Multiple sequence alignment - TraesCS5B01G265700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G265700 chr5B 100.000 3525 0 0 1 3525 450514171 450510647 0.000000e+00 6510
1 TraesCS5B01G265700 chr5B 97.947 487 5 5 413 896 690404770 690404286 0.000000e+00 839
2 TraesCS5B01G265700 chr5A 91.789 1766 88 21 887 2629 477716623 477714892 0.000000e+00 2405
3 TraesCS5B01G265700 chr5A 89.777 851 84 3 2676 3523 42130283 42129433 0.000000e+00 1086
4 TraesCS5B01G265700 chr5A 89.234 418 18 10 16 429 477717003 477716609 6.800000e-137 497
5 TraesCS5B01G265700 chr5D 91.031 1784 83 30 887 2625 377263136 377261385 0.000000e+00 2337
6 TraesCS5B01G265700 chr5D 81.898 906 149 14 2627 3524 111999585 112000483 0.000000e+00 750
7 TraesCS5B01G265700 chr5D 95.783 332 8 3 99 429 377263447 377263121 6.700000e-147 531
8 TraesCS5B01G265700 chrUn 93.667 900 55 2 2627 3525 41114882 41115780 0.000000e+00 1345
9 TraesCS5B01G265700 chr4B 93.103 899 59 2 2627 3523 85607911 85608808 0.000000e+00 1314
10 TraesCS5B01G265700 chr4B 98.167 491 4 4 407 893 229178950 229178461 0.000000e+00 852
11 TraesCS5B01G265700 chr3A 90.011 901 86 1 2627 3523 204835955 204835055 0.000000e+00 1162
12 TraesCS5B01G265700 chr7A 88.013 901 103 2 2627 3523 36858039 36857140 0.000000e+00 1061
13 TraesCS5B01G265700 chr7B 87.528 898 110 2 2627 3523 637496809 637497705 0.000000e+00 1037
14 TraesCS5B01G265700 chr7B 87.349 909 103 5 2627 3524 615704285 615705192 0.000000e+00 1031
15 TraesCS5B01G265700 chr7B 98.915 461 5 0 426 886 613870833 613870373 0.000000e+00 824
16 TraesCS5B01G265700 chr1B 99.568 463 2 0 424 886 43265876 43266338 0.000000e+00 845
17 TraesCS5B01G265700 chr1B 98.710 465 6 0 423 887 530730536 530731000 0.000000e+00 826
18 TraesCS5B01G265700 chr3B 98.536 478 6 1 418 894 829743285 829742808 0.000000e+00 843
19 TraesCS5B01G265700 chr3B 99.143 467 3 1 422 887 469631146 469631612 0.000000e+00 839
20 TraesCS5B01G265700 chr3B 98.925 465 3 1 424 886 784926140 784926604 0.000000e+00 830
21 TraesCS5B01G265700 chr2A 99.142 466 4 0 421 886 761284150 761283685 0.000000e+00 839
22 TraesCS5B01G265700 chr2A 78.941 774 134 19 2767 3525 585695501 585696260 1.890000e-137 499
23 TraesCS5B01G265700 chr4D 80.357 896 163 9 2635 3525 396662856 396663743 0.000000e+00 667


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G265700 chr5B 450510647 450514171 3524 True 6510 6510 100.0000 1 3525 1 chr5B.!!$R1 3524
1 TraesCS5B01G265700 chr5A 477714892 477717003 2111 True 1451 2405 90.5115 16 2629 2 chr5A.!!$R2 2613
2 TraesCS5B01G265700 chr5A 42129433 42130283 850 True 1086 1086 89.7770 2676 3523 1 chr5A.!!$R1 847
3 TraesCS5B01G265700 chr5D 377261385 377263447 2062 True 1434 2337 93.4070 99 2625 2 chr5D.!!$R1 2526
4 TraesCS5B01G265700 chr5D 111999585 112000483 898 False 750 750 81.8980 2627 3524 1 chr5D.!!$F1 897
5 TraesCS5B01G265700 chrUn 41114882 41115780 898 False 1345 1345 93.6670 2627 3525 1 chrUn.!!$F1 898
6 TraesCS5B01G265700 chr4B 85607911 85608808 897 False 1314 1314 93.1030 2627 3523 1 chr4B.!!$F1 896
7 TraesCS5B01G265700 chr3A 204835055 204835955 900 True 1162 1162 90.0110 2627 3523 1 chr3A.!!$R1 896
8 TraesCS5B01G265700 chr7A 36857140 36858039 899 True 1061 1061 88.0130 2627 3523 1 chr7A.!!$R1 896
9 TraesCS5B01G265700 chr7B 637496809 637497705 896 False 1037 1037 87.5280 2627 3523 1 chr7B.!!$F2 896
10 TraesCS5B01G265700 chr7B 615704285 615705192 907 False 1031 1031 87.3490 2627 3524 1 chr7B.!!$F1 897
11 TraesCS5B01G265700 chr2A 585695501 585696260 759 False 499 499 78.9410 2767 3525 1 chr2A.!!$F1 758
12 TraesCS5B01G265700 chr4D 396662856 396663743 887 False 667 667 80.3570 2635 3525 1 chr4D.!!$F1 890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 476 0.033642 GGGCCTCACTATCCTAACGC 59.966 60.0 0.84 0.0 0.00 4.84 F
1030 1042 0.178891 TCTCCTCTGCCTCTTGGGTT 60.179 55.0 0.00 0.0 37.43 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1559 0.103572 CTTGCTTGCTTGCTTGGTGT 59.896 50.0 3.47 0.0 0.00 4.16 R
2706 2765 0.033011 GGGTCAGAGCCTGGAGTAGA 60.033 60.0 11.76 0.0 31.81 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.119137 ACAGGCTTCAACTGAAACCAAAC 60.119 43.478 13.07 0.00 41.50 2.93
43 44 3.131046 CAGGCTTCAACTGAAACCAAACT 59.869 43.478 13.07 0.00 41.50 2.66
61 63 6.106673 CCAAACTGTCGATAGTACAATCCTT 58.893 40.000 15.67 1.39 37.40 3.36
71 73 0.619255 TACAATCCTTGGAGGCCGGA 60.619 55.000 5.05 0.00 34.61 5.14
98 100 3.953201 GGGACGTCCATAAGGTACG 57.047 57.895 34.40 7.22 41.27 3.67
99 101 1.106285 GGGACGTCCATAAGGTACGT 58.894 55.000 34.40 12.30 46.67 3.57
100 102 1.202336 GGGACGTCCATAAGGTACGTG 60.202 57.143 34.40 0.00 45.22 4.49
101 103 1.745087 GGACGTCCATAAGGTACGTGA 59.255 52.381 29.75 0.00 45.22 4.35
102 104 2.478539 GGACGTCCATAAGGTACGTGAC 60.479 54.545 29.75 7.87 45.22 3.67
111 113 1.843992 AGGTACGTGACGAACAACAC 58.156 50.000 13.70 0.00 0.00 3.32
173 175 2.029964 GGACACGGCCGAGTTTGA 59.970 61.111 35.90 0.00 0.00 2.69
186 188 3.067461 CCGAGTTTGATGTTTTCCACCAA 59.933 43.478 0.00 0.00 0.00 3.67
187 189 4.290155 CGAGTTTGATGTTTTCCACCAAG 58.710 43.478 0.00 0.00 0.00 3.61
188 190 4.036262 CGAGTTTGATGTTTTCCACCAAGA 59.964 41.667 0.00 0.00 0.00 3.02
189 191 5.278463 CGAGTTTGATGTTTTCCACCAAGAT 60.278 40.000 0.00 0.00 0.00 2.40
418 423 1.205820 GTTTTACCGTGACGCTGCC 59.794 57.895 0.00 0.00 0.00 4.85
419 424 1.962306 TTTTACCGTGACGCTGCCC 60.962 57.895 0.00 0.00 0.00 5.36
420 425 3.887335 TTTACCGTGACGCTGCCCC 62.887 63.158 0.00 0.00 0.00 5.80
425 430 4.329545 GTGACGCTGCCCCAGGAA 62.330 66.667 0.00 0.00 31.21 3.36
426 431 3.329889 TGACGCTGCCCCAGGAAT 61.330 61.111 0.00 0.00 31.21 3.01
427 432 2.825836 GACGCTGCCCCAGGAATG 60.826 66.667 0.00 0.00 31.21 2.67
432 437 3.430471 TGCCCCAGGAATGCAGAT 58.570 55.556 0.00 0.00 0.00 2.90
433 438 1.699137 TGCCCCAGGAATGCAGATT 59.301 52.632 0.00 0.00 0.00 2.40
434 439 0.396139 TGCCCCAGGAATGCAGATTC 60.396 55.000 0.00 0.00 37.80 2.52
435 440 0.106318 GCCCCAGGAATGCAGATTCT 60.106 55.000 0.00 0.00 38.48 2.40
436 441 1.688772 CCCCAGGAATGCAGATTCTG 58.311 55.000 9.40 9.40 38.48 3.02
437 442 1.064166 CCCCAGGAATGCAGATTCTGT 60.064 52.381 14.90 0.00 38.48 3.41
438 443 2.022195 CCCAGGAATGCAGATTCTGTG 58.978 52.381 14.90 4.43 38.48 3.66
439 444 2.356432 CCCAGGAATGCAGATTCTGTGA 60.356 50.000 14.90 3.10 38.48 3.58
440 445 2.943690 CCAGGAATGCAGATTCTGTGAG 59.056 50.000 14.90 0.00 38.48 3.51
441 446 2.355132 CAGGAATGCAGATTCTGTGAGC 59.645 50.000 14.90 1.39 38.48 4.26
442 447 2.239150 AGGAATGCAGATTCTGTGAGCT 59.761 45.455 14.90 0.00 38.48 4.09
443 448 3.015327 GGAATGCAGATTCTGTGAGCTT 58.985 45.455 14.90 2.62 38.48 3.74
444 449 4.080695 AGGAATGCAGATTCTGTGAGCTTA 60.081 41.667 14.90 0.00 38.48 3.09
445 450 4.820716 GGAATGCAGATTCTGTGAGCTTAT 59.179 41.667 14.90 0.00 38.48 1.73
446 451 5.277876 GGAATGCAGATTCTGTGAGCTTATG 60.278 44.000 14.90 0.00 38.48 1.90
447 452 2.941064 TGCAGATTCTGTGAGCTTATGC 59.059 45.455 14.90 0.00 34.98 3.14
448 453 2.941064 GCAGATTCTGTGAGCTTATGCA 59.059 45.455 14.90 0.00 36.29 3.96
449 454 3.242673 GCAGATTCTGTGAGCTTATGCAC 60.243 47.826 14.90 0.00 36.29 4.57
450 455 3.311871 CAGATTCTGTGAGCTTATGCACC 59.688 47.826 5.46 0.00 42.74 5.01
