Multiple sequence alignment - TraesCS5B01G264400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G264400 chr5B 100.000 2862 0 0 1 2862 448585800 448588661 0.000000e+00 5286.0
1 TraesCS5B01G264400 chr7A 98.930 2244 24 0 619 2862 705281555 705283798 0.000000e+00 4012.0
2 TraesCS5B01G264400 chr7A 98.708 2244 28 1 619 2862 556141847 556139605 0.000000e+00 3982.0
3 TraesCS5B01G264400 chr4A 98.262 2244 20 2 619 2862 3252928 3255152 0.000000e+00 3910.0
4 TraesCS5B01G264400 chr1B 97.415 2244 20 2 619 2862 30529928 30532133 0.000000e+00 3788.0
5 TraesCS5B01G264400 chr1B 90.112 890 57 14 1986 2862 663658095 663657224 0.000000e+00 1127.0
6 TraesCS5B01G264400 chr1A 97.166 2258 30 6 619 2862 485328197 485330434 0.000000e+00 3784.0
7 TraesCS5B01G264400 chr1A 97.932 1741 17 2 619 2358 507989878 507991600 0.000000e+00 2998.0
8 TraesCS5B01G264400 chr2B 96.791 2275 36 12 617 2862 629108932 629111198 0.000000e+00 3762.0
9 TraesCS5B01G264400 chr2B 95.670 485 21 0 2377 2861 571948016 571948500 0.000000e+00 780.0
10 TraesCS5B01G264400 chr5A 97.908 1625 14 1 617 2241 666315904 666317508 0.000000e+00 2795.0
11 TraesCS5B01G264400 chr4B 94.869 1715 58 17 618 2307 134586679 134584970 0.000000e+00 2652.0
12 TraesCS5B01G264400 chr4B 95.670 485 21 0 2377 2861 134584937 134584453 0.000000e+00 780.0
13 TraesCS5B01G264400 chr3B 90.354 1555 70 40 617 2116 379678263 379676734 0.000000e+00 1967.0
14 TraesCS5B01G264400 chr3B 97.003 367 10 1 619 985 457636054 457636419 1.460000e-172 616.0
15 TraesCS5B01G264400 chr3A 96.502 486 17 0 2377 2862 11578954 11579439 0.000000e+00 804.0
16 TraesCS5B01G264400 chr5D 89.815 108 5 3 403 510 375732849 375732950 1.790000e-27 134.0
17 TraesCS5B01G264400 chr5D 97.917 48 1 0 278 325 375732764 375732811 1.830000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G264400 chr5B 448585800 448588661 2861 False 5286 5286 100.0000 1 2862 1 chr5B.!!$F1 2861
1 TraesCS5B01G264400 chr7A 705281555 705283798 2243 False 4012 4012 98.9300 619 2862 1 chr7A.!!$F1 2243
2 TraesCS5B01G264400 chr7A 556139605 556141847 2242 True 3982 3982 98.7080 619 2862 1 chr7A.!!$R1 2243
3 TraesCS5B01G264400 chr4A 3252928 3255152 2224 False 3910 3910 98.2620 619 2862 1 chr4A.!!$F1 2243
4 TraesCS5B01G264400 chr1B 30529928 30532133 2205 False 3788 3788 97.4150 619 2862 1 chr1B.!!$F1 2243
5 TraesCS5B01G264400 chr1B 663657224 663658095 871 True 1127 1127 90.1120 1986 2862 1 chr1B.!!$R1 876
6 TraesCS5B01G264400 chr1A 485328197 485330434 2237 False 3784 3784 97.1660 619 2862 1 chr1A.!!$F1 2243
7 TraesCS5B01G264400 chr1A 507989878 507991600 1722 False 2998 2998 97.9320 619 2358 1 chr1A.!!$F2 1739
8 TraesCS5B01G264400 chr2B 629108932 629111198 2266 False 3762 3762 96.7910 617 2862 1 chr2B.!!$F2 2245
