAGCAAATCACATCG 57.835 40.909 0.00 0.00 0.00 3.84
4108 6659 9.191995 CAAACATATATAGTGCACTAACGATGA 57.808 33.333 31.51 15.81 31.39 2.92
4119 6670 6.603237 TGTCAGTGCAAACATATATAGTGC 57.397 37.500 0.00 7.26 35.75 4.40
4120 6671 7.128331 GCTTGTCAGTGCAAACATATATAGTG 58.872 38.462 0.00 0.00 0.00 2.74
4134 6685 6.863126 ACATATAAAGTTTTGCTTGTCAGTGC 59.137 34.615 0.00 0.00 37.52 4.40
4187 6739 5.161358 GCCTTATTCTGTGTTAAAAGTGGC 58.839 41.667 0.00 0.00 0.00 5.01
4192 6744 5.141182 TGTGGGCCTTATTCTGTGTTAAAA 58.859 37.500 4.53 0.00 0.00 1.52
4291 6848 3.804325 GCTTCCCTTCACAAAGAAAAAGC 59.196 43.478 0.00 0.00 38.26 3.51
4293 6850 5.358922 CATGCTTCCCTTCACAAAGAAAAA 58.641 37.500 0.00 0.00 35.40 1.94
4346 6908 9.418045 GAATTTCTAAATCCAAATCCAACGAAA 57.582 29.630 0.00 0.00 0.00 3.46
4421 7011 1.637553 ACCCAAGAGATGTCAGGCAAT 59.362 47.619 0.00 0.00 0.00 3.56
4476 7066 4.803098 ACTGGCACTGGTAGTTTACTAG 57.197 45.455 0.00 0.00 42.30 2.57
4477 7067 6.666546 AGAATACTGGCACTGGTAGTTTACTA 59.333 38.462 0.00 0.00 0.00 1.82
4478 7068 5.484290 AGAATACTGGCACTGGTAGTTTACT 59.516 40.000 0.00 0.00 0.00 2.24
4495 7085 4.095932 TGTCGTAACGAGCATCAGAATACT 59.904 41.667 0.00 0.00 36.23 2.12
4510 7100 1.993370 GATGGCTGACACTGTCGTAAC 59.007 52.381 4.71 0.00 34.95 2.50
4576 7510 5.363939 TCGTAATGTGTTCATATGCATCCA 58.636 37.500 0.19 0.00 33.49 3.41
4721 7661 0.325296 TGGAACGGAGGGAGTAGCAT 60.325 55.000 0.00 0.00 0.00 3.79
4729 7669 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4730 7670 3.555956 CGTCATCTATTTTGGAACGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
4731 7671 3.001330 GCGTCATCTATTTTGGAACGGAG 59.999 47.826 0.00 0.00 0.00 4.63
4733 7673 2.675844 TGCGTCATCTATTTTGGAACGG 59.324 45.455 0.00 0.00 0.00 4.44
4734 7674 4.088648 GTTGCGTCATCTATTTTGGAACG 58.911 43.478 0.00 0.00 0.00 3.95
4735 7675 5.296813 AGTTGCGTCATCTATTTTGGAAC 57.703 39.130 0.00 0.00 0.00 3.62
4737 7677 5.957842 AAAGTTGCGTCATCTATTTTGGA 57.042 34.783 0.00 0.00 0.00 3.53
4738 7678 8.612619 AGTATAAAGTTGCGTCATCTATTTTGG 58.387 33.333 0.00 0.00 0.00 3.28
4744 7684 9.865321 AAAGTTAGTATAAAGTTGCGTCATCTA 57.135 29.630 0.00 0.00 0.00 1.98
4745 7685 8.773404 AAAGTTAGTATAAAGTTGCGTCATCT 57.227 30.769 0.00 0.00 0.00 2.90
4747 7687 9.649167 ACTAAAGTTAGTATAAAGTTGCGTCAT 57.351 29.630 1.81 0.00 41.92 3.06
4750 7690 9.912634 TGTACTAAAGTTAGTATAAAGTTGCGT 57.087 29.630 12.78 0.00 45.11 5.24
4783 7723 9.739276 TCCAAAATAGATGACTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