451 456 2.113860 TTCTGTGAGCTTATGCACCC 57.886 50.000 3.16 0.00 42.74 4.61
452 457 0.108186 TCTGTGAGCTTATGCACCCG 60.108 55.000 3.16 0.00 42.74 5.28
453 458 1.078497 TGTGAGCTTATGCACCCGG 60.078 57.895 0.00 0.00 42.74 5.73
454 459 1.819632 GTGAGCTTATGCACCCGGG 60.820 63.158 22.25 22.25 42.74 5.73
455 460 2.902343 GAGCTTATGCACCCGGGC 60.902 66.667 24.08 8.36 42.74 6.13
456 461 4.506255 AGCTTATGCACCCGGGCC 62.506 66.667 24.08 13.26 42.74 5.80
457 462 4.506255 GCTTATGCACCCGGGCCT 62.506 66.667 24.08 5.01 39.41 5.19
458 463 2.203209 CTTATGCACCCGGGCCTC 60.203 66.667 24.08 10.65 0.00 4.70
459 464 3.012119 TTATGCACCCGGGCCTCA 61.012 61.111 24.08 16.72 0.00 3.86
460 465 3.338275 TTATGCACCCGGGCCTCAC 62.338 63.158 24.08 6.09 0.00 3.51
462 467 2.882403 TATGCACCCGGGCCTCACTA 62.882 60.000 24.08 1.79 0.00 2.74
463 468 3.480133 GCACCCGGGCCTCACTAT 61.480 66.667 24.08 0.00 0.00 2.12
464 469 2.822399 CACCCGGGCCTCACTATC 59.178 66.667 24.08 0.00 0.00 2.08
465 470 2.446036 ACCCGGGCCTCACTATCC 60.446 66.667 24.08 0.00 0.00 2.59
466 471 2.122813 CCCGGGCCTCACTATCCT 60.123 66.667 8.08 0.00 0.00 3.24
467 472 1.155390 CCCGGGCCTCACTATCCTA 59.845 63.158 8.08 0.00 0.00 2.94
468 473 0.471211 CCCGGGCCTCACTATCCTAA 60.471 60.000 8.08 0.00 0.00 2.69
469 474 0.680061 CCGGGCCTCACTATCCTAAC 59.320 60.000 0.84 0.00 0.00 2.34
470 475 0.314302 CGGGCCTCACTATCCTAACG 59.686 60.000 0.84 0.00 0.00 3.18
471 476 0.033642 GGGCCTCACTATCCTAACGC 59.966 60.000 0.84 0.00 0.00 4.84
472 477 1.041437 GGCCTCACTATCCTAACGCT 58.959 55.000 0.00 0.00 0.00 5.07
473 478 1.000052 GGCCTCACTATCCTAACGCTC 60.000 57.143 0.00 0.00 0.00 5.03
474 479 1.000052 GCCTCACTATCCTAACGCTCC 60.000 57.143 0.00 0.00 0.00 4.70
475 480 2.307768 CCTCACTATCCTAACGCTCCA 58.692 52.381 0.00 0.00 0.00 3.86
476 481 2.894126 CCTCACTATCCTAACGCTCCAT 59.106 50.000 0.00 0.00 0.00 3.41
477 482 3.322254 CCTCACTATCCTAACGCTCCATT 59.678 47.826 0.00 0.00 0.00 3.16
478 483 4.302455 CTCACTATCCTAACGCTCCATTG 58.698 47.826 0.00 0.00 0.00 2.82
479 484 3.704566 TCACTATCCTAACGCTCCATTGT 59.295 43.478 0.00 0.00 0.00 2.71
480 485 4.161565 TCACTATCCTAACGCTCCATTGTT 59.838 41.667 0.00 0.00 0.00 2.83
481 486 4.271049 CACTATCCTAACGCTCCATTGTTG 59.729 45.833 0.00 0.00 0.00 3.33
482 487 1.448985 TCCTAACGCTCCATTGTTGC 58.551 50.000 0.00 0.00 0.00 4.17
483 488 1.003118 TCCTAACGCTCCATTGTTGCT 59.997 47.619 0.00 0.00 0.00 3.91
484 489 1.812571 CCTAACGCTCCATTGTTGCTT 59.187 47.619 0.00 0.00 0.00 3.91
485 490 2.228822 CCTAACGCTCCATTGTTGCTTT 59.771 45.455 0.00 0.00 0.00 3.51
486 491 2.138596 AACGCTCCATTGTTGCTTTG 57.861 45.000 0.00 0.00 0.00 2.77
487 492 1.317613 ACGCTCCATTGTTGCTTTGA 58.682 45.000 0.00 0.00 0.00 2.69
488 493 1.267806 ACGCTCCATTGTTGCTTTGAG 59.732 47.619 0.00 0.00 0.00 3.02
489 494 1.536766 CGCTCCATTGTTGCTTTGAGA 59.463 47.619 0.00 0.00 0.00 3.27
490 495 2.163010 CGCTCCATTGTTGCTTTGAGAT 59.837 45.455 0.00 0.00 0.00 2.75
491 496 3.730061 CGCTCCATTGTTGCTTTGAGATC 60.730 47.826 0.00 0.00 0.00 2.75
492 497 3.442977 GCTCCATTGTTGCTTTGAGATCT 59.557 43.478 0.00 0.00 0.00 2.75
493 498 4.674623 GCTCCATTGTTGCTTTGAGATCTG 60.675 45.833 0.00 0.00 0.00 2.90
494 499 4.401022 TCCATTGTTGCTTTGAGATCTGT 58.599 39.130 0.00 0.00 0.00 3.41
495 500 4.216902 TCCATTGTTGCTTTGAGATCTGTG 59.783 41.667 0.00 0.00 0.00 3.66
496 501 3.631145 TTGTTGCTTTGAGATCTGTGC 57.369 42.857 0.00 0.00 0.00 4.57
497 502 2.854963 TGTTGCTTTGAGATCTGTGCT 58.145 42.857 0.00 0.00 0.00 4.40
498 503 4.006780 TGTTGCTTTGAGATCTGTGCTA 57.993 40.909 0.00 0.00 0.00 3.49
499 504 3.748048 TGTTGCTTTGAGATCTGTGCTAC 59.252 43.478 0.00 6.70 0.00 3.58
500 505 3.683365 TGCTTTGAGATCTGTGCTACA 57.317 42.857 0.00 0.00 0.00 2.74
501 506 3.329386 TGCTTTGAGATCTGTGCTACAC 58.671 45.455 0.00 0.00 34.56 2.90
502 507 3.244181 TGCTTTGAGATCTGTGCTACACA 60.244 43.478 0.00 0.00 42.45 3.72
503 508 3.748048 GCTTTGAGATCTGTGCTACACAA 59.252 43.478 0.00 0.00 44.08 3.33
504 509 4.377841 GCTTTGAGATCTGTGCTACACAAC 60.378 45.833 0.00 0.00 44.08 3.32
505 510 4.607293 TTGAGATCTGTGCTACACAACT 57.393 40.909 0.00 2.36 44.08 3.16
506 511 5.722021 TTGAGATCTGTGCTACACAACTA 57.278 39.130 0.00 0.00 44.08 2.24
507 512 5.060662 TGAGATCTGTGCTACACAACTAC 57.939 43.478 0.00 0.00 44.08 2.73
508 513 4.082190 TGAGATCTGTGCTACACAACTACC 60.082 45.833 0.00 0.00 44.08 3.18
509 514 4.090090 AGATCTGTGCTACACAACTACCT 58.910 43.478 0.00 0.00 44.08 3.08
510 515 4.528596 AGATCTGTGCTACACAACTACCTT 59.471 41.667 0.00 0.00 44.08 3.50
511 516 5.715279 AGATCTGTGCTACACAACTACCTTA 59.285 40.000 0.00 0.00 44.08 2.69
512 517 5.995565 TCTGTGCTACACAACTACCTTAT 57.004 39.130 1.64 0.00 44.08 1.73
513 518 6.354794 TCTGTGCTACACAACTACCTTATT 57.645 37.500 1.64 0.00 44.08 1.40
514 519 7.470935 TCTGTGCTACACAACTACCTTATTA 57.529 36.000 1.64 0.00 44.08 0.98
515 520 7.318141 TCTGTGCTACACAACTACCTTATTAC 58.682 38.462 1.64 0.00 44.08 1.89
516 521 6.995364 TGTGCTACACAACTACCTTATTACA 58.005 36.000 0.00 0.00 41.69 2.41
517 522 7.617225 TGTGCTACACAACTACCTTATTACAT 58.383 34.615 0.00 0.00 41.69 2.29
518 523 7.547722 TGTGCTACACAACTACCTTATTACATG 59.452 37.037 0.00 0.00 41.69 3.21
519 524 7.011109 GTGCTACACAACTACCTTATTACATGG 59.989 40.741 0.00 0.00 34.08 3.66
520 525 7.093245 TGCTACACAACTACCTTATTACATGGA 60.093 37.037 0.00 0.00 0.00 3.41
521 526 7.767198 GCTACACAACTACCTTATTACATGGAA 59.233 37.037 0.00 0.00 0.00 3.53
522 527 9.832445 CTACACAACTACCTTATTACATGGAAT 57.168 33.333 8.55 8.55 0.00 3.01
524 529 9.528489 ACACAACTACCTTATTACATGGAATTT 57.472 29.630 8.85 0.00 0.00 1.82
556 561 9.638239 TTTTTGTTCCTCTCATATAAAACATGC 57.362 29.630 0.00 0.00 0.00 4.06
557 562 6.942532 TGTTCCTCTCATATAAAACATGCC 57.057 37.500 0.00 0.00 0.00 4.40
558 563 6.662755 TGTTCCTCTCATATAAAACATGCCT 58.337 36.000 0.00 0.00 0.00 4.75
559 564 7.118723 TGTTCCTCTCATATAAAACATGCCTT 58.881 34.615 0.00 0.00 0.00 4.35
560 565 7.067372 TGTTCCTCTCATATAAAACATGCCTTG 59.933 37.037 0.00 0.00 0.00 3.61
561 566 6.899089 TCCTCTCATATAAAACATGCCTTGA 58.101 36.000 0.00 0.00 0.00 3.02
562 567 7.345691 TCCTCTCATATAAAACATGCCTTGAA 58.654 34.615 0.00 0.00 0.00 2.69
563 568 7.283127 TCCTCTCATATAAAACATGCCTTGAAC 59.717 37.037 0.00 0.00 0.00 3.18
564 569 7.284034 CCTCTCATATAAAACATGCCTTGAACT 59.716 37.037 0.00 0.00 0.00 3.01
565 570 8.579850 TCTCATATAAAACATGCCTTGAACTT 57.420 30.769 0.00 0.00 0.00 2.66
566 571 8.677300 TCTCATATAAAACATGCCTTGAACTTC 58.323 33.333 0.00 0.00 0.00 3.01
567 572 8.347004 TCATATAAAACATGCCTTGAACTTCA 57.653 30.769 0.00 0.00 0.00 3.02
568 573 8.801299 TCATATAAAACATGCCTTGAACTTCAA 58.199 29.630 4.16 4.16 34.79 2.69
569 574 9.421806 CATATAAAACATGCCTTGAACTTCAAA 57.578 29.630 5.72 0.00 35.73 2.69
570 575 7.713764 ATAAAACATGCCTTGAACTTCAAAC 57.286 32.000 5.72 2.26 35.73 2.93
571 576 5.343307 AAACATGCCTTGAACTTCAAACT 57.657 34.783 5.72 0.00 35.73 2.66
572 577 5.343307 AACATGCCTTGAACTTCAAACTT 57.657 34.783 5.72 0.00 35.73 2.66
573 578 5.343307 ACATGCCTTGAACTTCAAACTTT 57.657 34.783 5.72 0.00 35.73 2.66
574 579 5.111293 ACATGCCTTGAACTTCAAACTTTG 58.889 37.500 5.72 0.00 35.73 2.77
575 580 3.520569 TGCCTTGAACTTCAAACTTTGC 58.479 40.909 5.72 4.77 35.73 3.68