9 TraesCS5B01G264400 chr5A 666315904 666317508 1604 False 2795 2795 97.9080 617 2241 1 chr5A.!!$F1 1624
10 TraesCS5B01G264400 chr4B 134584453 134586679 2226 True 1716 2652 95.2695 618 2861 2 chr4B.!!$R1 2243
11 TraesCS5B01G264400 chr3B 379676734 379678263 1529 True 1967 1967 90.3540 617 2116 1 chr3B.!!$R1 1499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.109132 CCGGCCACAGATTTCAAAGC 60.109 55.0 2.24 0.0 0.00 3.51 F
203 204 0.109723 AGCTAGCTACTCCTCCTCCG 59.890 60.0 17.69 0.0 0.00 4.63 F
235 236 0.110419 TTCATTCTTTTGGCGCGTCG 60.110 50.0 6.09 0.0 0.00 5.12 F
568 569 0.178903 AGTAAGTGGGGCTGACTGGA 60.179 55.0 0.00 0.0 37.52 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1634 1729 0.178953 AGTTTGCCAATCACCTGCCT 60.179 50.0 0.0 0.0 0.0 4.75 R
1635 1730 0.681175 AAGTTTGCCAATCACCTGCC 59.319 50.0 0.0 0.0 0.0 4.85 R
1636 1731 1.787012 CAAGTTTGCCAATCACCTGC 58.213 50.0 0.0 0.0 0.0 4.85 R
2329 2504 2.519771 ATGTGCCCATGTTGATCTGT 57.480 45.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.994868 AGCGTCATATCTCGATTAACTTTC 57.005 37.500 0.00 0.00 0.00 2.62
24 25 6.504398 AGCGTCATATCTCGATTAACTTTCA 58.496 36.000 0.00 0.00 0.00 2.69
25 26 6.638873 AGCGTCATATCTCGATTAACTTTCAG 59.361 38.462 0.00 0.00 0.00 3.02
26 27 6.637254 GCGTCATATCTCGATTAACTTTCAGA 59.363 38.462 0.00 0.00 0.00 3.27
27 28 7.149047 GCGTCATATCTCGATTAACTTTCAGAG 60.149 40.741 0.00 0.00 0.00 3.35
28 29 8.070769 CGTCATATCTCGATTAACTTTCAGAGA 58.929 37.037 0.00 0.00 38.81 3.10
29 30 9.737427 GTCATATCTCGATTAACTTTCAGAGAA 57.263 33.333 0.00 0.00 38.11 2.87
30 31 9.958234 TCATATCTCGATTAACTTTCAGAGAAG 57.042 33.333 0.00 0.00 38.11 2.85
31 32 9.190858 CATATCTCGATTAACTTTCAGAGAAGG 57.809 37.037 0.00 0.00 38.11 3.46
32 33 6.591750 TCTCGATTAACTTTCAGAGAAGGT 57.408 37.500 0.00 0.00 32.59 3.50
33 34 6.994221 TCTCGATTAACTTTCAGAGAAGGTT 58.006 36.000 11.18 11.18 32.59 3.50
34 35 7.091443 TCTCGATTAACTTTCAGAGAAGGTTC 58.909 38.462 9.99 0.00 32.59 3.62
35 36 6.755206 TCGATTAACTTTCAGAGAAGGTTCA 58.245 36.000 9.99 1.63 0.00 3.18
36 37 7.214381 TCGATTAACTTTCAGAGAAGGTTCAA 58.786 34.615 9.99 5.34 0.00 2.69
37 38 7.713507 TCGATTAACTTTCAGAGAAGGTTCAAA 59.286 33.333 9.99 2.49 0.00 2.69
38 39 8.342634 CGATTAACTTTCAGAGAAGGTTCAAAA 58.657 33.333 9.99 1.90 0.00 2.44
40 41 9.803315 ATTAACTTTCAGAGAAGGTTCAAAAAC 57.197 29.630 9.99 0.00 34.46 2.43
41 42 6.834168 ACTTTCAGAGAAGGTTCAAAAACA 57.166 33.333 0.00 0.00 37.10 2.83
42 43 6.621613 ACTTTCAGAGAAGGTTCAAAAACAC 58.378 36.000 0.00 0.00 37.10 3.32
43 44 4.875544 TCAGAGAAGGTTCAAAAACACG 57.124 40.909 0.00 0.00 37.10 4.49
44 45 3.625764 TCAGAGAAGGTTCAAAAACACGG 59.374 43.478 0.00 0.00 37.10 4.94
45 46 3.625764 CAGAGAAGGTTCAAAAACACGGA 59.374 43.478 0.00 0.00 37.10 4.69
