Multiple sequence alignment - TraesCS5B01G264500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G264500 chr5B 100.000 2495 0 0 1 2495 448602077 448599583 0.000000e+00 4608.0
1 TraesCS5B01G264500 chr5B 87.234 282 27 6 1805 2085 448599909 448599636 1.860000e-81 313.0
2 TraesCS5B01G264500 chr5B 87.234 282 27 6 2169 2442 448600273 448599993 1.860000e-81 313.0
3 TraesCS5B01G264500 chr5D 92.965 2118 103 16 1 2085 375749291 375747187 0.000000e+00 3044.0
4 TraesCS5B01G264500 chr5D 88.358 335 30 6 2169 2495 375747464 375747131 6.470000e-106 394.0
5 TraesCS5B01G264500 chr5A 89.163 2067 144 44 1 2023 476852718 476850688 0.000000e+00 2503.0
6 TraesCS5B01G264500 chr5A 84.793 217 28 3 2169 2381 476850903 476850688 1.940000e-51 213.0
7 TraesCS5B01G264500 chr7A 84.884 86 5 2 417 494 202520842 202520927 2.060000e-11 80.5
8 TraesCS5B01G264500 chr7D 100.000 29 0 0 466 494 192929231 192929259 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G264500 chr5B 448599583 448602077 2494 True 1744.666667 4608 91.489333 1 2495 3 chr5B.!!$R1 2494
1 TraesCS5B01G264500 chr5D 375747131 375749291 2160 True 1719.000000 3044 90.661500 1 2495 2 chr5D.!!$R1 2494
2 TraesCS5B01G264500 chr5A 476850688 476852718 2030 True 1358.000000 2503 86.978000 1 2381 2 chr5A.!!$R1 2380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 928 0.398522 TGTAGATCCGGCCCATGAGT 60.399 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 2204 0.740737 AAAATACGGCTCCAGCATGC 59.259 50.0 10.51 10.51 44.36 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 3.621225 CAGGGAGTGCATCTCGGA 58.379 61.111 9.29 0.00 43.60 4.55
164 165 5.182950 TCATCCTGCACAACGAAAACATTAT 59.817 36.000 0.00 0.00 0.00 1.28
196 198 4.511454 TCACTTGTACTGCTGATTCAACAC 59.489 41.667 0.00 0.00 0.00 3.32
202 204 3.338249 ACTGCTGATTCAACACGCTATT 58.662 40.909 0.00 0.00 0.00 1.73
203 205 3.753272 ACTGCTGATTCAACACGCTATTT 59.247 39.130 0.00 0.00 0.00 1.40
204 206 4.216257 ACTGCTGATTCAACACGCTATTTT 59.784 37.500 0.00 0.00 0.00 1.82
239 247 7.816945 AAATTGCTAGAATACAAATGTGCAC 57.183 32.000 10.75 10.75 0.00 4.57
243 251 4.494199 GCTAGAATACAAATGTGCACCGTC 60.494 45.833 15.69 0.07 0.00 4.79
244 252 3.674997 AGAATACAAATGTGCACCGTCT 58.325 40.909 15.69 2.43 0.00 4.18
315 356 6.595682 ACTTATACAGGCACTTGATAGCATT 58.404 36.000 0.00 0.00 34.60 3.56
349 390 8.116753 CACTGTGTATCCAAATAAGATCGAAAC 58.883 37.037 0.00 0.00 0.00 2.78
353 394 7.010738 GTGTATCCAAATAAGATCGAAACGGAA 59.989 37.037 0.00 0.00 0.00 4.30
359 400 7.340699 CAAATAAGATCGAAACGGAAGAGATG 58.659 38.462 0.00 0.00 0.00 2.90
362 403 3.948473 AGATCGAAACGGAAGAGATGAGA 59.052 43.478 0.00 0.00 0.00 3.27
382 423 4.473444 AGAAGAAGCAAACCCTGAAATGA 58.527 39.130 0.00 0.00 0.00 2.57
661 702 1.820481 GGAGGACGACGAGGAGGAG 60.820 68.421 0.00 0.00 0.00 3.69
670 711 2.490685 GAGGAGGAGCGAACGGAC 59.509 66.667 0.00 0.00 0.00 4.79
768 809 3.338603 CGTGACGCGTTTCGATTTT 57.661 47.368 24.79 0.00 41.67 1.82
842 883 4.116238 GGTTTTCGAAATGCCAAGTTGAA 58.884 39.130 20.45 0.00 0.00 2.69
849 890 0.884704 ATGCCAAGTTGAAGCGACGT 60.885 50.000 3.87 0.00 0.00 4.34
850 891 1.082756 GCCAAGTTGAAGCGACGTG 60.083 57.895 3.87 0.00 0.00 4.49
851 892 1.772063 GCCAAGTTGAAGCGACGTGT 61.772 55.000 3.87 0.00 0.00 4.49
884 925 1.140852 TCTTTGTAGATCCGGCCCATG 59.859 52.381 0.00 0.00 0.00 3.66
887 928 0.398522 TGTAGATCCGGCCCATGAGT 60.399 55.000 0.00 0.00 0.00 3.41
898 939 0.987294 CCCATGAGTTCAGTCCCTGT 59.013 55.000 0.00 0.00 32.61 4.00
928 976 4.497300 CAATCAAAATGTAACAGGGCCTG 58.503 43.478 31.62 31.62 37.52 4.85
1407 1461 1.838073 CGAGGGGGTGCTACAAGGTT 61.838 60.000 0.00 0.00 0.00 3.50
1422 1476 5.228945 ACAAGGTTATACTGAACTGCACT 57.771 39.130 0.00 0.00 0.00 4.40
1505 1559 5.009610 GGCTCTACTTCTGATCTAGGTTCAG 59.990 48.000 14.16 14.16 41.61 3.02
1525 1579 1.272212 GCCTTCTCGGATGGATCTCTC 59.728 57.143 9.17 0.00 33.16 3.20
1559 1613 5.932619 TTTCTAGCTGTTGCCTGTATCTA 57.067 39.130 0.00 0.00 40.80 1.98
1571 1625 9.929180 TGTTGCCTGTATCTATATCTATGAAAC 57.071 33.333 0.00 0.00 0.00 2.78
1576 1630 9.776158 CCTGTATCTATATCTATGAAACGTGAC 57.224 37.037 0.00 0.00 0.00 3.67
1588 1642 4.468643 TGAAACGTGACGGAATAATTTGC 58.531 39.130 10.66 0.00 0.00 3.68
1605 1660 2.346099 TGCGCTTTTATGGTTTGCTC 57.654 45.000 9.73 0.00 0.00 4.26
1684 1741 3.244078 GGTAGTGATCGATATGGGTTGCA 60.244 47.826 0.00 0.00 0.00 4.08
1685 1742 2.838736 AGTGATCGATATGGGTTGCAC 58.161 47.619 0.00 0.00 0.00 4.57
1686 1743 2.435805 AGTGATCGATATGGGTTGCACT 59.564 45.455 0.00 1.83 0.00 4.40
1687 1744 2.545526 GTGATCGATATGGGTTGCACTG 59.454 50.000 0.00 0.00 0.00 3.66
1689 1746 3.071457 TGATCGATATGGGTTGCACTGAT 59.929 43.478 0.00 0.00 0.00 2.90
1690 1747 4.283212 TGATCGATATGGGTTGCACTGATA 59.717 41.667 0.00 0.00 0.00 2.15
1691 1748 4.681074 TCGATATGGGTTGCACTGATAA 57.319 40.909 0.00 0.00 0.00 1.75
1692 1749 4.377021 TCGATATGGGTTGCACTGATAAC 58.623 43.478 0.00 0.00 0.00 1.89
1693 1750 4.100963 TCGATATGGGTTGCACTGATAACT 59.899 41.667 0.00 0.00 0.00 2.24
1698 1755 5.080969 TGGGTTGCACTGATAACTACTAC 57.919 43.478 0.00 0.00 0.00 2.73
1713 1770 8.788325 ATAACTACTACCAGGTCAAAATGTTC 57.212 34.615 0.00 0.00 0.00 3.18
1768 1828 8.025445 GCTTGTTGAAGTTGTATTGAGATGATT 58.975 33.333 0.00 0.00 0.00 2.57
1808 1868 4.641989 TCTCAGGCTTGCAGATAATTTTCC 59.358 41.667 0.00 0.00 0.00 3.13
1841 1901 8.943909 ATACTAAAAGTAATCTTGGAACCTCG 57.056 34.615 0.00 0.00 33.89 4.63
1896 1956 6.418226 TGATTACACGTTTGCATTGGTAAAAC 59.582 34.615 0.00 0.00 30.24 2.43
1897 1957 4.111375 ACACGTTTGCATTGGTAAAACA 57.889 36.364 0.00 0.00 34.23 2.83
1903 1963 6.536941 ACGTTTGCATTGGTAAAACAAAGAAT 59.463 30.769 0.00 0.00 34.23 2.40
1904 1964 7.707035 ACGTTTGCATTGGTAAAACAAAGAATA 59.293 29.630 0.00 0.00 34.23 1.75
