Multiple sequence alignment - TraesCS5B01G266200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G266200 chr5B 100.000 4683 0 0 1 4683 450773116 450768434 0.000000e+00 8648.0
1 TraesCS5B01G266200 chr5B 94.118 136 7 1 43 178 662456395 662456261 6.140000e-49 206.0
2 TraesCS5B01G266200 chr5D 90.804 2153 82 52 166 2276 377486843 377484765 0.000000e+00 2772.0
3 TraesCS5B01G266200 chr5D 93.051 1511 66 20 2357 3860 377484581 377483103 0.000000e+00 2172.0
4 TraesCS5B01G266200 chr5D 82.883 222 37 1 4463 4683 434613613 434613834 1.030000e-46 198.0
5 TraesCS5B01G266200 chr5D 88.889 117 10 2 3960 4073 377483047 377482931 1.760000e-29 141.0
6 TraesCS5B01G266200 chr5D 92.958 71 4 1 2287 2356 377484685 377484615 8.290000e-18 102.0
7 TraesCS5B01G266200 chr5A 89.826 2182 87 58 163 2291 478017747 478015648 0.000000e+00 2675.0
8 TraesCS5B01G266200 chr5A 90.914 1717 72 43 2357 4049 478015513 478013857 0.000000e+00 2230.0
9 TraesCS5B01G266200 chr5A 90.909 77 4 3 2282 2355 478015624 478015548 2.980000e-17 100.0
10 TraesCS5B01G266200 chr5A 97.778 45 1 0 1 45 478017796 478017752 1.400000e-10 78.7
11 TraesCS5B01G266200 chr4B 78.000 500 83 15 4201 4683 368414770 368415259 5.930000e-74 289.0
12 TraesCS5B01G266200 chr3D 77.326 516 84 17 4194 4683 343495304 343495812 1.660000e-69 274.0
13 TraesCS5B01G266200 chr2D 76.880 532 93 17 4179 4683 10245540 10245012 1.660000e-69 274.0
14 TraesCS5B01G266200 chr2D 81.081 222 35 4 4463 4683 53654280 53654495 2.240000e-38 171.0
15 TraesCS5B01G266200 chr7B 75.490 510 96 18 4194 4683 382270604 382270104 6.100000e-54 222.0
16 TraesCS5B01G266200 chr7B 94.574 129 7 0 43 171 668203317 668203189 2.860000e-47 200.0
17 TraesCS5B01G266200 chr4A 84.091 220 33 2 4465 4683 550963045 550963263 1.320000e-50 211.0
18 TraesCS5B01G266200 chr1B 97.541 122 3 0 43 164 417425274 417425153 4.750000e-50 209.0
19 TraesCS5B01G266200 chrUn 96.721 122 4 0 43 164 48417752 48417631 2.210000e-48 204.0
20 TraesCS5B01G266200 chr2B 95.276 127 6 0 43 169 655599873 655599747 7.950000e-48 202.0
21 TraesCS5B01G266200 chr2B 94.574 129 7 0 43 171 185104941 185105069 2.860000e-47 200.0
22 TraesCS5B01G266200 chr2B 94.574 129 7 0 43 171 662686163 662686291 2.860000e-47 200.0
23 TraesCS5B01G266200 chr3B 94.574 129 7 0 43 171 383716612 383716484 2.860000e-47 200.0
24 TraesCS5B01G266200 chr3B 79.263 217 43 2 4468 4683 46355854 46355639 2.920000e-32 150.0
25 TraesCS5B01G266200 chr6B 93.284 134 8 1 33 165 353299503 353299636 3.700000e-46 196.0
26 TraesCS5B01G266200 chr6A 83.854 192 30 1 4465 4655 530990549 530990740 1.040000e-41 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G266200 chr5B 450768434 450773116 4682 True 8648.000 8648 100.00000 1 4683 1 chr5B.!!$R1 4682
1 TraesCS5B01G266200 chr5D 377482931 377486843 3912 True 1296.750 2772 91.42550 166 4073 4 chr5D.!!$R1 3907
2 TraesCS5B01G266200 chr5A 478013857 478017796 3939 True 1270.925 2675 92.35675 1 4049 4 chr5A.!!$R1 4048
3 TraesCS5B01G266200 chr3D 343495304 343495812 508 False 274.000 274 77.32600 4194 4683 1 chr3D.!!$F1 489
4 TraesCS5B01G266200 chr2D 10245012 10245540 528 True 274.000 274 76.88000 4179 4683 1 chr2D.!!$R1 504
5 TraesCS5B01G266200 chr7B 382270104 382270604 500 True 222.000 222 75.49000 4194 4683 1 chr7B.!!$R1 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.179081 CCTCCTCCGTCCCGAAATTC 60.179 60.0 0.00 0.0 0.00 2.17 F
885 906 0.391597 AGGAAAAGGCTGACGTTCGA 59.608 50.0 0.00 0.0 0.00 3.71 F
2025 2080 0.034767 GGGGTAAAAACGAGGGGAGG 60.035 60.0 0.00 0.0 0.00 4.30 F
2118 2173 0.033503 TCTAGGTGTCCGCCTCATGA 60.034 55.0 1.96 0.0 39.94 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1564 0.304705 GCAACGTCCTGTCACACAAG 59.695 55.000 0.0 0.0 0.00 3.16 R
2054 2109 0.723414 AATCTGACATGCTTCGTGCG 59.277 50.000 0.0 0.0 46.63 5.34 R
3199 3381 1.214853 GGTCTTCTTCGTCCCCGTC 59.785 63.158 0.0 0.0 35.01 4.79 R
4108 4317 0.250553 CAGGCGGGTGTGGAGTTTTA 60.251 55.000 0.0 0.0 0.00 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.039137 AGGTTCCTCCTCCGTCCC 59.961 66.667 0.00 0.00 44.42 4.46
52 53 3.459063 GGTTCCTCCTCCGTCCCG 61.459 72.222 0.00 0.00 0.00 5.14
53 54 2.362120 GTTCCTCCTCCGTCCCGA 60.362 66.667 0.00 0.00 0.00 5.14
54 55 1.980772 GTTCCTCCTCCGTCCCGAA 60.981 63.158 0.00 0.00 0.00 4.30
55 56 1.228956 TTCCTCCTCCGTCCCGAAA 60.229 57.895 0.00 0.00 0.00 3.46
56 57 0.616679 TTCCTCCTCCGTCCCGAAAT 60.617 55.000 0.00 0.00 0.00 2.17
57 58 0.616679 TCCTCCTCCGTCCCGAAATT 60.617 55.000 0.00 0.00 0.00 1.82
58 59 0.179081 CCTCCTCCGTCCCGAAATTC 60.179 60.000 0.00 0.00 0.00 2.17
59 60 0.824759 CTCCTCCGTCCCGAAATTCT 59.175 55.000 0.00 0.00 0.00 2.40
60 61 1.207329 CTCCTCCGTCCCGAAATTCTT 59.793 52.381 0.00 0.00 0.00 2.52
61 62 1.066430 TCCTCCGTCCCGAAATTCTTG 60.066 52.381 0.00 0.00 0.00 3.02
62 63 1.338769 CCTCCGTCCCGAAATTCTTGT 60.339 52.381 0.00 0.00 0.00 3.16
63 64 2.000447 CTCCGTCCCGAAATTCTTGTC 59.000 52.381 0.00 0.00 0.00 3.18
64 65 1.621814 TCCGTCCCGAAATTCTTGTCT 59.378 47.619 0.00 0.00 0.00 3.41
65 66 2.038033 TCCGTCCCGAAATTCTTGTCTT 59.962 45.455 0.00 0.00 0.00 3.01
66 67 2.159627 CCGTCCCGAAATTCTTGTCTTG 59.840 50.000 0.00 0.00 0.00 3.02
67 68 2.159627 CGTCCCGAAATTCTTGTCTTGG 59.840 50.000 0.00 0.00 0.00 3.61
68 69 3.408634 GTCCCGAAATTCTTGTCTTGGA 58.591 45.455 0.00 0.00 0.00 3.53
69 70 4.010349 GTCCCGAAATTCTTGTCTTGGAT 58.990 43.478 0.00 0.00 0.00 3.41
70 71 4.459337 GTCCCGAAATTCTTGTCTTGGATT 59.541 41.667 0.00 0.00 0.00 3.01
71 72 5.048013 GTCCCGAAATTCTTGTCTTGGATTT 60.048 40.000 0.00 0.00 0.00 2.17
72 73 5.048083 TCCCGAAATTCTTGTCTTGGATTTG 60.048 40.000 0.00 0.00 0.00 2.32
73 74 5.278957 CCCGAAATTCTTGTCTTGGATTTGT 60.279 40.000 0.00 0.00 0.00 2.83
74 75 5.858581 CCGAAATTCTTGTCTTGGATTTGTC 59.141 40.000 0.00 0.00 0.00 3.18
75 76 6.294176 CCGAAATTCTTGTCTTGGATTTGTCT 60.294 38.462 0.00 0.00 0.00 3.41
76 77 7.094805 CCGAAATTCTTGTCTTGGATTTGTCTA 60.095 37.037 0.00 0.00 0.00 2.59
77 78 7.959651 CGAAATTCTTGTCTTGGATTTGTCTAG 59.040 37.037 0.00 0.00 0.00 2.43
78 79 8.924511 AAATTCTTGTCTTGGATTTGTCTAGA 57.075 30.769 0.00 0.00 0.00 2.43
79 80 9.525826 AAATTCTTGTCTTGGATTTGTCTAGAT 57.474 29.630 0.00 0.00 0.00 1.98
81 82 9.606631 ATTCTTGTCTTGGATTTGTCTAGATAC 57.393 33.333 0.00 0.00 0.00 2.24
82 83 7.258441 TCTTGTCTTGGATTTGTCTAGATACG 58.742 38.462 0.00 0.00 0.00 3.06
83 84 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
84 85 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
85 86 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
86 87 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
87 88 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
88 89 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
89 90 6.978338 TGGATTTGTCTAGATACGGATGTAC 58.022 40.000 0.00 0.00 32.26 2.90
90 91 6.015688 TGGATTTGTCTAGATACGGATGTACC 60.016 42.308 0.00 0.00 32.26 3.34
91 92 6.208994 GGATTTGTCTAGATACGGATGTACCT 59.791 42.308 0.00 0.00 36.31 3.08
92 93 7.392673 GGATTTGTCTAGATACGGATGTACCTA 59.607 40.741 0.00 0.00 36.31 3.08