46 47 4.095782 CAGAGAAGGTTCAAAAACACGGAA 59.904 41.667 0.00 0.00 37.10 4.30
47 48 4.887655 AGAGAAGGTTCAAAAACACGGAAT 59.112 37.500 0.00 0.00 37.10 3.01
48 49 5.359860 AGAGAAGGTTCAAAAACACGGAATT 59.640 36.000 0.00 0.00 37.10 2.17
49 50 5.972935 AGAAGGTTCAAAAACACGGAATTT 58.027 33.333 0.00 0.00 37.10 1.82
50 51 6.403049 AGAAGGTTCAAAAACACGGAATTTT 58.597 32.000 0.00 0.00 37.10 1.82
51 52 6.312672 AGAAGGTTCAAAAACACGGAATTTTG 59.687 34.615 12.69 12.69 44.15 2.44
52 53 4.331443 AGGTTCAAAAACACGGAATTTTGC 59.669 37.500 13.59 4.81 43.08 3.68
53 54 4.495019 GGTTCAAAAACACGGAATTTTGCC 60.495 41.667 13.59 8.68 43.08 4.52
54 55 7.680369 GGTTCAAAAACACGGAATTTTGCCG 62.680 44.000 13.59 0.00 43.08 5.69
59 60 2.573167 CGGAATTTTGCCGCGACG 60.573 61.111 8.23 0.00 42.55 5.12
77 78 2.887568 GCGACCAGCCGTGAGATG 60.888 66.667 0.00 0.00 40.81 2.90
78 79 2.885113 CGACCAGCCGTGAGATGA 59.115 61.111 0.00 0.00 0.00 2.92
79 80 1.226802 CGACCAGCCGTGAGATGAG 60.227 63.158 0.00 0.00 0.00 2.90
80 81 1.657751 CGACCAGCCGTGAGATGAGA 61.658 60.000 0.00 0.00 0.00 3.27
81 82 0.532573 GACCAGCCGTGAGATGAGAA 59.467 55.000 0.00 0.00 0.00 2.87
82 83 0.976641 ACCAGCCGTGAGATGAGAAA 59.023 50.000 0.00 0.00 0.00 2.52
83 84 1.338200 ACCAGCCGTGAGATGAGAAAC 60.338 52.381 0.00 0.00 0.00 2.78
84 85 0.994995 CAGCCGTGAGATGAGAAACG 59.005 55.000 0.00 0.00 35.85 3.60
85 86 0.888619 AGCCGTGAGATGAGAAACGA 59.111 50.000 0.00 0.00 38.27 3.85
86 87 1.272490 AGCCGTGAGATGAGAAACGAA 59.728 47.619 0.00 0.00 38.27 3.85
87 88 2.066262 GCCGTGAGATGAGAAACGAAA 58.934 47.619 0.00 0.00 38.27 3.46
88 89 2.092838 GCCGTGAGATGAGAAACGAAAG 59.907 50.000 0.00 0.00 38.27 2.62
102 103 3.753294 ACGAAAGTTCAGAGGTGACAT 57.247 42.857 0.00 0.00 46.40 3.06
103 104 3.654414 ACGAAAGTTCAGAGGTGACATC 58.346 45.455 0.00 0.00 46.40 3.06
104 105 3.069586 ACGAAAGTTCAGAGGTGACATCA 59.930 43.478 0.00 0.00 46.40 3.07
105 106 3.430218 CGAAAGTTCAGAGGTGACATCAC 59.570 47.826 0.00 3.27 45.72 3.06
118 119 2.194271 GACATCACGTCGGAAAGATCC 58.806 52.381 0.00 0.00 42.80 3.36
126 127 4.225497 GGAAAGATCCGGCCACAG 57.775 61.111 2.24 0.00 35.59 3.66
127 128 1.602237 GGAAAGATCCGGCCACAGA 59.398 57.895 2.24 0.00 35.59 3.41
128 129 0.181350 GGAAAGATCCGGCCACAGAT 59.819 55.000 2.24 0.72 35.59 2.90
129 130 1.408822 GGAAAGATCCGGCCACAGATT 60.409 52.381 2.24 0.00 35.59 2.40
130 131 2.369394 GAAAGATCCGGCCACAGATTT 58.631 47.619 2.24 0.00 0.00 2.17
131 132 2.044123 AAGATCCGGCCACAGATTTC 57.956 50.000 2.24 0.00 0.00 2.17
132 133 0.911769 AGATCCGGCCACAGATTTCA 59.088 50.000 2.24 0.00 0.00 2.69
133 134 1.281867 AGATCCGGCCACAGATTTCAA 59.718 47.619 2.24 0.00 0.00 2.69
134 135 2.091541 GATCCGGCCACAGATTTCAAA 58.908 47.619 2.24 0.00 0.00 2.69
135 136 1.533625 TCCGGCCACAGATTTCAAAG 58.466 50.000 2.24 0.00 0.00 2.77