1905 1965 8.001549 CGTTTGCATTGGTAAAACAAAGAATAC 58.998 33.333 0.00 0.00 34.23 1.89
1909 1969 8.018520 TGCATTGGTAAAACAAAGAATACTACG 58.981 33.333 0.00 0.00 33.48 3.51
1971 2031 5.068215 TGGTGAGATTGTAAAAAGGGGAA 57.932 39.130 0.00 0.00 0.00 3.97
1985 2045 3.319031 AGGGGAAGGGCTGAATATTTG 57.681 47.619 0.00 0.00 0.00 2.32
1986 2046 2.091111 AGGGGAAGGGCTGAATATTTGG 60.091 50.000 0.00 0.00 0.00 3.28
1987 2047 2.319844 GGGAAGGGCTGAATATTTGGG 58.680 52.381 0.00 0.00 0.00 4.12
1988 2048 2.319844 GGAAGGGCTGAATATTTGGGG 58.680 52.381 0.00 0.00 0.00 4.96
1989 2049 2.091333 GGAAGGGCTGAATATTTGGGGA 60.091 50.000 0.00 0.00 0.00 4.81
1990 2050 3.225940 GAAGGGCTGAATATTTGGGGAG 58.774 50.000 0.00 0.00 0.00 4.30
1991 2051 2.502745 AGGGCTGAATATTTGGGGAGA 58.497 47.619 0.00 0.00 0.00 3.71
1992 2052 2.858768 AGGGCTGAATATTTGGGGAGAA 59.141 45.455 0.00 0.00 0.00 2.87
1993 2053 3.117360 AGGGCTGAATATTTGGGGAGAAG 60.117 47.826 0.00 0.00 0.00 2.85
1994 2054 3.225940 GGCTGAATATTTGGGGAGAAGG 58.774 50.000 0.00 0.00 0.00 3.46
1995 2055 2.625314 GCTGAATATTTGGGGAGAAGGC 59.375 50.000 0.00 0.00 0.00 4.35
1996 2056 2.880890 CTGAATATTTGGGGAGAAGGCG 59.119 50.000 0.00 0.00 0.00 5.52
1997 2057 2.230660 GAATATTTGGGGAGAAGGCGG 58.769 52.381 0.00 0.00 0.00 6.13
1998 2058 1.518367 ATATTTGGGGAGAAGGCGGA 58.482 50.000 0.00 0.00 0.00 5.54
1999 2059 0.544697 TATTTGGGGAGAAGGCGGAC 59.455 55.000 0.00 0.00 0.00 4.79
2000 2060 1.208165 ATTTGGGGAGAAGGCGGACT 61.208 55.000 0.00 0.00 0.00 3.85
2001 2061 0.545787 TTTGGGGAGAAGGCGGACTA 60.546 55.000 0.00 0.00 0.00 2.59
2002 2062 0.326238 TTGGGGAGAAGGCGGACTAT 60.326 55.000 0.00 0.00 0.00 2.12
2003 2063 0.326238 TGGGGAGAAGGCGGACTATT 60.326 55.000 0.00 0.00 0.00 1.73
2004 2064 0.837940 GGGGAGAAGGCGGACTATTT 59.162 55.000 0.00 0.00 0.00 1.40
2005 2065 1.212195 GGGGAGAAGGCGGACTATTTT 59.788 52.381 0.00 0.00 0.00 1.82
2006 2066 2.436911 GGGGAGAAGGCGGACTATTTTA 59.563 50.000 0.00 0.00 0.00 1.52
2007 2067 3.494573 GGGGAGAAGGCGGACTATTTTAG 60.495 52.174 0.00 0.00 0.00 1.85
2008 2068 3.132160 GGAGAAGGCGGACTATTTTAGC 58.868 50.000 0.00 0.00 0.00 3.09
2009 2069 3.431766 GGAGAAGGCGGACTATTTTAGCA 60.432 47.826 0.00 0.00 0.00 3.49
2010 2070 4.381411 GAGAAGGCGGACTATTTTAGCAT 58.619 43.478 0.00 0.00 0.00 3.79
2011 2071 4.381411 AGAAGGCGGACTATTTTAGCATC 58.619 43.478 0.00 0.00 0.00 3.91
2012 2072 4.101741 AGAAGGCGGACTATTTTAGCATCT 59.898 41.667 0.00 0.00 0.00 2.90
2013 2073 3.733337 AGGCGGACTATTTTAGCATCTG 58.267 45.455 0.00 0.00 0.00 2.90
2014 2074 3.134804 AGGCGGACTATTTTAGCATCTGT 59.865 43.478 0.00 0.00 0.00 3.41
2015 2075 3.877508 GGCGGACTATTTTAGCATCTGTT 59.122 43.478 0.00 0.00 0.00 3.16
2016 2076 4.260784 GGCGGACTATTTTAGCATCTGTTG 60.261 45.833 0.00 0.00 0.00 3.33
2017 2077 4.570772 GCGGACTATTTTAGCATCTGTTGA 59.429 41.667 0.00 0.00 0.00 3.18
2018 2078 5.064707 GCGGACTATTTTAGCATCTGTTGAA 59.935 40.000 0.00 0.00 0.00 2.69
2019 2079 6.238484 GCGGACTATTTTAGCATCTGTTGAAT 60.238 38.462 0.00 0.00 0.00 2.57
2020 2080 7.128331 CGGACTATTTTAGCATCTGTTGAATG 58.872 38.462 0.00 0.00 0.00 2.67
2021 2081 7.201644 CGGACTATTTTAGCATCTGTTGAATGT 60.202 37.037 0.00 0.00 0.00 2.71
2022 2082 7.912250 GGACTATTTTAGCATCTGTTGAATGTG 59.088 37.037 0.00 0.00 0.00 3.21
2023 2083 8.340618 ACTATTTTAGCATCTGTTGAATGTGT 57.659 30.769 0.00 0.00 0.00 3.72
2024 2084 8.239314 ACTATTTTAGCATCTGTTGAATGTGTG 58.761 33.333 0.00 0.00 0.00 3.82
2025 2085 6.631971 TTTTAGCATCTGTTGAATGTGTGA 57.368 33.333 0.00 0.00 0.00 3.58
2026 2086 5.611796 TTAGCATCTGTTGAATGTGTGAC 57.388 39.130 0.00 0.00 0.00 3.67
2027 2087 3.748083 AGCATCTGTTGAATGTGTGACT 58.252 40.909 0.00 0.00 0.00 3.41
2028 2088 4.139786 AGCATCTGTTGAATGTGTGACTT 58.860 39.130 0.00 0.00 0.00 3.01
2029 2089 5.308014 AGCATCTGTTGAATGTGTGACTTA 58.692 37.500 0.00 0.00 0.00 2.24
2030 2090 5.764686 AGCATCTGTTGAATGTGTGACTTAA 59.235 36.000 0.00 0.00 0.00 1.85
2031 2091 5.853282 GCATCTGTTGAATGTGTGACTTAAC 59.147 40.000 0.00 0.00 0.00 2.01
2032 2092 6.513230 GCATCTGTTGAATGTGTGACTTAACA 60.513 38.462 0.00 0.00 0.00 2.41
2033 2093 6.603237 TCTGTTGAATGTGTGACTTAACAG 57.397 37.500 0.00 0.00 42.77 3.16
2034 2094 5.527214 TCTGTTGAATGTGTGACTTAACAGG 59.473 40.000 12.52 0.00 42.10 4.00
2035 2095 5.432645 TGTTGAATGTGTGACTTAACAGGA 58.567 37.500 0.00 0.00 0.00 3.86
2036 2096 5.295787 TGTTGAATGTGTGACTTAACAGGAC 59.704 40.000 0.00 0.00 0.00 3.85
2037 2097 5.029807 TGAATGTGTGACTTAACAGGACA 57.970 39.130 0.00 0.00 0.00 4.02
2038 2098 5.620206 TGAATGTGTGACTTAACAGGACAT 58.380 37.500 0.00 0.00 0.00 3.06
2039 2099 5.700832 TGAATGTGTGACTTAACAGGACATC 59.299 40.000 0.00 0.00 0.00 3.06
2040 2100 3.649073 TGTGTGACTTAACAGGACATCG 58.351 45.455 0.00 0.00 0.00 3.84
2041 2101 3.319689 TGTGTGACTTAACAGGACATCGA 59.680 43.478 0.00 0.00 0.00 3.59
2042 2102 4.021456 TGTGTGACTTAACAGGACATCGAT 60.021 41.667 0.00 0.00 0.00 3.59
2043 2103 4.929808 GTGTGACTTAACAGGACATCGATT 59.070 41.667 0.00 0.00 0.00 3.34
2044 2104 5.408604 GTGTGACTTAACAGGACATCGATTT 59.591 40.000 0.00 0.00 0.00 2.17
2045 2105 5.995282 TGTGACTTAACAGGACATCGATTTT 59.005 36.000 0.00 0.00 0.00 1.82
2046 2106 7.117236 GTGTGACTTAACAGGACATCGATTTTA 59.883 37.037 0.00 0.00 0.00 1.52
2047 2107 7.330946 TGTGACTTAACAGGACATCGATTTTAG 59.669 37.037 0.00 0.00 0.00 1.85
2048 2108 7.331193 GTGACTTAACAGGACATCGATTTTAGT 59.669 37.037 0.00 0.00 0.00 2.24
2049 2109 7.330946 TGACTTAACAGGACATCGATTTTAGTG 59.669 37.037 0.00 0.00 0.00 2.74
2050 2110 7.383687 ACTTAACAGGACATCGATTTTAGTGA 58.616 34.615 0.00 0.00 0.00 3.41
2051 2111 7.876068 ACTTAACAGGACATCGATTTTAGTGAA 59.124 33.333 0.00 0.00 0.00 3.18
2052 2112 8.786826 TTAACAGGACATCGATTTTAGTGAAT 57.213 30.769 0.00 0.00 0.00 2.57
2053 2113 6.668541 ACAGGACATCGATTTTAGTGAATG 57.331 37.500 0.00 0.00 0.00 2.67