93 94 8.701908 ATTTGTCTAGATACGGATGTACCTAA 57.298 34.615 0.00 0.00 36.31 2.69
94 95 8.701908 TTTGTCTAGATACGGATGTACCTAAT 57.298 34.615 0.00 0.00 36.31 1.73
95 96 9.797642 TTTGTCTAGATACGGATGTACCTAATA 57.202 33.333 0.00 0.00 36.31 0.98
96 97 8.783833 TGTCTAGATACGGATGTACCTAATAC 57.216 38.462 0.00 0.00 36.31 1.89
97 98 8.600668 TGTCTAGATACGGATGTACCTAATACT 58.399 37.037 0.00 0.00 34.56 2.12
103 104 9.334693 GATACGGATGTACCTAATACTAAAACG 57.665 37.037 0.00 0.00 34.56 3.60
104 105 7.100458 ACGGATGTACCTAATACTAAAACGT 57.900 36.000 0.00 0.00 34.56 3.99
105 106 6.974622 ACGGATGTACCTAATACTAAAACGTG 59.025 38.462 0.00 0.00 34.56 4.49
106 107 7.148086 ACGGATGTACCTAATACTAAAACGTGA 60.148 37.037 0.00 0.00 34.56 4.35
107 108 7.166473 CGGATGTACCTAATACTAAAACGTGAC 59.834 40.741 0.00 0.00 34.56 3.67
108 109 8.193438 GGATGTACCTAATACTAAAACGTGACT 58.807 37.037 0.00 0.00 34.56 3.41
109 110 9.578439 GATGTACCTAATACTAAAACGTGACTT 57.422 33.333 0.00 0.00 34.56 3.01
110 111 8.970691 TGTACCTAATACTAAAACGTGACTTC 57.029 34.615 0.00 0.00 34.56 3.01
111 112 8.575589 TGTACCTAATACTAAAACGTGACTTCA 58.424 33.333 0.00 0.00 34.56 3.02
112 113 9.578439 GTACCTAATACTAAAACGTGACTTCAT 57.422 33.333 0.00 0.00 0.00 2.57
114 115 9.578439 ACCTAATACTAAAACGTGACTTCATAC 57.422 33.333 0.00 0.00 0.00 2.39
115 116 9.577110 CCTAATACTAAAACGTGACTTCATACA 57.423 33.333 0.00 0.00 0.00 2.29
118 119 9.871238 AATACTAAAACGTGACTTCATACATCT 57.129 29.630 0.00 0.00 0.00 2.90
119 120 7.582435 ACTAAAACGTGACTTCATACATCTG 57.418 36.000 0.00 0.00 0.00 2.90
120 121 7.152645 ACTAAAACGTGACTTCATACATCTGT 58.847 34.615 0.00 0.00 0.00 3.41
121 122 8.301720 ACTAAAACGTGACTTCATACATCTGTA 58.698 33.333 0.00 0.00 34.67 2.74
122 123 9.302345 CTAAAACGTGACTTCATACATCTGTAT 57.698 33.333 0.00 0.00 41.58 2.29
123 124 8.547967 AAAACGTGACTTCATACATCTGTATT 57.452 30.769 0.06 0.00 39.06 1.89
124 125 8.547967 AAACGTGACTTCATACATCTGTATTT 57.452 30.769 0.06 0.00 39.06 1.40
125 126 7.525688 ACGTGACTTCATACATCTGTATTTG 57.474 36.000 0.06 0.00 39.06 2.32
126 127 6.535150 ACGTGACTTCATACATCTGTATTTGG 59.465 38.462 0.06 0.00 39.06 3.28
127 128 6.756542 CGTGACTTCATACATCTGTATTTGGA 59.243 38.462 0.06 0.00 39.06 3.53
128 129 7.254117 CGTGACTTCATACATCTGTATTTGGAC 60.254 40.741 0.06 0.00 39.06 4.02
129 130 7.549134 GTGACTTCATACATCTGTATTTGGACA 59.451 37.037 0.06 0.00 39.06 4.02
130 131 8.100164 TGACTTCATACATCTGTATTTGGACAA 58.900 33.333 0.06 0.00 39.06 3.18
131 132 8.862325 ACTTCATACATCTGTATTTGGACAAA 57.138 30.769 0.00 0.00 39.06 2.83
132 133 9.466497 ACTTCATACATCTGTATTTGGACAAAT 57.534 29.630 14.02 14.02 42.95 2.32
133 134 9.941664 CTTCATACATCTGTATTTGGACAAATC 57.058 33.333 13.07 6.84 40.99 2.17
134 135 9.685276 TTCATACATCTGTATTTGGACAAATCT 57.315 29.630 13.07 0.00 40.99 2.40
139 140 9.167311 ACATCTGTATTTGGACAAATCTAAGAC 57.833 33.333 13.07 7.02 40.99 3.01
140 141 9.166173 CATCTGTATTTGGACAAATCTAAGACA 57.834 33.333 13.07 10.66 40.99 3.41
141 142 9.739276 ATCTGTATTTGGACAAATCTAAGACAA 57.261 29.630 13.07 4.95 40.99 3.18
142 143 9.219603 TCTGTATTTGGACAAATCTAAGACAAG 57.780 33.333 13.07 6.98 40.99 3.16
143 144 9.219603 CTGTATTTGGACAAATCTAAGACAAGA 57.780 33.333 13.07 0.00 40.99 3.02
144 145 9.567776 TGTATTTGGACAAATCTAAGACAAGAA 57.432 29.630 13.07 0.00 40.99 2.52
149 150 9.748708 TTGGACAAATCTAAGACAAGAATTTTG 57.251 29.630 0.00 0.00 34.13 2.44
150 151 8.359642 TGGACAAATCTAAGACAAGAATTTTGG 58.640 33.333 0.00 0.00 33.04 3.28
151 152 7.814587 GGACAAATCTAAGACAAGAATTTTGGG 59.185 37.037 0.00 0.00 33.04 4.12
152 153 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
153 154 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
154 155 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
155 156 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
156 157 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
157 158 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
158 159 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
159 160 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
160 161 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
161 162 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
170 171 2.767960 GGGACGGAGGGAGTACAAAATA 59.232 50.000 0.00 0.00 0.00 1.40
189 190 8.199449 ACAAAATAGATGCAAATATTGGTCTGG 58.801 33.333 7.35 0.00 0.00 3.86
198 199 1.920734 TATTGGTCTGGCATGGGCGT 61.921 55.000 0.00 0.00 42.47 5.68
201 202 2.731571 GGTCTGGCATGGGCGTCTA 61.732 63.158 0.00 0.00 42.47 2.59
202 203 1.220749 GTCTGGCATGGGCGTCTAA 59.779 57.895 0.00 0.00 42.47 2.10
205 206 0.947244 CTGGCATGGGCGTCTAATTC 59.053 55.000 0.00 0.00 42.47 2.17
243 245 8.989653 TTTAGGAACAGTTGGTTTAAAACTTG 57.010 30.769 4.60 3.48 40.63 3.16
251 253 5.127519 AGTTGGTTTAAAACTTGGGTGTACC 59.872 40.000 4.60 0.00 34.16 3.34
325 335 6.255887 CCAGAACAAAGATTGACGGTAGATAC 59.744 42.308 0.00 0.00 0.00 2.24
349 361 4.566759 GCACTCGTAGATTCATTTGCAGTA 59.433 41.667 0.00 0.00 33.89 2.74
366 378 3.005791 GCAGTAAAAACAGGAGGTTGCAT 59.994 43.478 0.00 0.00 40.35 3.96
401 413 0.668706 CCTGTCAGTCAGCGAACCAG 60.669 60.000 0.00 0.00 42.38 4.00
409 421 2.164624 AGTCAGCGAACCAGATAGACAC 59.835 50.000 0.00 0.00 0.00 3.67
410 422 1.476891 TCAGCGAACCAGATAGACACC 59.523 52.381 0.00 0.00 0.00 4.16
411 423 0.456221 AGCGAACCAGATAGACACCG 59.544 55.000 0.00 0.00 0.00 4.94
412 424 1.146358 GCGAACCAGATAGACACCGC 61.146 60.000 0.00 0.00 34.71 5.68
432 444 1.202336 CCCGCTTGCCAGATTCAAATC 60.202 52.381 0.00 0.00 35.64 2.17
441 453 7.421087 TTGCCAGATTCAAATCATTTCCATA 57.579 32.000 5.59 0.00 37.89 2.74
443 455 6.608405 TGCCAGATTCAAATCATTTCCATACT 59.392 34.615 5.59 0.00 37.89 2.12
489 501 1.889105 CATCAGGCGTTCCGATGGG 60.889 63.158 0.00 0.00 38.52 4.00
490 502 2.367202 ATCAGGCGTTCCGATGGGT 61.367 57.895 0.00 0.00 37.47 4.51
491 503 2.311688 ATCAGGCGTTCCGATGGGTC 62.312 60.000 0.00 0.00 37.47 4.46
492 504 3.000819 AGGCGTTCCGATGGGTCA 61.001 61.111 0.00 0.00 37.47 4.02
493 505 2.511600 GGCGTTCCGATGGGTCAG 60.512 66.667 0.00 0.00 33.83 3.51
494 506 2.577059 GCGTTCCGATGGGTCAGA 59.423 61.111 0.00 0.00 33.83 3.27
495 507 1.810030 GCGTTCCGATGGGTCAGAC 60.810 63.158 0.00 0.00 33.83 3.51
525 542 2.289320 GGATCTAGCCATGACGCTGAAT 60.289 50.000 6.71 0.87 40.08 2.57
530 547 5.182487 TCTAGCCATGACGCTGAATTTTTA 58.818 37.500 6.71 0.00 40.08 1.52
531 548 4.361451 AGCCATGACGCTGAATTTTTAG 57.639 40.909 0.00 0.00 37.82 1.85
554 572 1.736645 TTTAGCTCAGTGACGCGCC 60.737 57.895 5.73 0.00 0.00 6.53
567 585 2.255252 GCGCCGCAACAGTTCAAT 59.745 55.556 3.15 0.00 0.00 2.57
572 590 1.535860 GCCGCAACAGTTCAATTGTGT 60.536 47.619 5.13 0.00 35.08 3.72
573 591 2.384382 CCGCAACAGTTCAATTGTGTC 58.616 47.619 5.13 0.00 35.08 3.67
612 630 2.380410 GCACGTCAGGCTAACGGTG 61.380 63.158 15.73 11.19 44.21 4.94
715 736 1.830408 CCTCCCTCTACGGCTCCAG 60.830 68.421 0.00 0.00 0.00 3.86
716 737 1.076632 CTCCCTCTACGGCTCCAGT 60.077 63.158 0.00 0.00 0.00 4.00
717 738 1.379977 TCCCTCTACGGCTCCAGTG 60.380 63.158 0.00 0.00 0.00 3.66