136 137 0.109132 CCGGCCACAGATTTCAAAGC 60.109 55.000 2.24 0.00 0.00 3.51
137 138 0.454957 CGGCCACAGATTTCAAAGCG 60.455 55.000 2.24 0.00 0.00 4.68
138 139 0.733909 GGCCACAGATTTCAAAGCGC 60.734 55.000 0.00 0.00 0.00 5.92
139 140 1.067199 GCCACAGATTTCAAAGCGCG 61.067 55.000 0.00 0.00 0.00 6.86
140 141 1.067199 CCACAGATTTCAAAGCGCGC 61.067 55.000 26.66 26.66 0.00 6.86
141 142 1.154413 ACAGATTTCAAAGCGCGCG 60.154 52.632 28.44 28.44 0.00 6.86
142 143 1.154413 CAGATTTCAAAGCGCGCGT 60.154 52.632 32.35 21.73 0.00 6.01
143 144 1.122419 CAGATTTCAAAGCGCGCGTC 61.122 55.000 32.35 22.88 0.00 5.19
144 145 1.863446 GATTTCAAAGCGCGCGTCC 60.863 57.895 32.35 16.02 0.00 4.79
145 146 3.645157 ATTTCAAAGCGCGCGTCCG 62.645 57.895 32.35 17.34 37.57 4.79
149 150 4.501714 AAAGCGCGCGTCCGGATA 62.502 61.111 32.35 0.00 34.32 2.59
189 190 4.691820 CGCGGGCGAGCTAGCTAG 62.692 72.222 19.38 19.42 42.83 3.42
200 201 2.579410 GCTAGCTAGCTACTCCTCCT 57.421 55.000 33.71 0.00 45.62 3.69
201 202 2.433436 GCTAGCTAGCTACTCCTCCTC 58.567 57.143 33.71 4.79 45.62 3.71
202 203 2.878526 GCTAGCTAGCTACTCCTCCTCC 60.879 59.091 33.71 4.59 45.62 4.30
203 204 0.109723 AGCTAGCTACTCCTCCTCCG 59.890 60.000 17.69 0.00 0.00 4.63
204 205 0.891904 GCTAGCTACTCCTCCTCCGG 60.892 65.000 7.70 0.00 0.00 5.14
205 206 0.766131 CTAGCTACTCCTCCTCCGGA 59.234 60.000 2.93 2.93 0.00 5.14
213 214 3.423179 CTCCTCCGGAGTAGCGTC 58.577 66.667 29.25 0.00 44.25 5.19
214 215 1.153127 CTCCTCCGGAGTAGCGTCT 60.153 63.158 29.25 0.00 44.25 4.18
215 216 0.748729 CTCCTCCGGAGTAGCGTCTT 60.749 60.000 29.25 0.00 44.25 3.01
216 217 0.323178 TCCTCCGGAGTAGCGTCTTT 60.323 55.000 29.25 0.00 0.00 2.52
217 218 0.531200 CCTCCGGAGTAGCGTCTTTT 59.469 55.000 29.25 0.00 0.00 2.27
218 219 1.469423 CCTCCGGAGTAGCGTCTTTTC 60.469 57.143 29.25 0.00 0.00 2.29
219 220 1.201647 CTCCGGAGTAGCGTCTTTTCA 59.798 52.381 24.04 0.00 0.00 2.69
220 221 1.822990 TCCGGAGTAGCGTCTTTTCAT 59.177 47.619 0.00 0.00 0.00 2.57
221 222 2.232941 TCCGGAGTAGCGTCTTTTCATT 59.767 45.455 0.00 0.00 0.00 2.57
222 223 2.603560 CCGGAGTAGCGTCTTTTCATTC 59.396 50.000 0.00 0.00 0.00 2.67
223 224 3.512680 CGGAGTAGCGTCTTTTCATTCT 58.487 45.455 0.00 0.00 0.00 2.40
224 225 3.927142 CGGAGTAGCGTCTTTTCATTCTT 59.073 43.478 0.00 0.00 0.00 2.52
225 226 4.389077 CGGAGTAGCGTCTTTTCATTCTTT 59.611 41.667 0.00 0.00 0.00 2.52
226 227 5.107065 CGGAGTAGCGTCTTTTCATTCTTTT 60.107 40.000 0.00 0.00 0.00 2.27
227 228 6.080406 GGAGTAGCGTCTTTTCATTCTTTTG 58.920 40.000 0.00 0.00 0.00 2.44
228 229 6.002062 AGTAGCGTCTTTTCATTCTTTTGG 57.998 37.500 0.00 0.00 0.00 3.28
229 230 3.642705 AGCGTCTTTTCATTCTTTTGGC 58.357 40.909 0.00 0.00 0.00 4.52
230 231 2.405025 GCGTCTTTTCATTCTTTTGGCG 59.595 45.455 0.00 0.00 0.00 5.69
231 232 2.405025 CGTCTTTTCATTCTTTTGGCGC 59.595 45.455 0.00 0.00 0.00 6.53