576 581 3.056250 TGCCTTGAACTTCAAACTTTGCA 60.056 39.130 5.72 6.86 35.73 4.08
577 582 3.553105 GCCTTGAACTTCAAACTTTGCAG 59.447 43.478 5.72 0.17 35.73 4.41
578 583 4.747810 CCTTGAACTTCAAACTTTGCAGT 58.252 39.130 5.72 1.39 38.79 4.40
579 584 5.678616 GCCTTGAACTTCAAACTTTGCAGTA 60.679 40.000 7.16 0.00 36.12 2.74
580 585 5.743872 CCTTGAACTTCAAACTTTGCAGTAC 59.256 40.000 7.16 0.00 36.12 2.73
581 586 5.888691 TGAACTTCAAACTTTGCAGTACA 57.111 34.783 7.16 0.00 36.12 2.90
582 587 6.260870 TGAACTTCAAACTTTGCAGTACAA 57.739 33.333 7.16 0.00 36.12 2.41
583 588 6.090129 TGAACTTCAAACTTTGCAGTACAAC 58.910 36.000 7.16 2.19 36.12 3.32
584 589 5.637006 ACTTCAAACTTTGCAGTACAACA 57.363 34.783 5.14 0.00 35.39 3.33
585 590 6.207691 ACTTCAAACTTTGCAGTACAACAT 57.792 33.333 5.14 0.00 35.39 2.71
586 591 7.328277 ACTTCAAACTTTGCAGTACAACATA 57.672 32.000 5.14 0.00 35.39 2.29
587 592 7.767261 ACTTCAAACTTTGCAGTACAACATAA 58.233 30.769 5.14 0.00 35.39 1.90
588 593 7.700656 ACTTCAAACTTTGCAGTACAACATAAC 59.299 33.333 5.14 0.00 35.39 1.89
589 594 7.328277 TCAAACTTTGCAGTACAACATAACT 57.672 32.000 0.00 0.00 38.23 2.24
590 595 7.767261 TCAAACTTTGCAGTACAACATAACTT 58.233 30.769 0.00 0.00 38.23 2.66
591 596 8.247562 TCAAACTTTGCAGTACAACATAACTTT 58.752 29.630 0.00 0.00 38.23 2.66
592 597 7.985634 AACTTTGCAGTACAACATAACTTTG 57.014 32.000 0.00 0.00 38.23 2.77
593 598 7.095695 ACTTTGCAGTACAACATAACTTTGT 57.904 32.000 0.00 0.00 38.23 2.83
594 599 8.215926 ACTTTGCAGTACAACATAACTTTGTA 57.784 30.769 0.00 0.00 38.23 2.41
595 600 8.679100 ACTTTGCAGTACAACATAACTTTGTAA 58.321 29.630 0.00 0.00 40.30 2.41
596 601 8.844441 TTTGCAGTACAACATAACTTTGTAAC 57.156 30.769 0.00 0.00 40.30 2.50
597 602 7.795482 TGCAGTACAACATAACTTTGTAACT 57.205 32.000 0.00 0.00 40.30 2.24
598 603 8.890124 TGCAGTACAACATAACTTTGTAACTA 57.110 30.769 0.00 0.00 40.30 2.24
599 604 8.984764 TGCAGTACAACATAACTTTGTAACTAG 58.015 33.333 0.00 0.00 40.30 2.57
600 605 9.199982 GCAGTACAACATAACTTTGTAACTAGA 57.800 33.333 0.00 0.00 40.30 2.43
728 733 9.533831 AAATCTGTAAGTTTTATCCCACATTCT 57.466 29.630 0.00 0.00 34.30 2.40
730 735 9.614792 ATCTGTAAGTTTTATCCCACATTCTAC 57.385 33.333 0.00 0.00 33.76 2.59
731 736 8.598916 TCTGTAAGTTTTATCCCACATTCTACA 58.401 33.333 0.00 0.00 33.76 2.74
732 737 9.396022 CTGTAAGTTTTATCCCACATTCTACAT 57.604 33.333 0.00 0.00 0.00 2.29
739 744 8.677148 TTTATCCCACATTCTACATAGAAAGC 57.323 34.615 5.48 0.00 44.63 3.51
740 745 5.957771 TCCCACATTCTACATAGAAAGCT 57.042 39.130 5.48 0.00 44.63 3.74
741 746 6.313519 TCCCACATTCTACATAGAAAGCTT 57.686 37.500 5.48 0.00 44.63 3.74
742 747 6.721318 TCCCACATTCTACATAGAAAGCTTT 58.279 36.000 12.53 12.53 44.63 3.51
743 748 6.599244 TCCCACATTCTACATAGAAAGCTTTG 59.401 38.462 18.30 5.25 44.63 2.77
744 749 6.375455 CCCACATTCTACATAGAAAGCTTTGT 59.625 38.462 18.30 15.90 44.63 2.83
745 750 7.094205 CCCACATTCTACATAGAAAGCTTTGTT 60.094 37.037 18.30 7.23 44.63 2.83
746 751 7.752239 CCACATTCTACATAGAAAGCTTTGTTG 59.248 37.037 18.30 15.03 44.63 3.33
747 752 8.292448 CACATTCTACATAGAAAGCTTTGTTGT 58.708 33.333 18.30 19.36 44.63 3.32
748 753 8.292448 ACATTCTACATAGAAAGCTTTGTTGTG 58.708 33.333 18.30 16.43 44.63 3.33
749 754 6.241207 TCTACATAGAAAGCTTTGTTGTGC 57.759 37.500 18.30 0.25 37.47 4.57
750 755 5.997746 TCTACATAGAAAGCTTTGTTGTGCT 59.002 36.000 18.30 8.71 41.82 4.40
751 756 4.863491 ACATAGAAAGCTTTGTTGTGCTG 58.137 39.130 18.30 8.38 39.71 4.41
752 757 2.214387 AGAAAGCTTTGTTGTGCTGC 57.786 45.000 18.30 0.00 39.71 5.25
753 758 1.477700 AGAAAGCTTTGTTGTGCTGCA 59.522 42.857 18.30 0.00 39.71 4.41
754 759 2.094078 AGAAAGCTTTGTTGTGCTGCAA 60.094 40.909 18.30 0.00 39.71 4.08
755 760 2.383368 AAGCTTTGTTGTGCTGCAAA 57.617 40.000 2.77 0.00 39.71 3.68
759 764 3.644805 CTTTGTTGTGCTGCAAAGTTG 57.355 42.857 2.77 0.00 43.69 3.16
760 765 3.252400 CTTTGTTGTGCTGCAAAGTTGA 58.748 40.909 2.77 0.00 43.69 3.18
761 766 3.309961 TTGTTGTGCTGCAAAGTTGAA 57.690 38.095 2.77 0.00 39.03 2.69
762 767 3.309961 TGTTGTGCTGCAAAGTTGAAA 57.690 38.095 2.77 0.00 39.03 2.69
763 768 3.252400 TGTTGTGCTGCAAAGTTGAAAG 58.748 40.909 2.77 0.00 39.03 2.62
764 769 3.253230 GTTGTGCTGCAAAGTTGAAAGT 58.747 40.909 2.77 0.00 39.03 2.66
765 770 4.082517 TGTTGTGCTGCAAAGTTGAAAGTA 60.083 37.500 2.77 0.00 39.03 2.24
766 771 4.027572 TGTGCTGCAAAGTTGAAAGTAC 57.972 40.909 2.77 2.52 33.16 2.73
767 772 3.441922 TGTGCTGCAAAGTTGAAAGTACA 59.558 39.130 2.77 11.39 37.00 2.90
768 773 4.082517 TGTGCTGCAAAGTTGAAAGTACAA 60.083 37.500 2.77 0.00 36.69 2.41
769 774 4.862018 GTGCTGCAAAGTTGAAAGTACAAA 59.138 37.500 2.77 0.00 32.96 2.83
770 775 5.347364 GTGCTGCAAAGTTGAAAGTACAAAA 59.653 36.000 2.77 0.00 32.96 2.44
771 776 5.928839 TGCTGCAAAGTTGAAAGTACAAAAA 59.071 32.000 0.00 0.00 0.00 1.94
772 777 6.128688 TGCTGCAAAGTTGAAAGTACAAAAAC 60.129 34.615 0.00 0.00 0.00 2.43
773 778 6.128688 GCTGCAAAGTTGAAAGTACAAAAACA 60.129 34.615 0.00 0.00 0.00 2.83
774 779 7.412891 GCTGCAAAGTTGAAAGTACAAAAACAT 60.413 33.333 0.00 0.00 0.00 2.71
775 780 7.737395 TGCAAAGTTGAAAGTACAAAAACATG 58.263 30.769 0.00 0.00 0.00 3.21
776 781 7.386299 TGCAAAGTTGAAAGTACAAAAACATGT 59.614 29.630 0.00 0.00 37.32 3.21
777 782 8.227119 GCAAAGTTGAAAGTACAAAAACATGTT 58.773 29.630 4.92 4.92 34.75 2.71
778 783 9.739786 CAAAGTTGAAAGTACAAAAACATGTTC 57.260 29.630 12.39 0.00 34.75 3.18
779 784 9.705290 AAAGTTGAAAGTACAAAAACATGTTCT 57.295 25.926 12.39 0.00 33.04 3.01
821 826 8.466086 AAAGAGAAAATTATTTGCACGAATCC 57.534 30.769 0.00 0.00 0.00 3.01
822 827 7.396540 AGAGAAAATTATTTGCACGAATCCT 57.603 32.000 0.00 0.00 0.00 3.24
823 828 7.253422 AGAGAAAATTATTTGCACGAATCCTG 58.747 34.615 0.00 0.00 0.00 3.86
824 829 7.121168 AGAGAAAATTATTTGCACGAATCCTGA 59.879 33.333 0.00 0.00 0.00 3.86
825 830 7.775120 AGAAAATTATTTGCACGAATCCTGAT 58.225 30.769 0.00 0.00 0.00 2.90
826 831 7.703621 AGAAAATTATTTGCACGAATCCTGATG 59.296 33.333 0.00 0.00 0.00 3.07
827 832 2.857592 ATTTGCACGAATCCTGATGC 57.142 45.000 0.00 0.00 38.59 3.91
828 833 1.532523 TTTGCACGAATCCTGATGCA 58.467 45.000 0.00 0.00 45.94 3.96
829 834 2.771435 TGCACGAATCCTGATGCAG 58.229 52.632 0.00 0.00 42.92 4.41
830 835 0.249955 TGCACGAATCCTGATGCAGA 59.750 50.000 0.00 0.00 42.92 4.26
831 836 1.338960 TGCACGAATCCTGATGCAGAA 60.339 47.619 0.00 0.00 42.92 3.02
832 837 1.739466 GCACGAATCCTGATGCAGAAA 59.261 47.619 0.00 0.00 38.00 2.52
833 838 2.357009 GCACGAATCCTGATGCAGAAAT 59.643 45.455 0.00 0.00 38.00 2.17
834 839 3.791122 GCACGAATCCTGATGCAGAAATG 60.791 47.826 0.00 0.00 38.00 2.32
835 840 3.624410 CACGAATCCTGATGCAGAAATGA 59.376 43.478 0.00 0.00 32.44 2.57
836 841 3.875727 ACGAATCCTGATGCAGAAATGAG 59.124 43.478 0.00 0.00 32.44 2.90
837 842 3.875727 CGAATCCTGATGCAGAAATGAGT 59.124 43.478 0.00 0.00 32.44 3.41
838 843 4.260661 CGAATCCTGATGCAGAAATGAGTG 60.261 45.833 0.00 0.00 32.44 3.51
839 844 2.995283 TCCTGATGCAGAAATGAGTGG 58.005 47.619 0.00 0.00 32.44 4.00
840 845 2.306805 TCCTGATGCAGAAATGAGTGGT 59.693 45.455 0.00 0.00 32.44 4.16
841 846 3.087031 CCTGATGCAGAAATGAGTGGTT 58.913 45.455 0.00 0.00 32.44 3.67
842 847 3.119602 CCTGATGCAGAAATGAGTGGTTG 60.120 47.826 0.00 0.00 32.44 3.77
843 848 2.821378 TGATGCAGAAATGAGTGGTTGG 59.179 45.455 0.00 0.00 0.00 3.77
844 849 2.655090 TGCAGAAATGAGTGGTTGGA 57.345 45.000 0.00 0.00 0.00 3.53