718 739 2.496817 CCTCTACGGCTCCAGTGC 59.503 66.667 0.00 0.00 0.00 4.40
719 740 2.055042 CCTCTACGGCTCCAGTGCT 61.055 63.158 0.00 0.00 0.00 4.40
720 741 1.435515 CTCTACGGCTCCAGTGCTC 59.564 63.158 0.00 0.00 0.00 4.26
721 742 2.010582 CTCTACGGCTCCAGTGCTCC 62.011 65.000 0.00 0.00 0.00 4.70
722 743 2.283604 TACGGCTCCAGTGCTCCA 60.284 61.111 0.00 0.00 0.00 3.86
881 902 1.954382 GGAAAAGGAAAAGGCTGACGT 59.046 47.619 0.00 0.00 0.00 4.34
882 903 2.361119 GGAAAAGGAAAAGGCTGACGTT 59.639 45.455 0.00 0.00 0.00 3.99
883 904 3.550233 GGAAAAGGAAAAGGCTGACGTTC 60.550 47.826 0.00 0.00 0.00 3.95
884 905 1.226746 AAGGAAAAGGCTGACGTTCG 58.773 50.000 0.00 0.00 0.00 3.95
885 906 0.391597 AGGAAAAGGCTGACGTTCGA 59.608 50.000 0.00 0.00 0.00 3.71
886 907 0.511653 GGAAAAGGCTGACGTTCGAC 59.488 55.000 0.00 0.00 0.00 4.20
1508 1551 5.957842 TTCCAGAGCACGATGTTTATTTT 57.042 34.783 0.00 0.00 0.00 1.82
1510 1553 5.698832 TCCAGAGCACGATGTTTATTTTTG 58.301 37.500 0.00 0.00 0.00 2.44
1512 1555 5.920273 CCAGAGCACGATGTTTATTTTTGTT 59.080 36.000 0.00 0.00 0.00 2.83
1513 1556 7.041030 TCCAGAGCACGATGTTTATTTTTGTTA 60.041 33.333 0.00 0.00 0.00 2.41
1515 1558 9.767684 CAGAGCACGATGTTTATTTTTGTTATA 57.232 29.630 0.00 0.00 0.00 0.98
1737 1792 2.125350 GCCAAGGAGGAGCTGTCG 60.125 66.667 0.00 0.00 41.22 4.35
1740 1795 3.394836 AAGGAGGAGCTGTCGGGC 61.395 66.667 0.00 0.00 0.00 6.13
1914 1969 1.227263 CATCAGAGTTACCGCCCCG 60.227 63.158 0.00 0.00 0.00 5.73
1947 2002 0.905337 CGTCCTGTCCCTTCCCTTCT 60.905 60.000 0.00 0.00 0.00 2.85
1954 2009 2.112691 TGTCCCTTCCCTTCTCTTCTCT 59.887 50.000 0.00 0.00 0.00 3.10
1967 2022 2.154798 CTTCTCTTCACCGTCGGCCA 62.155 60.000 12.28 0.00 0.00 5.36
1973 2028 3.379445 CACCGTCGGCCACTACCT 61.379 66.667 12.28 0.00 0.00 3.08
1991 2046 2.034558 ACCTGCCATGTCAAAACTTTCG 59.965 45.455 0.00 0.00 0.00 3.46
1999 2054 6.513720 GCCATGTCAAAACTTTCGGTTTACTA 60.514 38.462 0.00 0.00 46.18 1.82
2001 2056 7.749126 CCATGTCAAAACTTTCGGTTTACTATC 59.251 37.037 0.00 0.00 46.18 2.08
2025 2080 0.034767 GGGGTAAAAACGAGGGGAGG 60.035 60.000 0.00 0.00 0.00 4.30
2054 2109 2.723209 GTACACGGTGAAAACCAAAGC 58.277 47.619 16.29 0.00 0.00 3.51
2073 2128 0.723414 CGCACGAAGCATGTCAGATT 59.277 50.000 0.00 0.00 46.13 2.40
2108 2163 0.853419 GCGCGCTTAATCTAGGTGTC 59.147 55.000 26.67 0.00 0.00 3.67
2111 2166 1.488527 CGCTTAATCTAGGTGTCCGC 58.511 55.000 0.00 0.00 0.00 5.54
2113 2168 1.413077 GCTTAATCTAGGTGTCCGCCT 59.587 52.381 4.58 4.58 42.43 5.52
2114 2169 2.546162 GCTTAATCTAGGTGTCCGCCTC 60.546 54.545 1.96 0.00 39.94 4.70
2115 2170 2.447408 TAATCTAGGTGTCCGCCTCA 57.553 50.000 1.96 0.00 39.94 3.86
2116 2171 1.794714 AATCTAGGTGTCCGCCTCAT 58.205 50.000 1.96 0.00 39.94 2.90
2117 2172 1.043816 ATCTAGGTGTCCGCCTCATG 58.956 55.000 1.96 0.00 39.94 3.07
2118 2173 0.033503 TCTAGGTGTCCGCCTCATGA 60.034 55.000 1.96 0.00 39.94 3.07
2119 2174 1.043816 CTAGGTGTCCGCCTCATGAT 58.956 55.000 1.96 0.00 39.94 2.45
2120 2175 2.158519 TCTAGGTGTCCGCCTCATGATA 60.159 50.000 1.96 0.00 39.94 2.15
2121 2176 0.753262 AGGTGTCCGCCTCATGATAC 59.247 55.000 0.00 0.00 32.39 2.24
2122 2177 0.597637 GGTGTCCGCCTCATGATACG 60.598 60.000 9.83 9.83 0.00 3.06
2123 2178 0.597637 GTGTCCGCCTCATGATACGG 60.598 60.000 23.73 23.73 46.97 4.02
2124 2179 1.664965 GTCCGCCTCATGATACGGC 60.665 63.158 24.50 19.35 45.23 5.68
2125 2180 2.357517 CCGCCTCATGATACGGCC 60.358 66.667 19.82 0.00 40.70 6.13
2376 2554 1.512310 CGTTCGAGCTCGTGTCTCC 60.512 63.158 33.33 15.43 40.80 3.71
2388 2566 2.046864 TGTCTCCCGCGGAAGAGAG 61.047 63.158 27.81 23.74 39.74 3.20
2399 2577 2.887337 CGGAAGAGAGGAGAGAAAAGC 58.113 52.381 0.00 0.00 0.00 3.51
2400 2578 2.232452 CGGAAGAGAGGAGAGAAAAGCA 59.768 50.000 0.00 0.00 0.00 3.91
2401 2579 3.675775 CGGAAGAGAGGAGAGAAAAGCAG 60.676 52.174 0.00 0.00 0.00 4.24
2402 2580 3.261580 GAAGAGAGGAGAGAAAAGCAGC 58.738 50.000 0.00 0.00 0.00 5.25
2403 2581 1.554617 AGAGAGGAGAGAAAAGCAGCC 59.445 52.381 0.00 0.00 0.00 4.85
2422 2600 3.437795 CTGCTTTCTGCGGGCTGG 61.438 66.667 0.00 0.00 46.63 4.85
2424 2602 2.439156 GCTTTCTGCGGGCTGGAT 60.439 61.111 0.00 0.00 0.00 3.41
2425 2603 2.768492 GCTTTCTGCGGGCTGGATG 61.768 63.158 0.00 0.00 0.00 3.51
2426 2604 2.045045 TTTCTGCGGGCTGGATGG 60.045 61.111 0.00 0.00 0.00 3.51
2427 2605 2.541547 CTTTCTGCGGGCTGGATGGA 62.542 60.000 0.00 0.00 0.00 3.41
2439 2617 2.934364 GCTGGATGGACGGATGATGATC 60.934 54.545 0.00 0.00 0.00 2.92
2577 2759 0.877743 CTCGAGATGCTGCGGAGATA 59.122 55.000 8.65 0.00 0.00 1.98
2950 3132 4.286320 CCGAGCGGCGCTAATCCT 62.286 66.667 36.55 12.49 39.88 3.24
2953 3135 4.286320 AGCGGCGCTAATCCTCCG 62.286 66.667 35.68 0.00 44.29 4.63
3111 3293 2.364448 GAGGAAGGAGGAGGCCGT 60.364 66.667 0.00 0.00 0.00 5.68
3163 3345 2.574399 GACGGCGAGAAGAAGGCT 59.426 61.111 16.62 0.00 0.00 4.58
3307 3495 1.153469 GGCGGCTGAGAAGAAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
3473 3661 2.197324 CGGAGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
3702 3891 1.861575 GTCGCATTGGAGTAGCTTAGC 59.138 52.381 0.00 0.00 0.00 3.09
3736 3928 7.623089 GCCGGTAGAGATTACGTACTAGTATTG 60.623 44.444 5.75 4.80 0.00 1.90
3776 3968 6.480524 TTCAGCTGTGTGTAAATCATGTAC 57.519 37.500 14.67 0.00 0.00 2.90
3777 3969 5.793817 TCAGCTGTGTGTAAATCATGTACT 58.206 37.500 14.67 0.00 0.00 2.73
3778 3970 6.930731 TCAGCTGTGTGTAAATCATGTACTA 58.069 36.000 14.67 0.00 0.00 1.82
3850 4045 7.103641 ACATGTTGTAATCGGACTAACAGATT 58.896 34.615 0.00 0.00 43.49 2.40
3856 4051 5.741388 AATCGGACTAACAGATTGAATGC 57.259 39.130 0.00 0.00 40.67 3.56
3865 4060 0.181350 AGATTGAATGCCGTCCCTCC 59.819 55.000 0.00 0.00 0.00 4.30
3867 4062 2.284515 ATTGAATGCCGTCCCTCCCC 62.285 60.000 0.00 0.00 0.00 4.81
3870 4065 4.760220 ATGCCGTCCCTCCCCCTT 62.760 66.667 0.00 0.00 0.00 3.95
3942 4148 3.309052 GAGCTGCATCCAGATCCAG 57.691 57.895 1.02 0.00 46.20 3.86
3943 4149 0.757512 GAGCTGCATCCAGATCCAGA 59.242 55.000 2.67 0.00 46.20 3.86
3944 4150 0.759959 AGCTGCATCCAGATCCAGAG 59.240 55.000 2.67 0.00 41.77 3.35
3945 4151 0.757512 GCTGCATCCAGATCCAGAGA 59.242 55.000 2.67 0.00 41.77 3.10
3946 4152 1.540797 GCTGCATCCAGATCCAGAGAC 60.541 57.143 2.67 0.00 41.77 3.36
3947 4153 0.749049 TGCATCCAGATCCAGAGACG 59.251 55.000 0.00 0.00 0.00 4.18
3948 4154 1.035923 GCATCCAGATCCAGAGACGA 58.964 55.000 0.00 0.00 0.00 4.20
3949 4155 1.269517 GCATCCAGATCCAGAGACGAC 60.270 57.143 0.00 0.00 0.00 4.34
3950 4156 1.001924 CATCCAGATCCAGAGACGACG 60.002 57.143 0.00 0.00 0.00 5.12
3951 4157 1.064946 CCAGATCCAGAGACGACGC 59.935 63.158 0.00 0.00 0.00 5.19
3952 4158 1.297967 CAGATCCAGAGACGACGCG 60.298 63.158 3.53 3.53 0.00 6.01
3953 4159 2.024871 GATCCAGAGACGACGCGG 59.975 66.667 12.47 0.00 0.00 6.46
3954 4160 2.437895 ATCCAGAGACGACGCGGA 60.438 61.111 12.47 0.00 0.00 5.54
3958 4164 3.432588 AGAGACGACGCGGAGGTG 61.433 66.667 12.47 0.00 0.00 4.00
4005 4211 2.227089 GAGTGGAGGGTTCACGCGAT 62.227 60.000 15.93 0.00 39.86 4.58
4013 4219 0.802607 GGTTCACGCGATGACCTCTC 60.803 60.000 15.93 1.67 36.92 3.20
4024 4230 4.260538 GCGATGACCTCTCAAATAAGCAAG 60.261 45.833 0.00 0.00 0.00 4.01