232 233 2.405025 GTCTTTTCATTCTTTTGGCGCG 59.595 45.455 0.00 0.00 0.00 6.86
233 234 2.034053 TCTTTTCATTCTTTTGGCGCGT 59.966 40.909 8.43 0.00 0.00 6.01
234 235 2.044888 TTTCATTCTTTTGGCGCGTC 57.955 45.000 2.29 2.29 0.00 5.19
235 236 0.110419 TTCATTCTTTTGGCGCGTCG 60.110 50.000 6.09 0.00 0.00 5.12
236 237 1.511887 CATTCTTTTGGCGCGTCGG 60.512 57.895 6.09 0.00 0.00 4.79
248 249 2.687436 CGTCGGCGTCGCTTTAAG 59.313 61.111 18.11 4.21 36.13 1.85
249 250 2.394524 GTCGGCGTCGCTTTAAGC 59.605 61.111 18.11 6.92 38.02 3.09
250 251 2.092882 GTCGGCGTCGCTTTAAGCT 61.093 57.895 18.11 0.00 39.60 3.74
251 252 0.799534 GTCGGCGTCGCTTTAAGCTA 60.800 55.000 18.11 0.59 39.60 3.32
252 253 0.799534 TCGGCGTCGCTTTAAGCTAC 60.800 55.000 18.11 13.01 39.60 3.58
253 254 1.749609 CGGCGTCGCTTTAAGCTACC 61.750 60.000 18.11 9.37 39.60 3.18
254 255 1.426816 GGCGTCGCTTTAAGCTACCC 61.427 60.000 18.11 12.83 39.60 3.69
255 256 0.738412 GCGTCGCTTTAAGCTACCCA 60.738 55.000 15.29 0.00 39.60 4.51
256 257 0.997196 CGTCGCTTTAAGCTACCCAC 59.003 55.000 15.29 3.18 39.60 4.61
257 258 0.997196 GTCGCTTTAAGCTACCCACG 59.003 55.000 15.29 0.00 39.60 4.94
258 259 0.738412 TCGCTTTAAGCTACCCACGC 60.738 55.000 15.29 0.00 39.60 5.34
259 260 1.702491 CGCTTTAAGCTACCCACGCC 61.702 60.000 15.29 0.00 39.60 5.68
260 261 1.702491 GCTTTAAGCTACCCACGCCG 61.702 60.000 10.01 0.00 38.45 6.46
261 262 0.390735 CTTTAAGCTACCCACGCCGT 60.391 55.000 0.00 0.00 0.00 5.68
262 263 0.390209 TTTAAGCTACCCACGCCGTC 60.390 55.000 0.00 0.00 0.00 4.79
263 264 2.546645 TTAAGCTACCCACGCCGTCG 62.547 60.000 0.00 0.00 42.43 5.12
286 287 3.349006 CGTGCTGTGCCGCTCTTT 61.349 61.111 0.00 0.00 0.00 2.52
287 288 2.896801 CGTGCTGTGCCGCTCTTTT 61.897 57.895 0.00 0.00 0.00 2.27
288 289 1.360192 GTGCTGTGCCGCTCTTTTT 59.640 52.632 0.00 0.00 0.00 1.94
304 305 0.467804 TTTTTGTTGCTTCCCTGCCC 59.532 50.000 0.00 0.00 0.00 5.36
305 306 0.398381 TTTTGTTGCTTCCCTGCCCT 60.398 50.000 0.00 0.00 0.00 5.19
306 307 1.114722 TTTGTTGCTTCCCTGCCCTG 61.115 55.000 0.00 0.00 0.00 4.45
307 308 3.376918 GTTGCTTCCCTGCCCTGC 61.377 66.667 0.00 0.00 0.00 4.85
308 309 4.684134 TTGCTTCCCTGCCCTGCC 62.684 66.667 0.00 0.00 0.00 4.85
325 326 4.542075 CCGGAAAGGGAAGCTAGC 57.458 61.111 6.62 6.62 35.97 3.42
326 327 1.908483 CCGGAAAGGGAAGCTAGCT 59.092 57.895 12.68 12.68 35.97 3.32
327 328 1.120530 CCGGAAAGGGAAGCTAGCTA 58.879 55.000 19.70 0.00 35.97 3.32
328 329 1.069358 CCGGAAAGGGAAGCTAGCTAG 59.931 57.143 19.70 16.84 35.97 3.42
329 330 4.746496 CCGGAAAGGGAAGCTAGCTAGC 62.746 59.091 33.96 33.96 42.30 3.42
364 365 4.120331 GCATCCAACGCCAGCCAC 62.120 66.667 0.00 0.00 0.00 5.01
365 366 2.672651 CATCCAACGCCAGCCACA 60.673 61.111 0.00 0.00 0.00 4.17
366 367 2.360350 ATCCAACGCCAGCCACAG 60.360 61.111 0.00 0.00 0.00 3.66
