Multiple sequence alignment - TraesCS5B01G266400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G266400 chr5B 100.000 2742 0 0 1 2742 450839775 450837034 0.000000e+00 5064.0
1 TraesCS5B01G266400 chr5B 97.059 34 1 0 2707 2740 391088183 391088150 1.060000e-04 58.4
2 TraesCS5B01G266400 chr5D 92.870 1136 43 24 400 1513 377531623 377530504 0.000000e+00 1615.0
3 TraesCS5B01G266400 chr5D 89.732 448 34 8 1995 2434 377530304 377529861 1.840000e-156 562.0
4 TraesCS5B01G266400 chr5D 92.386 197 14 1 1691 1887 377530489 377530294 2.080000e-71 279.0
5 TraesCS5B01G266400 chr5D 91.061 179 11 1 162 340 377531963 377531790 1.270000e-58 237.0
6 TraesCS5B01G266400 chr5D 89.412 170 12 2 1526 1689 25040145 25039976 2.770000e-50 209.0
7 TraesCS5B01G266400 chr5D 89.349 169 13 2 1522 1685 388330731 388330563 9.950000e-50 207.0
8 TraesCS5B01G266400 chr5D 96.970 66 2 0 327 392 377531766 377531701 8.030000e-21 111.0
9 TraesCS5B01G266400 chr5A 90.346 1243 60 24 162 1385 478319836 478318635 0.000000e+00 1576.0
10 TraesCS5B01G266400 chr5A 89.073 723 57 11 1995 2710 478314664 478313957 0.000000e+00 878.0
11 TraesCS5B01G266400 chr5A 83.696 92 15 0 2619 2710 29636464 29636555 1.350000e-13 87.9
12 TraesCS5B01G266400 chr1B 92.683 164 8 4 1 161 14952898 14953060 1.640000e-57 233.0
13 TraesCS5B01G266400 chr1B 92.683 164 8 4 1 161 14994662 14994824 1.640000e-57 233.0
14 TraesCS5B01G266400 chr1B 100.000 30 0 0 2707 2736 473588324 473588295 3.810000e-04 56.5
15 TraesCS5B01G266400 chr3D 92.169 166 9 4 1 163 100466142 100465978 5.910000e-57 231.0
16 TraesCS5B01G266400 chr3D 90.196 102 10 0 1891 1992 256985622 256985723 1.710000e-27 134.0
17 TraesCS5B01G266400 chr1A 92.169 166 10 3 1 163 582559500 582559665 5.910000e-57 231.0
18 TraesCS5B01G266400 chr1A 89.820 167 11 3 1525 1685 287765216 287765382 2.770000e-50 209.0
19 TraesCS5B01G266400 chr1A 92.593 108 6 2 1887 1992 506269552 506269445 1.310000e-33 154.0
20 TraesCS5B01G266400 chr6B 91.617 167 11 3 1 164 33072799 33072965 7.640000e-56 228.0
21 TraesCS5B01G266400 chrUn 91.124 169 12 3 1 166 255618800 255618632 2.750000e-55 226.0
22 TraesCS5B01G266400 chrUn 91.566 166 11 3 1 163 347383979 347384144 2.750000e-55 226.0
23 TraesCS5B01G266400 chrUn 91.566 166 11 3 1 163 404982515 404982680 2.750000e-55 226.0
24 TraesCS5B01G266400 chr2D 91.617 167 9 5 1 163 591983029 591983194 2.750000e-55 226.0
25 TraesCS5B01G266400 chr2D 90.654 107 8 2 1887 1992 20424528 20424633 1.020000e-29 141.0
26 TraesCS5B01G266400 chr2B 90.909 165 8 2 1527 1685 671212206 671212043 5.950000e-52 215.0
27 TraesCS5B01G266400 chr2B 93.458 107 6 1 1887 1992 788493041 788492935 1.020000e-34 158.0
28 TraesCS5B01G266400 chr2B 91.589 107 6 2 1887 1992 306906454 306906350 7.910000e-31 145.0
29 TraesCS5B01G266400 chr2B 85.057 87 13 0 2617 2703 694990097 694990183 3.760000e-14 89.8
30 TraesCS5B01G266400 chr3A 89.205 176 11 3 1519 1688 611185135 611185308 2.140000e-51 213.0
31 TraesCS5B01G266400 chr3A 87.778 180 15 4 1515 1688 663260593 663260771 1.290000e-48 204.0
32 TraesCS5B01G266400 chr4B 89.017 173 12 5 1527 1693 166701426 166701597 9.950000e-50 207.0
33 TraesCS5B01G266400 chr4B 92.661 109 8 0 1884 1992 57172347 57172239 1.020000e-34 158.0
34 TraesCS5B01G266400 chr7A 89.349 169 11 4 1523 1685 66151576 66151409 3.580000e-49 206.0
35 TraesCS5B01G266400 chr6D 85.787 197 17 7 1499 1685 315624205 315624010 5.990000e-47 198.0
36 TraesCS5B01G266400 chr2A 90.654 107 10 0 1886 1992 236829133 236829239 2.850000e-30 143.0
37 TraesCS5B01G266400 chr1D 90.826 109 4 5 1886 1992 132214395 132214499 1.020000e-29 141.0
38 TraesCS5B01G266400 chr1D 92.308 65 5 0 2639 2703 323917115 323917179 2.910000e-15 93.5
39 TraesCS5B01G266400 chr7D 89.623 106 10 1 1887 1992 64438261 64438157 1.710000e-27 134.0
40 TraesCS5B01G266400 chr7B 97.059 34 1 0 2707 2740 135410488 135410455 1.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G266400 chr5B 450837034 450839775 2741 True 5064.0 5064 100.0000 1 2742 1 chr5B.!!$R2 2741
1 TraesCS5B01G266400 chr5D 377529861 377531963 2102 True 560.8 1615 92.6038 162 2434 5 chr5D.!!$R3 2272
2 TraesCS5B01G266400 chr5A 478313957 478319836 5879 True 1227.0 1576 89.7095 162 2710 2 chr5A.!!$R1 2548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 698 0.167470 CGAATGTGAGCAACAGCCTG 59.833 55.0 0.0 0.0 43.64 4.85 F
582 701 0.179009 ATGTGAGCAACAGCCTGTGT 60.179 50.0 0.0 0.0 43.64 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 3031 0.042131 TCCCATGTACTCCCTCCGTT 59.958 55.0 0.00 0.0 0.00 4.44 R
1900 5677 0.105607 AGAGACCGGGGGTATTCCTC 60.106 60.0 6.32 0.0 35.25 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.543783 GACTAGAAAAAGTCTCTAAAAAGTCCA 57.456 33.333 0.00 0.00 42.21 4.02
48 49 9.508642 AGAAAAAGTCTCTAAAAAGTCCATAGG 57.491 33.333 0.00 0.00 0.00 2.57
49 50 9.503399 GAAAAAGTCTCTAAAAAGTCCATAGGA 57.497 33.333 0.00 0.00 0.00 2.94
50 51 9.862149 AAAAAGTCTCTAAAAAGTCCATAGGAA 57.138 29.630 0.00 0.00 31.38 3.36
52 53 9.674068 AAAGTCTCTAAAAAGTCCATAGGAATC 57.326 33.333 0.00 0.00 31.38 2.52
53 54 8.380742 AGTCTCTAAAAAGTCCATAGGAATCA 57.619 34.615 0.00 0.00 31.38 2.57
54 55 8.826765 AGTCTCTAAAAAGTCCATAGGAATCAA 58.173 33.333 0.00 0.00 31.38 2.57
55 56 9.449719 GTCTCTAAAAAGTCCATAGGAATCAAA 57.550 33.333 0.00 0.00 31.38 2.69
56 57 9.449719 TCTCTAAAAAGTCCATAGGAATCAAAC 57.550 33.333 0.00 0.00 31.38 2.93
57 58 8.263940 TCTAAAAAGTCCATAGGAATCAAACG 57.736 34.615 0.00 0.00 31.38 3.60
58 59 5.897377 AAAAGTCCATAGGAATCAAACGG 57.103 39.130 0.00 0.00 31.38 4.44
59 60 4.837093 AAGTCCATAGGAATCAAACGGA 57.163 40.909 0.00 0.00 31.38 4.69
60 61 4.837093 AGTCCATAGGAATCAAACGGAA 57.163 40.909 0.00 0.00 31.38 4.30
61 62 4.770795 AGTCCATAGGAATCAAACGGAAG 58.229 43.478 0.00 0.00 31.38 3.46
62 63 3.877508 GTCCATAGGAATCAAACGGAAGG 59.122 47.826 0.00 0.00 31.38 3.46
63 64 3.118038 TCCATAGGAATCAAACGGAAGGG 60.118 47.826 0.00 0.00 0.00 3.95
64 65 3.118038 CCATAGGAATCAAACGGAAGGGA 60.118 47.826 0.00 0.00 0.00 4.20
65 66 2.491675 AGGAATCAAACGGAAGGGAC 57.508 50.000 0.00 0.00 0.00 4.46
84 85 7.569599 AGGGACTTTTTCTACAGGATTAGAA 57.430 36.000 0.00 0.00 33.39 2.10