4059 4268 9.661563 TTGTTTTTCTAGTCTAGTGAAGAAACA 57.338 29.630 6.77 12.87 37.61 2.83
4073 4282 2.073816 AGAAACATAGTTTGGCGACGG 58.926 47.619 0.00 0.00 0.00 4.79
4074 4283 0.519961 AAACATAGTTTGGCGACGGC 59.480 50.000 15.43 15.43 38.90 5.68
4075 4284 1.632046 AACATAGTTTGGCGACGGCG 61.632 55.000 17.16 6.12 41.24 6.46
4076 4285 1.807981 CATAGTTTGGCGACGGCGA 60.808 57.895 18.90 12.56 41.24 5.54
4077 4286 1.518572 ATAGTTTGGCGACGGCGAG 60.519 57.895 18.90 8.50 41.24 5.03
4078 4287 2.221906 ATAGTTTGGCGACGGCGAGT 62.222 55.000 18.90 12.67 41.24 4.18
4079 4288 4.072088 GTTTGGCGACGGCGAGTG 62.072 66.667 18.90 3.31 41.24 3.51
4080 4289 4.595538 TTTGGCGACGGCGAGTGT 62.596 61.111 18.90 0.00 41.24 3.55
4085 4294 3.394874 CGACGGCGAGTGTGTGTG 61.395 66.667 16.62 0.00 40.82 3.82
4086 4295 3.702555 GACGGCGAGTGTGTGTGC 61.703 66.667 16.62 0.00 0.00 4.57
4087 4296 4.221422 ACGGCGAGTGTGTGTGCT 62.221 61.111 16.62 0.00 0.00 4.40
4088 4297 3.406361 CGGCGAGTGTGTGTGCTC 61.406 66.667 0.00 0.00 0.00 4.26
4091 4300 2.658268 CGAGTGTGTGTGCTCGCA 60.658 61.111 0.00 0.00 46.01 5.10
4092 4301 2.237066 CGAGTGTGTGTGCTCGCAA 61.237 57.895 3.18 0.00 46.01 4.85
4093 4302 1.560004 CGAGTGTGTGTGCTCGCAAT 61.560 55.000 3.18 0.00 46.01 3.56
4094 4303 0.588252 GAGTGTGTGTGCTCGCAATT 59.412 50.000 3.18 0.00 35.78 2.32
4095 4304 1.798223 GAGTGTGTGTGCTCGCAATTA 59.202 47.619 3.18 0.00 35.78 1.40
4096 4305 1.800586 AGTGTGTGTGCTCGCAATTAG 59.199 47.619 3.18 0.00 35.78 1.73
4097 4306 1.531149 GTGTGTGTGCTCGCAATTAGT 59.469 47.619 3.18 0.00 35.78 2.24
4098 4307 1.798223 TGTGTGTGCTCGCAATTAGTC 59.202 47.619 3.18 0.00 35.78 2.59
4099 4308 2.069273 GTGTGTGCTCGCAATTAGTCT 58.931 47.619 3.18 0.00 35.78 3.24
4100 4309 2.092838 GTGTGTGCTCGCAATTAGTCTC 59.907 50.000 3.18 0.00 35.78 3.36
4101 4310 1.661112 GTGTGCTCGCAATTAGTCTCC 59.339 52.381 0.00 0.00 0.00 3.71
4102 4311 0.924090 GTGCTCGCAATTAGTCTCCG 59.076 55.000 0.00 0.00 0.00 4.63
4103 4312 0.530744 TGCTCGCAATTAGTCTCCGT 59.469 50.000 0.00 0.00 0.00 4.69
4104 4313 1.746787 TGCTCGCAATTAGTCTCCGTA 59.253 47.619 0.00 0.00 0.00 4.02
4105 4314 2.223502 TGCTCGCAATTAGTCTCCGTAG 60.224 50.000 0.00 0.00 0.00 3.51
4106 4315 2.033049 GCTCGCAATTAGTCTCCGTAGA 59.967 50.000 0.00 0.00 0.00 2.59
4107 4316 3.850374 GCTCGCAATTAGTCTCCGTAGAG 60.850 52.174 0.00 0.00 41.93 2.43
4108 4317 3.276857 TCGCAATTAGTCTCCGTAGAGT 58.723 45.455 0.00 0.00 41.26 3.24
4109 4318 4.445453 TCGCAATTAGTCTCCGTAGAGTA 58.555 43.478 0.00 0.00 41.26 2.59
4110 4319 4.877823 TCGCAATTAGTCTCCGTAGAGTAA 59.122 41.667 7.64 7.64 46.65 2.24
4111 4320 5.355071 TCGCAATTAGTCTCCGTAGAGTAAA 59.645 40.000 9.09 0.00 46.04 2.01
4112 4321 6.032094 CGCAATTAGTCTCCGTAGAGTAAAA 58.968 40.000 9.09 0.00 46.04 1.52
4113 4322 6.020837 CGCAATTAGTCTCCGTAGAGTAAAAC 60.021 42.308 9.09 2.33 46.04 2.43
4114 4323 7.034397 GCAATTAGTCTCCGTAGAGTAAAACT 58.966 38.462 9.09 0.00 46.04 2.66
4115 4324 7.220491 GCAATTAGTCTCCGTAGAGTAAAACTC 59.780 40.741 9.09 0.00 46.04 3.01
4116 4325 6.749923 TTAGTCTCCGTAGAGTAAAACTCC 57.250 41.667 3.03 0.00 46.18 3.85
4117 4326 4.660168 AGTCTCCGTAGAGTAAAACTCCA 58.340 43.478 3.49 0.00 46.18 3.86
4118 4327 4.458642 AGTCTCCGTAGAGTAAAACTCCAC 59.541 45.833 3.49 0.00 46.18 4.02
4119 4328 4.217118 GTCTCCGTAGAGTAAAACTCCACA 59.783 45.833 3.49 0.00 46.18 4.17
4120 4329 4.217118 TCTCCGTAGAGTAAAACTCCACAC 59.783 45.833 3.49 0.03 46.18 3.82
4121 4330 3.256631 TCCGTAGAGTAAAACTCCACACC 59.743 47.826 3.49 0.00 46.18 4.16
4122 4331 3.582780 CGTAGAGTAAAACTCCACACCC 58.417 50.000 3.49 0.00 46.18 4.61
4123 4332 2.833631 AGAGTAAAACTCCACACCCG 57.166 50.000 3.49 0.00 46.18 5.28
4124 4333 1.154197 GAGTAAAACTCCACACCCGC 58.846 55.000 0.00 0.00 39.28 6.13
4125 4334 0.250597 AGTAAAACTCCACACCCGCC 60.251 55.000 0.00 0.00 0.00 6.13
4126 4335 0.250597 GTAAAACTCCACACCCGCCT 60.251 55.000 0.00 0.00 0.00 5.52
4127 4336 0.250553 TAAAACTCCACACCCGCCTG 60.251 55.000 0.00 0.00 0.00 4.85
4128 4337 4.643387 AACTCCACACCCGCCTGC 62.643 66.667 0.00 0.00 0.00 4.85
4130 4339 4.335647 CTCCACACCCGCCTGCTT 62.336 66.667 0.00 0.00 0.00 3.91
4131 4340 3.850098 CTCCACACCCGCCTGCTTT 62.850 63.158 0.00 0.00 0.00 3.51
4132 4341 3.673484 CCACACCCGCCTGCTTTG 61.673 66.667 0.00 0.00 0.00 2.77
4133 4342 2.594303 CACACCCGCCTGCTTTGA 60.594 61.111 0.00 0.00 0.00 2.69
4134 4343 2.281761 ACACCCGCCTGCTTTGAG 60.282 61.111 0.00 0.00 0.00 3.02
4135 4344 3.741476 CACCCGCCTGCTTTGAGC 61.741 66.667 0.00 0.00 42.82 4.26
4136 4345 3.958860 ACCCGCCTGCTTTGAGCT 61.959 61.111 1.29 0.00 42.97 4.09
4137 4346 2.674380 CCCGCCTGCTTTGAGCTT 60.674 61.111 1.29 0.00 42.97 3.74
4138 4347 2.270986 CCCGCCTGCTTTGAGCTTT 61.271 57.895 1.29 0.00 42.97 3.51
4139 4348 1.080974 CCGCCTGCTTTGAGCTTTG 60.081 57.895 1.29 0.00 42.97 2.77
4140 4349 1.656441 CGCCTGCTTTGAGCTTTGT 59.344 52.632 1.29 0.00 42.97 2.83
4141 4350 0.386478 CGCCTGCTTTGAGCTTTGTC 60.386 55.000 1.29 0.00 42.97 3.18
4142 4351 0.386478 GCCTGCTTTGAGCTTTGTCG 60.386 55.000 1.29 0.00 42.97 4.35
4143 4352 1.229428 CCTGCTTTGAGCTTTGTCGA 58.771 50.000 1.29 0.00 42.97 4.20
4144 4353 1.808945 CCTGCTTTGAGCTTTGTCGAT 59.191 47.619 1.29 0.00 42.97 3.59
4145 4354 2.413765 CCTGCTTTGAGCTTTGTCGATG 60.414 50.000 1.29 0.00 42.97 3.84
4146 4355 2.221169 TGCTTTGAGCTTTGTCGATGT 58.779 42.857 1.29 0.00 42.97 3.06
4147 4356 2.031769 TGCTTTGAGCTTTGTCGATGTG 60.032 45.455 1.29 0.00 42.97 3.21
4148 4357 2.224079 GCTTTGAGCTTTGTCGATGTGA 59.776 45.455 0.00 0.00 38.45 3.58
4149 4358 3.666374 GCTTTGAGCTTTGTCGATGTGAG 60.666 47.826 0.00 0.00 38.45 3.51
4150 4359 3.385193 TTGAGCTTTGTCGATGTGAGA 57.615 42.857 0.00 0.00 0.00 3.27
4151 4360 2.951726 TGAGCTTTGTCGATGTGAGAG 58.048 47.619 0.00 0.00 0.00 3.20
4152 4361 1.658095 GAGCTTTGTCGATGTGAGAGC 59.342 52.381 0.00 0.00 0.00 4.09
4153 4362 1.274728 AGCTTTGTCGATGTGAGAGCT 59.725 47.619 0.00 0.00 35.11 4.09
4154 4363 2.072298 GCTTTGTCGATGTGAGAGCTT 58.928 47.619 0.00 0.00 0.00 3.74
4155 4364 2.481952 GCTTTGTCGATGTGAGAGCTTT 59.518 45.455 0.00 0.00 0.00 3.51
4156 4365 3.058639 GCTTTGTCGATGTGAGAGCTTTT 60.059 43.478 0.00 0.00 0.00 2.27
4157 4366 4.461405 CTTTGTCGATGTGAGAGCTTTTG 58.539 43.478 0.00 0.00 0.00 2.44
4158 4367 3.111853 TGTCGATGTGAGAGCTTTTGT 57.888 42.857 0.00 0.00 0.00 2.83
4159 4368 3.466836 TGTCGATGTGAGAGCTTTTGTT 58.533 40.909 0.00 0.00 0.00 2.83
4160 4369 3.494626 TGTCGATGTGAGAGCTTTTGTTC 59.505 43.478 0.00 0.00 0.00 3.18
4161 4370 3.067106 TCGATGTGAGAGCTTTTGTTCC 58.933 45.455 0.00 0.00 0.00 3.62
4162 4371 2.160417 CGATGTGAGAGCTTTTGTTCCC 59.840 50.000 0.00 0.00 0.00 3.97
4163 4372 3.416156 GATGTGAGAGCTTTTGTTCCCT 58.584 45.455 0.00 0.00 0.00 4.20
4164 4373 3.297134 TGTGAGAGCTTTTGTTCCCTT 57.703 42.857 0.00 0.00 0.00 3.95
4165 4374 3.631250 TGTGAGAGCTTTTGTTCCCTTT 58.369 40.909 0.00 0.00 0.00 3.11
4166 4375 4.023291 TGTGAGAGCTTTTGTTCCCTTTT 58.977 39.130 0.00 0.00 0.00 2.27
4167 4376 4.466015 TGTGAGAGCTTTTGTTCCCTTTTT 59.534 37.500 0.00 0.00 0.00 1.94
4168 4377 5.043903 GTGAGAGCTTTTGTTCCCTTTTTC 58.956 41.667 0.00 0.00 0.00 2.29