2054 2114 6.406370 ACAGGACATCGATTTTAGTGAATGA 58.594 36.000 0.00 0.00 0.00 2.57
2055 2115 6.878923 ACAGGACATCGATTTTAGTGAATGAA 59.121 34.615 0.00 0.00 0.00 2.57
2056 2116 7.065085 ACAGGACATCGATTTTAGTGAATGAAG 59.935 37.037 0.00 0.00 0.00 3.02
2057 2117 7.278646 CAGGACATCGATTTTAGTGAATGAAGA 59.721 37.037 0.00 0.00 0.00 2.87
2058 2118 7.989741 AGGACATCGATTTTAGTGAATGAAGAT 59.010 33.333 0.00 0.00 0.00 2.40
2059 2119 8.616076 GGACATCGATTTTAGTGAATGAAGATT 58.384 33.333 0.00 0.00 0.00 2.40
2081 2141 9.753674 AGATTATTTTTACCAGAAACTCATGGA 57.246 29.630 0.00 0.00 39.02 3.41
2084 2144 6.588719 TTTTTACCAGAAACTCATGGATGG 57.411 37.500 0.00 0.00 39.02 3.51
2085 2145 5.512942 TTTACCAGAAACTCATGGATGGA 57.487 39.130 0.00 0.00 39.02 3.41
2086 2146 5.715439 TTACCAGAAACTCATGGATGGAT 57.285 39.130 0.00 0.00 39.02 3.41
2087 2147 3.894759 ACCAGAAACTCATGGATGGATG 58.105 45.455 0.00 0.00 39.02 3.51
2088 2148 3.267812 ACCAGAAACTCATGGATGGATGT 59.732 43.478 0.00 0.00 39.02 3.06
2089 2149 3.630769 CCAGAAACTCATGGATGGATGTG 59.369 47.826 0.00 0.00 39.02 3.21
2090 2150 4.267536 CAGAAACTCATGGATGGATGTGT 58.732 43.478 0.00 0.00 32.70 3.72
2091 2151 4.703575 CAGAAACTCATGGATGGATGTGTT 59.296 41.667 0.00 0.00 40.20 3.32
2092 2152 5.184479 CAGAAACTCATGGATGGATGTGTTT 59.816 40.000 11.46 11.46 45.70 2.83
2093 2153 5.776716 AGAAACTCATGGATGGATGTGTTTT 59.223 36.000 12.42 4.07 44.27 2.43
2094 2154 6.947733 AGAAACTCATGGATGGATGTGTTTTA 59.052 34.615 12.42 0.00 44.27 1.52
2095 2155 7.616935 AGAAACTCATGGATGGATGTGTTTTAT 59.383 33.333 12.42 5.30 44.27 1.40
2096 2156 7.722949 AACTCATGGATGGATGTGTTTTATT 57.277 32.000 0.00 0.00 36.93 1.40
2097 2157 7.722949 ACTCATGGATGGATGTGTTTTATTT 57.277 32.000 0.00 0.00 28.00 1.40
2098 2158 8.137745 ACTCATGGATGGATGTGTTTTATTTT 57.862 30.769 0.00 0.00 28.00 1.82
2099 2159 8.596293 ACTCATGGATGGATGTGTTTTATTTTT 58.404 29.630 0.00 0.00 28.00 1.94
2100 2160 9.090692 CTCATGGATGGATGTGTTTTATTTTTC 57.909 33.333 0.00 0.00 0.00 2.29
2101 2161 7.758980 TCATGGATGGATGTGTTTTATTTTTCG 59.241 33.333 0.00 0.00 0.00 3.46
2102 2162 7.220741 TGGATGGATGTGTTTTATTTTTCGA 57.779 32.000 0.00 0.00 0.00 3.71
2103 2163 7.661968 TGGATGGATGTGTTTTATTTTTCGAA 58.338 30.769 0.00 0.00 0.00 3.71
2104 2164 7.596995 TGGATGGATGTGTTTTATTTTTCGAAC 59.403 33.333 0.00 0.00 0.00 3.95
2105 2165 7.812669 GGATGGATGTGTTTTATTTTTCGAACT 59.187 33.333 0.00 0.00 0.00 3.01
2106 2166 7.922505 TGGATGTGTTTTATTTTTCGAACTG 57.077 32.000 0.00 0.00 0.00 3.16
2107 2167 7.484975 TGGATGTGTTTTATTTTTCGAACTGT 58.515 30.769 0.00 0.00 0.00 3.55
2108 2168 7.976734 TGGATGTGTTTTATTTTTCGAACTGTT 59.023 29.630 0.00 0.00 0.00 3.16
2109 2169 9.453325 GGATGTGTTTTATTTTTCGAACTGTTA 57.547 29.630 0.00 0.00 0.00 2.41
2120 2180 6.721571 TTTCGAACTGTTATCTGTCAATCC 57.278 37.500 0.00 0.00 0.00 3.01
2121 2181 5.661056 TCGAACTGTTATCTGTCAATCCT 57.339 39.130 0.00 0.00 0.00 3.24
2122 2182 6.037786 TCGAACTGTTATCTGTCAATCCTT 57.962 37.500 0.00 0.00 0.00 3.36
2123 2183 5.869344 TCGAACTGTTATCTGTCAATCCTTG 59.131 40.000 0.00 0.00 0.00 3.61
2124 2184 5.446473 CGAACTGTTATCTGTCAATCCTTGC 60.446 44.000 0.00 0.00 0.00 4.01
2125 2185 4.910195 ACTGTTATCTGTCAATCCTTGCA 58.090 39.130 0.00 0.00 0.00 4.08
2126 2186 5.316167 ACTGTTATCTGTCAATCCTTGCAA 58.684 37.500 0.00 0.00 0.00 4.08
2127 2187 5.182001 ACTGTTATCTGTCAATCCTTGCAAC 59.818 40.000 0.00 0.00 0.00 4.17
2128 2188 5.316167 TGTTATCTGTCAATCCTTGCAACT 58.684 37.500 0.00 0.00 0.00 3.16
2129 2189 5.181811 TGTTATCTGTCAATCCTTGCAACTG 59.818 40.000 0.00 0.00 0.00 3.16
2130 2190 2.507484 TCTGTCAATCCTTGCAACTGG 58.493 47.619 0.00 0.00 0.00 4.00
2131 2191 2.158623 TCTGTCAATCCTTGCAACTGGT 60.159 45.455 0.00 0.00 0.00 4.00
2132 2192 3.072330 TCTGTCAATCCTTGCAACTGGTA 59.928 43.478 0.00 0.00 0.00 3.25
2133 2193 4.012374 CTGTCAATCCTTGCAACTGGTAT 58.988 43.478 0.00 0.00 0.00 2.73
2134 2194 4.406456 TGTCAATCCTTGCAACTGGTATT 58.594 39.130 0.00 0.00 0.00 1.89
2135 2195 4.218200 TGTCAATCCTTGCAACTGGTATTG 59.782 41.667 15.81 15.81 0.00 1.90
2136 2196 4.218417 GTCAATCCTTGCAACTGGTATTGT 59.782 41.667 18.48 0.00 31.83 2.71
2137 2197 4.832266 TCAATCCTTGCAACTGGTATTGTT 59.168 37.500 18.48 0.00 31.83 2.83
2138 2198 4.789012 ATCCTTGCAACTGGTATTGTTG 57.211 40.909 0.00 0.00 45.23 3.33
2139 2199 2.890311 TCCTTGCAACTGGTATTGTTGG 59.110 45.455 0.00 0.00 43.37 3.77
2140 2200 2.610232 CCTTGCAACTGGTATTGTTGGC 60.610 50.000 0.00 2.65 43.37 4.52
2141 2201 1.993956 TGCAACTGGTATTGTTGGCT 58.006 45.000 8.39 0.00 43.37 4.75
2142 2202 3.147553 TGCAACTGGTATTGTTGGCTA 57.852 42.857 8.39 0.00 43.37 3.93
2143 2203 2.817258 TGCAACTGGTATTGTTGGCTAC 59.183 45.455 8.39 0.00 43.37 3.58
2144 2204 2.159572 GCAACTGGTATTGTTGGCTACG 60.160 50.000 8.39 0.00 43.37 3.51
2145 2205 1.734163 ACTGGTATTGTTGGCTACGC 58.266 50.000 0.00 0.00 0.00 4.42
2146 2206 1.002659 ACTGGTATTGTTGGCTACGCA 59.997 47.619 0.00 0.00 0.00 5.24
2147 2207 2.288666 CTGGTATTGTTGGCTACGCAT 58.711 47.619 0.00 0.00 0.00 4.73
2148 2208 2.013400 TGGTATTGTTGGCTACGCATG 58.987 47.619 0.00 0.00 0.00 4.06
2149 2209 1.268539 GGTATTGTTGGCTACGCATGC 60.269 52.381 7.91 7.91 0.00 4.06
2150 2210 1.670811 GTATTGTTGGCTACGCATGCT 59.329 47.619 17.13 5.50 0.00 3.79
2151 2211 0.452987 ATTGTTGGCTACGCATGCTG 59.547 50.000 17.13 11.87 0.00 4.41
2152 2212 1.585267 TTGTTGGCTACGCATGCTGG 61.585 55.000 17.13 3.27 0.00 4.85
2153 2213 1.745115 GTTGGCTACGCATGCTGGA 60.745 57.895 17.13 5.17 0.00 3.86
2154 2214 1.450134 TTGGCTACGCATGCTGGAG 60.450 57.895 17.13 15.83 0.00 3.86
2155 2215 3.275338 GGCTACGCATGCTGGAGC 61.275 66.667 27.91 27.91 42.50 4.70
2156 2216 3.275338 GCTACGCATGCTGGAGCC 61.275 66.667 26.47 14.30 41.18 4.70
2157 2217 2.963854 CTACGCATGCTGGAGCCG 60.964 66.667 17.13 0.00 41.18 5.52