85 86 7.985589 AGGGACTTTTTCTACAGGATTAGAAA 58.014 34.615 1.96 1.96 43.34 2.52
96 97 9.756571 TCTACAGGATTAGAAAAAGACTCTACT 57.243 33.333 0.00 0.00 0.00 2.57
97 98 9.796120 CTACAGGATTAGAAAAAGACTCTACTG 57.204 37.037 0.00 0.00 0.00 2.74
98 99 8.423906 ACAGGATTAGAAAAAGACTCTACTGA 57.576 34.615 0.00 0.00 0.00 3.41
99 100 8.871125 ACAGGATTAGAAAAAGACTCTACTGAA 58.129 33.333 0.00 0.00 0.00 3.02
100 101 9.364989 CAGGATTAGAAAAAGACTCTACTGAAG 57.635 37.037 0.00 0.00 0.00 3.02
101 102 9.315363 AGGATTAGAAAAAGACTCTACTGAAGA 57.685 33.333 0.00 0.00 0.00 2.87
158 159 8.624701 GTCCTAGGACTTTTAAACAAAACAAC 57.375 34.615 31.12 1.86 41.57 3.32
159 160 7.703621 GTCCTAGGACTTTTAAACAAAACAACC 59.296 37.037 31.12 0.93 41.57 3.77
160 161 6.982141 CCTAGGACTTTTAAACAAAACAACCC 59.018 38.462 1.05 0.00 0.00 4.11
203 204 2.874086 TGTCAGCTGTCATTGTCTTGTG 59.126 45.455 14.67 0.00 0.00 3.33
206 207 2.031420 CAGCTGTCATTGTCTTGTGTGG 60.031 50.000 5.25 0.00 0.00 4.17
207 208 1.949525 GCTGTCATTGTCTTGTGTGGT 59.050 47.619 0.00 0.00 0.00 4.16
208 209 3.138304 GCTGTCATTGTCTTGTGTGGTA 58.862 45.455 0.00 0.00 0.00 3.25
209 210 3.058914 GCTGTCATTGTCTTGTGTGGTAC 60.059 47.826 0.00 0.00 0.00 3.34
210 211 4.126437 CTGTCATTGTCTTGTGTGGTACA 58.874 43.478 0.00 0.00 37.56 2.90
271 272 3.494332 AGTCGTTAACCACTAGACCAGT 58.506 45.455 3.85 0.00 38.32 4.00
311 312 5.490139 AATGTTGCAGTATTGATTCTCCG 57.510 39.130 0.00 0.00 0.00 4.63
318 319 5.647658 TGCAGTATTGATTCTCCGATGTTTT 59.352 36.000 0.00 0.00 0.00 2.43
325 326 3.780804 TTCTCCGATGTTTTCCCTTGA 57.219 42.857 0.00 0.00 0.00 3.02
358 396 2.747989 CCAGCATTAGCATATCAGGCTG 59.252 50.000 8.58 8.58 45.49 4.85
360 398 3.436015 CAGCATTAGCATATCAGGCTGTC 59.564 47.826 15.27 0.29 45.49 3.51
418 526 2.202987 GCCATGACAGCCTCTCGG 60.203 66.667 0.00 0.00 0.00 4.63
531 650 6.919115 GGAAATTTCCTTGTAAACAAAGCGTA 59.081 34.615 26.94 0.00 44.11 4.42
578 697 0.957395 CCGAATGTGAGCAACAGCCT 60.957 55.000 0.00 0.00 43.64 4.58
579 698 0.167470 CGAATGTGAGCAACAGCCTG 59.833 55.000 0.00 0.00 43.64 4.85
580 699 1.242076 GAATGTGAGCAACAGCCTGT 58.758 50.000 0.00 0.00 43.64 4.00
581 700 0.956633 AATGTGAGCAACAGCCTGTG 59.043 50.000 0.00 0.00 43.64 3.66
582 701 0.179009 ATGTGAGCAACAGCCTGTGT 60.179 50.000 0.00 0.00 43.64 3.72
832 959 4.922026 AACGACACACCCCCGCAC 62.922 66.667 0.00 0.00 0.00 5.34
920 1047 4.572571 TCCAACGCCACCACCACC 62.573 66.667 0.00 0.00 0.00 4.61
932 1063 0.552363 CCACCACCCATCATCATCCA 59.448 55.000 0.00 0.00 0.00 3.41
934 1065 2.425247 CCACCACCCATCATCATCCATT 60.425 50.000 0.00 0.00 0.00 3.16
942 1073 3.487372 CATCATCATCCATTGCTCCTGT 58.513 45.455 0.00 0.00 0.00 4.00
1218 1349 2.025727 GGATGCGGGTACGACTCG 59.974 66.667 0.00 0.00 46.68 4.18
1221 1352 2.672651 TGCGGGTACGACTCGGAA 60.673 61.111 2.98 0.00 40.16 4.30
1222 1353 2.267351 TGCGGGTACGACTCGGAAA 61.267 57.895 2.98 0.00 40.16 3.13
1240 1371 4.500568 GCTACGCGCGCAACTTCC 62.501 66.667 32.58 9.80 0.00 3.46
1354 1485 4.095483 CCCTCCAGTGATTCATTCTTTTCG 59.905 45.833 0.00 0.00 0.00 3.46
1457 2813 6.079424 TGTTTGTAGTTTGTAAATCAGGCC 57.921 37.500 0.00 0.00 0.00 5.19
1477 2833 3.500680 GCCCGCGGAATTGAATAAATCTA 59.499 43.478 30.73 0.00 0.00 1.98
1519 2878 7.891183 TTTTGAGTTCGTTTGAAAATTGGAA 57.109 28.000 0.00 0.00 35.46 3.53
1520 2879 6.879188 TTGAGTTCGTTTGAAAATTGGAAC 57.121 33.333 8.23 8.23 35.46 3.62
1521 2880 5.031578 TGAGTTCGTTTGAAAATTGGAACG 58.968 37.500 0.00 0.00 44.35 3.95
1527 2886 7.135089 TCGTTTGAAAATTGGAACGATGATA 57.865 32.000 11.88 0.00 45.93 2.15
1528 2887 7.018826 TCGTTTGAAAATTGGAACGATGATAC 58.981 34.615 11.88 0.00 45.93 2.24
1529 2888 7.021196 CGTTTGAAAATTGGAACGATGATACT 58.979 34.615 9.08 0.00 45.44 2.12
1530 2889 8.172484 CGTTTGAAAATTGGAACGATGATACTA 58.828 33.333 9.08 0.00 45.44 1.82
1531 2890 9.274065 GTTTGAAAATTGGAACGATGATACTAC 57.726 33.333 0.00 0.00 0.00 2.73
1532 2891 7.548196 TGAAAATTGGAACGATGATACTACC 57.452 36.000 0.00 0.00 0.00 3.18
1533 2892 7.335627 TGAAAATTGGAACGATGATACTACCT 58.664 34.615 0.00 0.00 0.00 3.08
1534 2893 7.494625 TGAAAATTGGAACGATGATACTACCTC 59.505 37.037 0.00 0.00 0.00 3.85
1535 2894 4.931661 TTGGAACGATGATACTACCTCC 57.068 45.455 0.00 0.00 0.00 4.30
1536 2895 2.882761 TGGAACGATGATACTACCTCCG 59.117 50.000 0.00 0.00 0.00 4.63
1537 2896 2.883386 GGAACGATGATACTACCTCCGT 59.117 50.000 0.00 0.00 0.00 4.69
1538 2897 3.317430 GGAACGATGATACTACCTCCGTT 59.683 47.826 0.00 0.00 40.72 4.44
1539 2898 4.535116 GAACGATGATACTACCTCCGTTC 58.465 47.826 0.00 0.00 44.36 3.95
1540 2899 2.883386 ACGATGATACTACCTCCGTTCC 59.117 50.000 0.00 0.00 0.00 3.62
1541 2900 3.147629 CGATGATACTACCTCCGTTCCT 58.852 50.000 0.00 0.00 0.00 3.36
1542 2901 4.202398 ACGATGATACTACCTCCGTTCCTA 60.202 45.833 0.00 0.00 0.00 2.94
1543 2902 4.758674 CGATGATACTACCTCCGTTCCTAA 59.241 45.833 0.00 0.00 0.00 2.69
1544 2903 5.240183 CGATGATACTACCTCCGTTCCTAAA 59.760 44.000 0.00 0.00 0.00 1.85
1545 2904 6.072064 CGATGATACTACCTCCGTTCCTAAAT 60.072 42.308 0.00 0.00 0.00 1.40
1546 2905 7.120285 CGATGATACTACCTCCGTTCCTAAATA 59.880 40.741 0.00 0.00 0.00 1.40
1547 2906 8.896722 ATGATACTACCTCCGTTCCTAAATAT 57.103 34.615 0.00 0.00 0.00 1.28
1548 2907 8.716674 TGATACTACCTCCGTTCCTAAATATT 57.283 34.615 0.00 0.00 0.00 1.28
1549 2908 9.151177 TGATACTACCTCCGTTCCTAAATATTT 57.849 33.333 5.89 5.89 0.00 1.40
1550 2909 9.420551 GATACTACCTCCGTTCCTAAATATTTG 57.579 37.037 11.05 1.40 0.00 2.32
1551 2910 7.191593 ACTACCTCCGTTCCTAAATATTTGT 57.808 36.000 11.05 0.00 0.00 2.83
1552 2911 7.270779 ACTACCTCCGTTCCTAAATATTTGTC 58.729 38.462 11.05 0.00 0.00 3.18
1553 2912 6.309389 ACCTCCGTTCCTAAATATTTGTCT 57.691 37.500 11.05 0.00 0.00 3.41
1554 2913 6.718294 ACCTCCGTTCCTAAATATTTGTCTT 58.282 36.000 11.05 0.00 0.00 3.01
1555 2914 7.173032 ACCTCCGTTCCTAAATATTTGTCTTT 58.827 34.615 11.05 0.00 0.00 2.52
1556 2915 7.668469 ACCTCCGTTCCTAAATATTTGTCTTTT 59.332 33.333 11.05 0.00 0.00 2.27
1557 2916 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
1594 2953 7.770366 TGGACTACCACATACGAATGTATAT 57.230 36.000 0.00 0.00 44.70 0.86
1595 2954 8.866970 TGGACTACCACATACGAATGTATATA 57.133 34.615 0.00 0.00 44.70 0.86
1596 2955 8.953313 TGGACTACCACATACGAATGTATATAG 58.047 37.037 0.00 0.00 44.70 1.31