370 371 4.586235 AACGCCAGCCACAGCCTT 62.586 61.111 0.00 0.00 41.25 4.35
374 375 3.052082 CCAGCCACAGCCTTCGTG 61.052 66.667 0.00 0.00 41.25 4.35
381 382 0.517316 CACAGCCTTCGTGGTTAAGC 59.483 55.000 0.00 0.00 38.35 3.09
382 383 0.396811 ACAGCCTTCGTGGTTAAGCT 59.603 50.000 6.19 0.00 38.35 3.74
383 384 1.621814 ACAGCCTTCGTGGTTAAGCTA 59.378 47.619 6.19 0.00 38.35 3.32
384 385 2.271800 CAGCCTTCGTGGTTAAGCTAG 58.728 52.381 6.19 0.18 38.35 3.42
385 386 1.900486 AGCCTTCGTGGTTAAGCTAGT 59.100 47.619 6.19 0.00 38.35 2.57
386 387 2.000447 GCCTTCGTGGTTAAGCTAGTG 59.000 52.381 6.19 0.00 38.35 2.74
387 388 2.000447 CCTTCGTGGTTAAGCTAGTGC 59.000 52.381 6.19 0.00 40.05 4.40
398 399 2.743195 GCTAGTGCTCACAGGAACG 58.257 57.895 2.63 0.00 36.03 3.95
399 400 1.355066 GCTAGTGCTCACAGGAACGC 61.355 60.000 2.63 0.00 36.03 4.84
400 401 1.073216 CTAGTGCTCACAGGAACGCG 61.073 60.000 3.53 3.53 0.00 6.01
401 402 4.077188 GTGCTCACAGGAACGCGC 62.077 66.667 5.73 0.00 0.00 6.86
404 405 3.767230 CTCACAGGAACGCGCGTG 61.767 66.667 38.44 25.90 0.00 5.34
405 406 4.578898 TCACAGGAACGCGCGTGT 62.579 61.111 38.44 26.65 37.36 4.49
406 407 4.354212 CACAGGAACGCGCGTGTG 62.354 66.667 38.44 32.64 44.76 3.82
407 408 4.578898 ACAGGAACGCGCGTGTGA 62.579 61.111 38.44 0.00 35.75 3.58
408 409 3.112075 CAGGAACGCGCGTGTGAT 61.112 61.111 38.44 21.91 0.00 3.06
409 410 2.809601 AGGAACGCGCGTGTGATC 60.810 61.111 38.44 28.56 0.00 2.92
410 411 4.191485 GGAACGCGCGTGTGATCG 62.191 66.667 38.44 13.32 0.00 3.69
411 412 3.169924 GAACGCGCGTGTGATCGA 61.170 61.111 38.44 0.00 0.00 3.59
412 413 3.387915 GAACGCGCGTGTGATCGAC 62.388 63.158 38.44 15.66 0.00 4.20
416 417 4.178255 CGCGTGTGATCGACGTGC 62.178 66.667 15.13 8.72 40.11 5.34
417 418 4.178255 GCGTGTGATCGACGTGCG 62.178 66.667 15.95 0.00 39.08 5.34
418 419 3.532792 CGTGTGATCGACGTGCGG 61.533 66.667 0.00 0.00 41.33 5.69
419 420 3.838795 GTGTGATCGACGTGCGGC 61.839 66.667 0.00 0.00 41.33 6.53
420 421 4.050934 TGTGATCGACGTGCGGCT 62.051 61.111 0.00 0.00 41.33 5.52
421 422 3.545481 GTGATCGACGTGCGGCTG 61.545 66.667 0.00 0.00 41.33 4.85
422 423 4.050934 TGATCGACGTGCGGCTGT 62.051 61.111 0.00 0.00 41.33 4.40
423 424 3.545481 GATCGACGTGCGGCTGTG 61.545 66.667 0.00 0.00 41.33 3.66
436 437 3.849951 CTGTGGCTCGCCCCGTAT 61.850 66.667 5.33 0.00 34.56 3.06
437 438 4.155733 TGTGGCTCGCCCCGTATG 62.156 66.667 5.33 0.00 34.56 2.39
438 439 4.910585 GTGGCTCGCCCCGTATGG 62.911 72.222 5.33 0.00 34.56 2.74
460 461 4.036804 GCGCGGTGCCATTGTCAA 62.037 61.111 8.83 0.00 37.76 3.18
461 462 2.126888 CGCGGTGCCATTGTCAAC 60.127 61.111 0.00 0.00 0.00 3.18
462 463 2.126888 GCGGTGCCATTGTCAACG 60.127 61.111 0.00 0.00 46.43 4.10
463 464 2.903547 GCGGTGCCATTGTCAACGT 61.904 57.895 7.01 0.00 45.53 3.99
464 465 1.206578 CGGTGCCATTGTCAACGTC 59.793 57.895 0.00 0.00 39.57 4.34