2158 2218 3.723235 CTACGCATGCTGGAGCCGT 62.723 63.158 17.13 6.75 41.18 5.68
2159 2219 2.349969 CTACGCATGCTGGAGCCGTA 62.350 60.000 17.13 7.59 41.18 4.02
2160 2220 1.744320 TACGCATGCTGGAGCCGTAT 61.744 55.000 17.13 0.00 41.18 3.06
2161 2221 1.889105 CGCATGCTGGAGCCGTATT 60.889 57.895 17.13 0.00 41.18 1.89
2162 2222 1.439353 CGCATGCTGGAGCCGTATTT 61.439 55.000 17.13 0.00 41.18 1.40
2163 2223 0.740737 GCATGCTGGAGCCGTATTTT 59.259 50.000 11.37 0.00 41.18 1.82
2164 2224 1.534595 GCATGCTGGAGCCGTATTTTG 60.535 52.381 11.37 0.00 41.18 2.44
2165 2225 2.016318 CATGCTGGAGCCGTATTTTGA 58.984 47.619 0.00 0.00 41.18 2.69
2166 2226 2.418368 TGCTGGAGCCGTATTTTGAT 57.582 45.000 0.00 0.00 41.18 2.57
2167 2227 3.552132 TGCTGGAGCCGTATTTTGATA 57.448 42.857 0.00 0.00 41.18 2.15
2168 2228 4.085357 TGCTGGAGCCGTATTTTGATAT 57.915 40.909 0.00 0.00 41.18 1.63
2169 2229 4.460263 TGCTGGAGCCGTATTTTGATATT 58.540 39.130 0.00 0.00 41.18 1.28
2170 2230 4.887071 TGCTGGAGCCGTATTTTGATATTT 59.113 37.500 0.00 0.00 41.18 1.40
2171 2231 5.008613 TGCTGGAGCCGTATTTTGATATTTC 59.991 40.000 0.00 0.00 41.18 2.17
2172 2232 5.008613 GCTGGAGCCGTATTTTGATATTTCA 59.991 40.000 0.00 0.00 34.31 2.69
2173 2233 6.371809 TGGAGCCGTATTTTGATATTTCAC 57.628 37.500 0.00 0.00 0.00 3.18
2174 2234 6.119536 TGGAGCCGTATTTTGATATTTCACT 58.880 36.000 0.00 0.00 0.00 3.41
2175 2235 6.601613 TGGAGCCGTATTTTGATATTTCACTT 59.398 34.615 0.00 0.00 0.00 3.16
2176 2236 6.912591 GGAGCCGTATTTTGATATTTCACTTG 59.087 38.462 0.00 0.00 0.00 3.16
2177 2237 7.201696 GGAGCCGTATTTTGATATTTCACTTGA 60.202 37.037 0.00 0.00 0.00 3.02
2178 2238 8.050778 AGCCGTATTTTGATATTTCACTTGAA 57.949 30.769 0.00 0.00 0.00 2.69
2179 2239 8.184192 AGCCGTATTTTGATATTTCACTTGAAG 58.816 33.333 0.00 0.00 35.21 3.02
2180 2240 7.432252 GCCGTATTTTGATATTTCACTTGAAGG 59.568 37.037 0.00 0.00 35.21 3.46
2181 2241 8.458843 CCGTATTTTGATATTTCACTTGAAGGT 58.541 33.333 0.00 0.00 35.21 3.50
2198 2258 9.503399 ACTTGAAGGTACTAAAAGTAATCTTGG 57.497 33.333 0.00 3.58 40.80 3.61
2199 2259 9.720769 CTTGAAGGTACTAAAAGTAATCTTGGA 57.279 33.333 0.00 0.00 38.49 3.53
2201 2261 9.498176 TGAAGGTACTAAAAGTAATCTTGGAAC 57.502 33.333 0.00 0.00 38.49 3.62
2202 2262 9.498176 GAAGGTACTAAAAGTAATCTTGGAACA 57.502 33.333 0.00 0.00 38.49 3.18
2203 2263 9.503399 AAGGTACTAAAAGTAATCTTGGAACAG 57.497 33.333 0.00 0.00 37.41 3.16
2204 2264 7.606839 AGGTACTAAAAGTAATCTTGGAACAGC 59.393 37.037 0.00 0.00 36.43 4.40
2205 2265 7.389607 GGTACTAAAAGTAATCTTGGAACAGCA 59.610 37.037 0.00 0.00 33.41 4.41
2206 2266 7.440523 ACTAAAAGTAATCTTGGAACAGCAG 57.559 36.000 0.00 0.00 42.39 4.24
2207 2267 5.712152 AAAAGTAATCTTGGAACAGCAGG 57.288 39.130 0.00 0.00 42.39 4.85
2208 2268 4.640771 AAGTAATCTTGGAACAGCAGGA 57.359 40.909 0.00 0.00 42.39 3.86
2209 2269 4.640771 AGTAATCTTGGAACAGCAGGAA 57.359 40.909 0.00 0.00 42.39 3.36
2210 2270 4.985538 AGTAATCTTGGAACAGCAGGAAA 58.014 39.130 0.00 0.00 42.39 3.13
2211 2271 5.385198 AGTAATCTTGGAACAGCAGGAAAA 58.615 37.500 0.00 0.00 42.39 2.29
2212 2272 5.833131 AGTAATCTTGGAACAGCAGGAAAAA 59.167 36.000 0.00 0.00 42.39 1.94
2249 2309 9.928236 AACAACATTTTTATTACACATTTGCAC 57.072 25.926 0.00 0.00 0.00 4.57
2250 2310 9.323985 ACAACATTTTTATTACACATTTGCACT 57.676 25.926 0.00 0.00 0.00 4.40
2251 2311 9.583530 CAACATTTTTATTACACATTTGCACTG 57.416 29.630 0.00 0.00 0.00 3.66
2252 2312 8.309163 ACATTTTTATTACACATTTGCACTGG 57.691 30.769 0.00 0.00 0.00 4.00
2253 2313 7.387397 ACATTTTTATTACACATTTGCACTGGG 59.613 33.333 0.00 0.00 0.00 4.45
2254 2314 6.656632 TTTTATTACACATTTGCACTGGGA 57.343 33.333 4.76 0.00 0.00 4.37
2255 2315 6.656632 TTTATTACACATTTGCACTGGGAA 57.343 33.333 4.76 0.00 0.00 3.97
2256 2316 4.789012 ATTACACATTTGCACTGGGAAG 57.211 40.909 4.76 0.00 0.00 3.46
2257 2317 2.363306 ACACATTTGCACTGGGAAGA 57.637 45.000 4.76 0.00 0.00 2.87
2258 2318 2.880443 ACACATTTGCACTGGGAAGAT 58.120 42.857 4.76 0.00 0.00 2.40
2259 2319 3.233507 ACACATTTGCACTGGGAAGATT 58.766 40.909 4.76 0.00 0.00 2.40
2260 2320 4.406456 ACACATTTGCACTGGGAAGATTA 58.594 39.130 4.76 0.00 0.00 1.75
2261 2321 4.832266 ACACATTTGCACTGGGAAGATTAA 59.168 37.500 4.76 0.00 0.00 1.40
2262 2322 5.047802 ACACATTTGCACTGGGAAGATTAAG 60.048 40.000 4.76 0.00 0.00 1.85
2263 2323 5.183713 CACATTTGCACTGGGAAGATTAAGA 59.816 40.000 0.00 0.00 0.00 2.10
2264 2324 5.774690 ACATTTGCACTGGGAAGATTAAGAA 59.225 36.000 0.00 0.00 0.00 2.52
2265 2325 6.438425 ACATTTGCACTGGGAAGATTAAGAAT 59.562 34.615 0.00 0.00 0.00 2.40
2266 2326 7.615365 ACATTTGCACTGGGAAGATTAAGAATA 59.385 33.333 0.00 0.00 0.00 1.75
2267 2327 7.391148 TTTGCACTGGGAAGATTAAGAATAC 57.609 36.000 0.00 0.00 0.00 1.89
2268 2328 6.061022 TGCACTGGGAAGATTAAGAATACA 57.939 37.500 0.00 0.00 0.00 2.29
2269 2329 5.880332 TGCACTGGGAAGATTAAGAATACAC 59.120 40.000 0.00 0.00 0.00 2.90
2270 2330 5.880332 GCACTGGGAAGATTAAGAATACACA 59.120 40.000 0.00 0.00 0.00 3.72
2271 2331 6.374333 GCACTGGGAAGATTAAGAATACACAA 59.626 38.462 0.00 0.00 0.00 3.33
2272 2332 7.067494 GCACTGGGAAGATTAAGAATACACAAT 59.933 37.037 0.00 0.00 0.00 2.71
2273 2333 9.613428 CACTGGGAAGATTAAGAATACACAATA 57.387 33.333 0.00 0.00 0.00 1.90
2299 2359 9.546428 AAGAAAGCAAATTATTTTAGCTGTGTT 57.454 25.926 0.00 1.35 32.91 3.32
2300 2360 9.546428 AGAAAGCAAATTATTTTAGCTGTGTTT 57.454 25.926 0.00 0.00 32.91 2.83
2301 2361 9.584839 GAAAGCAAATTATTTTAGCTGTGTTTG 57.415 29.630 0.00 0.00 32.91 2.93
2302 2362 7.656707 AGCAAATTATTTTAGCTGTGTTTGG 57.343 32.000 0.00 0.00 32.02 3.28
2303 2363 7.441017 AGCAAATTATTTTAGCTGTGTTTGGA 58.559 30.769 0.00 0.00 32.02 3.53
2304 2364 7.384932 AGCAAATTATTTTAGCTGTGTTTGGAC 59.615 33.333 0.00 0.00 32.02 4.02
2305 2365 7.170658 GCAAATTATTTTAGCTGTGTTTGGACA 59.829 33.333 0.00 0.00 0.00 4.02