4784 7724 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4785 7725 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4786 7726 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
4787 7727 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4788 7728 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4789 7729 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4790 7730 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4791 7731 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4792 7732 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4793 7733 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4794 7734 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4795 7735 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4796 7736 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4797 7737 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4798 7738 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4799 7739 3.055385 CACTCCCTCCGTTCCAAAATAGA 60.055 47.826 0.00 0.00 0.00 1.98
4800 7740 3.270877 CACTCCCTCCGTTCCAAAATAG 58.729 50.000 0.00 0.00 0.00 1.73
4801 7741 2.026636 CCACTCCCTCCGTTCCAAAATA 60.027 50.000 0.00 0.00 0.00 1.40
4802 7742 1.271926 CCACTCCCTCCGTTCCAAAAT 60.272 52.381 0.00 0.00 0.00 1.82
4803 7743 0.109723 CCACTCCCTCCGTTCCAAAA 59.890 55.000 0.00 0.00 0.00 2.44
4804 7744 1.057851 ACCACTCCCTCCGTTCCAAA 61.058 55.000 0.00 0.00 0.00 3.28
4805 7745 0.178926 TACCACTCCCTCCGTTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
4806 7746 0.613853 CTACCACTCCCTCCGTTCCA 60.614 60.000 0.00 0.00 0.00 3.53
4807 7747 0.614134 ACTACCACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 0.00 3.62
4808 7748 1.264295 AACTACCACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
4809 7749 2.610438 TAACTACCACTCCCTCCGTT 57.390 50.000 0.00 0.00 0.00 4.44
4810 7750 2.842645 ATAACTACCACTCCCTCCGT 57.157 50.000 0.00 0.00 0.00 4.69
4811 7751 3.439476 CGATATAACTACCACTCCCTCCG 59.561 52.174 0.00 0.00 0.00 4.63
4812 7752 4.660168 TCGATATAACTACCACTCCCTCC 58.340 47.826 0.00 0.00 0.00 4.30
4813 7753 5.769162 AGTTCGATATAACTACCACTCCCTC 59.231 44.000 0.00 0.00 37.93 4.30
4814 7754 5.535406 CAGTTCGATATAACTACCACTCCCT 59.465 44.000 0.00 0.00 37.61 4.20
4815 7755 5.770417 CAGTTCGATATAACTACCACTCCC 58.230 45.833 0.00 0.00 37.61 4.30
4816 7756 5.221130 GCAGTTCGATATAACTACCACTCC 58.779 45.833 0.00 0.00 37.61 3.85
4817 7757 4.910456 CGCAGTTCGATATAACTACCACTC 59.090 45.833 0.00 0.00 37.61 3.51
4818 7758 4.261489 CCGCAGTTCGATATAACTACCACT 60.261 45.833 0.00 0.00 37.61 4.00