4169 4378 4.956075 TGAGAGCTTTTGTTCCCTTTTTCT 59.044 37.500 0.00 0.00 0.00 2.52
4170 4379 5.422012 TGAGAGCTTTTGTTCCCTTTTTCTT 59.578 36.000 0.00 0.00 0.00 2.52
4171 4380 6.070824 TGAGAGCTTTTGTTCCCTTTTTCTTT 60.071 34.615 0.00 0.00 0.00 2.52
4172 4381 6.711277 AGAGCTTTTGTTCCCTTTTTCTTTT 58.289 32.000 0.00 0.00 0.00 2.27
4173 4382 6.595326 AGAGCTTTTGTTCCCTTTTTCTTTTG 59.405 34.615 0.00 0.00 0.00 2.44
4174 4383 6.472016 AGCTTTTGTTCCCTTTTTCTTTTGA 58.528 32.000 0.00 0.00 0.00 2.69
4175 4384 6.371548 AGCTTTTGTTCCCTTTTTCTTTTGAC 59.628 34.615 0.00 0.00 0.00 3.18
4176 4385 6.403200 GCTTTTGTTCCCTTTTTCTTTTGACC 60.403 38.462 0.00 0.00 0.00 4.02
4177 4386 4.746535 TGTTCCCTTTTTCTTTTGACCC 57.253 40.909 0.00 0.00 0.00 4.46
4191 4400 2.366972 ACCCCCTCCCTTCCGATG 60.367 66.667 0.00 0.00 0.00 3.84
4192 4401 2.366972 CCCCCTCCCTTCCGATGT 60.367 66.667 0.00 0.00 0.00 3.06
4196 4405 0.983378 CCCTCCCTTCCGATGTCCTT 60.983 60.000 0.00 0.00 0.00 3.36
4199 4408 0.252513 TCCCTTCCGATGTCCTTCCA 60.253 55.000 0.00 0.00 0.00 3.53
4235 4444 4.713735 TTCAAGCCATCGCCGCCA 62.714 61.111 0.00 0.00 34.57 5.69
4373 4582 1.594293 GTGTCCTGGACGTGTGTGG 60.594 63.158 21.15 0.00 34.95 4.17
4403 4612 2.031012 CTGGCGCAACAGTGAGGA 59.969 61.111 10.83 0.00 33.81 3.71
4405 4614 2.031163 GGCGCAACAGTGAGGACT 59.969 61.111 10.83 0.00 0.00 3.85
4417 4626 1.304217 GAGGACTCCTCCACCGTCA 60.304 63.158 13.65 0.00 44.36 4.35
4445 4654 4.077184 CAGGTGGAGCGGCGGTTA 62.077 66.667 14.71 2.52 0.00 2.85
4448 4657 4.424566 GTGGAGCGGCGGTTACGA 62.425 66.667 14.71 0.00 44.60 3.43
4450 4659 3.818787 GGAGCGGCGGTTACGAGA 61.819 66.667 14.71 0.00 44.60 4.04
4451 4660 2.180017 GAGCGGCGGTTACGAGAA 59.820 61.111 14.71 0.00 44.60 2.87
4461 4695 1.270147 GGTTACGAGAAGTGGTGCAGT 60.270 52.381 0.00 0.00 0.00 4.40
4466 4700 1.729472 CGAGAAGTGGTGCAGTAGACG 60.729 57.143 0.00 0.00 0.00 4.18
4482 4717 4.697756 CGTCACCCATGGGCGTGT 62.698 66.667 31.73 8.48 39.32 4.49
4497 4732 1.475751 GCGTGTTGGATGATGGAGGAT 60.476 52.381 0.00 0.00 0.00 3.24
4520 4755 2.370647 GATCTGGTGGTCTAGCCGGC 62.371 65.000 21.89 21.89 41.21 6.13
4526 4761 3.224324 GGTCTAGCCGGCGATGGA 61.224 66.667 23.20 14.77 0.00 3.41
4560 4795 1.515521 CGAAAGCTTGGTTCGGCCTT 61.516 55.000 10.51 0.00 43.19 4.35
4574 4809 2.742372 CCTTGGCCAGAACCGTCG 60.742 66.667 5.11 0.00 0.00 5.12
4621 4857 3.494254 TTGGAGGCGTTGTGGGGT 61.494 61.111 0.00 0.00 0.00 4.95
4622 4858 3.783362 TTGGAGGCGTTGTGGGGTG 62.783 63.158 0.00 0.00 0.00 4.61
4633 4869 0.470341 TGTGGGGTGATTCACGTTCA 59.530 50.000 10.56 6.08 36.74 3.18
4634 4870 1.073125 TGTGGGGTGATTCACGTTCAT 59.927 47.619 10.56 0.00 36.74 2.57
4638 4874 3.244596 TGGGGTGATTCACGTTCATTGTA 60.245 43.478 10.56 0.00 34.83 2.41
4665 4902 0.683179 GAGGAAACCCCAAATCCGGG 60.683 60.000 0.00 0.00 46.94 5.73
4666 4905 2.355986 GGAAACCCCAAATCCGGGC 61.356 63.158 0.00 0.00 45.90 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.408634 TCCAAGACAAGAATTTCGGGAC 58.591 45.455 0.00 0.00 0.00 4.46
48 49 3.780804 TCCAAGACAAGAATTTCGGGA 57.219 42.857 0.00 0.00 0.00 5.14
49 50 5.163513 CAAATCCAAGACAAGAATTTCGGG 58.836 41.667 0.00 0.00 0.00 5.14
50 51 5.772521 ACAAATCCAAGACAAGAATTTCGG 58.227 37.500 0.00 0.00 0.00 4.30
51 52 6.672147 AGACAAATCCAAGACAAGAATTTCG 58.328 36.000 0.00 0.00 0.00 3.46
52 53 9.003658 TCTAGACAAATCCAAGACAAGAATTTC 57.996 33.333 0.00 0.00 0.00 2.17
53 54 8.924511 TCTAGACAAATCCAAGACAAGAATTT 57.075 30.769 0.00 0.00 0.00 1.82
55 56 9.606631 GTATCTAGACAAATCCAAGACAAGAAT 57.393 33.333 0.00 0.00 0.00 2.40
56 57 7.759886 CGTATCTAGACAAATCCAAGACAAGAA 59.240 37.037 0.00 0.00 0.00 2.52
57 58 7.258441 CGTATCTAGACAAATCCAAGACAAGA 58.742 38.462 0.00 0.00 0.00 3.02
58 59 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
59 60 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
60 61 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
61 62 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
62 63 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
63 64 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
64 65 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
65 66 6.015688 GGTACATCCGTATCTAGACAAATCCA 60.016 42.308 0.00 0.00 0.00 3.41
66 67 6.208994 AGGTACATCCGTATCTAGACAAATCC 59.791 42.308 0.00 0.00 37.29 3.01
67 68 7.216973 AGGTACATCCGTATCTAGACAAATC 57.783 40.000 0.00 0.00 37.29 2.17
68 69 8.701908 TTAGGTACATCCGTATCTAGACAAAT 57.298 34.615 0.00 0.00 41.33 2.32
69 70 8.701908 ATTAGGTACATCCGTATCTAGACAAA 57.298 34.615 0.00 0.00 41.33 2.83
70 71 9.224267 GTATTAGGTACATCCGTATCTAGACAA 57.776 37.037 0.00 0.00 41.33 3.18
71 72 8.600668 AGTATTAGGTACATCCGTATCTAGACA 58.399 37.037 0.00 0.00 41.33 3.41
77 78 9.334693 CGTTTTAGTATTAGGTACATCCGTATC 57.665 37.037 0.00 0.00 41.99 2.24
78 79 8.850156 ACGTTTTAGTATTAGGTACATCCGTAT 58.150 33.333 0.00 0.00 41.99 3.06
79 80 8.128582 CACGTTTTAGTATTAGGTACATCCGTA 58.871 37.037 0.00 0.00 41.99 4.02
80 81 6.974622 CACGTTTTAGTATTAGGTACATCCGT 59.025 38.462 0.00 0.00 41.99 4.69
81 82 7.166473 GTCACGTTTTAGTATTAGGTACATCCG 59.834 40.741 0.00 0.00 41.99 4.18
82 83 8.193438 AGTCACGTTTTAGTATTAGGTACATCC 58.807 37.037 0.00 0.00 35.67 3.51
83 84 9.578439 AAGTCACGTTTTAGTATTAGGTACATC 57.422 33.333 0.00 0.00 35.67 3.06
84 85 9.578439 GAAGTCACGTTTTAGTATTAGGTACAT 57.422 33.333 0.00 0.00 35.67 2.29
85 86 8.575589 TGAAGTCACGTTTTAGTATTAGGTACA 58.424 33.333 0.00 0.00 35.67 2.90
86 87 8.970691 TGAAGTCACGTTTTAGTATTAGGTAC 57.029 34.615 0.00 0.00 0.00 3.34
88 89 9.578439 GTATGAAGTCACGTTTTAGTATTAGGT 57.422 33.333 0.00 0.00 0.00 3.08
89 90 9.577110 TGTATGAAGTCACGTTTTAGTATTAGG 57.423 33.333 0.00 0.00 0.00 2.69
92 93 9.871238 AGATGTATGAAGTCACGTTTTAGTATT 57.129 29.630 0.00 0.00 0.00 1.89
93 94 9.302345 CAGATGTATGAAGTCACGTTTTAGTAT 57.698 33.333 0.00 0.00 0.00 2.12
94 95 8.301720 ACAGATGTATGAAGTCACGTTTTAGTA 58.698 33.333 0.00 0.00 0.00 1.82
95 96 7.152645 ACAGATGTATGAAGTCACGTTTTAGT 58.847 34.615 0.00 0.00 0.00 2.24
96 97 7.582435 ACAGATGTATGAAGTCACGTTTTAG 57.418 36.000 0.00 0.00 0.00 1.85
97 98 9.647797 AATACAGATGTATGAAGTCACGTTTTA 57.352 29.630 6.26 0.00 40.78 1.52
98 99 8.547967 AATACAGATGTATGAAGTCACGTTTT 57.452 30.769 6.26 0.00 40.78 2.43
99 100 8.443160 CAAATACAGATGTATGAAGTCACGTTT 58.557 33.333 6.26 0.00 40.78 3.60
100 101 7.064609 CCAAATACAGATGTATGAAGTCACGTT 59.935 37.037 6.26 0.00 40.78 3.99
101 102 6.535150 CCAAATACAGATGTATGAAGTCACGT 59.465 38.462 6.26 0.00 40.78 4.49
102 103 6.756542 TCCAAATACAGATGTATGAAGTCACG 59.243 38.462 6.26 0.00 40.78 4.35
103 104 7.549134 TGTCCAAATACAGATGTATGAAGTCAC 59.451 37.037 6.26 1.26 40.78 3.67
104 105 7.619965 TGTCCAAATACAGATGTATGAAGTCA 58.380 34.615 6.26 2.47 40.78 3.41
105 106 8.492673 TTGTCCAAATACAGATGTATGAAGTC 57.507 34.615 6.26 0.26 40.78 3.01
106 107 8.862325 TTTGTCCAAATACAGATGTATGAAGT 57.138 30.769 6.26 0.00 40.78 3.01
107 108 9.941664 GATTTGTCCAAATACAGATGTATGAAG 57.058 33.333 6.26 0.71 40.77 3.02
108 109 9.685276 AGATTTGTCCAAATACAGATGTATGAA 57.315 29.630 6.26 0.00 40.77 2.57