2317 2377 4.898829 TGTTTGGACACTGTTGAGATTG 57.101 40.909 0.00 0.00 0.00 2.67
2318 2378 4.269183 TGTTTGGACACTGTTGAGATTGT 58.731 39.130 0.00 0.00 0.00 2.71
2319 2379 5.432645 TGTTTGGACACTGTTGAGATTGTA 58.567 37.500 0.00 0.00 0.00 2.41
2320 2380 5.883115 TGTTTGGACACTGTTGAGATTGTAA 59.117 36.000 0.00 0.00 0.00 2.41
2321 2381 6.375736 TGTTTGGACACTGTTGAGATTGTAAA 59.624 34.615 0.00 0.00 0.00 2.01
2322 2382 7.094162 TGTTTGGACACTGTTGAGATTGTAAAA 60.094 33.333 0.00 0.00 0.00 1.52
2323 2383 7.397892 TTGGACACTGTTGAGATTGTAAAAA 57.602 32.000 0.00 0.00 0.00 1.94
2324 2384 7.026631 TGGACACTGTTGAGATTGTAAAAAG 57.973 36.000 0.00 0.00 0.00 2.27
2325 2385 6.601613 TGGACACTGTTGAGATTGTAAAAAGT 59.398 34.615 0.00 0.00 0.00 2.66
2326 2386 6.912591 GGACACTGTTGAGATTGTAAAAAGTG 59.087 38.462 0.54 0.54 38.70 3.16
2327 2387 7.201696 GGACACTGTTGAGATTGTAAAAAGTGA 60.202 37.037 7.98 0.00 36.78 3.41
2328 2388 8.050778 ACACTGTTGAGATTGTAAAAAGTGAA 57.949 30.769 7.98 0.00 36.78 3.18
2329 2389 8.519526 ACACTGTTGAGATTGTAAAAAGTGAAA 58.480 29.630 7.98 0.00 36.78 2.69
2330 2390 9.520204 CACTGTTGAGATTGTAAAAAGTGAAAT 57.480 29.630 0.00 0.00 35.63 2.17
2331 2391 9.520204 ACTGTTGAGATTGTAAAAAGTGAAATG 57.480 29.630 0.00 0.00 0.00 2.32
2332 2392 8.870160 TGTTGAGATTGTAAAAAGTGAAATGG 57.130 30.769 0.00 0.00 0.00 3.16
2333 2393 7.437862 TGTTGAGATTGTAAAAAGTGAAATGGC 59.562 33.333 0.00 0.00 0.00 4.40
2334 2394 7.288810 TGAGATTGTAAAAAGTGAAATGGCT 57.711 32.000 0.00 0.00 0.00 4.75
2335 2395 7.147312 TGAGATTGTAAAAAGTGAAATGGCTG 58.853 34.615 0.00 0.00 0.00 4.85
2336 2396 7.014134 TGAGATTGTAAAAAGTGAAATGGCTGA 59.986 33.333 0.00 0.00 0.00 4.26
2337 2397 7.725251 AGATTGTAAAAAGTGAAATGGCTGAA 58.275 30.769 0.00 0.00 0.00 3.02
2338 2398 8.370182 AGATTGTAAAAAGTGAAATGGCTGAAT 58.630 29.630 0.00 0.00 0.00 2.57
2339 2399 9.638239 GATTGTAAAAAGTGAAATGGCTGAATA 57.362 29.630 0.00 0.00 0.00 1.75
2341 2401 9.995003 TTGTAAAAAGTGAAATGGCTGAATATT 57.005 25.926 0.00 0.00 0.00 1.28
2342 2402 9.995003 TGTAAAAAGTGAAATGGCTGAATATTT 57.005 25.926 0.00 0.00 0.00 1.40
2352 2412 5.698741 TGGCTGAATATTTGAGGAGAAGA 57.301 39.130 0.00 0.00 0.00 2.87
2445 2506 1.001974 CAGAAACTCATGGACGGTGGA 59.998 52.381 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 3.622163 CAGAAGCTGGATGATCTGTTGTC 59.378 47.826 3.15 0.00 35.65 3.18
99 100 3.607741 CAGAAGCTGGATGATCTGTTGT 58.392 45.455 3.15 0.00 35.65 3.32
164 165 5.182190 TCAGCAGTACAAGTGAACAACAAAA 59.818 36.000 0.00 0.00 0.00 2.44
182 184 4.346734 AAATAGCGTGTTGAATCAGCAG 57.653 40.909 0.00 0.00 0.00 4.24
216 218 6.332630 GGTGCACATTTGTATTCTAGCAATT 58.667 36.000 20.43 0.00 32.03 2.32
217 219 5.449041 CGGTGCACATTTGTATTCTAGCAAT 60.449 40.000 20.43 0.00 32.03 3.56
218 220 4.142708 CGGTGCACATTTGTATTCTAGCAA 60.143 41.667 20.43 0.00 32.03 3.91
220 222 3.374058 ACGGTGCACATTTGTATTCTAGC 59.626 43.478 20.43 0.00 0.00 3.42
221 223 4.870426 AGACGGTGCACATTTGTATTCTAG 59.130 41.667 20.43 0.00 0.00 2.43
224 232 4.419522 AAGACGGTGCACATTTGTATTC 57.580 40.909 20.43 2.46 0.00 1.75
239 247 0.818296 CTCCACCTCCACTAAGACGG 59.182 60.000 0.00 0.00 0.00 4.79
243 251 3.636679 TGAGATCTCCACCTCCACTAAG 58.363 50.000 20.03 0.00 0.00 2.18
244 252 3.757947 TGAGATCTCCACCTCCACTAA 57.242 47.619 20.03 0.00 0.00 2.24
315 356 1.682849 GATACACAGTGGCCACCCA 59.317 57.895 32.29 13.23 39.32 4.51
349 390 3.516981 TGCTTCTTCTCATCTCTTCCG 57.483 47.619 0.00 0.00 0.00 4.30
353 394 3.586618 AGGGTTTGCTTCTTCTCATCTCT 59.413 43.478 0.00 0.00 0.00 3.10
359 400 4.520492 TCATTTCAGGGTTTGCTTCTTCTC 59.480 41.667 0.00 0.00 0.00 2.87
362 403 5.565439 CGATTCATTTCAGGGTTTGCTTCTT 60.565 40.000 0.00 0.00 0.00 2.52
610 651 2.567049 CTCTCGAGCCGTTTCCGT 59.433 61.111 7.81 0.00 0.00 4.69
768 809 0.178975 ACACAGCCGGAAAAATCCCA 60.179 50.000 5.05 0.00 0.00 4.37
849 890 1.801771 CAAAGATTCGCCCGTTACACA 59.198 47.619 0.00 0.00 0.00 3.72
850 891 1.802365 ACAAAGATTCGCCCGTTACAC 59.198 47.619 0.00 0.00 0.00 2.90
851 892 2.172851 ACAAAGATTCGCCCGTTACA 57.827 45.000 0.00 0.00 0.00 2.41
898 939 6.295575 CCTGTTACATTTTGATTGGGCCTTTA 60.296 38.462 4.53 0.00 0.00 1.85
928 976 2.097036 GGCCCAATTGGTGTTAGTACC 58.903 52.381 22.91 7.36 41.24 3.34
941 989 2.375146 GGACGTCAAATAAGGCCCAAT 58.625 47.619 18.91 0.00 0.00 3.16
1305 1359 2.920912 TCCACCACCACGTCCTCC 60.921 66.667 0.00 0.00 0.00 4.30
1386 1440 2.925706 TTGTAGCACCCCCTCGCA 60.926 61.111 0.00 0.00 0.00 5.10
1407 1461 2.688446 CTCCGGAGTGCAGTTCAGTATA 59.312 50.000 24.04 0.00 0.00 1.47
1422 1476 4.332543 AACCCCCTCAGCTCCGGA 62.333 66.667 2.93 2.93 0.00 5.14
1459 1513 2.169352 CCATCTGGACGTTCTTCTCCAT 59.831 50.000 0.00 0.00 35.95 3.41
1505 1559 1.272212 GAGAGATCCATCCGAGAAGGC 59.728 57.143 0.00 0.00 40.77 4.35
1525 1579 3.012518 CAGCTAGAAAACATCACCAGGG 58.987 50.000 0.00 0.00 0.00 4.45
1559 1613 9.706691 AATTATTCCGTCACGTTTCATAGATAT 57.293 29.630 0.00 0.00 0.00 1.63
1571 1625 1.062002 AGCGCAAATTATTCCGTCACG 59.938 47.619 11.47 0.00 0.00 4.35
1576 1630 5.040635 ACCATAAAAGCGCAAATTATTCCG 58.959 37.500 11.47 4.00 0.00 4.30
1588 1642 3.829886 TGAGAGCAAACCATAAAAGCG 57.170 42.857 0.00 0.00 0.00 4.68
1684 1741 7.549147 TTTTGACCTGGTAGTAGTTATCAGT 57.451 36.000 0.00 0.00 38.60 3.41
1685 1742 8.041323 ACATTTTGACCTGGTAGTAGTTATCAG 58.959 37.037 0.00 0.00 39.75 2.90
1686 1743 7.913789 ACATTTTGACCTGGTAGTAGTTATCA 58.086 34.615 0.00 0.00 0.00 2.15
1687 1744 8.788325 AACATTTTGACCTGGTAGTAGTTATC 57.212 34.615 0.00 0.00 0.00 1.75
1689 1746 7.163441 GGAACATTTTGACCTGGTAGTAGTTA 58.837 38.462 0.00 0.00 0.00 2.24
1690 1747 6.002082 GGAACATTTTGACCTGGTAGTAGTT 58.998 40.000 0.00 0.38 0.00 2.24
1691 1748 5.557866 GGAACATTTTGACCTGGTAGTAGT 58.442 41.667 0.00 0.00 0.00 2.73
1692 1749 4.630069 CGGAACATTTTGACCTGGTAGTAG 59.370 45.833 0.00 0.00 0.00 2.57