845 850 3.159213 TGCAGAAATGAGTGGTTGGAT 57.841 42.857 0.00 0.00 0.00 3.41
846 851 4.299586 TGCAGAAATGAGTGGTTGGATA 57.700 40.909 0.00 0.00 0.00 2.59
847 852 4.661222 TGCAGAAATGAGTGGTTGGATAA 58.339 39.130 0.00 0.00 0.00 1.75
848 853 4.701651 TGCAGAAATGAGTGGTTGGATAAG 59.298 41.667 0.00 0.00 0.00 1.73
849 854 4.096984 GCAGAAATGAGTGGTTGGATAAGG 59.903 45.833 0.00 0.00 0.00 2.69
850 855 5.500234 CAGAAATGAGTGGTTGGATAAGGA 58.500 41.667 0.00 0.00 0.00 3.36
851 856 5.587844 CAGAAATGAGTGGTTGGATAAGGAG 59.412 44.000 0.00 0.00 0.00 3.69
852 857 5.251700 AGAAATGAGTGGTTGGATAAGGAGT 59.748 40.000 0.00 0.00 0.00 3.85
853 858 6.443849 AGAAATGAGTGGTTGGATAAGGAGTA 59.556 38.462 0.00 0.00 0.00 2.59
854 859 5.615925 ATGAGTGGTTGGATAAGGAGTAC 57.384 43.478 0.00 0.00 0.00 2.73
855 860 3.773119 TGAGTGGTTGGATAAGGAGTACC 59.227 47.826 0.00 0.00 0.00 3.34
856 861 3.113043 AGTGGTTGGATAAGGAGTACCC 58.887 50.000 0.00 0.00 36.73 3.69
857 862 2.112998 TGGTTGGATAAGGAGTACCCG 58.887 52.381 0.00 0.00 40.87 5.28
858 863 1.415289 GGTTGGATAAGGAGTACCCGG 59.585 57.143 0.00 0.00 40.87 5.73
859 864 1.415289 GTTGGATAAGGAGTACCCGGG 59.585 57.143 22.25 22.25 40.87 5.73
860 865 0.638292 TGGATAAGGAGTACCCGGGT 59.362 55.000 32.66 32.66 40.87 5.28
861 866 1.046204 GGATAAGGAGTACCCGGGTG 58.954 60.000 36.97 6.22 40.87 4.61
862 867 0.391966 GATAAGGAGTACCCGGGTGC 59.608 60.000 36.97 34.59 40.87 5.01
863 868 0.325860 ATAAGGAGTACCCGGGTGCA 60.326 55.000 38.49 21.38 40.87 4.57
864 869 0.325860 TAAGGAGTACCCGGGTGCAT 60.326 55.000 38.49 25.22 40.87 3.96
865 870 0.325860 AAGGAGTACCCGGGTGCATA 60.326 55.000 38.49 17.40 40.87 3.14
866 871 0.759436 AGGAGTACCCGGGTGCATAG 60.759 60.000 38.49 7.31 40.87 2.23
867 872 1.746517 GAGTACCCGGGTGCATAGG 59.253 63.158 38.49 6.51 33.14 2.57
868 873 2.110420 GTACCCGGGTGCATAGGC 59.890 66.667 36.97 12.77 41.68 3.93
869 874 2.041301 TACCCGGGTGCATAGGCT 60.041 61.111 36.97 8.21 41.91 4.58
870 875 2.138179 TACCCGGGTGCATAGGCTC 61.138 63.158 36.97 0.00 41.91 4.70
871 876 2.599139 TACCCGGGTGCATAGGCTCT 62.599 60.000 36.97 6.74 41.91 4.09
872 877 1.837051 CCCGGGTGCATAGGCTCTA 60.837 63.158 14.18 0.00 41.91 2.43
873 878 1.407656 CCCGGGTGCATAGGCTCTAA 61.408 60.000 14.18 0.00 41.91 2.10
874 879 0.468226 CCGGGTGCATAGGCTCTAAA 59.532 55.000 0.00 0.00 41.91 1.85
875 880 1.134220 CCGGGTGCATAGGCTCTAAAA 60.134 52.381 0.00 0.00 41.91 1.52
876 881 1.940613 CGGGTGCATAGGCTCTAAAAC 59.059 52.381 0.00 0.00 41.91 2.43
877 882 2.679639 CGGGTGCATAGGCTCTAAAACA 60.680 50.000 0.00 0.00 41.91 2.83
878 883 3.555966 GGGTGCATAGGCTCTAAAACAT 58.444 45.455 0.00 0.00 41.91 2.71
879 884 3.316308 GGGTGCATAGGCTCTAAAACATG 59.684 47.826 0.00 0.00 41.91 3.21
880 885 3.947834 GGTGCATAGGCTCTAAAACATGT 59.052 43.478 0.00 0.00 41.91 3.21
881 886 4.399303 GGTGCATAGGCTCTAAAACATGTT 59.601 41.667 4.92 4.92 41.91 2.71
882 887 5.105756 GGTGCATAGGCTCTAAAACATGTTT 60.106 40.000 18.13 18.13 41.91 2.83
883 888 6.389906 GTGCATAGGCTCTAAAACATGTTTT 58.610 36.000 32.63 32.63 42.11 2.43
884 889 6.528072 GTGCATAGGCTCTAAAACATGTTTTC 59.472 38.462 33.71 21.47 40.89 2.29
885 890 5.739161 GCATAGGCTCTAAAACATGTTTTCG 59.261 40.000 33.71 28.00 39.12 3.46
953 958 1.298667 GTTACTGCGGTCCATGGGT 59.701 57.895 13.02 2.87 0.00 4.51
1028 1040 0.251634 GTTCTCCTCTGCCTCTTGGG 59.748 60.000 0.00 0.00 38.36 4.12
1030 1042 0.178891 TCTCCTCTGCCTCTTGGGTT 60.179 55.000 0.00 0.00 37.43 4.11
1047 1059 3.070748 GGGTTTCTTCTCTTCTCTGTGC 58.929 50.000 0.00 0.00 0.00 4.57
1073 1085 4.610945 CACAATCTTCCACAAAACCTCAC 58.389 43.478 0.00 0.00 0.00 3.51
1103 1115 1.480212 CCCACCGCCCATATCTGCTA 61.480 60.000 0.00 0.00 0.00 3.49
1108 1120 0.396435 CGCCCATATCTGCTACCCAA 59.604 55.000 0.00 0.00 0.00 4.12
1109 1121 1.609061 CGCCCATATCTGCTACCCAAG 60.609 57.143 0.00 0.00 0.00 3.61
1120 1132 1.282157 GCTACCCAAGAGTCCATTGGT 59.718 52.381 9.61 4.03 44.81 3.67
1233 1245 4.780021 ACCATAGATCAGTCCAGACAAACT 59.220 41.667 0.00 0.00 0.00 2.66
1243 1255 2.106511 TCCAGACAAACTAGCAAGCCTT 59.893 45.455 0.00 0.00 0.00 4.35
1278 1290 3.144657 TGCTGCAAGAATCCAAGAGAA 57.855 42.857 0.00 0.00 34.07 2.87
1282 1294 2.376518 TGCAAGAATCCAAGAGAAGGGT 59.623 45.455 0.00 0.00 0.00 4.34
1356 1368 0.937699 CGTTGCAGGTTCTTCGTCGA 60.938 55.000 0.00 0.00 0.00 4.20
1401 1413 2.196595 CAATCCCTAGTTGGTCCTGGA 58.803 52.381 0.00 0.00 0.00 3.86
1436 1448 3.067461 AGTTCTTGATAGCGCTCCACTAG 59.933 47.826 16.34 12.85 0.00 2.57
1437 1449 2.932261 TCTTGATAGCGCTCCACTAGA 58.068 47.619 16.34 14.97 0.00 2.43
1438 1450 3.288092 TCTTGATAGCGCTCCACTAGAA 58.712 45.455 16.34 0.00 0.00 2.10
1445 1457 2.621055 AGCGCTCCACTAGAAGTAGATG 59.379 50.000 2.64 0.00 0.00 2.90
1459 1471 0.894835 TAGATGTGAGGTTGCTCGCA 59.105 50.000 0.00 0.00 46.10 5.10
1519 1531 3.072211 GGTACAGTGGTTAGGTTGCTTC 58.928 50.000 0.00 0.00 0.00 3.86
1547 1559 1.913419 GTTCTCCTTGGATACCCACCA 59.087 52.381 0.00 0.00 43.41 4.17
1548 1560 1.580059 TCTCCTTGGATACCCACCAC 58.420 55.000 0.00 0.00 43.41 4.16
1549 1561 1.203376 TCTCCTTGGATACCCACCACA 60.203 52.381 0.00 0.00 43.41 4.17
1550 1562 0.988832 TCCTTGGATACCCACCACAC 59.011 55.000 0.00 0.00 43.41 3.82
1551 1563 0.034477 CCTTGGATACCCACCACACC 60.034 60.000 0.00 0.00 43.41 4.16
1552 1564 0.695924 CTTGGATACCCACCACACCA 59.304 55.000 0.00 0.00 43.41 4.17
1568 1580 2.019951 CCAAGCAAGCAAGCAAGCG 61.020 57.895 3.19 0.00 40.15 4.68
1597 1609 2.069273 CACCTGAAATGTGTCGGAGTC 58.931 52.381 0.00 0.00 0.00 3.36
1598 1610 1.002087 ACCTGAAATGTGTCGGAGTCC 59.998 52.381 0.00 0.00 0.00 3.85
1599 1611 1.001974 CCTGAAATGTGTCGGAGTCCA 59.998 52.381 10.49 0.00 0.00 4.02
1600 1612 2.341257 CTGAAATGTGTCGGAGTCCAG 58.659 52.381 10.49 2.19 0.00 3.86
1601 1613 1.691976 TGAAATGTGTCGGAGTCCAGT 59.308 47.619 10.49 0.00 0.00 4.00
1602 1614 2.894765 TGAAATGTGTCGGAGTCCAGTA 59.105 45.455 10.49 0.00 0.00 2.74
1603 1615 3.513912 TGAAATGTGTCGGAGTCCAGTAT 59.486 43.478 10.49 0.00 0.00 2.12
1604 1616 4.020573 TGAAATGTGTCGGAGTCCAGTATT 60.021 41.667 10.49 0.00 0.00 1.89
1605 1617 3.802948 ATGTGTCGGAGTCCAGTATTC 57.197 47.619 10.49 0.00 0.00 1.75
1610 1622 2.101082 GTCGGAGTCCAGTATTCCCTTC 59.899 54.545 10.49 0.00 30.10 3.46
1618 1630 2.366916 CCAGTATTCCCTTCGATGCTCT 59.633 50.000 0.00 0.00 0.00 4.09
1627 1639 3.452474 CCTTCGATGCTCTTGGTTCTAG 58.548 50.000 0.00 0.00 0.00 2.43
1628 1640 3.452474 CTTCGATGCTCTTGGTTCTAGG 58.548 50.000 0.00 0.00 0.00 3.02
1645 1657 2.867109 AGGGACTGATTTGTGGTGAG 57.133 50.000 0.00 0.00 37.18 3.51
1652 1664 5.169992 ACTGATTTGTGGTGAGATCATCA 57.830 39.130 0.00 0.00 34.02 3.07
1708 1720 3.286329 ACAACAGATGGCATGCATCTA 57.714 42.857 23.40 8.49 37.30 1.98
1720 1732 4.450053 GCATGCATCTATAAGGAGGGATC 58.550 47.826 14.21 0.00 0.00 3.36
1739 1751 2.160205 TCCATCGTTAGATAGCCGAGG 58.840 52.381 0.00 0.00 34.85 4.63
1788 1801 5.763876 ACCTTCTCTTAGCCATTTACAGT 57.236 39.130 0.00 0.00 0.00 3.55
1789 1802 6.869206 ACCTTCTCTTAGCCATTTACAGTA 57.131 37.500 0.00 0.00 0.00 2.74
1790 1803 6.641474 ACCTTCTCTTAGCCATTTACAGTAC 58.359 40.000 0.00 0.00 0.00 2.73
1791 1804 6.440965 ACCTTCTCTTAGCCATTTACAGTACT 59.559 38.462 0.00 0.00 0.00 2.73
1792 1805 6.981559 CCTTCTCTTAGCCATTTACAGTACTC 59.018 42.308 0.00 0.00 0.00 2.59