113 114 9.167311 GTCTTAGATTTGTCCAAATACAGATGT 57.833 33.333 5.29 0.00 40.77 3.06
114 115 9.166173 TGTCTTAGATTTGTCCAAATACAGATG 57.834 33.333 5.29 0.00 40.77 2.90
115 116 9.739276 TTGTCTTAGATTTGTCCAAATACAGAT 57.261 29.630 5.29 0.00 40.77 2.90
116 117 9.219603 CTTGTCTTAGATTTGTCCAAATACAGA 57.780 33.333 5.29 5.04 40.77 3.41
117 118 9.219603 TCTTGTCTTAGATTTGTCCAAATACAG 57.780 33.333 5.29 3.08 40.77 2.74
118 119 9.567776 TTCTTGTCTTAGATTTGTCCAAATACA 57.432 29.630 5.29 3.80 40.77 2.29
123 124 9.748708 CAAAATTCTTGTCTTAGATTTGTCCAA 57.251 29.630 0.00 0.00 0.00 3.53
124 125 8.359642 CCAAAATTCTTGTCTTAGATTTGTCCA 58.640 33.333 0.00 0.00 28.79 4.02
125 126 7.814587 CCCAAAATTCTTGTCTTAGATTTGTCC 59.185 37.037 0.00 0.00 28.79 4.02
126 127 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
127 128 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
128 129 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
129 130 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
130 131 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
131 132 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
132 133 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
133 134 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
134 135 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
135 136 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
136 137 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
137 138 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
138 139 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
139 140 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
140 141 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
141 142 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
142 143 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
143 144 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
144 145 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
145 146 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
146 147 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
147 148 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
148 149 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
149 150 0.978907 TTTTGTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
150 151 3.703052 TCTATTTTGTACTCCCTCCGTCC 59.297 47.826 0.00 0.00 0.00 4.79
151 152 4.996788 TCTATTTTGTACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
152 153 4.443034 GCATCTATTTTGTACTCCCTCCGT 60.443 45.833 0.00 0.00 0.00 4.69
153 154 4.058817 GCATCTATTTTGTACTCCCTCCG 58.941 47.826 0.00 0.00 0.00 4.63
154 155 5.036117 TGCATCTATTTTGTACTCCCTCC 57.964 43.478 0.00 0.00 0.00 4.30
155 156 7.573968 ATTTGCATCTATTTTGTACTCCCTC 57.426 36.000 0.00 0.00 0.00 4.30
156 157 9.646522 AATATTTGCATCTATTTTGTACTCCCT 57.353 29.630 0.00 0.00 0.00 4.20
157 158 9.683069 CAATATTTGCATCTATTTTGTACTCCC 57.317 33.333 0.00 0.00 0.00 4.30
158 159 9.683069 CCAATATTTGCATCTATTTTGTACTCC 57.317 33.333 0.00 0.00 0.00 3.85
170 171 3.634504 TGCCAGACCAATATTTGCATCT 58.365 40.909 0.00 0.00 0.00 2.90
189 190 3.179048 GTTTTGAATTAGACGCCCATGC 58.821 45.455 0.00 0.00 0.00 4.06
251 253 4.039245 TCAAGTAGTGAGTTCAGGGTTCTG 59.961 45.833 0.00 0.00 42.21 3.02
283 285 5.994054 TGTTCTGGATGAAAGAGTGAAGAAG 59.006 40.000 0.00 0.00 36.30 2.85
325 335 2.348362 TGCAAATGAATCTACGAGTGCG 59.652 45.455 0.00 0.00 44.79 5.34
349 361 1.970640 GGGATGCAACCTCCTGTTTTT 59.029 47.619 13.30 0.00 34.00 1.94
401 413 1.883084 CAAGCGGGCGGTGTCTATC 60.883 63.158 0.00 0.00 0.00 2.08
411 423 1.876497 TTTGAATCTGGCAAGCGGGC 61.876 55.000 0.00 0.00 43.73 6.13
412 424 0.819582 ATTTGAATCTGGCAAGCGGG 59.180 50.000 0.00 0.00 0.00 6.13
441 453 2.292267 CACACTGCAAACTTCCAGAGT 58.708 47.619 0.00 0.00 41.47 3.24
443 455 2.418368 ACACACTGCAAACTTCCAGA 57.582 45.000 0.00 0.00 33.40 3.86
489 501 3.051081 AGATCCAAAGCAGTGTCTGAC 57.949 47.619 0.00 0.00 32.44 3.51
490 502 3.368843 GCTAGATCCAAAGCAGTGTCTGA 60.369 47.826 7.29 0.00 38.63 3.27
491 503 2.935201 GCTAGATCCAAAGCAGTGTCTG 59.065 50.000 7.29 0.00 38.63 3.51
492 504 2.093235 GGCTAGATCCAAAGCAGTGTCT 60.093 50.000 12.73 0.00 40.61 3.41
493 505 2.284190 GGCTAGATCCAAAGCAGTGTC 58.716 52.381 12.73 0.00 40.61 3.67
494 506 1.630369 TGGCTAGATCCAAAGCAGTGT 59.370 47.619 12.73 0.00 40.61 3.55
495 507 2.408271 TGGCTAGATCCAAAGCAGTG 57.592 50.000 12.73 0.00 40.61 3.66
525 542 5.238650 GTCACTGAGCTAAACTGCCTAAAAA 59.761 40.000 0.00 0.00 0.00 1.94
530 547 1.337260 CGTCACTGAGCTAAACTGCCT 60.337 52.381 0.00 0.00 0.00 4.75
531 548 1.071605 CGTCACTGAGCTAAACTGCC 58.928 55.000 0.00 0.00 0.00 4.85
554 572 3.338818 AGACACAATTGAACTGTTGCG 57.661 42.857 13.59 0.00 0.00 4.85
567 585 1.332375 GCGCAAGGTTACAAGACACAA 59.668 47.619 0.30 0.00 38.28 3.33
572 590 0.882927 AAGCGCGCAAGGTTACAAGA 60.883 50.000 35.10 0.00 38.28 3.02
573 591 0.040425 AAAGCGCGCAAGGTTACAAG 60.040 50.000 35.10 0.00 38.28 3.16
715 736 0.178990 AAAAGAGGTGGGTGGAGCAC 60.179 55.000 0.00 0.00 0.00 4.40
716 737 0.110486 GAAAAGAGGTGGGTGGAGCA 59.890 55.000 0.00 0.00 0.00 4.26
717 738 0.402121 AGAAAAGAGGTGGGTGGAGC 59.598 55.000 0.00 0.00 0.00 4.70
718 739 4.576330 AATAGAAAAGAGGTGGGTGGAG 57.424 45.455 0.00 0.00 0.00 3.86
719 740 4.662278 CAAATAGAAAAGAGGTGGGTGGA 58.338 43.478 0.00 0.00 0.00 4.02
720 741 3.193479 GCAAATAGAAAAGAGGTGGGTGG 59.807 47.826 0.00 0.00 0.00 4.61
721 742 3.193479 GGCAAATAGAAAAGAGGTGGGTG 59.807 47.826 0.00 0.00 0.00 4.61
722 743 3.431415 GGCAAATAGAAAAGAGGTGGGT 58.569 45.455 0.00 0.00 0.00 4.51
896 917 2.363795 TCGCCCTCCTCCGTCAAT 60.364 61.111 0.00 0.00 0.00 2.57
1238 1269 1.456705 CCCTCCTCCTCTTCCTCCG 60.457 68.421 0.00 0.00 0.00 4.63
1245 1276 2.204705 ACCTCCCCCTCCTCCTCT 60.205 66.667 0.00 0.00 0.00 3.69
1246 1277 2.284151 GACCTCCCCCTCCTCCTC 59.716 72.222 0.00 0.00 0.00 3.71
1508 1551 9.562408 TCCTGTCACACAAGTAAAATATAACAA 57.438 29.630 0.00 0.00 0.00 2.83
1510 1553 8.166706 CGTCCTGTCACACAAGTAAAATATAAC 58.833 37.037 0.00 0.00 0.00 1.89
1512 1555 7.380536 ACGTCCTGTCACACAAGTAAAATATA 58.619 34.615 0.00 0.00 0.00 0.86
1513 1556 6.228258 ACGTCCTGTCACACAAGTAAAATAT 58.772 36.000 0.00 0.00 0.00 1.28
1515 1558 4.448210 ACGTCCTGTCACACAAGTAAAAT 58.552 39.130 0.00 0.00 0.00 1.82
1516 1559 3.864243 ACGTCCTGTCACACAAGTAAAA 58.136 40.909 0.00 0.00 0.00 1.52
1519 1562 2.816689 CAACGTCCTGTCACACAAGTA 58.183 47.619 0.00 0.00 0.00 2.24
1520 1563 1.651987 CAACGTCCTGTCACACAAGT 58.348 50.000 0.00 0.00 0.00 3.16
1521 1564 0.304705 GCAACGTCCTGTCACACAAG 59.695 55.000 0.00 0.00 0.00 3.16
1524 1567 0.529773 TCTGCAACGTCCTGTCACAC 60.530 55.000 0.00 0.00 0.00 3.82
1611 1663 4.394078 TTCTCGTCGCCGGTCACG 62.394 66.667 18.15 18.15 40.55 4.35
1737 1792 2.896443 CTCTCCTTGGACTCGCCC 59.104 66.667 0.00 0.00 34.97 6.13
1740 1795 2.202676 GCGCTCTCCTTGGACTCG 60.203 66.667 0.00 0.00 0.00 4.18
1947 2002 1.585006 GCCGACGGTGAAGAGAAGA 59.415 57.895 16.73 0.00 0.00 2.87
1954 2009 2.652530 GTAGTGGCCGACGGTGAA 59.347 61.111 16.73 0.00 0.00 3.18