1693 1750 4.571919 CGGAACATTTTGACCTGGTAGTA 58.428 43.478 0.00 0.00 0.00 1.82
1698 1755 0.958091 TGCGGAACATTTTGACCTGG 59.042 50.000 0.00 0.00 0.00 4.45
1724 1784 6.246420 ACAAGCTGTGTTCATCAGAATAAC 57.754 37.500 0.00 0.00 37.01 1.89
1738 1798 5.820131 TCAATACAACTTCAACAAGCTGTG 58.180 37.500 0.00 0.00 38.98 3.66
1768 1828 5.221722 GCCTGAGACTGGATATTTGGATGTA 60.222 44.000 0.00 0.00 0.00 2.29
1816 1876 7.985752 CCGAGGTTCCAAGATTACTTTTAGTAT 59.014 37.037 0.00 0.00 33.70 2.12
1971 2031 2.502745 TCTCCCCAAATATTCAGCCCT 58.497 47.619 0.00 0.00 0.00 5.19
1985 2045 0.837940 AAATAGTCCGCCTTCTCCCC 59.162 55.000 0.00 0.00 0.00 4.81
1986 2046 2.711978 AAAATAGTCCGCCTTCTCCC 57.288 50.000 0.00 0.00 0.00 4.30
1987 2047 3.132160 GCTAAAATAGTCCGCCTTCTCC 58.868 50.000 0.00 0.00 0.00 3.71
1988 2048 3.793559 TGCTAAAATAGTCCGCCTTCTC 58.206 45.455 0.00 0.00 0.00 2.87
1989 2049 3.906720 TGCTAAAATAGTCCGCCTTCT 57.093 42.857 0.00 0.00 0.00 2.85
1990 2050 4.212214 CAGATGCTAAAATAGTCCGCCTTC 59.788 45.833 0.00 0.00 0.00 3.46
1991 2051 4.130118 CAGATGCTAAAATAGTCCGCCTT 58.870 43.478 0.00 0.00 0.00 4.35
1992 2052 3.134804 ACAGATGCTAAAATAGTCCGCCT 59.865 43.478 0.00 0.00 0.00 5.52
1993 2053 3.467803 ACAGATGCTAAAATAGTCCGCC 58.532 45.455 0.00 0.00 0.00 6.13
1994 2054 4.570772 TCAACAGATGCTAAAATAGTCCGC 59.429 41.667 0.00 0.00 0.00 5.54
1995 2055 6.662414 TTCAACAGATGCTAAAATAGTCCG 57.338 37.500 0.00 0.00 0.00 4.79
1996 2056 7.912250 CACATTCAACAGATGCTAAAATAGTCC 59.088 37.037 0.00 0.00 0.00 3.85
1997 2057 8.454106 ACACATTCAACAGATGCTAAAATAGTC 58.546 33.333 0.00 0.00 0.00 2.59
1998 2058 8.239314 CACACATTCAACAGATGCTAAAATAGT 58.761 33.333 0.00 0.00 0.00 2.12
1999 2059 8.453320 TCACACATTCAACAGATGCTAAAATAG 58.547 33.333 0.00 0.00 0.00 1.73
2000 2060 8.236586 GTCACACATTCAACAGATGCTAAAATA 58.763 33.333 0.00 0.00 0.00 1.40
2001 2061 7.040201 AGTCACACATTCAACAGATGCTAAAAT 60.040 33.333 0.00 0.00 0.00 1.82
2002 2062 6.262944 AGTCACACATTCAACAGATGCTAAAA 59.737 34.615 0.00 0.00 0.00 1.52
2003 2063 5.764686 AGTCACACATTCAACAGATGCTAAA 59.235 36.000 0.00 0.00 0.00 1.85
2004 2064 5.308014 AGTCACACATTCAACAGATGCTAA 58.692 37.500 0.00 0.00 0.00 3.09
2005 2065 4.898320 AGTCACACATTCAACAGATGCTA 58.102 39.130 0.00 0.00 0.00 3.49
2006 2066 3.748083 AGTCACACATTCAACAGATGCT 58.252 40.909 0.00 0.00 0.00 3.79
2007 2067 4.494350 AAGTCACACATTCAACAGATGC 57.506 40.909 0.00 0.00 0.00 3.91
2008 2068 6.958255 TGTTAAGTCACACATTCAACAGATG 58.042 36.000 0.00 0.00 0.00 2.90
2009 2069 6.205464 CCTGTTAAGTCACACATTCAACAGAT 59.795 38.462 11.92 0.00 42.38 2.90
2010 2070 5.527214 CCTGTTAAGTCACACATTCAACAGA 59.473 40.000 11.92 0.00 42.38 3.41
2011 2071 5.527214 TCCTGTTAAGTCACACATTCAACAG 59.473 40.000 0.00 0.00 40.50 3.16
2012 2072 5.295787 GTCCTGTTAAGTCACACATTCAACA 59.704 40.000 0.00 0.00 0.00 3.33
2013 2073 5.295787 TGTCCTGTTAAGTCACACATTCAAC 59.704 40.000 0.00 0.00 0.00 3.18
2014 2074 5.432645 TGTCCTGTTAAGTCACACATTCAA 58.567 37.500 0.00 0.00 0.00 2.69
2015 2075 5.029807 TGTCCTGTTAAGTCACACATTCA 57.970 39.130 0.00 0.00 0.00 2.57
2016 2076 5.163953 CGATGTCCTGTTAAGTCACACATTC 60.164 44.000 0.00 0.00 0.00 2.67
2017 2077 4.690748 CGATGTCCTGTTAAGTCACACATT 59.309 41.667 0.00 0.00 0.00 2.71
2018 2078 4.021456 TCGATGTCCTGTTAAGTCACACAT 60.021 41.667 0.00 0.00 0.00 3.21
2019 2079 3.319689 TCGATGTCCTGTTAAGTCACACA 59.680 43.478 0.00 0.00 0.00 3.72
2020 2080 3.909430 TCGATGTCCTGTTAAGTCACAC 58.091 45.455 0.00 0.00 0.00 3.82
2021 2081 4.801330 ATCGATGTCCTGTTAAGTCACA 57.199 40.909 0.00 0.00 0.00 3.58
2022 2082 6.481954 AAAATCGATGTCCTGTTAAGTCAC 57.518 37.500 0.00 0.00 0.00 3.67
2023 2083 7.330946 CACTAAAATCGATGTCCTGTTAAGTCA 59.669 37.037 0.00 0.00 0.00 3.41
2024 2084 7.544566 TCACTAAAATCGATGTCCTGTTAAGTC 59.455 37.037 0.00 0.00 0.00 3.01
2025 2085 7.383687 TCACTAAAATCGATGTCCTGTTAAGT 58.616 34.615 0.00 0.00 0.00 2.24
2026 2086 7.827819 TCACTAAAATCGATGTCCTGTTAAG 57.172 36.000 0.00 0.00 0.00 1.85
2027 2087 8.664798 CATTCACTAAAATCGATGTCCTGTTAA 58.335 33.333 0.00 0.00 0.00 2.01
2028 2088 8.038351 TCATTCACTAAAATCGATGTCCTGTTA 58.962 33.333 0.00 0.00 0.00 2.41
2029 2089 6.878923 TCATTCACTAAAATCGATGTCCTGTT 59.121 34.615 0.00 0.00 0.00 3.16
2030 2090 6.406370 TCATTCACTAAAATCGATGTCCTGT 58.594 36.000 0.00 0.00 0.00 4.00
2031 2091 6.908870 TCATTCACTAAAATCGATGTCCTG 57.091 37.500 0.00 0.00 0.00 3.86
2032 2092 7.331026 TCTTCATTCACTAAAATCGATGTCCT 58.669 34.615 0.00 0.00 0.00 3.85
2033 2093 7.539712 TCTTCATTCACTAAAATCGATGTCC 57.460 36.000 0.00 0.00 0.00 4.02
2055 2115 9.753674 TCCATGAGTTTCTGGTAAAAATAATCT 57.246 29.630 0.00 0.00 34.03 2.40
2058 2118 8.748412 CCATCCATGAGTTTCTGGTAAAAATAA 58.252 33.333 0.00 0.00 34.03 1.40
2059 2119 8.112822 TCCATCCATGAGTTTCTGGTAAAAATA 58.887 33.333 0.00 0.00 34.03 1.40
2060 2120 6.953520 TCCATCCATGAGTTTCTGGTAAAAAT 59.046 34.615 0.00 0.00 34.03 1.82
2061 2121 6.310941 TCCATCCATGAGTTTCTGGTAAAAA 58.689 36.000 0.00 0.00 34.03 1.94
2062 2122 5.886609 TCCATCCATGAGTTTCTGGTAAAA 58.113 37.500 0.00 0.00 34.03 1.52
2063 2123 5.512942 TCCATCCATGAGTTTCTGGTAAA 57.487 39.130 0.00 0.00 34.03 2.01
2064 2124 5.044919 ACATCCATCCATGAGTTTCTGGTAA 60.045 40.000 0.00 0.00 34.03 2.85
2065 2125 4.474651 ACATCCATCCATGAGTTTCTGGTA 59.525 41.667 0.00 0.00 34.03 3.25
2066 2126 3.267812 ACATCCATCCATGAGTTTCTGGT 59.732 43.478 0.00 0.00 34.03 4.00
2067 2127 3.630769 CACATCCATCCATGAGTTTCTGG 59.369 47.826 0.00 0.00 0.00 3.86
2068 2128 4.267536 ACACATCCATCCATGAGTTTCTG 58.732 43.478 0.00 0.00 0.00 3.02
2069 2129 4.581309 ACACATCCATCCATGAGTTTCT 57.419 40.909 0.00 0.00 0.00 2.52
2070 2130 5.649782 AAACACATCCATCCATGAGTTTC 57.350 39.130 0.00 0.00 41.11 2.78
2071 2131 7.722949 ATAAAACACATCCATCCATGAGTTT 57.277 32.000 0.00 3.94 44.51 2.66