4819 7759 3.979495 CCGCAGTTCGATATAACTACCAC 59.021 47.826 0.00 0.00 37.61 4.16
4820 7760 3.633525 ACCGCAGTTCGATATAACTACCA 59.366 43.478 0.00 0.00 37.61 3.25
4821 7761 4.234530 ACCGCAGTTCGATATAACTACC 57.765 45.455 0.00 0.00 37.61 3.18
4822 7762 6.233430 TCTACCGCAGTTCGATATAACTAC 57.767 41.667 0.00 0.00 37.61 2.73
4823 7763 6.866010 TTCTACCGCAGTTCGATATAACTA 57.134 37.500 0.00 0.00 37.61 2.24
4824 7764 5.762825 TTCTACCGCAGTTCGATATAACT 57.237 39.130 0.00 0.00 40.33 2.24
4825 7765 6.817270 TTTTCTACCGCAGTTCGATATAAC 57.183 37.500 0.00 0.00 41.67 1.89
4866 7806 3.698289 ACGAGTTCAGAGGACCATCTAA 58.302 45.455 0.00 0.00 0.00 2.10
4868 7808 2.223803 ACGAGTTCAGAGGACCATCT 57.776 50.000 0.00 0.00 0.00 2.90
4873 7813 3.083293 AGGTTCTACGAGTTCAGAGGAC 58.917 50.000 0.00 0.00 0.00 3.85
4967 7907 2.328099 CCTGTCAAGGGCGAGCAAC 61.328 63.158 0.00 0.00 40.27 4.17
4988 7928 1.874345 CTGGTCCGTGCCTTCTACGT 61.874 60.000 0.00 0.00 39.76 3.57
5008 7948 2.151202 GATCCAAGGTGTCGCTTCAAA 58.849 47.619 0.00 0.00 0.00 2.69
5009 7949 1.071542 TGATCCAAGGTGTCGCTTCAA 59.928 47.619 0.00 0.00 0.00 2.69
5010 7950 0.684535 TGATCCAAGGTGTCGCTTCA 59.315 50.000 0.00 0.00 0.00 3.02
5011 7951 2.029838 ATGATCCAAGGTGTCGCTTC 57.970 50.000 0.00 0.00 0.00 3.86
5012 7952 2.496899 AATGATCCAAGGTGTCGCTT 57.503 45.000 0.00 0.00 0.00 4.68
5013 7953 2.359900 GAAATGATCCAAGGTGTCGCT 58.640 47.619 0.00 0.00 0.00 4.93
5014 7954 1.062587 CGAAATGATCCAAGGTGTCGC 59.937 52.381 0.00 0.00 0.00 5.19
5015 7955 2.346803 ACGAAATGATCCAAGGTGTCG 58.653 47.619 0.00 0.00 0.00 4.35
5016 7956 3.621715 GGTACGAAATGATCCAAGGTGTC 59.378 47.826 0.00 0.00 0.00 3.67
5017 7957 3.606687 GGTACGAAATGATCCAAGGTGT 58.393 45.455 0.00 0.00 0.00 4.16
5034 7974 3.802685 GGTGCATAAGATTCACTCGGTAC 59.197 47.826 0.00 0.00 0.00 3.34
5075 8015 4.819761 TGGAGAGCATGGTCGCGC 62.820 66.667 20.07 14.15 36.85 6.86
5076 8016 1.091771 AATTGGAGAGCATGGTCGCG 61.092 55.000 20.07 0.00 36.85 5.87
5077 8017 1.098050 AAATTGGAGAGCATGGTCGC 58.902 50.000 18.91 18.91 0.00 5.19
5078 8018 1.402968 CCAAATTGGAGAGCATGGTCG 59.597 52.381 18.64 2.53 40.96 4.79
5079 8019 1.135721 GCCAAATTGGAGAGCATGGTC 59.864 52.381 17.47 17.19 40.96 4.02
5080 8020 1.188863 GCCAAATTGGAGAGCATGGT 58.811 50.000 17.47 0.00 40.96 3.55
5081 8021 0.462789 GGCCAAATTGGAGAGCATGG 59.537 55.000 17.47 0.00 40.96 3.66
5082 8022 1.481871 AGGCCAAATTGGAGAGCATG 58.518 50.000 17.47 0.00 40.96 4.06
5083 8023 2.105766 GAAGGCCAAATTGGAGAGCAT 58.894 47.619 17.47 0.00 40.96 3.79