465 466 1.227999 CGGTGCCATTGTCAACGTCT 61.228 55.000 0.00 0.00 39.57 4.18
466 467 0.238289 GGTGCCATTGTCAACGTCTG 59.762 55.000 0.00 0.00 0.00 3.51
467 468 0.944386 GTGCCATTGTCAACGTCTGT 59.056 50.000 0.00 0.00 0.00 3.41
468 469 1.069906 GTGCCATTGTCAACGTCTGTC 60.070 52.381 0.00 0.00 0.00 3.51
469 470 1.202639 TGCCATTGTCAACGTCTGTCT 60.203 47.619 0.00 0.00 0.00 3.41
470 471 1.873591 GCCATTGTCAACGTCTGTCTT 59.126 47.619 0.00 0.00 0.00 3.01
471 472 2.290641 GCCATTGTCAACGTCTGTCTTT 59.709 45.455 0.00 0.00 0.00 2.52
472 473 3.607078 GCCATTGTCAACGTCTGTCTTTC 60.607 47.826 0.00 0.00 0.00 2.62
473 474 3.058914 CCATTGTCAACGTCTGTCTTTCC 60.059 47.826 0.00 0.00 0.00 3.13
474 475 2.971660 TGTCAACGTCTGTCTTTCCA 57.028 45.000 0.00 0.00 0.00 3.53
475 476 3.469008 TGTCAACGTCTGTCTTTCCAT 57.531 42.857 0.00 0.00 0.00 3.41
476 477 3.130633 TGTCAACGTCTGTCTTTCCATG 58.869 45.455 0.00 0.00 0.00 3.66
477 478 2.480419 GTCAACGTCTGTCTTTCCATGG 59.520 50.000 4.97 4.97 0.00 3.66
478 479 2.367241 TCAACGTCTGTCTTTCCATGGA 59.633 45.455 11.44 11.44 0.00 3.41
479 480 3.007940 TCAACGTCTGTCTTTCCATGGAT 59.992 43.478 17.06 0.00 0.00 3.41
480 481 2.977914 ACGTCTGTCTTTCCATGGATG 58.022 47.619 17.06 11.96 0.00 3.51
498 499 3.157252 GGCTCAGCCGATCCAGGA 61.157 66.667 0.00 0.00 39.62 3.86
499 500 2.420890 GCTCAGCCGATCCAGGAG 59.579 66.667 0.00 0.00 0.00 3.69
500 501 2.130426 GCTCAGCCGATCCAGGAGA 61.130 63.158 0.00 0.00 0.00 3.71
501 502 1.739049 CTCAGCCGATCCAGGAGAC 59.261 63.158 0.00 0.00 0.00 3.36
502 503 2.069465 CTCAGCCGATCCAGGAGACG 62.069 65.000 10.74 10.74 0.00 4.18
503 504 2.835431 AGCCGATCCAGGAGACGG 60.835 66.667 25.10 25.10 46.74 4.79
504 505 2.833582 GCCGATCCAGGAGACGGA 60.834 66.667 30.43 3.94 46.94 4.69
505 506 3.121019 CCGATCCAGGAGACGGAC 58.879 66.667 25.17 0.64 46.94 4.79
506 507 2.716244 CGATCCAGGAGACGGACG 59.284 66.667 10.05 0.00 36.20 4.79
507 508 2.835705 CGATCCAGGAGACGGACGG 61.836 68.421 10.05 0.00 36.20 4.79
508 509 1.753463 GATCCAGGAGACGGACGGT 60.753 63.158 0.00 0.00 36.20 4.83
509 510 1.305046 ATCCAGGAGACGGACGGTT 60.305 57.895 0.00 0.00 36.20 4.44
510 511 1.605058 ATCCAGGAGACGGACGGTTG 61.605 60.000 0.00 0.00 36.20 3.77
511 512 2.261671 CAGGAGACGGACGGTTGG 59.738 66.667 0.00 0.00 0.00 3.77
512 513 2.203596 AGGAGACGGACGGTTGGT 60.204 61.111 0.00 0.00 0.00 3.67
513 514 1.835712 AGGAGACGGACGGTTGGTT 60.836 57.895 0.00 0.00 0.00 3.67
514 515 1.373873 GGAGACGGACGGTTGGTTC 60.374 63.158 0.00 0.00 0.00 3.62
515 516 1.364901 GAGACGGACGGTTGGTTCA 59.635 57.895 0.00 0.00 0.00 3.18
516 517 0.666577 GAGACGGACGGTTGGTTCAG 60.667 60.000 0.00 0.00 0.00 3.02
517 518 2.280592 ACGGACGGTTGGTTCAGC 60.281 61.111 0.00 0.00 0.00 4.26
518 519 3.411351 CGGACGGTTGGTTCAGCG 61.411 66.667 0.00 0.00 43.37 5.18