1597 2956 7.914346 GGACTACCACATACGAATGTATATAGC 59.086 40.741 0.00 0.00 44.70 2.97
1598 2957 8.577048 ACTACCACATACGAATGTATATAGCT 57.423 34.615 0.00 0.00 44.70 3.32
1599 2958 9.676861 ACTACCACATACGAATGTATATAGCTA 57.323 33.333 0.00 0.00 44.70 3.32
1633 2992 8.425577 AATGTAGATTCACTCATTTTACTCCG 57.574 34.615 0.00 0.00 0.00 4.63
1634 2993 6.931838 TGTAGATTCACTCATTTTACTCCGT 58.068 36.000 0.00 0.00 0.00 4.69
1635 2994 8.058667 TGTAGATTCACTCATTTTACTCCGTA 57.941 34.615 0.00 0.00 0.00 4.02
1636 2995 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
1637 2996 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
1638 2997 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
1639 2998 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
1640 2999 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
1641 3000 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
1642 3001 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
1643 3002 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
1644 3003 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
1645 3004 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
1646 3005 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
1647 3006 8.959548 TCATTTTACTCCGTATGTAGTCACTTA 58.040 33.333 0.00 0.00 0.00 2.24
1648 3007 9.745880 CATTTTACTCCGTATGTAGTCACTTAT 57.254 33.333 0.00 0.00 0.00 1.73
1679 3038 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1680 3039 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1681 3040 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1682 3041 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1683 3042 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1684 3043 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1685 3044 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
1686 3045 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
1687 3046 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
1688 3047 1.486211 AGGAACGGAGGGAGTACATG 58.514 55.000 0.00 0.00 0.00 3.21
1689 3048 0.464452 GGAACGGAGGGAGTACATGG 59.536 60.000 0.00 0.00 0.00 3.66
1690 3049 0.464452 GAACGGAGGGAGTACATGGG 59.536 60.000 0.00 0.00 0.00 4.00
1691 3050 0.042131 AACGGAGGGAGTACATGGGA 59.958 55.000 0.00 0.00 0.00 4.37
1692 3051 0.042131 ACGGAGGGAGTACATGGGAA 59.958 55.000 0.00 0.00 0.00 3.97
1693 3052 0.753262 CGGAGGGAGTACATGGGAAG 59.247 60.000 0.00 0.00 0.00 3.46
1694 3053 1.688311 CGGAGGGAGTACATGGGAAGA 60.688 57.143 0.00 0.00 0.00 2.87
1695 3054 2.043227 GGAGGGAGTACATGGGAAGAG 58.957 57.143 0.00 0.00 0.00 2.85
1703 3062 5.280521 GGAGTACATGGGAAGAGAAAAAGGA 60.281 44.000 0.00 0.00 0.00 3.36
1708 3067 4.086706 TGGGAAGAGAAAAAGGACAGAC 57.913 45.455 0.00 0.00 0.00 3.51
1712 3071 5.066593 GGAAGAGAAAAAGGACAGACATGT 58.933 41.667 0.00 0.00 44.31 3.21
1725 3084 1.464608 AGACATGTCGAATGTTTGGCG 59.535 47.619 19.85 0.00 31.52 5.69
1749 4812 5.388111 CAAATTATGATATGGCACGAGCAG 58.612 41.667 7.26 0.00 44.61 4.24
1773 4836 5.948992 AAGCTATCTCAAAACCTGTCAAC 57.051 39.130 0.00 0.00 0.00 3.18
1775 4838 5.376625 AGCTATCTCAAAACCTGTCAACAA 58.623 37.500 0.00 0.00 0.00 2.83
1887 5664 4.953579 TGTGGTTACTTTCAAAAGGAGCTT 59.046 37.500 7.37 0.00 40.31 3.74
1888 5665 5.420739 TGTGGTTACTTTCAAAAGGAGCTTT 59.579 36.000 7.37 0.00 40.31 3.51
1889 5666 5.977725 GTGGTTACTTTCAAAAGGAGCTTTC 59.022 40.000 7.37 0.00 40.31 2.62
1890 5667 5.891551 TGGTTACTTTCAAAAGGAGCTTTCT 59.108 36.000 7.37 0.00 40.31 2.52
1891 5668 6.379988 TGGTTACTTTCAAAAGGAGCTTTCTT 59.620 34.615 7.37 0.00 40.31 2.52
1892 5669 7.093509 TGGTTACTTTCAAAAGGAGCTTTCTTT 60.094 33.333 9.36 9.36 40.31 2.52
1893 5670 7.764443 GGTTACTTTCAAAAGGAGCTTTCTTTT 59.236 33.333 17.54 17.54 42.92 2.27
1901 5678 6.544928 AAAGGAGCTTTCTTTTGAAAAGGA 57.455 33.333 16.79 6.17 46.42 3.36
1902 5679 5.781210 AGGAGCTTTCTTTTGAAAAGGAG 57.219 39.130 16.79 15.03 46.42 3.69
1903 5680 4.586421 AGGAGCTTTCTTTTGAAAAGGAGG 59.414 41.667 16.79 10.46 46.42 4.30
1904 5681 4.584743 GGAGCTTTCTTTTGAAAAGGAGGA 59.415 41.667 16.79 0.00 46.42 3.71
1905 5682 5.069119 GGAGCTTTCTTTTGAAAAGGAGGAA 59.931 40.000 16.79 2.32 46.42 3.36
1906 5683 6.239430 GGAGCTTTCTTTTGAAAAGGAGGAAT 60.239 38.462 16.79 2.40 46.42 3.01
1907 5684 7.039714 GGAGCTTTCTTTTGAAAAGGAGGAATA 60.040 37.037 16.79 0.00 46.42 1.75
1908 5685 7.661968 AGCTTTCTTTTGAAAAGGAGGAATAC 58.338 34.615 16.79 0.00 46.42 1.89
1909 5686 6.868864 GCTTTCTTTTGAAAAGGAGGAATACC 59.131 38.462 16.79 0.00 46.42 2.73
1910 5687 6.911250 TTCTTTTGAAAAGGAGGAATACCC 57.089 37.500 16.79 0.00 35.17 3.69
1911 5688 5.330233 TCTTTTGAAAAGGAGGAATACCCC 58.670 41.667 16.79 0.00 36.73 4.95
1912 5689 3.750501 TTGAAAAGGAGGAATACCCCC 57.249 47.619 0.00 0.00 36.73 5.40
1913 5690 1.562475 TGAAAAGGAGGAATACCCCCG 59.438 52.381 0.00 0.00 36.73 5.73
1914 5691 0.924090 AAAAGGAGGAATACCCCCGG 59.076 55.000 0.00 0.00 36.73 5.73
1915 5692 0.253488 AAAGGAGGAATACCCCCGGT 60.253 55.000 0.00 0.00 40.16 5.28
1916 5693 0.693430 AAGGAGGAATACCCCCGGTC 60.693 60.000 0.00 0.00 37.09 4.79
1917 5694 1.074699 GGAGGAATACCCCCGGTCT 60.075 63.158 0.00 0.00 37.09 3.85
1918 5695 1.120184 GGAGGAATACCCCCGGTCTC 61.120 65.000 0.00 0.00 37.09 3.36
1919 5696 0.105607 GAGGAATACCCCCGGTCTCT 60.106 60.000 0.00 0.00 37.09 3.10
1920 5697 1.146566 GAGGAATACCCCCGGTCTCTA 59.853 57.143 0.00 0.00 37.09 2.43
1921 5698 1.793902 AGGAATACCCCCGGTCTCTAT 59.206 52.381 0.00 0.00 37.09 1.98
1922 5699 2.998910 AGGAATACCCCCGGTCTCTATA 59.001 50.000 0.00 0.00 37.09 1.31
1923 5700 3.601537 AGGAATACCCCCGGTCTCTATAT 59.398 47.826 0.00 0.00 37.09 0.86
1924 5701 3.959449 GGAATACCCCCGGTCTCTATATC 59.041 52.174 0.00 0.00 37.09 1.63
1925 5702 4.571362 GGAATACCCCCGGTCTCTATATCA 60.571 50.000 0.00 0.00 37.09 2.15
1926 5703 4.687262 ATACCCCCGGTCTCTATATCAA 57.313 45.455 0.00 0.00 37.09 2.57
1927 5704 3.562108 ACCCCCGGTCTCTATATCAAT 57.438 47.619 0.00 0.00 0.00 2.57
1928 5705 3.442076 ACCCCCGGTCTCTATATCAATC 58.558 50.000 0.00 0.00 0.00 2.67
1929 5706 2.427453 CCCCCGGTCTCTATATCAATCG 59.573 54.545 0.00 0.00 0.00 3.34
1930 5707 3.353557 CCCCGGTCTCTATATCAATCGA 58.646 50.000 0.00 0.00 0.00 3.59