5084 8024 1.549203 GAAGGCCAAATTGGAGAGCA 58.451 50.000 17.47 0.00 40.96 4.26
5085 8025 0.453390 CGAAGGCCAAATTGGAGAGC 59.547 55.000 17.47 0.00 40.96 4.09
5086 8026 0.453390 GCGAAGGCCAAATTGGAGAG 59.547 55.000 17.47 2.83 40.96 3.20
5087 8027 2.566824 GCGAAGGCCAAATTGGAGA 58.433 52.632 17.47 0.00 40.96 3.71
5106 8046 3.506059 CTAGGGCGGCGACATGGAG 62.506 68.421 17.61 0.00 0.00 3.86
5107 8047 3.536917 CTAGGGCGGCGACATGGA 61.537 66.667 17.61 0.00 0.00 3.41
5108 8048 2.383245 AATCTAGGGCGGCGACATGG 62.383 60.000 17.61 10.71 0.00 3.66
5109 8049 0.532862 AAATCTAGGGCGGCGACATG 60.533 55.000 17.61 3.40 0.00 3.21
5110 8050 0.532862 CAAATCTAGGGCGGCGACAT 60.533 55.000 17.61 11.40 0.00 3.06
5111 8051 1.153449 CAAATCTAGGGCGGCGACA 60.153 57.895 17.61 0.00 0.00 4.35
5112 8052 2.534903 GCAAATCTAGGGCGGCGAC 61.535 63.158 12.98 8.16 0.00 5.19
5113 8053 2.203015 GCAAATCTAGGGCGGCGA 60.203 61.111 12.98 0.00 0.00 5.54
5114 8054 3.279875 GGCAAATCTAGGGCGGCG 61.280 66.667 0.51 0.51 0.00 6.46
5115 8055 2.907407 GGGCAAATCTAGGGCGGC 60.907 66.667 0.00 0.00 0.00 6.53
5116 8056 2.203351 GGGGCAAATCTAGGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
5117 8057 0.890996 GATGGGGCAAATCTAGGGCG 60.891 60.000 0.00 0.00 0.00 6.13
5118 8058 0.480252 AGATGGGGCAAATCTAGGGC 59.520 55.000 0.00 0.00 32.54 5.19
5157 8097 0.739112 CTTCTTCGCAGACAGCTCCC 60.739 60.000 0.00 0.00 42.61 4.30
5168 8108 3.491652 GGTCCGCTGCTTCTTCGC 61.492 66.667 0.00 0.00 0.00 4.70
5183 8123 4.235762 ACTGCGTGACTTGGCGGT 62.236 61.111 0.00 0.00 43.61 5.68
5198 8138 4.379243 CCGCTTCACGCCTCCACT 62.379 66.667 0.00 0.00 41.76 4.00
5249 8193 2.479412 TTCGAAATTTTGGCCGGCGG 62.479 55.000 24.35 24.35 0.00 6.13
5270 8218 4.337060 CACCACAGACGCGTCGGA 62.337 66.667 39.12 0.00 34.09 4.55
5273 8221 4.295119 ACCCACCACAGACGCGTC 62.295 66.667 31.30 31.30 0.00 5.19
5279 8227 1.074775 GCCAATCACCCACCACAGA 59.925 57.895 0.00 0.00 0.00 3.41
5280 8228 1.075482 AGCCAATCACCCACCACAG 59.925 57.895 0.00 0.00 0.00 3.66
5283 8231 2.283101 GCAGCCAATCACCCACCA 60.283 61.111 0.00 0.00 0.00 4.17
5286 8234 2.036098 CCAGCAGCCAATCACCCA 59.964 61.111 0.00 0.00 0.00 4.51
5287 8235 3.455469 GCCAGCAGCCAATCACCC 61.455 66.667 0.00 0.00 34.35 4.61
5341 8289 4.410400 GGCAACGGAGGTGGAGGG 62.410 72.222 0.00 0.00 0.00 4.30
5362 8310 1.726533 GAGAGGAGGAACGGCGTAGG 61.727 65.000 15.20 0.00 0.00 3.18
5396 8349 4.767255 GGGGTCGTGGAGCAGCAG 62.767 72.222 0.00 0.00 0.00 4.24
5406 8359 4.690719 TGCGCAAATCGGGGTCGT 62.691 61.111 8.16 0.00 38.94 4.34
5408 8361 2.178273 GTTGCGCAAATCGGGGTC 59.822 61.111 26.87 5.81 38.94 4.46