1967 2022 3.508845 AGTTTTGACATGGCAGGTAGT 57.491 42.857 4.11 0.00 0.00 2.73
1973 2028 2.028130 ACCGAAAGTTTTGACATGGCA 58.972 42.857 0.00 0.00 0.00 4.92
1991 2046 7.278646 CGTTTTTACCCCTAGTGATAGTAAACC 59.721 40.741 0.00 0.00 33.81 3.27
1999 2054 3.199289 CCCTCGTTTTTACCCCTAGTGAT 59.801 47.826 0.00 0.00 0.00 3.06
2001 2056 2.355412 CCCCTCGTTTTTACCCCTAGTG 60.355 54.545 0.00 0.00 0.00 2.74
2054 2109 0.723414 AATCTGACATGCTTCGTGCG 59.277 50.000 0.00 0.00 46.63 5.34
2111 2166 1.404181 CCGTATGGCCGTATCATGAGG 60.404 57.143 8.21 0.00 0.00 3.86
2113 2168 1.623163 TCCGTATGGCCGTATCATGA 58.377 50.000 8.21 0.00 34.14 3.07
2114 2169 2.672961 ATCCGTATGGCCGTATCATG 57.327 50.000 8.21 0.00 34.14 3.07
2115 2170 4.322080 CATATCCGTATGGCCGTATCAT 57.678 45.455 8.21 3.48 35.16 2.45
2116 2171 3.793797 CATATCCGTATGGCCGTATCA 57.206 47.619 8.21 0.00 35.16 2.15
2125 2180 3.861840 CCAGCCTAACCATATCCGTATG 58.138 50.000 0.00 0.00 37.93 2.39
2299 2443 1.531365 CCAACCCTTTCAGCCAGCA 60.531 57.895 0.00 0.00 0.00 4.41
2302 2446 1.152567 CACCCAACCCTTTCAGCCA 60.153 57.895 0.00 0.00 0.00 4.75
2306 2450 2.806434 CATCATCACCCAACCCTTTCA 58.194 47.619 0.00 0.00 0.00 2.69
2310 2454 1.077501 CGCATCATCACCCAACCCT 60.078 57.895 0.00 0.00 0.00 4.34
2376 2554 1.032657 TTCTCTCCTCTCTTCCGCGG 61.033 60.000 22.12 22.12 0.00 6.46
2388 2566 3.182312 GCGGCTGCTTTTCTCTCC 58.818 61.111 11.21 0.00 38.39 3.71
2439 2617 1.291877 GAATCGAATCGCCGGATGGG 61.292 60.000 5.05 0.00 39.58 4.00
2585 2767 8.013378 ACATCATAAACGAAAACGTAGAAAAGG 58.987 33.333 0.00 0.00 0.00 3.11
2586 2768 8.928844 ACATCATAAACGAAAACGTAGAAAAG 57.071 30.769 0.00 0.00 0.00 2.27
2588 2770 9.719279 AAAACATCATAAACGAAAACGTAGAAA 57.281 25.926 0.00 0.00 0.00 2.52
2625 2807 0.745128 ACGTGAACAAACAGCGGGAA 60.745 50.000 0.00 0.00 0.00 3.97
2626 2808 1.153329 ACGTGAACAAACAGCGGGA 60.153 52.632 0.00 0.00 0.00 5.14
2627 2809 1.010125 CACGTGAACAAACAGCGGG 60.010 57.895 10.90 0.00 0.00 6.13
2628 2810 1.654137 GCACGTGAACAAACAGCGG 60.654 57.895 22.23 0.00 0.00 5.52
2637 2819 2.203153 ACCCACCAGCACGTGAAC 60.203 61.111 22.23 1.65 35.68 3.18
3111 3293 2.154798 CTCAACGTCCCGCTTCTCCA 62.155 60.000 0.00 0.00 0.00 3.86
3199 3381 1.214853 GGTCTTCTTCGTCCCCGTC 59.785 63.158 0.00 0.00 35.01 4.79
3427 3615 2.851104 GACCGCTTCCGTTTCGTG 59.149 61.111 0.00 0.00 0.00 4.35
3492 3680 4.682714 TCTTCCTGCCTGGCCCCT 62.683 66.667 17.53 0.00 35.26 4.79
3548 3736 2.202184 GCTTTTCTTCGTCGCGGC 60.202 61.111 6.13 1.93 0.00 6.53
3549 3737 2.093983 CGCTTTTCTTCGTCGCGG 59.906 61.111 6.13 0.00 40.11 6.46
3702 3891 4.378563 CGTAATCTCTACCGGCTACATCTG 60.379 50.000 0.00 0.00 0.00 2.90
3736 3928 3.265791 CTGAAGCTATCACACACTTCCC 58.734 50.000 0.00 0.00 38.17 3.97
3803 3995 5.238868 TGTCAGTTCAGTAGTGAGTGTCTAC 59.761 44.000 0.00 0.00 36.88 2.59
3815 4007 5.867174 CCGATTACAACATGTCAGTTCAGTA 59.133 40.000 0.00 0.00 0.00 2.74
3850 4045 3.407967 GGGGAGGGACGGCATTCA 61.408 66.667 0.00 0.00 0.00 2.57
3856 4051 2.764547 GAGAAGGGGGAGGGACGG 60.765 72.222 0.00 0.00 0.00 4.79
3865 4060 1.751162 ACGCGAGAGAGAGAAGGGG 60.751 63.158 15.93 0.00 33.96 4.79
3867 4062 1.226547 GCACGCGAGAGAGAGAAGG 60.227 63.158 15.93 0.00 33.96 3.46
3870 4065 1.422179 CTACGCACGCGAGAGAGAGA 61.422 60.000 19.66 0.00 42.83 3.10
3893 4099 2.125106 ACTTCGCCCGCATCTTCC 60.125 61.111 0.00 0.00 0.00 3.46
3935 4141 2.473760 CCGCGTCGTCTCTGGATCT 61.474 63.158 4.92 0.00 0.00 2.75
3936 4142 2.024871 CCGCGTCGTCTCTGGATC 59.975 66.667 4.92 0.00 0.00 3.36
3937 4143 2.437895 TCCGCGTCGTCTCTGGAT 60.438 61.111 4.92 0.00 0.00 3.41
3938 4144 3.125573 CTCCGCGTCGTCTCTGGA 61.126 66.667 4.92 0.00 0.00 3.86
3939 4145 4.180946 CCTCCGCGTCGTCTCTGG 62.181 72.222 4.92 0.00 0.00 3.86
3940 4146 3.432588 ACCTCCGCGTCGTCTCTG 61.433 66.667 4.92 0.00 0.00 3.35
3941 4147 3.432588 CACCTCCGCGTCGTCTCT 61.433 66.667 4.92 0.00 0.00 3.10
3942 4148 3.429141 TCACCTCCGCGTCGTCTC 61.429 66.667 4.92 0.00 0.00 3.36
3943 4149 3.735029 GTCACCTCCGCGTCGTCT 61.735 66.667 4.92 0.00 0.00 4.18
3974 4180 2.158842 CCCTCCACTCTATCCTTTGCTG 60.159 54.545 0.00 0.00 0.00 4.41
4005 4211 3.753272 GCACTTGCTTATTTGAGAGGTCA 59.247 43.478 0.00 0.00 38.21 4.02
4013 4219 6.348621 ACAAAAGTTGCACTTGCTTATTTG 57.651 33.333 2.33 10.54 38.66 2.32
4024 4230 8.182227 ACTAGACTAGAAAAACAAAAGTTGCAC 58.818 33.333 16.55 0.00 0.00 4.57
4059 4268 1.518572 CTCGCCGTCGCCAAACTAT 60.519 57.895 0.00 0.00 35.26 2.12
4075 4284 0.588252 AATTGCGAGCACACACACTC 59.412 50.000 0.00 0.00 0.00 3.51
4076 4285 1.800586 CTAATTGCGAGCACACACACT 59.199 47.619 0.00 0.00 0.00 3.55
4077 4286 1.531149 ACTAATTGCGAGCACACACAC 59.469 47.619 0.00 0.00 0.00 3.82
4078 4287 1.798223 GACTAATTGCGAGCACACACA 59.202 47.619 0.00 0.00 0.00 3.72
4079 4288 2.069273 AGACTAATTGCGAGCACACAC 58.931 47.619 0.00 0.00 0.00 3.82
4080 4289 2.337583 GAGACTAATTGCGAGCACACA 58.662 47.619 0.00 0.00 0.00 3.72
4081 4290 1.661112 GGAGACTAATTGCGAGCACAC 59.339 52.381 0.00 0.00 0.00 3.82
4082 4291 1.735700 CGGAGACTAATTGCGAGCACA 60.736 52.381 0.00 0.00 0.00 4.57
4083 4292 0.924090 CGGAGACTAATTGCGAGCAC 59.076 55.000 0.00 0.00 0.00 4.40
4084 4293 0.530744 ACGGAGACTAATTGCGAGCA 59.469 50.000 0.00 0.00 33.39 4.26
4085 4294 2.033049 TCTACGGAGACTAATTGCGAGC 59.967 50.000 0.00 0.00 33.39 5.03
4086 4295 3.312973 ACTCTACGGAGACTAATTGCGAG 59.687 47.826 0.00 0.00 41.86 5.03
4087 4296 3.276857 ACTCTACGGAGACTAATTGCGA 58.723 45.455 0.00 0.00 41.86 5.10
4088 4297 3.694535 ACTCTACGGAGACTAATTGCG 57.305 47.619 0.00 0.00 41.86 4.85
4089 4298 7.034397 AGTTTTACTCTACGGAGACTAATTGC 58.966 38.462 0.00 0.00 41.86 3.56
4090 4299 7.701501 GGAGTTTTACTCTACGGAGACTAATTG 59.298 40.741 0.00 0.00 44.46 2.32
4091 4300 7.395489 TGGAGTTTTACTCTACGGAGACTAATT 59.605 37.037 0.00 0.00 44.46 1.40
4092 4301 6.888632 TGGAGTTTTACTCTACGGAGACTAAT 59.111 38.462 0.00 0.00 44.46 1.73
4093 4302 6.150140 GTGGAGTTTTACTCTACGGAGACTAA 59.850 42.308 7.44 0.00 44.66 2.24
4094 4303 5.645497 GTGGAGTTTTACTCTACGGAGACTA 59.355 44.000 7.44 0.00 44.66 2.59
4095 4304 4.458642 GTGGAGTTTTACTCTACGGAGACT 59.541 45.833 7.44 0.00 44.66 3.24
4096 4305 4.731720 GTGGAGTTTTACTCTACGGAGAC 58.268 47.826 7.44 0.00 44.66 3.36
4103 4312 2.028748 GCGGGTGTGGAGTTTTACTCTA 60.029 50.000 6.77 0.00 44.46 2.43
4104 4313 1.270678 GCGGGTGTGGAGTTTTACTCT 60.271 52.381 6.77 0.00 44.46 3.24
4105 4314 1.154197 GCGGGTGTGGAGTTTTACTC 58.846 55.000 0.00 0.00 44.32 2.59
4106 4315 0.250597 GGCGGGTGTGGAGTTTTACT 60.251 55.000 0.00 0.00 0.00 2.24
4107 4316 0.250597 AGGCGGGTGTGGAGTTTTAC 60.251 55.000 0.00 0.00 0.00 2.01
4108 4317 0.250553 CAGGCGGGTGTGGAGTTTTA 60.251 55.000 0.00 0.00 0.00 1.52
4109 4318 1.528309 CAGGCGGGTGTGGAGTTTT 60.528 57.895 0.00 0.00 0.00 2.43
4110 4319 2.113139 CAGGCGGGTGTGGAGTTT 59.887 61.111 0.00 0.00 0.00 2.66
4111 4320 4.643387 GCAGGCGGGTGTGGAGTT 62.643 66.667 0.00 0.00 0.00 3.01
4113 4322 3.850098 AAAGCAGGCGGGTGTGGAG 62.850 63.158 0.00 0.00 0.00 3.86
4114 4323 3.884774 AAAGCAGGCGGGTGTGGA 61.885 61.111 0.00 0.00 0.00 4.02