1931 5708 3.954904 CCCCGGTCTCTATATCAATCGAT 59.045 47.826 0.00 0.00 35.50 3.59
1932 5709 4.202060 CCCCGGTCTCTATATCAATCGATG 60.202 50.000 0.00 0.00 32.73 3.84
1933 5710 4.355437 CCGGTCTCTATATCAATCGATGC 58.645 47.826 0.00 0.00 32.73 3.91
1934 5711 4.142381 CCGGTCTCTATATCAATCGATGCA 60.142 45.833 0.00 0.00 32.73 3.96
1935 5712 5.451103 CCGGTCTCTATATCAATCGATGCAT 60.451 44.000 0.00 0.00 32.73 3.96
1936 5713 5.458126 CGGTCTCTATATCAATCGATGCATG 59.542 44.000 2.46 0.00 32.73 4.06
1937 5714 5.233902 GGTCTCTATATCAATCGATGCATGC 59.766 44.000 11.82 11.82 32.73 4.06
1938 5715 5.809051 GTCTCTATATCAATCGATGCATGCA 59.191 40.000 25.04 25.04 32.73 3.96
1939 5716 6.019720 GTCTCTATATCAATCGATGCATGCAG 60.020 42.308 26.69 13.62 32.73 4.41
1940 5717 3.759527 ATATCAATCGATGCATGCAGC 57.240 42.857 25.69 25.69 45.96 5.25
1941 5718 0.596577 ATCAATCGATGCATGCAGCC 59.403 50.000 28.76 19.54 44.83 4.85
1942 5719 0.748729 TCAATCGATGCATGCAGCCA 60.749 50.000 28.76 18.55 44.83 4.75
1943 5720 0.313987 CAATCGATGCATGCAGCCAT 59.686 50.000 28.76 20.10 44.83 4.40
1944 5721 1.538075 CAATCGATGCATGCAGCCATA 59.462 47.619 28.76 15.64 44.83 2.74
1945 5722 2.124277 ATCGATGCATGCAGCCATAT 57.876 45.000 28.76 17.14 44.83 1.78
1946 5723 1.900245 TCGATGCATGCAGCCATATT 58.100 45.000 28.76 9.02 44.83 1.28
1947 5724 3.056588 TCGATGCATGCAGCCATATTA 57.943 42.857 28.76 6.06 44.83 0.98
1948 5725 3.613030 TCGATGCATGCAGCCATATTAT 58.387 40.909 28.76 7.39 44.83 1.28
1949 5726 4.011698 TCGATGCATGCAGCCATATTATT 58.988 39.130 28.76 6.59 44.83 1.40
1950 5727 5.184711 TCGATGCATGCAGCCATATTATTA 58.815 37.500 28.76 0.00 44.83 0.98
1951 5728 5.647225 TCGATGCATGCAGCCATATTATTAA 59.353 36.000 28.76 0.00 44.83 1.40
1952 5729 6.150809 TCGATGCATGCAGCCATATTATTAAA 59.849 34.615 28.76 0.00 44.83 1.52
1953 5730 6.976349 CGATGCATGCAGCCATATTATTAAAT 59.024 34.615 28.76 4.60 44.83 1.40
1954 5731 8.130469 CGATGCATGCAGCCATATTATTAAATA 58.870 33.333 28.76 0.00 44.83 1.40
1955 5732 9.806203 GATGCATGCAGCCATATTATTAAATAA 57.194 29.630 25.21 0.00 44.83 1.40
1957 5734 9.993454 TGCATGCAGCCATATTATTAAATAAAA 57.007 25.926 18.46 0.00 44.83 1.52
1979 5756 7.462571 AAAATGTAACAAGGTCATAAGGTCC 57.537 36.000 0.00 0.00 0.00 4.46
1980 5757 5.772393 ATGTAACAAGGTCATAAGGTCCA 57.228 39.130 0.00 0.00 0.00 4.02
1981 5758 5.570205 TGTAACAAGGTCATAAGGTCCAA 57.430 39.130 0.00 0.00 0.00 3.53
1982 5759 5.942961 TGTAACAAGGTCATAAGGTCCAAA 58.057 37.500 0.00 0.00 0.00 3.28
1983 5760 6.366340 TGTAACAAGGTCATAAGGTCCAAAA 58.634 36.000 0.00 0.00 0.00 2.44
1984 5761 6.834451 TGTAACAAGGTCATAAGGTCCAAAAA 59.166 34.615 0.00 0.00 0.00 1.94
1985 5762 6.994421 AACAAGGTCATAAGGTCCAAAAAT 57.006 33.333 0.00 0.00 0.00 1.82
1986 5763 6.345096 ACAAGGTCATAAGGTCCAAAAATG 57.655 37.500 0.00 0.00 0.00 2.32
1987 5764 5.170748 CAAGGTCATAAGGTCCAAAAATGC 58.829 41.667 0.00 0.00 0.00 3.56
1988 5765 4.677182 AGGTCATAAGGTCCAAAAATGCT 58.323 39.130 0.00 0.00 0.00 3.79
1989 5766 4.706962 AGGTCATAAGGTCCAAAAATGCTC 59.293 41.667 0.00 0.00 0.00 4.26
1990 5767 4.462483 GGTCATAAGGTCCAAAAATGCTCA 59.538 41.667 0.00 0.00 0.00 4.26
1991 5768 5.127682 GGTCATAAGGTCCAAAAATGCTCAT 59.872 40.000 0.00 0.00 0.00 2.90
1992 5769 6.351286 GGTCATAAGGTCCAAAAATGCTCATT 60.351 38.462 0.00 0.00 0.00 2.57
1993 5770 7.099120 GTCATAAGGTCCAAAAATGCTCATTT 58.901 34.615 2.24 2.24 42.35 2.32
1994 5771 7.276438 GTCATAAGGTCCAAAAATGCTCATTTC 59.724 37.037 8.14 0.00 39.88 2.17
1995 5772 5.549742 AAGGTCCAAAAATGCTCATTTCA 57.450 34.783 8.14 0.00 39.88 2.69
1996 5773 5.549742 AGGTCCAAAAATGCTCATTTCAA 57.450 34.783 8.14 0.00 39.88 2.69
1997 5774 5.927819 AGGTCCAAAAATGCTCATTTCAAA 58.072 33.333 8.14 0.00 39.88 2.69
1998 5775 6.355747 AGGTCCAAAAATGCTCATTTCAAAA 58.644 32.000 8.14 0.00 39.88 2.44
1999 5776 6.484308 AGGTCCAAAAATGCTCATTTCAAAAG 59.516 34.615 8.14 0.00 39.88 2.27
2000 5777 6.293571 GGTCCAAAAATGCTCATTTCAAAAGG 60.294 38.462 8.14 6.69 39.88 3.11
2001 5778 6.482973 GTCCAAAAATGCTCATTTCAAAAGGA 59.517 34.615 8.14 8.43 39.88 3.36
2002 5779 6.707161 TCCAAAAATGCTCATTTCAAAAGGAG 59.293 34.615 11.68 11.68 46.41 3.69
2017 5794 3.283259 AAGGAGCTACAGGGTAAATGC 57.717 47.619 0.00 0.00 0.00 3.56
2061 5840 1.072505 CACTGGCCGTGTAGGGTTT 59.927 57.895 16.51 0.00 41.48 3.27
2115 5894 1.080025 GTACCACACGAGCACCCTC 60.080 63.158 0.00 0.00 34.66 4.30
2127 5907 3.252215 CGAGCACCCTCAATACAAAACAA 59.748 43.478 0.00 0.00 38.00 2.83
2132 5912 6.322712 AGCACCCTCAATACAAAACAAAAGTA 59.677 34.615 0.00 0.00 0.00 2.24
2211 5991 6.720012 AACAAAAAGTTTGGTGCTTGTAAG 57.280 33.333 5.76 0.00 37.03 2.34
2251 6031 9.444600 GGTACTAACTTGGATATTGTTTCAGAA 57.555 33.333 0.00 0.00 0.00 3.02
2350 6132 8.288217 TCGGTGCATTTTTAACAAAATAAGTC 57.712 30.769 0.00 0.00 40.09 3.01
2403 6186 1.973812 GGCTTTGTGAGTGAGGGCC 60.974 63.158 0.00 0.00 0.00 5.80
2407 6190 0.038166 TTTGTGAGTGAGGGCCCATC 59.962 55.000 27.56 18.86 0.00 3.51
2420 6203 0.034863 GCCCATCGGGTCTTGGTTTA 60.035 55.000 0.06 0.00 46.51 2.01
2421 6204 1.746470 CCCATCGGGTCTTGGTTTAC 58.254 55.000 0.00 0.00 38.25 2.01
2429 6212 1.869132 GGTCTTGGTTTACGGTGTGAC 59.131 52.381 0.00 0.00 0.00 3.67
2438 6221 0.038892 TACGGTGTGACTCGCTTTCC 60.039 55.000 0.00 0.00 0.00 3.13
2482 6265 5.886609 TGGATCAATTCCTAACAAGGACAA 58.113 37.500 0.00 0.00 45.68 3.18
2485 6268 6.378280 GGATCAATTCCTAACAAGGACAATGT 59.622 38.462 0.00 0.00 41.78 2.71
2538 6321 5.625656 GCTCTTGACTTTGTGGTCTAGCTAT 60.626 44.000 0.00 0.00 38.36 2.97
2543 6326 2.691409 TTGTGGTCTAGCTATGCACC 57.309 50.000 8.95 8.95 0.00 5.01
2562 6345 1.756538 CCTGGGTAATGTTTGGCCATC 59.243 52.381 6.09 3.51 0.00 3.51
2574 6357 5.904941 TGTTTGGCCATCATCATAAATGAC 58.095 37.500 6.09 0.00 40.03 3.06
2579 6362 5.010213 TGGCCATCATCATAAATGACATGTG 59.990 40.000 1.15 0.00 40.03 3.21
2596 6379 9.926158 ATGACATGTGATTAAGTGCATTTTTAA 57.074 25.926 1.15 1.86 0.00 1.52
2597 6380 9.409312 TGACATGTGATTAAGTGCATTTTTAAG 57.591 29.630 1.15 0.00 0.00 1.85
2598 6381 9.624697 GACATGTGATTAAGTGCATTTTTAAGA 57.375 29.630 1.15 0.00 0.00 2.10
2651 6437 3.465403 CGTCAGCTGGGAGAGGGG 61.465 72.222 15.13 0.00 0.00 4.79
2660 6446 4.785453 GGAGAGGGGTGGCAAGCG 62.785 72.222 0.00 0.00 0.00 4.68