2072 2132 7.722949 AATAAAACACATCCATCCATGAGTT 57.277 32.000 0.00 0.00 38.69 3.01
2073 2133 7.722949 AAATAAAACACATCCATCCATGAGT 57.277 32.000 0.00 0.00 0.00 3.41
2074 2134 9.090692 GAAAAATAAAACACATCCATCCATGAG 57.909 33.333 0.00 0.00 0.00 2.90
2075 2135 7.758980 CGAAAAATAAAACACATCCATCCATGA 59.241 33.333 0.00 0.00 0.00 3.07
2076 2136 7.758980 TCGAAAAATAAAACACATCCATCCATG 59.241 33.333 0.00 0.00 0.00 3.66
2077 2137 7.835822 TCGAAAAATAAAACACATCCATCCAT 58.164 30.769 0.00 0.00 0.00 3.41
2078 2138 7.220741 TCGAAAAATAAAACACATCCATCCA 57.779 32.000 0.00 0.00 0.00 3.41
2079 2139 7.812669 AGTTCGAAAAATAAAACACATCCATCC 59.187 33.333 0.00 0.00 0.00 3.51
2080 2140 8.638565 CAGTTCGAAAAATAAAACACATCCATC 58.361 33.333 0.00 0.00 0.00 3.51
2081 2141 8.141268 ACAGTTCGAAAAATAAAACACATCCAT 58.859 29.630 0.00 0.00 0.00 3.41
2082 2142 7.484975 ACAGTTCGAAAAATAAAACACATCCA 58.515 30.769 0.00 0.00 0.00 3.41
2083 2143 7.924103 ACAGTTCGAAAAATAAAACACATCC 57.076 32.000 0.00 0.00 0.00 3.51
2094 2154 8.237267 GGATTGACAGATAACAGTTCGAAAAAT 58.763 33.333 0.00 0.00 0.00 1.82
2095 2155 7.444183 AGGATTGACAGATAACAGTTCGAAAAA 59.556 33.333 0.00 0.00 0.00 1.94
2096 2156 6.934645 AGGATTGACAGATAACAGTTCGAAAA 59.065 34.615 0.00 0.00 0.00 2.29
2097 2157 6.464222 AGGATTGACAGATAACAGTTCGAAA 58.536 36.000 0.00 0.00 0.00 3.46
2098 2158 6.037786 AGGATTGACAGATAACAGTTCGAA 57.962 37.500 0.00 0.00 0.00 3.71
2099 2159 5.661056 AGGATTGACAGATAACAGTTCGA 57.339 39.130 0.00 0.00 0.00 3.71
2116 2176 4.021192 CCAACAATACCAGTTGCAAGGATT 60.021 41.667 11.47 0.42 43.74 3.01
2117 2177 3.511146 CCAACAATACCAGTTGCAAGGAT 59.489 43.478 11.47 0.00 43.74 3.24
2118 2178 2.890311 CCAACAATACCAGTTGCAAGGA 59.110 45.455 11.47 0.00 43.74 3.36
2119 2179 2.610232 GCCAACAATACCAGTTGCAAGG 60.610 50.000 0.00 0.18 43.74 3.61
2120 2180 2.297033 AGCCAACAATACCAGTTGCAAG 59.703 45.455 0.00 0.00 43.74 4.01
2121 2181 2.315176 AGCCAACAATACCAGTTGCAA 58.685 42.857 0.00 0.00 43.74 4.08
2122 2182 1.993956 AGCCAACAATACCAGTTGCA 58.006 45.000 0.00 0.00 43.74 4.08
2123 2183 2.159572 CGTAGCCAACAATACCAGTTGC 60.160 50.000 0.00 0.00 43.74 4.17
2124 2184 3.740044 CGTAGCCAACAATACCAGTTG 57.260 47.619 0.00 0.00 44.47 3.16
2140 2200 2.349969 TACGGCTCCAGCATGCGTAG 62.350 60.000 13.01 11.96 44.36 3.51
2141 2201 1.744320 ATACGGCTCCAGCATGCGTA 61.744 55.000 13.01 6.93 44.36 4.42
2142 2202 2.593468 AATACGGCTCCAGCATGCGT 62.593 55.000 13.01 4.65 44.36 5.24
2143 2203 1.439353 AAATACGGCTCCAGCATGCG 61.439 55.000 13.01 7.31 44.36 4.73
2144 2204 0.740737 AAAATACGGCTCCAGCATGC 59.259 50.000 10.51 10.51 44.36 4.06
2145 2205 2.016318 TCAAAATACGGCTCCAGCATG 58.984 47.619 0.03 0.00 44.36 4.06
2146 2206 2.418368 TCAAAATACGGCTCCAGCAT 57.582 45.000 0.03 0.00 44.36 3.79
2147 2207 2.418368 ATCAAAATACGGCTCCAGCA 57.582 45.000 0.03 0.00 44.36 4.41
2148 2208 5.008613 TGAAATATCAAAATACGGCTCCAGC 59.991 40.000 0.00 0.00 34.52 4.85
2149 2209 6.260936 AGTGAAATATCAAAATACGGCTCCAG 59.739 38.462 0.00 0.00 37.30 3.86
2150 2210 6.119536 AGTGAAATATCAAAATACGGCTCCA 58.880 36.000 0.00 0.00 37.30 3.86
2151 2211 6.619801 AGTGAAATATCAAAATACGGCTCC 57.380 37.500 0.00 0.00 37.30 4.70
2152 2212 7.693952 TCAAGTGAAATATCAAAATACGGCTC 58.306 34.615 0.00 0.00 37.30 4.70
2153 2213 7.624360 TCAAGTGAAATATCAAAATACGGCT 57.376 32.000 0.00 0.00 37.30 5.52
2154 2214 7.432252 CCTTCAAGTGAAATATCAAAATACGGC 59.568 37.037 0.00 0.00 37.30 5.68
2155 2215 8.458843 ACCTTCAAGTGAAATATCAAAATACGG 58.541 33.333 0.00 0.00 37.30 4.02
2172 2232 9.503399 CCAAGATTACTTTTAGTACCTTCAAGT 57.497 33.333 0.00 0.00 33.70 3.16
2173 2233 9.720769 TCCAAGATTACTTTTAGTACCTTCAAG 57.279 33.333 0.00 0.00 33.70 3.02
2175 2235 9.498176 GTTCCAAGATTACTTTTAGTACCTTCA 57.502 33.333 0.00 0.00 33.70 3.02
2176 2236 9.498176 TGTTCCAAGATTACTTTTAGTACCTTC 57.502 33.333 0.00 0.00 33.70 3.46
2177 2237 9.503399 CTGTTCCAAGATTACTTTTAGTACCTT 57.497 33.333 0.00 0.00 33.70 3.50
2178 2238 7.606839 GCTGTTCCAAGATTACTTTTAGTACCT 59.393 37.037 0.00 0.00 33.70 3.08
2179 2239 7.389607 TGCTGTTCCAAGATTACTTTTAGTACC 59.610 37.037 0.00 0.00 33.70 3.34
2180 2240 8.319143 TGCTGTTCCAAGATTACTTTTAGTAC 57.681 34.615 0.00 0.00 33.70 2.73
2181 2241 7.606456 CCTGCTGTTCCAAGATTACTTTTAGTA 59.394 37.037 0.00 0.00 33.70 1.82
2182 2242 6.431234 CCTGCTGTTCCAAGATTACTTTTAGT 59.569 38.462 0.00 0.00 33.70 2.24
2183 2243 6.655003 TCCTGCTGTTCCAAGATTACTTTTAG 59.345 38.462 0.00 0.00 33.70 1.85
2184 2244 6.539173 TCCTGCTGTTCCAAGATTACTTTTA 58.461 36.000 0.00 0.00 33.70 1.52
2185 2245 5.385198 TCCTGCTGTTCCAAGATTACTTTT 58.615 37.500 0.00 0.00 33.70 2.27
2186 2246 4.985538 TCCTGCTGTTCCAAGATTACTTT 58.014 39.130 0.00 0.00 33.70 2.66
2187 2247 4.640771 TCCTGCTGTTCCAAGATTACTT 57.359 40.909 0.00 0.00 36.73 2.24
2188 2248 4.640771 TTCCTGCTGTTCCAAGATTACT 57.359 40.909 0.00 0.00 0.00 2.24
2189 2249 5.705609 TTTTCCTGCTGTTCCAAGATTAC 57.294 39.130 0.00 0.00 0.00 1.89
2223 2283 9.928236 GTGCAAATGTGTAATAAAAATGTTGTT 57.072 25.926 0.00 0.00 0.00 2.83
2224 2284 9.323985 AGTGCAAATGTGTAATAAAAATGTTGT 57.676 25.926 0.00 0.00 0.00 3.32
2225 2285 9.583530 CAGTGCAAATGTGTAATAAAAATGTTG 57.416 29.630 0.00 0.00 0.00 3.33
2226 2286 8.772705 CCAGTGCAAATGTGTAATAAAAATGTT 58.227 29.630 0.00 0.00 0.00 2.71
2227 2287 7.387397 CCCAGTGCAAATGTGTAATAAAAATGT 59.613 33.333 0.00 0.00 0.00 2.71
2228 2288 7.601886 TCCCAGTGCAAATGTGTAATAAAAATG 59.398 33.333 0.00 0.00 0.00 2.32
2229 2289 7.675062 TCCCAGTGCAAATGTGTAATAAAAAT 58.325 30.769 0.00 0.00 0.00 1.82
2230 2290 7.055667 TCCCAGTGCAAATGTGTAATAAAAA 57.944 32.000 0.00 0.00 0.00 1.94
2231 2291 6.656632 TCCCAGTGCAAATGTGTAATAAAA 57.343 33.333 0.00 0.00 0.00 1.52
2232 2292 6.491745 TCTTCCCAGTGCAAATGTGTAATAAA 59.508 34.615 0.00 0.00 0.00 1.40