1879 1892 7.412063 TGAAAATCATGTCTCTTTATGCATCG 58.588 34.615 0.19 0.00 0.00 3.84
1881 1894 3.133691 TCATGTCTCTTTATGCATCGGC 58.866 45.455 0.19 0.00 41.68 5.54
1952 1965 7.166804 GTCTCACTCGATTTATTTCTGCTACTC 59.833 40.741 0.00 0.00 0.00 2.59
2198 2211 1.357334 GGCGACGGCACAAAAGAAA 59.643 52.632 17.49 0.00 42.47 2.52
2486 2531 5.371115 TGTACTAGCTTGAAAATTGCACC 57.629 39.130 1.04 0.00 0.00 5.01
2523 2571 8.947115 GCTTTTAGGTTTATGAGTTACTGTGAT 58.053 33.333 0.00 0.00 0.00 3.06
2541 2589 7.806180 ACTGTGATATTATGGATATTAGGGGC 58.194 38.462 0.00 0.00 31.00 5.80
2550 2598 6.718593 ATGGATATTAGGGGCTTATGTCAA 57.281 37.500 0.00 0.00 0.00 3.18
2562 2610 8.945193 AGGGGCTTATGTCAAGTTAATTCTATA 58.055 33.333 0.00 0.00 0.00 1.31
2584 2643 2.435437 GCCAGGGCACATGGATTAAAAT 59.565 45.455 5.20 0.00 40.51 1.82
2591 2650 5.585844 GGGCACATGGATTAAAATTTTCTGG 59.414 40.000 6.72 0.00 0.00 3.86
2593 2652 5.585844 GCACATGGATTAAAATTTTCTGGGG 59.414 40.000 6.72 0.00 0.00 4.96
2727 2786 2.151307 TACTCCAGGCTCTGACCCGT 62.151 60.000 4.00 0.00 32.44 5.28
2748 2809 4.452251 TCTCTTCGGCGCCCCCTA 62.452 66.667 23.46 3.11 0.00 3.53
2932 3007 4.227134 CCATCCCCCGCAGTCGAG 62.227 72.222 0.00 0.00 38.10 4.04
3183 3258 2.507769 CTGCGTGATCTGCGAGCA 60.508 61.111 12.98 0.00 36.34 4.26
3226 3301 2.231235 GTGCCCTCAAAATCCACGAAAT 59.769 45.455 0.00 0.00 0.00 2.17
3275 3350 2.899339 GCCTGCTTGATCCTCGCC 60.899 66.667 0.00 0.00 0.00 5.54
3309 3384 2.933834 CCTCCGTTTCCCCACCCT 60.934 66.667 0.00 0.00 0.00 4.34
3377 3462 1.290324 GAGCTCAGCTTGGTCGACA 59.710 57.895 18.91 0.27 39.88 4.35
3379 3464 1.300931 GCTCAGCTTGGTCGACACA 60.301 57.895 18.91 10.22 0.00 3.72
3451 3536 2.670789 CGAGCAGAGTGTCTTCTTCCTG 60.671 54.545 0.00 0.00 0.00 3.86
3493 3578 2.338984 GCGGCCGACGGAATCTAT 59.661 61.111 33.48 0.00 44.51 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.756630 CCTGTGCCAAAAGGCAAC 57.243 55.556 11.23 6.47 46.87 4.17
11 12 0.752054 TTGAAGCCTGTGCCAAAAGG 59.248 50.000 0.00 0.00 38.69 3.11
12 13 1.410153 AGTTGAAGCCTGTGCCAAAAG 59.590 47.619 0.00 0.00 38.69 2.27
13 14 1.136695 CAGTTGAAGCCTGTGCCAAAA 59.863 47.619 0.00 0.00 38.69 2.44
14 15 0.746063 CAGTTGAAGCCTGTGCCAAA 59.254 50.000 0.00 0.00 38.69 3.28
18 19 2.125461 GTTTCAGTTGAAGCCTGTGC 57.875 50.000 0.00 0.00 35.21 4.57
28 29 4.552166 ATCGACAGTTTGGTTTCAGTTG 57.448 40.909 0.00 0.00 0.00 3.16
42 43 5.508153 CCTCCAAGGATTGTACTATCGACAG 60.508 48.000 10.55 0.00 46.99 3.51
43 44 4.341235 CCTCCAAGGATTGTACTATCGACA 59.659 45.833 10.55 0.00 46.99 4.35
78 80 1.392589 GTACCTTATGGACGTCCCGA 58.607 55.000 31.19 16.53 37.93 5.14
86 88 2.819019 TGTTCGTCACGTACCTTATGGA 59.181 45.455 4.36 0.00 37.04 3.41
93 95 0.854705 GGTGTTGTTCGTCACGTACC 59.145 55.000 4.36 0.00 35.67 3.34
94 96 1.558741 TGGTGTTGTTCGTCACGTAC 58.441 50.000 0.00 0.00 35.67 3.67
95 97 2.223758 TGATGGTGTTGTTCGTCACGTA 60.224 45.455 0.00 0.00 35.67 3.57
96 98 1.214367 GATGGTGTTGTTCGTCACGT 58.786 50.000 0.00 0.00 35.67 4.49
97 99 1.070843 GTGATGGTGTTGTTCGTCACG 60.071 52.381 0.00 0.00 39.24 4.35
98 100 2.210116 AGTGATGGTGTTGTTCGTCAC 58.790 47.619 7.38 7.38 45.31 3.67
99 101 2.479837 GAGTGATGGTGTTGTTCGTCA 58.520 47.619 0.00 0.00 0.00 4.35
100 102 1.455786 CGAGTGATGGTGTTGTTCGTC 59.544 52.381 0.00 0.00 0.00 4.20
101 103 1.067974 TCGAGTGATGGTGTTGTTCGT 59.932 47.619 0.00 0.00 0.00 3.85
102 104 1.721389 CTCGAGTGATGGTGTTGTTCG 59.279 52.381 3.62 0.00 0.00 3.95
111 113 0.526211 TTGGACGACTCGAGTGATGG 59.474 55.000 25.58 11.61 0.00 3.51
186 188 6.159398 AGAGACAAAGGATTTACCATCCATCT 59.841 38.462 3.72 1.29 40.61 2.90
187 189 6.360618 AGAGACAAAGGATTTACCATCCATC 58.639 40.000 3.72 0.00 40.61 3.51
188 190 6.332976 AGAGACAAAGGATTTACCATCCAT 57.667 37.500 3.72 0.00 40.61 3.41
189 191 5.779241 AGAGACAAAGGATTTACCATCCA 57.221 39.130 3.72 0.00 40.61 3.41
418 423 2.022195 CACAGAATCTGCATTCCTGGG 58.978 52.381 10.62 2.99 39.58 4.45
419 424 2.943690 CTCACAGAATCTGCATTCCTGG 59.056 50.000 10.62 0.00 39.58 4.45
420 425 2.355132 GCTCACAGAATCTGCATTCCTG 59.645 50.000 10.62 0.00 39.58 3.86
421 426 2.239150 AGCTCACAGAATCTGCATTCCT 59.761 45.455 10.62 0.00 39.58 3.36
422 427 2.641305 AGCTCACAGAATCTGCATTCC 58.359 47.619 10.62 0.00 39.58 3.01
423 428 5.749620 CATAAGCTCACAGAATCTGCATTC 58.250 41.667 10.62 0.00 39.10 2.67
424 429 4.036498 GCATAAGCTCACAGAATCTGCATT 59.964 41.667 10.62 1.24 37.91 3.56
425 430 3.564644 GCATAAGCTCACAGAATCTGCAT 59.435 43.478 10.62 0.00 37.91 3.96
426 431 2.941064 GCATAAGCTCACAGAATCTGCA 59.059 45.455 10.62 0.00 37.91 4.41
427 432 2.941064 TGCATAAGCTCACAGAATCTGC 59.059 45.455 10.62 0.00 42.74 4.26
428 433 3.311871 GGTGCATAAGCTCACAGAATCTG 59.688 47.826 8.98 8.98 42.74 2.90
429 434 3.539604 GGTGCATAAGCTCACAGAATCT 58.460 45.455 5.72 0.00 42.74 2.40
430 435 2.615912 GGGTGCATAAGCTCACAGAATC 59.384 50.000 5.72 0.00 42.74 2.52
431 436 2.648059 GGGTGCATAAGCTCACAGAAT 58.352 47.619 5.72 0.00 42.74 2.40
432 437 1.675714 CGGGTGCATAAGCTCACAGAA 60.676 52.381 5.72 0.00 42.74 3.02
433 438 0.108186 CGGGTGCATAAGCTCACAGA 60.108 55.000 5.72 0.00 42.74 3.41
434 439 1.091771 CCGGGTGCATAAGCTCACAG 61.092 60.000 5.72 0.00 42.74 3.66
435 440 1.078497 CCGGGTGCATAAGCTCACA 60.078 57.895 5.72 0.00 42.74 3.58
436 441 1.819632 CCCGGGTGCATAAGCTCAC 60.820 63.158 14.18 0.00 42.74 3.51
437 442 2.589540 CCCGGGTGCATAAGCTCA 59.410 61.111 14.18 0.00 42.74 4.26
438 443 2.902343 GCCCGGGTGCATAAGCTC 60.902 66.667 24.63 0.00 42.74 4.09
439 444 4.506255 GGCCCGGGTGCATAAGCT 62.506 66.667 24.63 0.00 42.74 3.74
440 445 4.506255 AGGCCCGGGTGCATAAGC 62.506 66.667 24.63 4.14 42.57 3.09
441 446 2.203209 GAGGCCCGGGTGCATAAG 60.203 66.667 24.63 0.00 0.00 1.73
442 447 3.012119 TGAGGCCCGGGTGCATAA 61.012 61.111 24.63 0.00 0.00 1.90
443 448 2.882403 TAGTGAGGCCCGGGTGCATA 62.882 60.000 24.63 5.26 0.00 3.14
446 451 3.462199 GATAGTGAGGCCCGGGTGC 62.462 68.421 24.63 12.43 0.00 5.01
447 452 2.808206 GGATAGTGAGGCCCGGGTG 61.808 68.421 24.63 0.00 0.00 4.61
448 453 1.661990 TAGGATAGTGAGGCCCGGGT 61.662 60.000 24.63 1.57 0.00 5.28
449 454 0.471211 TTAGGATAGTGAGGCCCGGG 60.471 60.000 19.09 19.09 0.00 5.73
450 455 0.680061 GTTAGGATAGTGAGGCCCGG 59.320 60.000 0.00 0.00 0.00 5.73
451 456 0.314302 CGTTAGGATAGTGAGGCCCG 59.686 60.000 0.00 0.00 0.00 6.13
452 457 0.033642 GCGTTAGGATAGTGAGGCCC 59.966 60.000 0.00 0.00 0.00 5.80
453 458 1.000052 GAGCGTTAGGATAGTGAGGCC 60.000 57.143 0.00 0.00 0.00 5.19
454 459 1.000052 GGAGCGTTAGGATAGTGAGGC 60.000 57.143 0.00 0.00 0.00 4.70
455 460 2.307768 TGGAGCGTTAGGATAGTGAGG 58.692 52.381 0.00 0.00 0.00 3.86
456 461 4.202161 ACAATGGAGCGTTAGGATAGTGAG 60.202 45.833 0.00 0.00 0.00 3.51
457 462 3.704566 ACAATGGAGCGTTAGGATAGTGA 59.295 43.478 0.00 0.00 0.00 3.41
458 463 4.060038 ACAATGGAGCGTTAGGATAGTG 57.940 45.455 0.00 0.00 0.00 2.74
459 464 4.442706 CAACAATGGAGCGTTAGGATAGT 58.557 43.478 0.00 0.00 0.00 2.12
460 465 3.248602 GCAACAATGGAGCGTTAGGATAG 59.751 47.826 0.00 0.00 0.00 2.08
461 466 3.118408 AGCAACAATGGAGCGTTAGGATA 60.118 43.478 0.00 0.00 0.00 2.59
462 467 2.017049 GCAACAATGGAGCGTTAGGAT 58.983 47.619 0.00 0.00 0.00 3.24
463 468 1.003118 AGCAACAATGGAGCGTTAGGA 59.997 47.619 0.00 0.00 0.00 2.94