2666 6452 3.723348 GGGTGGCAAGCGAACGTC 61.723 66.667 0.00 0.00 0.00 4.34
2672 6458 0.729140 GGCAAGCGAACGTCATTTGG 60.729 55.000 0.00 0.00 0.00 3.28
2678 6464 0.309302 CGAACGTCATTTGGTGGCAA 59.691 50.000 0.00 0.00 30.99 4.52
2680 6466 2.606795 CGAACGTCATTTGGTGGCAATT 60.607 45.455 0.00 0.00 30.99 2.32
2703 6489 9.971922 AATTTTAGTTGTGAGGAAAGATCAAAG 57.028 29.630 0.00 0.00 0.00 2.77
2710 6496 3.263261 GAGGAAAGATCAAAGGACGACC 58.737 50.000 0.00 0.00 0.00 4.79
2711 6497 2.637872 AGGAAAGATCAAAGGACGACCA 59.362 45.455 6.71 0.00 38.94 4.02
2712 6498 3.072476 AGGAAAGATCAAAGGACGACCAA 59.928 43.478 6.71 0.00 38.94 3.67
2713 6499 3.818773 GGAAAGATCAAAGGACGACCAAA 59.181 43.478 6.71 0.00 38.94 3.28
2714 6500 4.320275 GGAAAGATCAAAGGACGACCAAAC 60.320 45.833 6.71 0.00 38.94 2.93
2715 6501 2.779506 AGATCAAAGGACGACCAAACC 58.220 47.619 6.71 0.00 38.94 3.27
2716 6502 1.810755 GATCAAAGGACGACCAAACCC 59.189 52.381 6.71 0.00 38.94 4.11
2717 6503 0.841289 TCAAAGGACGACCAAACCCT 59.159 50.000 6.71 0.00 38.94 4.34
2718 6504 0.951558 CAAAGGACGACCAAACCCTG 59.048 55.000 6.71 0.00 38.94 4.45
2719 6505 0.841289 AAAGGACGACCAAACCCTGA 59.159 50.000 6.71 0.00 38.94 3.86
2720 6506 0.841289 AAGGACGACCAAACCCTGAA 59.159 50.000 6.71 0.00 38.94 3.02
2721 6507 0.108019 AGGACGACCAAACCCTGAAC 59.892 55.000 6.71 0.00 38.94 3.18
2722 6508 0.179040 GGACGACCAAACCCTGAACA 60.179 55.000 0.00 0.00 35.97 3.18
2723 6509 1.670791 GACGACCAAACCCTGAACAA 58.329 50.000 0.00 0.00 0.00 2.83
2724 6510 1.602377 GACGACCAAACCCTGAACAAG 59.398 52.381 0.00 0.00 0.00 3.16
2725 6511 0.951558 CGACCAAACCCTGAACAAGG 59.048 55.000 0.00 0.00 46.94 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.543783 TGGACTTTTTAGAGACTTTTTCTAGTC 57.456 33.333 0.00 0.00 43.90 2.59
22 23 9.508642 CCTATGGACTTTTTAGAGACTTTTTCT 57.491 33.333 0.00 0.00 37.23 2.52
23 24 9.503399 TCCTATGGACTTTTTAGAGACTTTTTC 57.497 33.333 0.00 0.00 0.00 2.29
24 25 9.862149 TTCCTATGGACTTTTTAGAGACTTTTT 57.138 29.630 0.00 0.00 0.00 1.94
26 27 9.674068 GATTCCTATGGACTTTTTAGAGACTTT 57.326 33.333 0.00 0.00 0.00 2.66
27 28 8.826765 TGATTCCTATGGACTTTTTAGAGACTT 58.173 33.333 0.00 0.00 0.00 3.01
28 29 8.380742 TGATTCCTATGGACTTTTTAGAGACT 57.619 34.615 0.00 0.00 0.00 3.24
29 30 9.449719 TTTGATTCCTATGGACTTTTTAGAGAC 57.550 33.333 0.00 0.00 0.00 3.36
30 31 9.449719 GTTTGATTCCTATGGACTTTTTAGAGA 57.550 33.333 0.00 0.00 0.00 3.10
31 32 8.391106 CGTTTGATTCCTATGGACTTTTTAGAG 58.609 37.037 0.00 0.00 0.00 2.43
32 33 7.335924 CCGTTTGATTCCTATGGACTTTTTAGA 59.664 37.037 0.00 0.00 0.00 2.10
33 34 7.335924 TCCGTTTGATTCCTATGGACTTTTTAG 59.664 37.037 0.00 0.00 0.00 1.85
34 35 7.169591 TCCGTTTGATTCCTATGGACTTTTTA 58.830 34.615 0.00 0.00 0.00 1.52
35 36 6.007703 TCCGTTTGATTCCTATGGACTTTTT 58.992 36.000 0.00 0.00 0.00 1.94
36 37 5.566469 TCCGTTTGATTCCTATGGACTTTT 58.434 37.500 0.00 0.00 0.00 2.27
37 38 5.174037 TCCGTTTGATTCCTATGGACTTT 57.826 39.130 0.00 0.00 0.00 2.66
38 39 4.837093 TCCGTTTGATTCCTATGGACTT 57.163 40.909 0.00 0.00 0.00 3.01
39 40 4.384208 CCTTCCGTTTGATTCCTATGGACT 60.384 45.833 0.00 0.00 0.00 3.85
40 41 3.877508 CCTTCCGTTTGATTCCTATGGAC 59.122 47.826 0.00 0.00 0.00 4.02
41 42 3.118038 CCCTTCCGTTTGATTCCTATGGA 60.118 47.826 0.00 0.00 0.00 3.41
42 43 3.118038 TCCCTTCCGTTTGATTCCTATGG 60.118 47.826 0.00 0.00 0.00 2.74
43 44 3.877508 GTCCCTTCCGTTTGATTCCTATG 59.122 47.826 0.00 0.00 0.00 2.23
44 45 3.780850 AGTCCCTTCCGTTTGATTCCTAT 59.219 43.478 0.00 0.00 0.00 2.57
45 46 3.178865 AGTCCCTTCCGTTTGATTCCTA 58.821 45.455 0.00 0.00 0.00 2.94
46 47 1.985895 AGTCCCTTCCGTTTGATTCCT 59.014 47.619 0.00 0.00 0.00 3.36
47 48 2.491675 AGTCCCTTCCGTTTGATTCC 57.508 50.000 0.00 0.00 0.00 3.01
48 49 4.848562 AAAAGTCCCTTCCGTTTGATTC 57.151 40.909 0.00 0.00 0.00 2.52
49 50 4.893524 AGAAAAAGTCCCTTCCGTTTGATT 59.106 37.500 0.00 0.00 0.00 2.57
50 51 4.470602 AGAAAAAGTCCCTTCCGTTTGAT 58.529 39.130 0.00 0.00 0.00 2.57
51 52 3.893521 AGAAAAAGTCCCTTCCGTTTGA 58.106 40.909 0.00 0.00 0.00 2.69
52 53 4.577283 TGTAGAAAAAGTCCCTTCCGTTTG 59.423 41.667 0.00 0.00 0.00 2.93
53 54 4.784177 TGTAGAAAAAGTCCCTTCCGTTT 58.216 39.130 0.00 0.00 0.00 3.60
54 55 4.386711 CTGTAGAAAAAGTCCCTTCCGTT 58.613 43.478 0.00 0.00 0.00 4.44
55 56 3.244457 CCTGTAGAAAAAGTCCCTTCCGT 60.244 47.826 0.00 0.00 0.00 4.69
56 57 3.007614 TCCTGTAGAAAAAGTCCCTTCCG 59.992 47.826 0.00 0.00 0.00 4.30
57 58 4.635699 TCCTGTAGAAAAAGTCCCTTCC 57.364 45.455 0.00 0.00 0.00 3.46
58 59 7.621796 TCTAATCCTGTAGAAAAAGTCCCTTC 58.378 38.462 0.00 0.00 0.00 3.46
59 60 7.569599 TCTAATCCTGTAGAAAAAGTCCCTT 57.430 36.000 0.00 0.00 0.00 3.95
60 61 7.569599 TTCTAATCCTGTAGAAAAAGTCCCT 57.430 36.000 0.00 0.00 37.20 4.20
70 71 9.756571 AGTAGAGTCTTTTTCTAATCCTGTAGA 57.243 33.333 0.00 0.00 0.00 2.59
71 72 9.796120 CAGTAGAGTCTTTTTCTAATCCTGTAG 57.204 37.037 0.00 0.00 0.00 2.74
72 73 9.529823 TCAGTAGAGTCTTTTTCTAATCCTGTA 57.470 33.333 0.00 0.00 0.00 2.74
73 74 8.423906 TCAGTAGAGTCTTTTTCTAATCCTGT 57.576 34.615 0.00 0.00 0.00 4.00
74 75 9.364989 CTTCAGTAGAGTCTTTTTCTAATCCTG 57.635 37.037 0.00 0.00 0.00 3.86
75 76 9.315363 TCTTCAGTAGAGTCTTTTTCTAATCCT 57.685 33.333 0.00 0.00 0.00 3.24
76 77 9.581099 CTCTTCAGTAGAGTCTTTTTCTAATCC 57.419 37.037 0.00 0.00 44.54 3.01
106 107 3.745799 TGTCCCAGCGACTAATCAAAAA 58.254 40.909 0.00 0.00 42.49 1.94
107 108 3.410631 TGTCCCAGCGACTAATCAAAA 57.589 42.857 0.00 0.00 42.49 2.44
108 109 3.410631 TTGTCCCAGCGACTAATCAAA 57.589 42.857 0.00 0.00 42.49 2.69
109 110 3.410631 TTTGTCCCAGCGACTAATCAA 57.589 42.857 0.00 0.00 42.49 2.57
110 111 3.410631 TTTTGTCCCAGCGACTAATCA 57.589 42.857 0.00 0.00 42.49 2.57
133 134 7.703621 GGTTGTTTTGTTTAAAAGTCCTAGGAC 59.296 37.037 31.29 31.29 44.86 3.85
134 135 7.147863 GGGTTGTTTTGTTTAAAAGTCCTAGGA 60.148 37.037 7.62 7.62 36.51 2.94
135 136 6.982141 GGGTTGTTTTGTTTAAAAGTCCTAGG 59.018 38.462 0.82 0.82 36.51 3.02
136 137 6.982141 GGGGTTGTTTTGTTTAAAAGTCCTAG 59.018 38.462 0.00 0.00 36.51 3.02
137 138 6.668718 AGGGGTTGTTTTGTTTAAAAGTCCTA 59.331 34.615 0.00 0.00 36.51 2.94
138 139 5.486063 AGGGGTTGTTTTGTTTAAAAGTCCT 59.514 36.000 0.00 0.00 36.51 3.85
139 140 5.736813 AGGGGTTGTTTTGTTTAAAAGTCC 58.263 37.500 0.00 0.00 36.51 3.85