5409 8362 3.370231 GGTTGCGCAAATCGGGGT 61.370 61.111 26.87 0.00 38.94 4.95
5414 8367 2.804931 GTGGCGGTTGCGCAAATC 60.805 61.111 26.87 18.62 44.10 2.17
5443 8396 4.049640 GCGGTGGCGCAAATCCAA 62.050 61.111 10.83 0.00 35.01 3.53
5445 8398 4.481112 CTGCGGTGGCGCAAATCC 62.481 66.667 10.83 4.45 44.65 3.01
5464 8417 2.755469 CAGGGGTGGCAAATCGGG 60.755 66.667 0.00 0.00 0.00 5.14
5503 8456 4.483243 ACGATTCGGGGCGGCAAT 62.483 61.111 12.47 1.30 0.00 3.56
5585 8538 5.964758 TCCAATAGGTGATGCAAAATGAAC 58.035 37.500 0.00 0.00 35.89 3.18
5616 8569 4.183865 TGATGCAGAACGGAGATGTAAAG 58.816 43.478 0.00 0.00 0.00 1.85
5643 8596 1.550869 CCAAGAAAGGGGCAACTCCAT 60.551 52.381 0.00 0.00 38.59 3.41
5704 8660 8.725148 ACAGTCTGTTAAGAGCATTTTCAATAG 58.275 33.333 0.00 0.00 31.37 1.73
5705 8661 8.621532 ACAGTCTGTTAAGAGCATTTTCAATA 57.378 30.769 0.00 0.00 31.37 1.90
5707 8663 6.942532 ACAGTCTGTTAAGAGCATTTTCAA 57.057 33.333 0.00 0.00 31.37 2.69
5709 8665 6.074005 CGAACAGTCTGTTAAGAGCATTTTC 58.926 40.000 18.17 0.91 41.28 2.29
5710 8666 5.527582 ACGAACAGTCTGTTAAGAGCATTTT 59.472 36.000 18.17 0.00 41.28 1.82
5751 8721 0.375106 GCTATGTCCGCTGAGCAAAC 59.625 55.000 4.88 1.91 34.96 2.93
5762 8732 3.264897 CACGCCTGCGCTATGTCC 61.265 66.667 9.73 0.00 44.19 4.02
5766 8736 3.664025 TTGCTCACGCCTGCGCTAT 62.664 57.895 9.73 0.00 44.19 2.97
5791 8761 2.440980 GATCTTGGCCCTGGCACC 60.441 66.667 10.86 0.64 44.11 5.01
5797 8767 0.329596 GGACACAAGATCTTGGCCCT 59.670 55.000 33.11 14.33 44.45 5.19
5857 8827 7.534085 TTATACGTCAACAATTCTCATCCAC 57.466 36.000 0.00 0.00 0.00 4.02
5885 8855 5.044846 AGCTGATGTAGAAAGGTGGGTTATT 60.045 40.000 0.00 0.00 0.00 1.40
5887 8857 3.844211 AGCTGATGTAGAAAGGTGGGTTA 59.156 43.478 0.00 0.00 0.00 2.85
5889 8859 2.269940 AGCTGATGTAGAAAGGTGGGT 58.730 47.619 0.00 0.00 0.00 4.51
5894 8864 7.330208 CCAAAAATTCAAGCTGATGTAGAAAGG 59.670 37.037 0.00 0.00 0.00 3.11
5901 8871 4.344679 TCACCCAAAAATTCAAGCTGATGT 59.655 37.500 0.00 0.00 0.00 3.06
5911 8881 6.128472 GCATCAATCAGTTCACCCAAAAATTC 60.128 38.462 0.00 0.00 0.00 2.17
5913 8883 5.240121 GCATCAATCAGTTCACCCAAAAAT 58.760 37.500 0.00 0.00 0.00 1.82
5914 8884 4.630111 GCATCAATCAGTTCACCCAAAAA 58.370 39.130 0.00 0.00 0.00 1.94
5933 8903 4.494035 CGATACAATGTAAACTGCACGCAT 60.494 41.667 0.00 0.00 0.00 4.73
5937 8907 5.321516 GTTCCGATACAATGTAAACTGCAC 58.678 41.667 0.00 0.00 0.00 4.57
5950 8920 0.681887 TGGCTCTCGGTTCCGATACA 60.682 55.000 14.34 8.40 37.83 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.