2233 2293 6.007076 TCTTCCCAGTGCAAATGTGTAATAA 58.993 36.000 0.00 0.00 0.00 1.40
2234 2294 5.565509 TCTTCCCAGTGCAAATGTGTAATA 58.434 37.500 0.00 0.00 0.00 0.98
2235 2295 4.406456 TCTTCCCAGTGCAAATGTGTAAT 58.594 39.130 0.00 0.00 0.00 1.89
2236 2296 3.826524 TCTTCCCAGTGCAAATGTGTAA 58.173 40.909 0.00 0.00 0.00 2.41
2237 2297 3.500448 TCTTCCCAGTGCAAATGTGTA 57.500 42.857 0.00 0.00 0.00 2.90
2238 2298 2.363306 TCTTCCCAGTGCAAATGTGT 57.637 45.000 0.00 0.00 0.00 3.72
2239 2299 3.947910 AATCTTCCCAGTGCAAATGTG 57.052 42.857 0.00 0.00 0.00 3.21
2240 2300 5.324409 TCTTAATCTTCCCAGTGCAAATGT 58.676 37.500 0.00 0.00 0.00 2.71
2241 2301 5.902613 TCTTAATCTTCCCAGTGCAAATG 57.097 39.130 0.00 0.00 0.00 2.32
2242 2302 7.615365 TGTATTCTTAATCTTCCCAGTGCAAAT 59.385 33.333 0.00 0.00 0.00 2.32
2243 2303 6.945435 TGTATTCTTAATCTTCCCAGTGCAAA 59.055 34.615 0.00 0.00 0.00 3.68
2244 2304 6.374333 GTGTATTCTTAATCTTCCCAGTGCAA 59.626 38.462 0.00 0.00 0.00 4.08
2245 2305 5.880332 GTGTATTCTTAATCTTCCCAGTGCA 59.120 40.000 0.00 0.00 0.00 4.57
2246 2306 5.880332 TGTGTATTCTTAATCTTCCCAGTGC 59.120 40.000 0.00 0.00 0.00 4.40
2247 2307 7.921786 TTGTGTATTCTTAATCTTCCCAGTG 57.078 36.000 0.00 0.00 0.00 3.66
2273 2333 9.546428 AACACAGCTAAAATAATTTGCTTTCTT 57.454 25.926 0.00 0.00 33.54 2.52
2274 2334 9.546428 AAACACAGCTAAAATAATTTGCTTTCT 57.454 25.926 0.00 0.00 33.54 2.52
2275 2335 9.584839 CAAACACAGCTAAAATAATTTGCTTTC 57.415 29.630 0.00 0.00 33.54 2.62
2276 2336 8.558700 CCAAACACAGCTAAAATAATTTGCTTT 58.441 29.630 0.00 0.00 33.54 3.51
2277 2337 7.930865 TCCAAACACAGCTAAAATAATTTGCTT 59.069 29.630 0.00 0.00 33.54 3.91
2278 2338 7.384932 GTCCAAACACAGCTAAAATAATTTGCT 59.615 33.333 0.00 0.00 35.03 3.91
2279 2339 7.170658 TGTCCAAACACAGCTAAAATAATTTGC 59.829 33.333 0.00 0.00 0.00 3.68
2280 2340 8.586570 TGTCCAAACACAGCTAAAATAATTTG 57.413 30.769 0.00 0.00 0.00 2.32
2296 2356 4.269183 ACAATCTCAACAGTGTCCAAACA 58.731 39.130 0.00 0.00 0.00 2.83
2297 2357 4.900635 ACAATCTCAACAGTGTCCAAAC 57.099 40.909 0.00 0.00 0.00 2.93
2298 2358 7.397892 TTTTACAATCTCAACAGTGTCCAAA 57.602 32.000 0.00 0.00 0.00 3.28
2299 2359 7.122055 ACTTTTTACAATCTCAACAGTGTCCAA 59.878 33.333 0.00 0.00 0.00 3.53
2300 2360 6.601613 ACTTTTTACAATCTCAACAGTGTCCA 59.398 34.615 0.00 0.00 0.00 4.02
2301 2361 6.912591 CACTTTTTACAATCTCAACAGTGTCC 59.087 38.462 0.00 0.00 0.00 4.02
2302 2362 7.693952 TCACTTTTTACAATCTCAACAGTGTC 58.306 34.615 0.00 0.00 32.63 3.67
2303 2363 7.624360 TCACTTTTTACAATCTCAACAGTGT 57.376 32.000 0.00 0.00 32.63 3.55
2304 2364 8.909708 TTTCACTTTTTACAATCTCAACAGTG 57.090 30.769 0.00 0.00 0.00 3.66
2305 2365 9.520204 CATTTCACTTTTTACAATCTCAACAGT 57.480 29.630 0.00 0.00 0.00 3.55
2306 2366 8.971321 CCATTTCACTTTTTACAATCTCAACAG 58.029 33.333 0.00 0.00 0.00 3.16
2307 2367 7.437862 GCCATTTCACTTTTTACAATCTCAACA 59.562 33.333 0.00 0.00 0.00 3.33
2308 2368 7.653311 AGCCATTTCACTTTTTACAATCTCAAC 59.347 33.333 0.00 0.00 0.00 3.18
2309 2369 7.652909 CAGCCATTTCACTTTTTACAATCTCAA 59.347 33.333 0.00 0.00 0.00 3.02
2310 2370 7.014134 TCAGCCATTTCACTTTTTACAATCTCA 59.986 33.333 0.00 0.00 0.00 3.27
2311 2371 7.370383 TCAGCCATTTCACTTTTTACAATCTC 58.630 34.615 0.00 0.00 0.00 2.75
2312 2372 7.288810 TCAGCCATTTCACTTTTTACAATCT 57.711 32.000 0.00 0.00 0.00 2.40
2313 2373 7.945033 TTCAGCCATTTCACTTTTTACAATC 57.055 32.000 0.00 0.00 0.00 2.67
2315 2375 9.995003 AATATTCAGCCATTTCACTTTTTACAA 57.005 25.926 0.00 0.00 0.00 2.41
2316 2376 9.995003 AAATATTCAGCCATTTCACTTTTTACA 57.005 25.926 0.00 0.00 0.00 2.41
2319 2379 9.211485 CTCAAATATTCAGCCATTTCACTTTTT 57.789 29.630 0.00 0.00 0.00 1.94
2320 2380 7.820872 CCTCAAATATTCAGCCATTTCACTTTT 59.179 33.333 0.00 0.00 0.00 2.27
2321 2381 7.178983 TCCTCAAATATTCAGCCATTTCACTTT 59.821 33.333 0.00 0.00 0.00 2.66
2322 2382 6.664816 TCCTCAAATATTCAGCCATTTCACTT 59.335 34.615 0.00 0.00 0.00 3.16
2323 2383 6.189859 TCCTCAAATATTCAGCCATTTCACT 58.810 36.000 0.00 0.00 0.00 3.41
2324 2384 6.319658 TCTCCTCAAATATTCAGCCATTTCAC 59.680 38.462 0.00 0.00 0.00 3.18
2325 2385 6.425735 TCTCCTCAAATATTCAGCCATTTCA 58.574 36.000 0.00 0.00 0.00 2.69
2326 2386 6.949352 TCTCCTCAAATATTCAGCCATTTC 57.051 37.500 0.00 0.00 0.00 2.17
2327 2387 7.067981 GTCTTCTCCTCAAATATTCAGCCATTT 59.932 37.037 0.00 0.00 0.00 2.32
2328 2388 6.545298 GTCTTCTCCTCAAATATTCAGCCATT 59.455 38.462 0.00 0.00 0.00 3.16
2329 2389 6.060788 GTCTTCTCCTCAAATATTCAGCCAT 58.939 40.000 0.00 0.00 0.00 4.40
2330 2390 5.045651 TGTCTTCTCCTCAAATATTCAGCCA 60.046 40.000 0.00 0.00 0.00 4.75
2331 2391 5.431765 TGTCTTCTCCTCAAATATTCAGCC 58.568 41.667 0.00 0.00 0.00 4.85
2332 2392 6.257630 GTCTGTCTTCTCCTCAAATATTCAGC 59.742 42.308 0.00 0.00 0.00 4.26
2333 2393 7.555087 AGTCTGTCTTCTCCTCAAATATTCAG 58.445 38.462 0.00 0.00 0.00 3.02
2334 2394 7.487822 AGTCTGTCTTCTCCTCAAATATTCA 57.512 36.000 0.00 0.00 0.00 2.57
2339 2399 9.883142 CTAAAATAGTCTGTCTTCTCCTCAAAT 57.117 33.333 0.00 0.00 0.00 2.32
2340 2400 7.819900 GCTAAAATAGTCTGTCTTCTCCTCAAA 59.180 37.037 0.00 0.00 0.00 2.69
2341 2401 7.039011 TGCTAAAATAGTCTGTCTTCTCCTCAA 60.039 37.037 0.00 0.00 0.00 3.02
2342 2402 6.437477 TGCTAAAATAGTCTGTCTTCTCCTCA 59.563 38.462 0.00 0.00 0.00 3.86
2423 2483 2.494059 CACCGTCCATGAGTTTCTGTT 58.506 47.619 0.00 0.00 0.00 3.16
2426 2486 1.348064 TCCACCGTCCATGAGTTTCT 58.652 50.000 0.00 0.00 0.00 2.52
2427 2487 2.178912 TTCCACCGTCCATGAGTTTC 57.821 50.000 0.00 0.00 0.00 2.78
2428 2488 2.879103 ATTCCACCGTCCATGAGTTT 57.121 45.000 0.00 0.00 0.00 2.66
2439 2500 3.727673 CGCAGTGAACATTAATTCCACCG 60.728 47.826 0.00 3.54 0.00 4.94
2445 2506 3.932545 TTGCCGCAGTGAACATTAATT 57.067 38.095 0.00 0.00 0.00 1.40
2471 2532 5.876357 ACAATTACAGTTCCACATGTACCT 58.124 37.500 0.00 0.00 31.83 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.