140 141 6.399743 TGAGGGGTTGTTTTGTTTAAAAGTC 58.600 36.000 0.00 0.00 36.51 3.01
141 142 6.361768 TGAGGGGTTGTTTTGTTTAAAAGT 57.638 33.333 0.00 0.00 36.51 2.66
142 143 5.293324 GCTGAGGGGTTGTTTTGTTTAAAAG 59.707 40.000 0.00 0.00 36.51 2.27
143 144 5.179533 GCTGAGGGGTTGTTTTGTTTAAAA 58.820 37.500 0.00 0.00 33.57 1.52
144 145 4.383226 GGCTGAGGGGTTGTTTTGTTTAAA 60.383 41.667 0.00 0.00 0.00 1.52
145 146 3.133183 GGCTGAGGGGTTGTTTTGTTTAA 59.867 43.478 0.00 0.00 0.00 1.52
146 147 2.696187 GGCTGAGGGGTTGTTTTGTTTA 59.304 45.455 0.00 0.00 0.00 2.01
147 148 1.484653 GGCTGAGGGGTTGTTTTGTTT 59.515 47.619 0.00 0.00 0.00 2.83
148 149 1.119684 GGCTGAGGGGTTGTTTTGTT 58.880 50.000 0.00 0.00 0.00 2.83
149 150 1.106944 CGGCTGAGGGGTTGTTTTGT 61.107 55.000 0.00 0.00 0.00 2.83
150 151 0.821711 TCGGCTGAGGGGTTGTTTTG 60.822 55.000 0.00 0.00 0.00 2.44
151 152 0.112412 ATCGGCTGAGGGGTTGTTTT 59.888 50.000 0.00 0.00 0.00 2.43
152 153 0.609131 CATCGGCTGAGGGGTTGTTT 60.609 55.000 0.00 0.00 0.00 2.83
153 154 1.002134 CATCGGCTGAGGGGTTGTT 60.002 57.895 0.00 0.00 0.00 2.83
154 155 2.671070 CATCGGCTGAGGGGTTGT 59.329 61.111 0.00 0.00 0.00 3.32
155 156 2.124570 CCATCGGCTGAGGGGTTG 60.125 66.667 18.78 1.98 42.40 3.77
156 157 2.285368 TCCATCGGCTGAGGGGTT 60.285 61.111 25.34 0.00 46.14 4.11
157 158 2.765807 CTCCATCGGCTGAGGGGT 60.766 66.667 25.34 0.00 46.14 4.95
158 159 3.554342 CCTCCATCGGCTGAGGGG 61.554 72.222 25.34 16.98 46.14 4.79
159 160 4.247380 GCCTCCATCGGCTGAGGG 62.247 72.222 20.43 20.43 46.79 4.30
188 189 4.126437 TGTACCACACAAGACAATGACAG 58.874 43.478 0.00 0.00 32.95 3.51
206 207 2.159000 GGCCTGGTATGGTGTACTGTAC 60.159 54.545 10.98 10.98 0.00 2.90
207 208 2.112998 GGCCTGGTATGGTGTACTGTA 58.887 52.381 0.00 0.00 0.00 2.74
208 209 0.909623 GGCCTGGTATGGTGTACTGT 59.090 55.000 0.00 0.00 0.00 3.55
209 210 0.180406 GGGCCTGGTATGGTGTACTG 59.820 60.000 0.84 0.00 0.00 2.74
210 211 0.252974 TGGGCCTGGTATGGTGTACT 60.253 55.000 4.53 0.00 0.00 2.73
271 272 2.048597 CGTACCGCCAGCACTGAA 60.049 61.111 0.00 0.00 0.00 3.02
303 304 4.261801 TCAAGGGAAAACATCGGAGAATC 58.738 43.478 0.00 0.00 43.58 2.52
311 312 7.629437 GCCTAGAAGAAATCAAGGGAAAACATC 60.629 40.741 0.00 0.00 0.00 3.06
318 319 3.189606 TGGCCTAGAAGAAATCAAGGGA 58.810 45.455 3.32 0.00 0.00 4.20
325 326 4.140536 GCTAATGCTGGCCTAGAAGAAAT 58.859 43.478 3.32 0.00 36.03 2.17
358 396 2.673368 CAATTAGCTGGAACACCGAGAC 59.327 50.000 0.00 0.00 0.00 3.36
360 398 2.009774 CCAATTAGCTGGAACACCGAG 58.990 52.381 0.00 0.00 38.96 4.63
443 552 1.286248 ACGGGGAGCTTGGTTAAGAT 58.714 50.000 0.00 0.00 35.92 2.40
444 553 1.002773 GAACGGGGAGCTTGGTTAAGA 59.997 52.381 0.00 0.00 35.92 2.10
445 554 1.003233 AGAACGGGGAGCTTGGTTAAG 59.997 52.381 0.00 0.00 36.97 1.85
451 570 2.076863 CTGTTAAGAACGGGGAGCTTG 58.923 52.381 0.00 0.00 34.07 4.01
578 697 1.484653 AGTGCTCTGGTACACAACACA 59.515 47.619 0.00 0.00 39.30 3.72
579 698 2.240493 AGTGCTCTGGTACACAACAC 57.760 50.000 0.00 0.00 39.30 3.32
580 699 3.275617 AAAGTGCTCTGGTACACAACA 57.724 42.857 0.00 0.00 39.30 3.33
581 700 5.283060 CATAAAGTGCTCTGGTACACAAC 57.717 43.478 0.00 0.00 39.30 3.32
920 1047 2.820197 CAGGAGCAATGGATGATGATGG 59.180 50.000 0.00 0.00 0.00 3.51
932 1063 1.450312 GTAGGCGCACAGGAGCAAT 60.450 57.895 10.83 0.00 42.14 3.56
934 1065 4.435436 CGTAGGCGCACAGGAGCA 62.435 66.667 10.83 0.00 42.14 4.26
1203 1334 1.597797 TTTCCGAGTCGTACCCGCAT 61.598 55.000 12.31 0.00 0.00 4.73
1240 1371 2.738521 CTTCCACAGCCCGTCGTG 60.739 66.667 0.00 0.00 0.00 4.35
1378 1510 7.865706 AAAATAACCAATAGCTACCTCACAG 57.134 36.000 0.00 0.00 0.00 3.66
1457 2813 6.147821 ACATCTAGATTTATTCAATTCCGCGG 59.852 38.462 22.12 22.12 0.00 6.46
1510 2869 6.766467 GGAGGTAGTATCATCGTTCCAATTTT 59.234 38.462 0.00 0.00 0.00 1.82
1513 2872 4.022242 CGGAGGTAGTATCATCGTTCCAAT 60.022 45.833 0.00 0.00 0.00 3.16
1514 2873 3.317149 CGGAGGTAGTATCATCGTTCCAA 59.683 47.826 0.00 0.00 0.00 3.53
1515 2874 2.882761 CGGAGGTAGTATCATCGTTCCA 59.117 50.000 0.00 0.00 0.00 3.53
1516 2875 2.883386 ACGGAGGTAGTATCATCGTTCC 59.117 50.000 0.00 0.00 0.00 3.62
1519 2878 2.883386 GGAACGGAGGTAGTATCATCGT 59.117 50.000 0.00 0.00 0.00 3.73
1520 2879 3.147629 AGGAACGGAGGTAGTATCATCG 58.852 50.000 0.00 0.00 0.00 3.84
1521 2880 6.645790 TTTAGGAACGGAGGTAGTATCATC 57.354 41.667 0.00 0.00 0.00 2.92
1522 2881 8.896722 ATATTTAGGAACGGAGGTAGTATCAT 57.103 34.615 0.00 0.00 0.00 2.45
1523 2882 8.716674 AATATTTAGGAACGGAGGTAGTATCA 57.283 34.615 0.00 0.00 0.00 2.15
1524 2883 9.420551 CAAATATTTAGGAACGGAGGTAGTATC 57.579 37.037 0.00 0.00 0.00 2.24
1527 2886 7.125356 AGACAAATATTTAGGAACGGAGGTAGT 59.875 37.037 0.00 0.00 0.00 2.73
1528 2887 7.498443 AGACAAATATTTAGGAACGGAGGTAG 58.502 38.462 0.00 0.00 0.00 3.18
1529 2888 7.427989 AGACAAATATTTAGGAACGGAGGTA 57.572 36.000 0.00 0.00 0.00 3.08
1530 2889 6.309389 AGACAAATATTTAGGAACGGAGGT 57.691 37.500 0.00 0.00 0.00 3.85
1531 2890 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1559 2918 8.026607 CGTATGTGGTAGTCCATTTGAAATTTT 58.973 33.333 0.00 0.00 46.20 1.82
1560 2919 7.392113 TCGTATGTGGTAGTCCATTTGAAATTT 59.608 33.333 0.00 0.00 46.20 1.82
1561 2920 6.882140 TCGTATGTGGTAGTCCATTTGAAATT 59.118 34.615 0.00 0.00 46.20 1.82
1562 2921 6.411376 TCGTATGTGGTAGTCCATTTGAAAT 58.589 36.000 0.00 0.00 46.20 2.17
1563 2922 5.795972 TCGTATGTGGTAGTCCATTTGAAA 58.204 37.500 0.00 0.00 46.20 2.69
1564 2923 5.408880 TCGTATGTGGTAGTCCATTTGAA 57.591 39.130 0.00 0.00 46.20 2.69
1565 2924 5.408880 TTCGTATGTGGTAGTCCATTTGA 57.591 39.130 0.00 0.00 46.20 2.69
1566 2925 5.584649 ACATTCGTATGTGGTAGTCCATTTG 59.415 40.000 6.89 0.00 46.20 2.32
1567 2926 5.741011 ACATTCGTATGTGGTAGTCCATTT 58.259 37.500 6.89 0.00 46.20 2.32
1568 2927 5.353394 ACATTCGTATGTGGTAGTCCATT 57.647 39.130 6.89 0.00 46.20 3.16
1569 2928 6.665992 ATACATTCGTATGTGGTAGTCCAT 57.334 37.500 16.91 0.00 44.56 3.41
1570 2929 7.770366 ATATACATTCGTATGTGGTAGTCCA 57.230 36.000 16.91 0.00 44.56 4.02
1571 2930 7.914346 GCTATATACATTCGTATGTGGTAGTCC 59.086 40.741 16.91 3.00 44.56 3.85
1572 2931 8.675504 AGCTATATACATTCGTATGTGGTAGTC 58.324 37.037 16.91 11.20 44.56 2.59
1573 2932 8.577048 AGCTATATACATTCGTATGTGGTAGT 57.423 34.615 16.91 2.71 44.56 2.73