464 469 1.453155 AGCAACAATGGAGCGTTAGG 58.547 50.000 0.00 0.00 0.00 2.69
465 470 3.058293 TCAAAGCAACAATGGAGCGTTAG 60.058 43.478 1.08 0.00 0.00 2.34
466 471 2.881513 TCAAAGCAACAATGGAGCGTTA 59.118 40.909 1.08 0.00 0.00 3.18
467 472 1.680735 TCAAAGCAACAATGGAGCGTT 59.319 42.857 0.00 0.00 0.00 4.84
468 473 1.267806 CTCAAAGCAACAATGGAGCGT 59.732 47.619 0.00 0.00 0.00 5.07
469 474 1.536766 TCTCAAAGCAACAATGGAGCG 59.463 47.619 0.00 0.00 0.00 5.03
470 475 3.442977 AGATCTCAAAGCAACAATGGAGC 59.557 43.478 0.00 0.00 0.00 4.70
471 476 4.458295 ACAGATCTCAAAGCAACAATGGAG 59.542 41.667 0.00 0.00 0.00 3.86
472 477 4.216902 CACAGATCTCAAAGCAACAATGGA 59.783 41.667 0.00 0.00 0.00 3.41
473 478 4.482386 CACAGATCTCAAAGCAACAATGG 58.518 43.478 0.00 0.00 0.00 3.16
474 479 3.918591 GCACAGATCTCAAAGCAACAATG 59.081 43.478 0.00 0.00 0.00 2.82
475 480 3.825014 AGCACAGATCTCAAAGCAACAAT 59.175 39.130 0.00 0.00 0.00 2.71
476 481 3.216800 AGCACAGATCTCAAAGCAACAA 58.783 40.909 0.00 0.00 0.00 2.83
477 482 2.854963 AGCACAGATCTCAAAGCAACA 58.145 42.857 0.00 0.00 0.00 3.33
478 483 3.748048 TGTAGCACAGATCTCAAAGCAAC 59.252 43.478 0.00 0.00 0.00 4.17
479 484 3.748048 GTGTAGCACAGATCTCAAAGCAA 59.252 43.478 0.00 0.00 34.08 3.91
480 485 3.244181 TGTGTAGCACAGATCTCAAAGCA 60.244 43.478 0.00 0.00 39.62 3.91
481 486 3.329386 TGTGTAGCACAGATCTCAAAGC 58.671 45.455 0.00 0.00 39.62 3.51
482 487 4.993584 AGTTGTGTAGCACAGATCTCAAAG 59.006 41.667 0.00 0.00 45.39 2.77
483 488 4.960938 AGTTGTGTAGCACAGATCTCAAA 58.039 39.130 0.00 0.00 45.39 2.69
484 489 4.607293 AGTTGTGTAGCACAGATCTCAA 57.393 40.909 0.00 0.00 45.39 3.02
485 490 4.082190 GGTAGTTGTGTAGCACAGATCTCA 60.082 45.833 0.00 0.00 45.39 3.27
486 491 4.158764 AGGTAGTTGTGTAGCACAGATCTC 59.841 45.833 0.00 0.00 45.39 2.75
487 492 4.090090 AGGTAGTTGTGTAGCACAGATCT 58.910 43.478 2.17 0.00 45.39 2.75
488 493 4.457834 AGGTAGTTGTGTAGCACAGATC 57.542 45.455 2.17 0.00 45.39 2.75
489 494 4.891992 AAGGTAGTTGTGTAGCACAGAT 57.108 40.909 2.17 0.00 45.39 2.90
490 495 5.995565 ATAAGGTAGTTGTGTAGCACAGA 57.004 39.130 2.17 0.00 45.39 3.41
491 496 7.094631 TGTAATAAGGTAGTTGTGTAGCACAG 58.905 38.462 2.17 0.00 45.39 3.66
492 497 6.995364 TGTAATAAGGTAGTTGTGTAGCACA 58.005 36.000 0.00 0.00 43.02 4.57
493 498 7.011109 CCATGTAATAAGGTAGTTGTGTAGCAC 59.989 40.741 0.00 0.00 34.56 4.40
494 499 7.045416 CCATGTAATAAGGTAGTTGTGTAGCA 58.955 38.462 0.00 0.00 0.00 3.49
495 500 7.270047 TCCATGTAATAAGGTAGTTGTGTAGC 58.730 38.462 0.00 0.00 0.00 3.58
496 501 9.832445 ATTCCATGTAATAAGGTAGTTGTGTAG 57.168 33.333 0.00 0.00 0.00 2.74
498 503 9.528489 AAATTCCATGTAATAAGGTAGTTGTGT 57.472 29.630 0.00 0.00 0.00 3.72
530 535 9.638239 GCATGTTTTATATGAGAGGAACAAAAA 57.362 29.630 0.00 0.00 31.69 1.94
531 536 8.250332 GGCATGTTTTATATGAGAGGAACAAAA 58.750 33.333 0.00 0.00 31.69 2.44
532 537 7.615365 AGGCATGTTTTATATGAGAGGAACAAA 59.385 33.333 0.00 0.00 31.69 2.83
533 538 7.118723 AGGCATGTTTTATATGAGAGGAACAA 58.881 34.615 0.00 0.00 31.69 2.83
534 539 6.662755 AGGCATGTTTTATATGAGAGGAACA 58.337 36.000 0.00 0.00 0.00 3.18
535 540 7.283127 TCAAGGCATGTTTTATATGAGAGGAAC 59.717 37.037 0.00 0.00 0.00 3.62
536 541 7.345691 TCAAGGCATGTTTTATATGAGAGGAA 58.654 34.615 0.00 0.00 0.00 3.36
537 542 6.899089 TCAAGGCATGTTTTATATGAGAGGA 58.101 36.000 0.00 0.00 0.00 3.71
538 543 7.284034 AGTTCAAGGCATGTTTTATATGAGAGG 59.716 37.037 0.00 0.00 0.00 3.69
539 544 8.218338 AGTTCAAGGCATGTTTTATATGAGAG 57.782 34.615 0.00 0.00 0.00 3.20
540 545 8.579850 AAGTTCAAGGCATGTTTTATATGAGA 57.420 30.769 0.00 0.00 0.00 3.27
541 546 8.461222 TGAAGTTCAAGGCATGTTTTATATGAG 58.539 33.333 2.20 0.00 0.00 2.90
542 547 8.347004 TGAAGTTCAAGGCATGTTTTATATGA 57.653 30.769 2.20 0.00 0.00 2.15
543 548 8.984891 TTGAAGTTCAAGGCATGTTTTATATG 57.015 30.769 14.35 0.00 31.83 1.78
544 549 9.423061 GTTTGAAGTTCAAGGCATGTTTTATAT 57.577 29.630 17.36 0.00 37.70 0.86
545 550 8.637986 AGTTTGAAGTTCAAGGCATGTTTTATA 58.362 29.630 17.36 0.00 37.70 0.98
546 551 7.500141 AGTTTGAAGTTCAAGGCATGTTTTAT 58.500 30.769 17.36 0.00 37.70 1.40
547 552 6.872920 AGTTTGAAGTTCAAGGCATGTTTTA 58.127 32.000 17.36 0.00 37.70 1.52
548 553 5.733676 AGTTTGAAGTTCAAGGCATGTTTT 58.266 33.333 17.36 0.00 37.70 2.43
549 554 5.343307 AGTTTGAAGTTCAAGGCATGTTT 57.657 34.783 17.36 0.00 37.70 2.83
550 555 5.343307 AAGTTTGAAGTTCAAGGCATGTT 57.657 34.783 17.36 4.85 37.70 2.71
551 556 5.111293 CAAAGTTTGAAGTTCAAGGCATGT 58.889 37.500 17.36 1.47 37.70 3.21
552 557 4.025480 GCAAAGTTTGAAGTTCAAGGCATG 60.025 41.667 19.82 15.53 37.70 4.06
553 558 4.122046 GCAAAGTTTGAAGTTCAAGGCAT 58.878 39.130 19.82 6.34 37.70 4.40
554 559 3.056250 TGCAAAGTTTGAAGTTCAAGGCA 60.056 39.130 19.82 18.05 37.70 4.75
555 560 3.520569 TGCAAAGTTTGAAGTTCAAGGC 58.479 40.909 19.82 16.15 37.70 4.35
563 568 7.915397 AGTTATGTTGTACTGCAAAGTTTGAAG 59.085 33.333 20.32 20.32 42.36 3.02
564 569 7.767261 AGTTATGTTGTACTGCAAAGTTTGAA 58.233 30.769 19.82 8.06 39.03 2.69
565 570 7.328277 AGTTATGTTGTACTGCAAAGTTTGA 57.672 32.000 19.82 3.95 39.03 2.69
566 571 7.985634 AAGTTATGTTGTACTGCAAAGTTTG 57.014 32.000 11.41 11.41 39.03 2.93
567 572 8.032451 ACAAAGTTATGTTGTACTGCAAAGTTT 58.968 29.630 0.00 4.19 37.44 2.66
568 573 7.543756 ACAAAGTTATGTTGTACTGCAAAGTT 58.456 30.769 0.00 0.00 37.44 2.66
569 574 7.095695 ACAAAGTTATGTTGTACTGCAAAGT 57.904 32.000 0.00 0.00 37.44 2.66
570 575 8.953990 GTTACAAAGTTATGTTGTACTGCAAAG 58.046 33.333 0.00 0.00 40.30 2.77
571 576 8.679100 AGTTACAAAGTTATGTTGTACTGCAAA 58.321 29.630 0.00 0.00 40.30 3.68
572 577 8.215926 AGTTACAAAGTTATGTTGTACTGCAA 57.784 30.769 0.00 0.00 40.30 4.08
573 578 7.795482 AGTTACAAAGTTATGTTGTACTGCA 57.205 32.000 0.00 0.00 40.30 4.41
574 579 9.199982 TCTAGTTACAAAGTTATGTTGTACTGC 57.800 33.333 0.00 0.00 40.30 4.40
702 707 9.533831 AGAATGTGGGATAAAACTTACAGATTT 57.466 29.630 0.00 0.00 0.00 2.17
704 709 9.614792 GTAGAATGTGGGATAAAACTTACAGAT 57.385 33.333 0.00 0.00 0.00 2.90
705 710 8.598916 TGTAGAATGTGGGATAAAACTTACAGA 58.401 33.333 0.00 0.00 0.00 3.41
706 711 8.786826 TGTAGAATGTGGGATAAAACTTACAG 57.213 34.615 0.00 0.00 0.00 2.74
713 718 9.120538 GCTTTCTATGTAGAATGTGGGATAAAA 57.879 33.333 13.77 0.00 41.52 1.52
714 719 8.494433 AGCTTTCTATGTAGAATGTGGGATAAA 58.506 33.333 13.77 0.00 41.52 1.40
715 720 8.034313 AGCTTTCTATGTAGAATGTGGGATAA 57.966 34.615 13.77 0.00 41.52 1.75
716 721 7.618019 AGCTTTCTATGTAGAATGTGGGATA 57.382 36.000 13.77 0.00 41.52 2.59
717 722 6.506538 AGCTTTCTATGTAGAATGTGGGAT 57.493 37.500 13.77 0.00 41.52 3.85
718 723 5.957771 AGCTTTCTATGTAGAATGTGGGA 57.042 39.130 13.77 0.00 41.52 4.37
719 724 6.375455 ACAAAGCTTTCTATGTAGAATGTGGG 59.625 38.462 9.23 0.00 41.52 4.61
720 725 7.383102 ACAAAGCTTTCTATGTAGAATGTGG 57.617 36.000 9.23 0.00 41.52 4.17
721 726 8.292448 ACAACAAAGCTTTCTATGTAGAATGTG 58.708 33.333 9.23 2.02 41.52 3.21
722 727 8.292448 CACAACAAAGCTTTCTATGTAGAATGT 58.708 33.333 9.23 3.70 41.52 2.71
723 728 7.272084 GCACAACAAAGCTTTCTATGTAGAATG 59.728 37.037 9.23 3.07 41.52 2.67
724 729 7.175641 AGCACAACAAAGCTTTCTATGTAGAAT 59.824 33.333 9.23 0.00 41.52 2.40
725 730 6.486657 AGCACAACAAAGCTTTCTATGTAGAA 59.513 34.615 9.23 0.00 38.01 2.10
726 731 5.997746 AGCACAACAAAGCTTTCTATGTAGA 59.002 36.000 9.23 0.00 38.01 2.59