4115 4324 3.673484 CAAAGCAGGCGGGTGTGG 61.673 66.667 0.00 0.00 0.00 4.17
4116 4325 2.594303 TCAAAGCAGGCGGGTGTG 60.594 61.111 0.18 0.18 33.33 3.82
4117 4326 2.281761 CTCAAAGCAGGCGGGTGT 60.282 61.111 0.00 0.00 0.00 4.16
4118 4327 3.741476 GCTCAAAGCAGGCGGGTG 61.741 66.667 0.00 0.00 41.89 4.61
4119 4328 2.983725 AAAGCTCAAAGCAGGCGGGT 62.984 55.000 1.29 0.00 45.56 5.28
4120 4329 2.270986 AAAGCTCAAAGCAGGCGGG 61.271 57.895 1.29 0.00 45.56 6.13
4121 4330 1.080974 CAAAGCTCAAAGCAGGCGG 60.081 57.895 1.29 0.00 45.56 6.13
4122 4331 0.386478 GACAAAGCTCAAAGCAGGCG 60.386 55.000 1.29 0.00 45.56 5.52
4123 4332 0.386478 CGACAAAGCTCAAAGCAGGC 60.386 55.000 1.29 0.00 45.56 4.85
4124 4333 1.229428 TCGACAAAGCTCAAAGCAGG 58.771 50.000 1.29 0.00 45.56 4.85
4125 4334 2.225019 ACATCGACAAAGCTCAAAGCAG 59.775 45.455 1.29 0.00 45.56 4.24
4126 4335 2.031769 CACATCGACAAAGCTCAAAGCA 60.032 45.455 1.29 0.00 45.56 3.91
4127 4336 2.224079 TCACATCGACAAAGCTCAAAGC 59.776 45.455 0.00 0.00 42.84 3.51
4128 4337 3.742882 TCTCACATCGACAAAGCTCAAAG 59.257 43.478 0.00 0.00 0.00 2.77
4129 4338 3.727726 TCTCACATCGACAAAGCTCAAA 58.272 40.909 0.00 0.00 0.00 2.69
4130 4339 3.320626 CTCTCACATCGACAAAGCTCAA 58.679 45.455 0.00 0.00 0.00 3.02
4131 4340 2.928301 GCTCTCACATCGACAAAGCTCA 60.928 50.000 0.00 0.00 0.00 4.26
4132 4341 1.658095 GCTCTCACATCGACAAAGCTC 59.342 52.381 0.00 0.00 0.00 4.09
4133 4342 1.274728 AGCTCTCACATCGACAAAGCT 59.725 47.619 0.00 0.00 33.97 3.74
4134 4343 1.719600 AGCTCTCACATCGACAAAGC 58.280 50.000 0.00 0.00 0.00 3.51
4135 4344 4.024556 ACAAAAGCTCTCACATCGACAAAG 60.025 41.667 0.00 0.00 0.00 2.77
4136 4345 3.876914 ACAAAAGCTCTCACATCGACAAA 59.123 39.130 0.00 0.00 0.00 2.83
4137 4346 3.466836 ACAAAAGCTCTCACATCGACAA 58.533 40.909 0.00 0.00 0.00 3.18
4138 4347 3.111853 ACAAAAGCTCTCACATCGACA 57.888 42.857 0.00 0.00 0.00 4.35
4139 4348 3.120511 GGAACAAAAGCTCTCACATCGAC 60.121 47.826 0.00 0.00 0.00 4.20
4140 4349 3.067106 GGAACAAAAGCTCTCACATCGA 58.933 45.455 0.00 0.00 0.00 3.59
4141 4350 2.160417 GGGAACAAAAGCTCTCACATCG 59.840 50.000 0.00 0.00 0.00 3.84
4142 4351 3.416156 AGGGAACAAAAGCTCTCACATC 58.584 45.455 0.00 0.00 0.00 3.06
4143 4352 3.515602 AGGGAACAAAAGCTCTCACAT 57.484 42.857 0.00 0.00 0.00 3.21
4144 4353 3.297134 AAGGGAACAAAAGCTCTCACA 57.703 42.857 0.00 0.00 0.00 3.58
4145 4354 4.655762 AAAAGGGAACAAAAGCTCTCAC 57.344 40.909 0.00 0.00 0.00 3.51
4146 4355 4.956075 AGAAAAAGGGAACAAAAGCTCTCA 59.044 37.500 0.00 0.00 0.00 3.27
4147 4356 5.521906 AGAAAAAGGGAACAAAAGCTCTC 57.478 39.130 0.00 0.00 0.00 3.20
4148 4357 5.939764 AAGAAAAAGGGAACAAAAGCTCT 57.060 34.783 0.00 0.00 0.00 4.09
4149 4358 6.593770 TCAAAAGAAAAAGGGAACAAAAGCTC 59.406 34.615 0.00 0.00 0.00 4.09
4150 4359 6.371548 GTCAAAAGAAAAAGGGAACAAAAGCT 59.628 34.615 0.00 0.00 0.00 3.74
4151 4360 6.403200 GGTCAAAAGAAAAAGGGAACAAAAGC 60.403 38.462 0.00 0.00 0.00 3.51
4152 4361 6.093495 GGGTCAAAAGAAAAAGGGAACAAAAG 59.907 38.462 0.00 0.00 0.00 2.27
4153 4362 5.941058 GGGTCAAAAGAAAAAGGGAACAAAA 59.059 36.000 0.00 0.00 0.00 2.44
4154 4363 5.492895 GGGTCAAAAGAAAAAGGGAACAAA 58.507 37.500 0.00 0.00 0.00 2.83
4155 4364 4.080807 GGGGTCAAAAGAAAAAGGGAACAA 60.081 41.667 0.00 0.00 0.00 2.83
4156 4365 3.452990 GGGGTCAAAAGAAAAAGGGAACA 59.547 43.478 0.00 0.00 0.00 3.18
4157 4366 3.181458 GGGGGTCAAAAGAAAAAGGGAAC 60.181 47.826 0.00 0.00 0.00 3.62
4158 4367 3.042682 GGGGGTCAAAAGAAAAAGGGAA 58.957 45.455 0.00 0.00 0.00 3.97
4159 4368 2.248950 AGGGGGTCAAAAGAAAAAGGGA 59.751 45.455 0.00 0.00 0.00 4.20
4160 4369 2.632996 GAGGGGGTCAAAAGAAAAAGGG 59.367 50.000 0.00 0.00 0.00 3.95
4161 4370 2.632996 GGAGGGGGTCAAAAGAAAAAGG 59.367 50.000 0.00 0.00 0.00 3.11
4162 4371 2.632996 GGGAGGGGGTCAAAAGAAAAAG 59.367 50.000 0.00 0.00 0.00 2.27
4163 4372 2.248950 AGGGAGGGGGTCAAAAGAAAAA 59.751 45.455 0.00 0.00 0.00 1.94
4164 4373 1.863581 AGGGAGGGGGTCAAAAGAAAA 59.136 47.619 0.00 0.00 0.00 2.29
4165 4374 1.541275 AGGGAGGGGGTCAAAAGAAA 58.459 50.000 0.00 0.00 0.00 2.52
4166 4375 1.427753 GAAGGGAGGGGGTCAAAAGAA 59.572 52.381 0.00 0.00 0.00 2.52
4167 4376 1.073098 GAAGGGAGGGGGTCAAAAGA 58.927 55.000 0.00 0.00 0.00 2.52
4168 4377 0.039764 GGAAGGGAGGGGGTCAAAAG 59.960 60.000 0.00 0.00 0.00 2.27
4169 4378 1.785353 CGGAAGGGAGGGGGTCAAAA 61.785 60.000 0.00 0.00 0.00 2.44
4170 4379 2.228480 CGGAAGGGAGGGGGTCAAA 61.228 63.158 0.00 0.00 0.00 2.69
4171 4380 2.486410 ATCGGAAGGGAGGGGGTCAA 62.486 60.000 0.00 0.00 0.00 3.18
4172 4381 2.955859 ATCGGAAGGGAGGGGGTCA 61.956 63.158 0.00 0.00 0.00 4.02
4173 4382 2.040779 ATCGGAAGGGAGGGGGTC 60.041 66.667 0.00 0.00 0.00 4.46
4174 4383 2.366972 CATCGGAAGGGAGGGGGT 60.367 66.667 0.00 0.00 0.00 4.95
4175 4384 2.366972 ACATCGGAAGGGAGGGGG 60.367 66.667 0.00 0.00 0.00 5.40
4176 4385 2.444256 GGACATCGGAAGGGAGGGG 61.444 68.421 0.00 0.00 0.00 4.79
4177 4386 0.983378 AAGGACATCGGAAGGGAGGG 60.983 60.000 0.00 0.00 0.00 4.30
4191 4400 1.069358 GATCAGATCGGGTGGAAGGAC 59.931 57.143 0.00 0.00 0.00 3.85
4192 4401 1.062886 AGATCAGATCGGGTGGAAGGA 60.063 52.381 4.67 0.00 0.00 3.36
4196 4405 1.203063 CCCTAGATCAGATCGGGTGGA 60.203 57.143 18.18 0.00 0.00 4.02
4199 4408 0.485099 AGCCCTAGATCAGATCGGGT 59.515 55.000 19.51 11.78 33.80 5.28
4323 4532 2.045438 ACCGCAATCGCATCCCAA 60.045 55.556 0.00 0.00 38.40 4.12
4352 4561 2.122989 ACACGTCCAGGACACCCT 60.123 61.111 20.13 0.00 45.74 4.34
4386 4595 2.031012 TCCTCACTGTTGCGCCAG 59.969 61.111 4.18 8.74 38.45 4.85
4387 4596 2.280797 GTCCTCACTGTTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
4403 4612 1.983224 CCATTGACGGTGGAGGAGT 59.017 57.895 0.00 0.00 39.12 3.85
4405 4614 1.899437 GAGCCATTGACGGTGGAGGA 61.899 60.000 0.00 0.00 39.12 3.71
4432 4641 4.124351 CTCGTAACCGCCGCTCCA 62.124 66.667 0.00 0.00 0.00 3.86
4435 4644 2.181021 CTTCTCGTAACCGCCGCT 59.819 61.111 0.00 0.00 0.00 5.52
4445 4654 1.269998 GTCTACTGCACCACTTCTCGT 59.730 52.381 0.00 0.00 0.00 4.18
4448 4657 1.269998 GACGTCTACTGCACCACTTCT 59.730 52.381 8.70 0.00 0.00 2.85
4450 4659 1.037493 TGACGTCTACTGCACCACTT 58.963 50.000 17.92 0.00 0.00 3.16
4451 4660 0.314302 GTGACGTCTACTGCACCACT 59.686 55.000 17.92 0.00 0.00 4.00
4461 4695 3.305314 GCCCATGGGTGACGTCTA 58.695 61.111 31.58 0.00 37.65 2.59
4482 4717 4.414514 AGATCAACATCCTCCATCATCCAA 59.585 41.667 0.00 0.00 0.00 3.53
4497 4732 1.555075 GGCTAGACCACCAGATCAACA 59.445 52.381 0.00 0.00 38.86 3.33
4520 4755 1.297598 GGCAAATTCGCGTCCATCG 60.298 57.895 5.77 0.00 43.12 3.84
4526 4761 2.123988 TTTCGCTGGCAAATTCGCGT 62.124 50.000 16.06 0.00 45.25 6.01
4560 4795 4.351938 CGTCGACGGTTCTGGCCA 62.352 66.667 29.70 4.71 35.37 5.36
4621 4857 3.376859 GGGCATACAATGAACGTGAATCA 59.623 43.478 0.00 0.00 0.00 2.57
4622 4858 3.243068 GGGGCATACAATGAACGTGAATC 60.243 47.826 0.00 0.00 0.00 2.52
4633 4869 0.923358 TTTCCTCCGGGGCATACAAT 59.077 50.000 0.00 0.00 34.39 2.71
4634 4870 0.034863 GTTTCCTCCGGGGCATACAA 60.035 55.000 0.00 0.00 34.39 2.41
4638 4874 3.739613 GGGTTTCCTCCGGGGCAT 61.740 66.667 0.00 0.00 34.39 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.