1607 2966 8.883731 CGGAGTAAAATGAGTGAATCTACATTT 58.116 33.333 0.00 0.00 42.25 2.32
1608 2967 8.041323 ACGGAGTAAAATGAGTGAATCTACATT 58.959 33.333 0.00 0.00 41.94 2.71
1609 2968 7.556844 ACGGAGTAAAATGAGTGAATCTACAT 58.443 34.615 0.00 0.00 41.94 2.29
1610 2969 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
1653 3012 9.338622 CCTCCGTTCCTAAATATTTGTCTTTAT 57.661 33.333 11.05 0.00 0.00 1.40
1654 3013 7.771826 CCCTCCGTTCCTAAATATTTGTCTTTA 59.228 37.037 11.05 0.00 0.00 1.85
1655 3014 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1656 3015 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1657 3016 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1658 3017 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1659 3018 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1660 3019 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1661 3020 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1662 3021 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
1663 3022 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
1664 3023 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1665 3024 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1666 3025 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1667 3026 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1668 3027 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
1669 3028 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
1670 3029 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
1671 3030 0.464452 CCCATGTACTCCCTCCGTTC 59.536 60.000 0.00 0.00 0.00 3.95
1672 3031 0.042131 TCCCATGTACTCCCTCCGTT 59.958 55.000 0.00 0.00 0.00 4.44
1673 3032 0.042131 TTCCCATGTACTCCCTCCGT 59.958 55.000 0.00 0.00 0.00 4.69
1674 3033 0.753262 CTTCCCATGTACTCCCTCCG 59.247 60.000 0.00 0.00 0.00 4.63
1675 3034 2.043227 CTCTTCCCATGTACTCCCTCC 58.957 57.143 0.00 0.00 0.00 4.30
1676 3035 3.033659 TCTCTTCCCATGTACTCCCTC 57.966 52.381 0.00 0.00 0.00 4.30
1677 3036 3.491766 TTCTCTTCCCATGTACTCCCT 57.508 47.619 0.00 0.00 0.00 4.20
1678 3037 4.569719 TTTTCTCTTCCCATGTACTCCC 57.430 45.455 0.00 0.00 0.00 4.30
1679 3038 4.944317 CCTTTTTCTCTTCCCATGTACTCC 59.056 45.833 0.00 0.00 0.00 3.85
1680 3039 5.644206 GTCCTTTTTCTCTTCCCATGTACTC 59.356 44.000 0.00 0.00 0.00 2.59
1681 3040 5.073144 TGTCCTTTTTCTCTTCCCATGTACT 59.927 40.000 0.00 0.00 0.00 2.73
1682 3041 5.313712 TGTCCTTTTTCTCTTCCCATGTAC 58.686 41.667 0.00 0.00 0.00 2.90
1683 3042 5.309543 TCTGTCCTTTTTCTCTTCCCATGTA 59.690 40.000 0.00 0.00 0.00 2.29
1684 3043 4.104738 TCTGTCCTTTTTCTCTTCCCATGT 59.895 41.667 0.00 0.00 0.00 3.21
1685 3044 4.457257 GTCTGTCCTTTTTCTCTTCCCATG 59.543 45.833 0.00 0.00 0.00 3.66
1686 3045 4.104738 TGTCTGTCCTTTTTCTCTTCCCAT 59.895 41.667 0.00 0.00 0.00 4.00
1687 3046 3.458118 TGTCTGTCCTTTTTCTCTTCCCA 59.542 43.478 0.00 0.00 0.00 4.37
1688 3047 4.086706 TGTCTGTCCTTTTTCTCTTCCC 57.913 45.455 0.00 0.00 0.00 3.97
1689 3048 5.066593 ACATGTCTGTCCTTTTTCTCTTCC 58.933 41.667 0.00 0.00 0.00 3.46
1690 3049 6.234723 GACATGTCTGTCCTTTTTCTCTTC 57.765 41.667 18.83 0.00 45.06 2.87
1703 3062 2.226437 GCCAAACATTCGACATGTCTGT 59.774 45.455 22.95 17.23 38.67 3.41
1708 3067 0.109827 TGCGCCAAACATTCGACATG 60.110 50.000 4.18 0.00 0.00 3.21
1712 3071 2.430546 AATTTGCGCCAAACATTCGA 57.569 40.000 4.18 0.00 36.13 3.71
1725 3084 4.161333 GCTCGTGCCATATCATAATTTGC 58.839 43.478 0.00 0.00 0.00 3.68
1749 4812 6.426937 TGTTGACAGGTTTTGAGATAGCTTAC 59.573 38.462 0.00 0.00 0.00 2.34
1887 5664 5.778241 GGGGTATTCCTCCTTTTCAAAAGAA 59.222 40.000 11.73 0.00 35.33 2.52
1888 5665 5.330233 GGGGTATTCCTCCTTTTCAAAAGA 58.670 41.667 11.73 0.00 35.33 2.52
1889 5666 5.661056 GGGGTATTCCTCCTTTTCAAAAG 57.339 43.478 2.55 2.55 35.33 2.27
1900 5677 0.105607 AGAGACCGGGGGTATTCCTC 60.106 60.000 6.32 0.00 35.25 3.71
1901 5678 1.238615 TAGAGACCGGGGGTATTCCT 58.761 55.000 6.32 0.00 35.25 3.36
1902 5679 2.322339 ATAGAGACCGGGGGTATTCC 57.678 55.000 6.32 0.00 35.25 3.01
1903 5680 4.607239 TGATATAGAGACCGGGGGTATTC 58.393 47.826 6.32 0.00 35.25 1.75
1904 5681 4.687262 TGATATAGAGACCGGGGGTATT 57.313 45.455 6.32 0.00 35.25 1.89
1905 5682 4.687262 TTGATATAGAGACCGGGGGTAT 57.313 45.455 6.32 0.00 35.25 2.73
1906 5683 4.607239 GATTGATATAGAGACCGGGGGTA 58.393 47.826 6.32 0.00 35.25 3.69
1907 5684 3.442076 GATTGATATAGAGACCGGGGGT 58.558 50.000 6.32 0.00 39.44 4.95
1908 5685 2.427453 CGATTGATATAGAGACCGGGGG 59.573 54.545 6.32 0.00 0.00 5.40
1909 5686 3.353557 TCGATTGATATAGAGACCGGGG 58.646 50.000 6.32 0.00 0.00 5.73
1910 5687 4.734989 GCATCGATTGATATAGAGACCGGG 60.735 50.000 6.32 0.00 32.18 5.73
1911 5688 4.142381 TGCATCGATTGATATAGAGACCGG 60.142 45.833 0.00 0.00 32.18 5.28
1912 5689 4.986622 TGCATCGATTGATATAGAGACCG 58.013 43.478 0.00 0.00 32.18 4.79
1913 5690 5.233902 GCATGCATCGATTGATATAGAGACC 59.766 44.000 14.21 0.00 32.18 3.85
1914 5691 5.809051 TGCATGCATCGATTGATATAGAGAC 59.191 40.000 18.46 0.00 32.18 3.36
1915 5692 5.969423 TGCATGCATCGATTGATATAGAGA 58.031 37.500 18.46 0.00 32.18 3.10
1916 5693 5.276915 GCTGCATGCATCGATTGATATAGAG 60.277 44.000 22.97 4.39 42.31 2.43
1917 5694 4.569564 GCTGCATGCATCGATTGATATAGA 59.430 41.667 22.97 0.00 42.31 1.98
1918 5695 4.260661 GGCTGCATGCATCGATTGATATAG 60.261 45.833 22.97 5.57 45.15 1.31
1919 5696 3.624410 GGCTGCATGCATCGATTGATATA 59.376 43.478 22.97 0.00 45.15 0.86
1920 5697 2.422479 GGCTGCATGCATCGATTGATAT 59.578 45.455 22.97 0.00 45.15 1.63
1921 5698 1.808343 GGCTGCATGCATCGATTGATA 59.192 47.619 22.97 0.00 45.15 2.15
1922 5699 0.596577 GGCTGCATGCATCGATTGAT 59.403 50.000 22.97 0.00 45.15 2.57
1923 5700 0.748729 TGGCTGCATGCATCGATTGA 60.749 50.000 22.97 0.00 45.15 2.57
1924 5701 0.313987 ATGGCTGCATGCATCGATTG 59.686 50.000 22.97 9.56 45.15 2.67
1925 5702 1.900245 TATGGCTGCATGCATCGATT 58.100 45.000 22.97 7.71 45.15 3.34
1926 5703 2.124277 ATATGGCTGCATGCATCGAT 57.876 45.000 22.97 21.43 45.15 3.59
1927 5704 1.900245 AATATGGCTGCATGCATCGA 58.100 45.000 22.97 15.35 45.15 3.59
1928 5705 4.365899 AATAATATGGCTGCATGCATCG 57.634 40.909 22.97 12.00 45.15 3.84
1929 5706 9.806203 TTATTTAATAATATGGCTGCATGCATC 57.194 29.630 22.97 17.75 45.15 3.91