727 732 6.082338 CAGCACAACAAAGCTTTCTATGTAG 58.918 40.000 9.23 10.01 39.50 2.74
728 733 5.562696 GCAGCACAACAAAGCTTTCTATGTA 60.563 40.000 9.23 0.00 39.50 2.29
729 734 4.794003 GCAGCACAACAAAGCTTTCTATGT 60.794 41.667 9.23 11.49 39.50 2.29
730 735 3.671928 GCAGCACAACAAAGCTTTCTATG 59.328 43.478 9.23 10.85 39.50 2.23
731 736 3.318839 TGCAGCACAACAAAGCTTTCTAT 59.681 39.130 9.23 0.00 39.50 1.98
732 737 2.687425 TGCAGCACAACAAAGCTTTCTA 59.313 40.909 9.23 0.00 39.50 2.10
733 738 1.477700 TGCAGCACAACAAAGCTTTCT 59.522 42.857 9.23 0.00 39.50 2.52
734 739 1.925229 TGCAGCACAACAAAGCTTTC 58.075 45.000 9.23 0.00 39.50 2.62
735 740 2.383368 TTGCAGCACAACAAAGCTTT 57.617 40.000 5.69 5.69 39.50 3.51
736 741 2.273557 CTTTGCAGCACAACAAAGCTT 58.726 42.857 0.00 0.00 44.32 3.74
737 742 1.930567 CTTTGCAGCACAACAAAGCT 58.069 45.000 0.00 0.00 44.32 3.74
740 745 3.309961 TCAACTTTGCAGCACAACAAA 57.690 38.095 0.00 0.00 38.23 2.83
741 746 3.309961 TTCAACTTTGCAGCACAACAA 57.690 38.095 0.00 0.00 38.23 2.83
742 747 3.252400 CTTTCAACTTTGCAGCACAACA 58.748 40.909 0.00 0.00 38.23 3.33
743 748 3.253230 ACTTTCAACTTTGCAGCACAAC 58.747 40.909 0.00 0.00 38.23 3.32
744 749 3.591196 ACTTTCAACTTTGCAGCACAA 57.409 38.095 0.00 0.00 36.13 3.33
745 750 3.441922 TGTACTTTCAACTTTGCAGCACA 59.558 39.130 0.00 0.00 0.00 4.57
746 751 4.027572 TGTACTTTCAACTTTGCAGCAC 57.972 40.909 0.00 0.00 0.00 4.40
747 752 4.710423 TTGTACTTTCAACTTTGCAGCA 57.290 36.364 0.00 0.00 0.00 4.41
748 753 6.128688 TGTTTTTGTACTTTCAACTTTGCAGC 60.129 34.615 0.00 0.00 0.00 5.25
749 754 7.344910 TGTTTTTGTACTTTCAACTTTGCAG 57.655 32.000 0.00 0.00 0.00 4.41
750 755 7.386299 ACATGTTTTTGTACTTTCAACTTTGCA 59.614 29.630 0.00 0.00 0.00 4.08
751 756 7.738345 ACATGTTTTTGTACTTTCAACTTTGC 58.262 30.769 0.00 0.00 0.00 3.68
752 757 9.739786 GAACATGTTTTTGTACTTTCAACTTTG 57.260 29.630 13.36 0.00 0.00 2.77
753 758 9.705290 AGAACATGTTTTTGTACTTTCAACTTT 57.295 25.926 13.36 0.00 0.00 2.66
795 800 8.925700 GGATTCGTGCAAATAATTTTCTCTTTT 58.074 29.630 0.00 0.00 0.00 2.27
796 801 8.306761 AGGATTCGTGCAAATAATTTTCTCTTT 58.693 29.630 0.00 0.00 0.00 2.52
797 802 7.756722 CAGGATTCGTGCAAATAATTTTCTCTT 59.243 33.333 0.00 0.00 0.00 2.85
798 803 7.121168 TCAGGATTCGTGCAAATAATTTTCTCT 59.879 33.333 1.45 0.00 0.00 3.10
799 804 7.250569 TCAGGATTCGTGCAAATAATTTTCTC 58.749 34.615 1.45 0.00 0.00 2.87
800 805 7.156876 TCAGGATTCGTGCAAATAATTTTCT 57.843 32.000 1.45 0.00 0.00 2.52
801 806 7.515684 GCATCAGGATTCGTGCAAATAATTTTC 60.516 37.037 1.45 0.00 37.52 2.29
802 807 6.256321 GCATCAGGATTCGTGCAAATAATTTT 59.744 34.615 1.45 0.00 37.52 1.82
803 808 5.750067 GCATCAGGATTCGTGCAAATAATTT 59.250 36.000 1.45 0.00 37.52 1.82
804 809 5.163530 TGCATCAGGATTCGTGCAAATAATT 60.164 36.000 1.45 0.00 43.83 1.40
805 810 4.338964 TGCATCAGGATTCGTGCAAATAAT 59.661 37.500 1.45 0.00 43.83 1.28
806 811 3.693578 TGCATCAGGATTCGTGCAAATAA 59.306 39.130 1.45 0.00 43.83 1.40
807 812 3.277715 TGCATCAGGATTCGTGCAAATA 58.722 40.909 1.45 0.00 43.83 1.40
808 813 2.093890 TGCATCAGGATTCGTGCAAAT 58.906 42.857 1.45 0.00 43.83 2.32
809 814 1.469703 CTGCATCAGGATTCGTGCAAA 59.530 47.619 1.45 0.00 45.77 3.68
810 815 1.089112 CTGCATCAGGATTCGTGCAA 58.911 50.000 1.45 0.00 45.77 4.08
811 816 0.249955 TCTGCATCAGGATTCGTGCA 59.750 50.000 1.45 0.00 44.50 4.57
812 817 1.372582 TTCTGCATCAGGATTCGTGC 58.627 50.000 1.45 0.00 38.05 5.34
813 818 3.624410 TCATTTCTGCATCAGGATTCGTG 59.376 43.478 0.00 0.00 31.51 4.35
814 819 3.875727 CTCATTTCTGCATCAGGATTCGT 59.124 43.478 0.00 0.00 31.51 3.85
815 820 3.875727 ACTCATTTCTGCATCAGGATTCG 59.124 43.478 0.00 0.00 31.51 3.34
816 821 4.036498 CCACTCATTTCTGCATCAGGATTC 59.964 45.833 0.00 0.00 31.51 2.52
817 822 3.952323 CCACTCATTTCTGCATCAGGATT 59.048 43.478 0.00 0.00 31.51 3.01
818 823 3.053842 ACCACTCATTTCTGCATCAGGAT 60.054 43.478 0.00 0.00 31.51 3.24
819 824 2.306805 ACCACTCATTTCTGCATCAGGA 59.693 45.455 0.00 0.00 31.51 3.86
820 825 2.719739 ACCACTCATTTCTGCATCAGG 58.280 47.619 0.00 0.00 31.51 3.86
821 826 3.119602 CCAACCACTCATTTCTGCATCAG 60.120 47.826 0.00 0.00 0.00 2.90
822 827 2.821378 CCAACCACTCATTTCTGCATCA 59.179 45.455 0.00 0.00 0.00 3.07
823 828 3.084039 TCCAACCACTCATTTCTGCATC 58.916 45.455 0.00 0.00 0.00 3.91
824 829 3.159213 TCCAACCACTCATTTCTGCAT 57.841 42.857 0.00 0.00 0.00 3.96
825 830 2.655090 TCCAACCACTCATTTCTGCA 57.345 45.000 0.00 0.00 0.00 4.41
826 831 4.096984 CCTTATCCAACCACTCATTTCTGC 59.903 45.833 0.00 0.00 0.00 4.26
827 832 5.500234 TCCTTATCCAACCACTCATTTCTG 58.500 41.667 0.00 0.00 0.00 3.02
828 833 5.251700 ACTCCTTATCCAACCACTCATTTCT 59.748 40.000 0.00 0.00 0.00 2.52
829 834 5.501156 ACTCCTTATCCAACCACTCATTTC 58.499 41.667 0.00 0.00 0.00 2.17
830 835 5.520748 ACTCCTTATCCAACCACTCATTT 57.479 39.130 0.00 0.00 0.00 2.32
831 836 5.104485 GGTACTCCTTATCCAACCACTCATT 60.104 44.000 0.00 0.00 0.00 2.57
832 837 4.409247 GGTACTCCTTATCCAACCACTCAT 59.591 45.833 0.00 0.00 0.00 2.90
833 838 3.773119 GGTACTCCTTATCCAACCACTCA 59.227 47.826 0.00 0.00 0.00 3.41
834 839 3.134262 GGGTACTCCTTATCCAACCACTC 59.866 52.174 0.00 0.00 29.98 3.51
835 840 3.113043 GGGTACTCCTTATCCAACCACT 58.887 50.000 0.00 0.00 29.98 4.00
836 841 2.159000 CGGGTACTCCTTATCCAACCAC 60.159 54.545 0.00 0.00 28.52 4.16
837 842 2.112998 CGGGTACTCCTTATCCAACCA 58.887 52.381 0.00 0.00 28.52 3.67
838 843 1.415289 CCGGGTACTCCTTATCCAACC 59.585 57.143 0.00 0.00 28.52 3.77
839 844 1.415289 CCCGGGTACTCCTTATCCAAC 59.585 57.143 14.18 0.00 28.52 3.77
840 845 1.008693 ACCCGGGTACTCCTTATCCAA 59.991 52.381 29.13 0.00 28.52 3.53
841 846 0.638292 ACCCGGGTACTCCTTATCCA 59.362 55.000 29.13 0.00 28.52 3.41
842 847 1.046204 CACCCGGGTACTCCTTATCC 58.954 60.000 29.72 0.00 0.00 2.59
843 848 0.391966 GCACCCGGGTACTCCTTATC 59.608 60.000 29.72 3.11 0.00 1.75
844 849 0.325860 TGCACCCGGGTACTCCTTAT 60.326 55.000 29.72 0.00 0.00 1.73
845 850 0.325860 ATGCACCCGGGTACTCCTTA 60.326 55.000 29.72 4.16 0.00 2.69
846 851 0.325860 TATGCACCCGGGTACTCCTT 60.326 55.000 29.72 14.89 0.00 3.36
847 852 0.759436 CTATGCACCCGGGTACTCCT 60.759 60.000 29.72 13.70 0.00 3.69
848 853 1.746517 CTATGCACCCGGGTACTCC 59.253 63.158 29.72 15.52 0.00 3.85
849 854 1.746517 CCTATGCACCCGGGTACTC 59.253 63.158 29.72 18.85 0.00 2.59
850 855 2.440817 GCCTATGCACCCGGGTACT 61.441 63.158 29.72 16.37 37.47 2.73
851 856 2.110420 GCCTATGCACCCGGGTAC 59.890 66.667 29.72 23.40 37.47 3.34
852 857 2.041301 AGCCTATGCACCCGGGTA 60.041 61.111 29.72 13.39 41.13 3.69
853 858 2.599139 TAGAGCCTATGCACCCGGGT 62.599 60.000 24.16 24.16 41.13 5.28
854 859 1.407656 TTAGAGCCTATGCACCCGGG 61.408 60.000 22.25 22.25 41.13 5.73
855 860 0.468226 TTTAGAGCCTATGCACCCGG 59.532 55.000 0.00 0.00 41.13 5.73
856 861 1.940613 GTTTTAGAGCCTATGCACCCG 59.059 52.381 0.00 0.00 41.13 5.28
857 862 2.999331 TGTTTTAGAGCCTATGCACCC 58.001 47.619 0.00 0.00 41.13 4.61
858 863 3.947834 ACATGTTTTAGAGCCTATGCACC 59.052 43.478 0.00 0.00 41.13 5.01
859 864 5.567138 AACATGTTTTAGAGCCTATGCAC 57.433 39.130 4.92 0.00 41.13 4.57
860 865 6.588719 AAAACATGTTTTAGAGCCTATGCA 57.411 33.333 30.29 0.00 40.61 3.96
861 866 5.739161 CGAAAACATGTTTTAGAGCCTATGC 59.261 40.000 31.09 16.24 42.26 3.14
862 867 6.258160 CCGAAAACATGTTTTAGAGCCTATG 58.742 40.000 32.83 17.61 42.26 2.23
863 868 5.163652 GCCGAAAACATGTTTTAGAGCCTAT 60.164 40.000 32.83 14.06 42.26 2.57
864 869 4.155280 GCCGAAAACATGTTTTAGAGCCTA 59.845 41.667 32.83 0.00 42.26 3.93
865 870 3.057526 GCCGAAAACATGTTTTAGAGCCT 60.058 43.478 32.83 15.32 42.26 4.58
866 871 3.057526 AGCCGAAAACATGTTTTAGAGCC 60.058 43.478 32.83 23.14 42.26 4.70
867 872 3.914364 CAGCCGAAAACATGTTTTAGAGC 59.086 43.478 32.83 30.56 42.26 4.09
868 873 3.914364 GCAGCCGAAAACATGTTTTAGAG 59.086 43.478 32.83 25.51 42.26 2.43
869 874 3.305064 GGCAGCCGAAAACATGTTTTAGA 60.305 43.478 32.83 0.00 42.26 2.10
870 875 2.986479 GGCAGCCGAAAACATGTTTTAG 59.014 45.455 31.09 29.17 42.26 1.85
871 876 2.288518 GGGCAGCCGAAAACATGTTTTA 60.289 45.455 31.09 0.00 42.26 1.52
872 877 1.540146 GGGCAGCCGAAAACATGTTTT 60.540 47.619 31.40 31.40 44.59 2.43
873 878 0.033366 GGGCAGCCGAAAACATGTTT 59.967 50.000 18.13 18.13 0.00 2.83
874 879 1.665442 GGGCAGCCGAAAACATGTT 59.335 52.632 4.92 4.92 0.00 2.71
875 880 2.275380 GGGGCAGCCGAAAACATGT 61.275 57.895 5.00 0.00 0.00 3.21
876 881 2.216750 CTGGGGCAGCCGAAAACATG 62.217 60.000 5.00 0.00 0.00 3.21
877 882 1.978617 CTGGGGCAGCCGAAAACAT 60.979 57.895 5.00 0.00 0.00 2.71
878 883 2.597217 CTGGGGCAGCCGAAAACA 60.597 61.111 5.00 0.00 0.00 2.83
879 884 3.373565 CCTGGGGCAGCCGAAAAC 61.374 66.667 5.00 0.00 0.00 2.43
880 885 2.917897 ATCCTGGGGCAGCCGAAAA 61.918 57.895 5.00 0.00 0.00 2.29
881 886 3.338250 ATCCTGGGGCAGCCGAAA 61.338 61.111 5.00 0.00 0.00 3.46
882 887 4.113815 CATCCTGGGGCAGCCGAA 62.114 66.667 5.00 0.00 0.00 4.30
953 958 3.660177 AGAGAGGGAGAGATGCTATACCA 59.340 47.826 0.00 0.00 0.00 3.25
1028 1040 2.156697 GCGCACAGAGAAGAGAAGAAAC 59.843 50.000 0.30 0.00 0.00 2.78
1030 1042 1.667177 CGCGCACAGAGAAGAGAAGAA 60.667 52.381 8.75 0.00 0.00 2.52
1047 1059 0.040514 TTTGTGGAAGATTGTGCGCG 60.041 50.000 0.00 0.00 0.00 6.86
1091 1103 2.975489 ACTCTTGGGTAGCAGATATGGG 59.025 50.000 0.00 0.00 0.00 4.00
1094 1106 3.928754 TGGACTCTTGGGTAGCAGATAT 58.071 45.455 0.00 0.00 0.00 1.63
1103 1115 0.698818 GGACCAATGGACTCTTGGGT 59.301 55.000 6.16 0.00 46.12 4.51
1108 1120 1.271597 GCTGTTGGACCAATGGACTCT 60.272 52.381 10.83 0.00 0.00 3.24
1109 1121 1.168714 GCTGTTGGACCAATGGACTC 58.831 55.000 10.83 0.00 0.00 3.36
1120 1132 0.250858 CACAGGGTGATGCTGTTGGA 60.251 55.000 0.00 0.00 35.23 3.53
1233 1245 3.521126 AGGAGATCTTCAAAGGCTTGCTA 59.479 43.478 3.21 0.00 32.14 3.49
1243 1255 2.303890 TGCAGCAAGAGGAGATCTTCAA 59.696 45.455 3.21 0.00 45.50 2.69
1302 1314 2.753043 CAAGGCAAGGCAGGCGAT 60.753 61.111 0.00 0.00 39.37 4.58
1356 1368 9.784531 TGATTAACAGAAGAACAGAGAAAGAAT 57.215 29.630 0.00 0.00 0.00 2.40
1401 1413 6.541641 GCTATCAAGAACTCCAAATCATCACT 59.458 38.462 0.00 0.00 0.00 3.41
1436 1448 3.182967 CGAGCAACCTCACATCTACTTC 58.817 50.000 0.00 0.00 38.00 3.01
1437 1449 2.675317 GCGAGCAACCTCACATCTACTT 60.675 50.000 0.00 0.00 38.00 2.24
1438 1450 1.134965 GCGAGCAACCTCACATCTACT 60.135 52.381 0.00 0.00 38.00 2.57
1445 1457 3.414700 CCGTGCGAGCAACCTCAC 61.415 66.667 0.00 0.00 38.00 3.51
1459 1471 3.603158 AAAACAAAAGGCAAGAACCGT 57.397 38.095 0.00 0.00 33.69 4.83
1519 1531 0.895530 TCCAAGGAGAACCAGCTACG 59.104 55.000 0.00 0.00 38.94 3.51
1547 1559 0.103572 CTTGCTTGCTTGCTTGGTGT 59.896 50.000 3.47 0.00 0.00 4.16
1548 1560 1.219522 GCTTGCTTGCTTGCTTGGTG 61.220 55.000 3.47 0.00 0.00 4.17
1549 1561 1.068585 GCTTGCTTGCTTGCTTGGT 59.931 52.632 3.47 0.00 0.00 3.67
1550 1562 2.019951 CGCTTGCTTGCTTGCTTGG 61.020 57.895 3.47 0.00 0.00 3.61
1551 1563 0.872881 AACGCTTGCTTGCTTGCTTG 60.873 50.000 3.47 0.00 0.00 4.01
1552 1564 0.595825 GAACGCTTGCTTGCTTGCTT 60.596 50.000 3.47 0.00 0.00 3.91
1568 1580 3.573967 ACACATTTCAGGTGGGAATGAAC 59.426 43.478 2.49 0.00 40.54 3.18
1597 1609 2.366916 AGAGCATCGAAGGGAATACTGG 59.633 50.000 0.00 0.00 42.67 4.00
1598 1610 3.742433 AGAGCATCGAAGGGAATACTG 57.258 47.619 0.00 0.00 42.67 2.74
1599 1611 3.181461 CCAAGAGCATCGAAGGGAATACT 60.181 47.826 0.00 0.00 42.67 2.12
1600 1612 3.134458 CCAAGAGCATCGAAGGGAATAC 58.866 50.000 0.00 0.00 42.67 1.89
1601 1613 2.771943 ACCAAGAGCATCGAAGGGAATA 59.228 45.455 0.00 0.00 42.67 1.75
1602 1614 1.561542 ACCAAGAGCATCGAAGGGAAT 59.438 47.619 0.00 0.00 42.67 3.01
1603 1615 0.984230 ACCAAGAGCATCGAAGGGAA 59.016 50.000 0.00 0.00 42.67 3.97
1604 1616 0.984230 AACCAAGAGCATCGAAGGGA 59.016 50.000 0.00 0.00 42.67 4.20
1605 1617 1.065854 AGAACCAAGAGCATCGAAGGG 60.066 52.381 0.00 0.00 42.67 3.95
1610 1622 1.757118 TCCCTAGAACCAAGAGCATCG 59.243 52.381 0.00 0.00 42.67 3.84
1618 1630 4.506625 CCACAAATCAGTCCCTAGAACCAA 60.507 45.833 0.00 0.00 0.00 3.67
1627 1639 2.859165 TCTCACCACAAATCAGTCCC 57.141 50.000 0.00 0.00 0.00 4.46
1628 1640 3.942829 TGATCTCACCACAAATCAGTCC 58.057 45.455 0.00 0.00 0.00 3.85
1645 1657 6.998968 AGATCTTCCAAAGTTGTGATGATC 57.001 37.500 18.35 18.35 38.11 2.92
1652 1664 6.530019 ACACAAAAGATCTTCCAAAGTTGT 57.470 33.333 8.78 11.33 0.00 3.32
1653 1665 9.533253 AAATACACAAAAGATCTTCCAAAGTTG 57.467 29.630 8.78 10.69 0.00 3.16
1658 1670 8.581578 GGGTAAAATACACAAAAGATCTTCCAA 58.418 33.333 8.78 0.00 30.72 3.53
1708 1720 5.011982 TCTAACGATGGATCCCTCCTTAT 57.988 43.478 9.90 0.00 42.59 1.73
1720 1732 1.887198 ACCTCGGCTATCTAACGATGG 59.113 52.381 0.00 0.00 35.93 3.51
1739 1751 6.363357 CAGATTAAGCAGCTGTTGGTTTAAAC 59.637 38.462 16.64 9.98 44.75 2.01
1788 1801 6.097412 TCAGCATCTGAAAATCTGCTAGAGTA 59.903 38.462 2.67 0.00 42.79 2.59
1789 1802 5.105023 TCAGCATCTGAAAATCTGCTAGAGT 60.105 40.000 2.67 0.00 42.79 3.24
1790 1803 5.234757 GTCAGCATCTGAAAATCTGCTAGAG 59.765 44.000 2.67 0.00 42.46 2.43
1791 1804 5.105023 AGTCAGCATCTGAAAATCTGCTAGA 60.105 40.000 2.67 1.76 42.46 2.43
1792 1805 5.006844 CAGTCAGCATCTGAAAATCTGCTAG 59.993 44.000 2.67 0.00 42.46 3.42
1879 1892 5.659440 TGGAAAGAATCAACCAAATAGCC 57.341 39.130 0.00 0.00 0.00 3.93
2287 2300 3.391382 CCGCCCTTCTCCTCCGTT 61.391 66.667 0.00 0.00 0.00 4.44
2377 2390 4.787280 CTCTCCACCCCCGCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
2486 2531 9.391006 TCATAAACCTAAAAGCTACCACTAATG 57.609 33.333 0.00 0.00 0.00 1.90
2523 2571 9.514093 TGACATAAGCCCCTAATATCCATAATA 57.486 33.333 0.00 0.00 0.00 0.98
2533 2581 8.282256 AGAATTAACTTGACATAAGCCCCTAAT 58.718 33.333 0.00 0.00 0.00 1.73
2550 2598 4.412199 TGTGCCCTGGCTATAGAATTAACT 59.588 41.667 9.97 0.00 42.51 2.24
2562 2610 0.630673 TTAATCCATGTGCCCTGGCT 59.369 50.000 9.97 0.00 42.51 4.75
2706 2765 0.033011 GGGTCAGAGCCTGGAGTAGA 60.033 60.000 11.76 0.00 31.81 2.59
2709 2768 2.681778 CGGGTCAGAGCCTGGAGT 60.682 66.667 16.76 0.00 32.48 3.85
2727 2786 4.388499 GGGCGCCGAAGAGACCAA 62.388 66.667 22.54 0.00 33.48 3.67
2817 2878 2.217038 AGTCCCCTCGAAGCAGCAA 61.217 57.895 0.00 0.00 0.00 3.91
2828 2889 3.334054 GCCTTGGAGCAGTCCCCT 61.334 66.667 0.00 0.00 43.15 4.79
2926 3001 0.539051 CTGAAGGGGAATGCTCGACT 59.461 55.000 0.00 0.00 0.00 4.18
3249 3324 2.235898 GGATCAAGCAGGCCTATCCTAG 59.764 54.545 20.24 2.88 45.52 3.02
3267 3342 2.444895 GGACAGAGGGGCGAGGAT 60.445 66.667 0.00 0.00 0.00 3.24
3275 3350 2.716017 GGCGAGAGTGGACAGAGGG 61.716 68.421 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.