1931 5708 9.993454 TTTTATTTAATAATATGGCTGCATGCA 57.007 25.926 21.29 21.29 45.15 3.96
1953 5730 9.016438 GGACCTTATGACCTTGTTACATTTTTA 57.984 33.333 0.00 0.00 0.00 1.52
1954 5731 7.507616 TGGACCTTATGACCTTGTTACATTTTT 59.492 33.333 0.00 0.00 0.00 1.94
1955 5732 7.007723 TGGACCTTATGACCTTGTTACATTTT 58.992 34.615 0.00 0.00 0.00 1.82
1956 5733 6.548321 TGGACCTTATGACCTTGTTACATTT 58.452 36.000 0.00 0.00 0.00 2.32
1957 5734 6.134535 TGGACCTTATGACCTTGTTACATT 57.865 37.500 0.00 0.00 0.00 2.71
1958 5735 5.772393 TGGACCTTATGACCTTGTTACAT 57.228 39.130 0.00 0.00 0.00 2.29
1959 5736 5.570205 TTGGACCTTATGACCTTGTTACA 57.430 39.130 0.00 0.00 0.00 2.41
1960 5737 6.887626 TTTTGGACCTTATGACCTTGTTAC 57.112 37.500 0.00 0.00 0.00 2.50
1961 5738 7.524698 GCATTTTTGGACCTTATGACCTTGTTA 60.525 37.037 0.00 0.00 0.00 2.41
1962 5739 6.741240 GCATTTTTGGACCTTATGACCTTGTT 60.741 38.462 0.00 0.00 0.00 2.83
1963 5740 5.279456 GCATTTTTGGACCTTATGACCTTGT 60.279 40.000 0.00 0.00 0.00 3.16
1964 5741 5.047092 AGCATTTTTGGACCTTATGACCTTG 60.047 40.000 0.00 0.00 0.00 3.61
1965 5742 5.086621 AGCATTTTTGGACCTTATGACCTT 58.913 37.500 0.00 0.00 0.00 3.50
1966 5743 4.677182 AGCATTTTTGGACCTTATGACCT 58.323 39.130 0.00 0.00 0.00 3.85
1967 5744 4.462483 TGAGCATTTTTGGACCTTATGACC 59.538 41.667 0.00 0.00 0.00 4.02
1968 5745 5.643379 TGAGCATTTTTGGACCTTATGAC 57.357 39.130 0.00 0.00 0.00 3.06
1969 5746 6.855763 AATGAGCATTTTTGGACCTTATGA 57.144 33.333 0.00 0.00 0.00 2.15
1970 5747 7.098477 TGAAATGAGCATTTTTGGACCTTATG 58.902 34.615 9.57 0.00 40.77 1.90
1971 5748 7.243604 TGAAATGAGCATTTTTGGACCTTAT 57.756 32.000 9.57 0.00 40.77 1.73
1972 5749 6.662865 TGAAATGAGCATTTTTGGACCTTA 57.337 33.333 9.57 0.00 40.77 2.69
1973 5750 5.549742 TGAAATGAGCATTTTTGGACCTT 57.450 34.783 9.57 0.00 40.77 3.50
1974 5751 5.549742 TTGAAATGAGCATTTTTGGACCT 57.450 34.783 9.57 0.00 40.77 3.85
1975 5752 6.293571 CCTTTTGAAATGAGCATTTTTGGACC 60.294 38.462 9.57 0.00 40.77 4.46
1976 5753 6.482973 TCCTTTTGAAATGAGCATTTTTGGAC 59.517 34.615 9.57 0.00 40.77 4.02
1977 5754 6.590068 TCCTTTTGAAATGAGCATTTTTGGA 58.410 32.000 9.57 9.69 40.77 3.53
1978 5755 6.864360 TCCTTTTGAAATGAGCATTTTTGG 57.136 33.333 9.57 8.00 40.77 3.28
1987 5764 4.397417 CCCTGTAGCTCCTTTTGAAATGAG 59.603 45.833 0.00 4.90 34.87 2.90
1988 5765 4.202567 ACCCTGTAGCTCCTTTTGAAATGA 60.203 41.667 0.00 0.00 0.00 2.57
1989 5766 4.082125 ACCCTGTAGCTCCTTTTGAAATG 58.918 43.478 0.00 0.00 0.00 2.32
1990 5767 4.388577 ACCCTGTAGCTCCTTTTGAAAT 57.611 40.909 0.00 0.00 0.00 2.17
1991 5768 3.876309 ACCCTGTAGCTCCTTTTGAAA 57.124 42.857 0.00 0.00 0.00 2.69
1992 5769 4.986054 TTACCCTGTAGCTCCTTTTGAA 57.014 40.909 0.00 0.00 0.00 2.69
1993 5770 4.986054 TTTACCCTGTAGCTCCTTTTGA 57.014 40.909 0.00 0.00 0.00 2.69
1994 5771 4.142381 GCATTTACCCTGTAGCTCCTTTTG 60.142 45.833 0.00 0.00 0.00 2.44
1995 5772 4.017126 GCATTTACCCTGTAGCTCCTTTT 58.983 43.478 0.00 0.00 0.00 2.27
1996 5773 3.267031 AGCATTTACCCTGTAGCTCCTTT 59.733 43.478 0.00 0.00 0.00 3.11
1997 5774 2.846827 AGCATTTACCCTGTAGCTCCTT 59.153 45.455 0.00 0.00 0.00 3.36
1998 5775 2.482494 AGCATTTACCCTGTAGCTCCT 58.518 47.619 0.00 0.00 0.00 3.69
1999 5776 4.040461 TGATAGCATTTACCCTGTAGCTCC 59.960 45.833 0.00 0.00 33.83 4.70
2000 5777 5.215252 TGATAGCATTTACCCTGTAGCTC 57.785 43.478 0.00 0.00 33.83 4.09
2001 5778 5.072329 ACATGATAGCATTTACCCTGTAGCT 59.928 40.000 0.00 0.00 36.20 3.32
2002 5779 5.308825 ACATGATAGCATTTACCCTGTAGC 58.691 41.667 0.00 0.00 30.68 3.58
2003 5780 6.992123 TGAACATGATAGCATTTACCCTGTAG 59.008 38.462 0.00 0.00 30.68 2.74
2008 5785 5.590259 AGTGTGAACATGATAGCATTTACCC 59.410 40.000 0.00 0.00 30.68 3.69
2061 5840 3.132925 GTGAGTGTAAAACCAACGGCTA 58.867 45.455 0.00 0.00 0.00 3.93
2092 5871 1.405526 GGTGCTCGTGTGGTACATGAT 60.406 52.381 0.00 0.00 42.61 2.45
2192 5972 6.273071 GTCATCTTACAAGCACCAAACTTTT 58.727 36.000 0.00 0.00 0.00 2.27
2307 6088 4.452455 CACCGAAATTCCTGTGATATAGGC 59.548 45.833 4.81 0.00 35.23 3.93
2350 6132 1.995484 CGACTAGTGTGTGCCAATGAG 59.005 52.381 0.00 0.00 0.00 2.90
2355 6137 1.179174 AGCTCGACTAGTGTGTGCCA 61.179 55.000 0.00 0.00 0.00 4.92
2403 6186 1.365699 CGTAAACCAAGACCCGATGG 58.634 55.000 0.00 0.00 42.60 3.51
2407 6190 0.249996 ACACCGTAAACCAAGACCCG 60.250 55.000 0.00 0.00 0.00 5.28
2412 6195 1.790623 CGAGTCACACCGTAAACCAAG 59.209 52.381 0.00 0.00 0.00 3.61
2416 6199 1.494824 AAGCGAGTCACACCGTAAAC 58.505 50.000 0.00 0.00 0.00 2.01
2420 6203 1.300697 GGAAAGCGAGTCACACCGT 60.301 57.895 0.00 0.00 0.00 4.83
2421 6204 1.006102 AGGAAAGCGAGTCACACCG 60.006 57.895 0.00 0.00 0.00 4.94
2429 6212 0.250295 TGTGGTTGGAGGAAAGCGAG 60.250 55.000 0.00 0.00 0.00 5.03
2482 6265 2.541233 ACTCTGAGCCCACTAGACAT 57.459 50.000 4.19 0.00 0.00 3.06
2485 6268 4.317530 TCTAAACTCTGAGCCCACTAGA 57.682 45.455 4.19 1.82 0.00 2.43
2538 6321 1.626686 CCAAACATTACCCAGGTGCA 58.373 50.000 0.00 0.00 0.00 4.57
2543 6326 2.455557 TGATGGCCAAACATTACCCAG 58.544 47.619 10.96 0.00 0.00 4.45
2562 6345 9.177304 GCACTTAATCACATGTCATTTATGATG 57.823 33.333 0.00 0.00 39.30 3.07
2621 6404 1.749634 AGCTGACGTTCGCTAGGTAAT 59.250 47.619 10.33 0.00 34.11 1.89
2627 6410 1.934220 CTCCCAGCTGACGTTCGCTA 61.934 60.000 17.39 0.00 34.58 4.26
2651 6437 0.040425 AAATGACGTTCGCTTGCCAC 60.040 50.000 0.00 0.00 0.00 5.01
2660 6446 2.723124 ATTGCCACCAAATGACGTTC 57.277 45.000 0.00 0.00 34.05 3.95
2665 6451 5.757320 CACAACTAAAATTGCCACCAAATGA 59.243 36.000 0.00 0.00 34.05 2.57
2666 6452 5.757320 TCACAACTAAAATTGCCACCAAATG 59.243 36.000 0.00 0.00 34.05 2.32
2672 6458 4.846779 TCCTCACAACTAAAATTGCCAC 57.153 40.909 0.00 0.00 32.47 5.01
2678 6464 8.579863 CCTTTGATCTTTCCTCACAACTAAAAT 58.420 33.333 0.00 0.00 0.00 1.82
2680 6466 7.228706 GTCCTTTGATCTTTCCTCACAACTAAA 59.771 37.037 0.00 0.00 0.00 1.85
2703 6489 0.179040 TGTTCAGGGTTTGGTCGTCC 60.179 55.000 0.00 0.00 0.00 4.79
2710 6496 3.568430 GGTTAGTCCTTGTTCAGGGTTTG 59.432 47.826 1.13 0.00 44.12 2.93
2711 6497 3.462205 AGGTTAGTCCTTGTTCAGGGTTT 59.538 43.478 1.13 0.00 45.67 3.27
2712 6498 3.053826 AGGTTAGTCCTTGTTCAGGGTT 58.946 45.455 1.13 0.00 45.67 4.11
2713 6499 2.702748 AGGTTAGTCCTTGTTCAGGGT 58.297 47.619 1.13 0.00 45.67 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.