519 520 2.029964 GGACGGTTGGTTCAGCGA 59.970 61.111 0.00 0.00 40.13 4.93
520 521 2.027625 GGACGGTTGGTTCAGCGAG 61.028 63.158 0.00 0.00 40.13 5.03
521 522 2.665185 ACGGTTGGTTCAGCGAGC 60.665 61.111 0.00 0.00 40.13 5.03
522 523 2.357517 CGGTTGGTTCAGCGAGCT 60.358 61.111 0.00 0.00 40.13 4.09
523 524 1.080093 CGGTTGGTTCAGCGAGCTA 60.080 57.895 0.00 0.00 40.13 3.32
524 525 0.460284 CGGTTGGTTCAGCGAGCTAT 60.460 55.000 0.00 0.00 40.13 2.97
525 526 1.202371 CGGTTGGTTCAGCGAGCTATA 60.202 52.381 0.00 0.00 40.13 1.31
526 527 2.202566 GGTTGGTTCAGCGAGCTATAC 58.797 52.381 0.00 0.00 0.00 1.47
527 528 2.159085 GGTTGGTTCAGCGAGCTATACT 60.159 50.000 0.00 0.00 0.00 2.12
528 529 3.067742 GGTTGGTTCAGCGAGCTATACTA 59.932 47.826 0.00 0.00 0.00 1.82
529 530 4.291783 GTTGGTTCAGCGAGCTATACTAG 58.708 47.826 0.00 0.00 0.00 2.57
545 546 7.655236 CTATACTAGCTACGAGACTAAAGCA 57.345 40.000 0.00 0.00 37.44 3.91
546 547 6.939132 ATACTAGCTACGAGACTAAAGCAA 57.061 37.500 0.00 0.00 37.44 3.91
547 548 5.640189 ACTAGCTACGAGACTAAAGCAAA 57.360 39.130 0.00 0.00 37.44 3.68
548 549 5.400703 ACTAGCTACGAGACTAAAGCAAAC 58.599 41.667 0.00 0.00 37.44 2.93
549 550 4.252971 AGCTACGAGACTAAAGCAAACA 57.747 40.909 0.00 0.00 37.44 2.83
550 551 4.238514 AGCTACGAGACTAAAGCAAACAG 58.761 43.478 0.00 0.00 37.44 3.16
551 552 3.988517 GCTACGAGACTAAAGCAAACAGT 59.011 43.478 0.00 0.00 35.05 3.55
552 553 5.048224 AGCTACGAGACTAAAGCAAACAGTA 60.048 40.000 0.00 0.00 37.44 2.74
553 554 5.632347 GCTACGAGACTAAAGCAAACAGTAA 59.368 40.000 0.00 0.00 35.05 2.24
554 555 6.183359 GCTACGAGACTAAAGCAAACAGTAAG 60.183 42.308 0.00 0.00 35.05 2.34
555 556 5.598769 ACGAGACTAAAGCAAACAGTAAGT 58.401 37.500 0.00 0.00 0.00 2.24
556 557 5.462398 ACGAGACTAAAGCAAACAGTAAGTG 59.538 40.000 0.00 0.00 0.00 3.16
557 558 5.107453 CGAGACTAAAGCAAACAGTAAGTGG 60.107 44.000 0.00 0.00 0.00 4.00
558 559 5.063880 AGACTAAAGCAAACAGTAAGTGGG 58.936 41.667 0.00 0.00 0.00 4.61
559 560 4.142038 ACTAAAGCAAACAGTAAGTGGGG 58.858 43.478 0.00 0.00 0.00 4.96
560 561 1.328279 AAGCAAACAGTAAGTGGGGC 58.672 50.000 0.00 0.00 0.00 5.80
561 562 0.478507 AGCAAACAGTAAGTGGGGCT 59.521 50.000 0.00 0.00 0.00 5.19
562 563 0.598065 GCAAACAGTAAGTGGGGCTG 59.402 55.000 0.00 0.00 36.41 4.85
563 564 1.817740 GCAAACAGTAAGTGGGGCTGA 60.818 52.381 0.00 0.00 34.60 4.26
564 565 1.880027 CAAACAGTAAGTGGGGCTGAC 59.120 52.381 0.00 0.00 34.60 3.51
565 566 1.435256 AACAGTAAGTGGGGCTGACT 58.565 50.000 0.00 0.00 39.53 3.41
566 567 3.540211 CAGTAAGTGGGGCTGACTG 57.460 57.895 0.00 0.00 46.95 3.51
567 568 2.377136 AGTAAGTGGGGCTGACTGG 58.623 57.895 0.00 0.00 37.52 4.00
568 569 0.178903 AGTAAGTGGGGCTGACTGGA 60.179 55.000 0.00 0.00 37.52 3.86
569 570 0.250513 GTAAGTGGGGCTGACTGGAG 59.749 60.000 0.00 0.00 0.00 3.86
570 571 0.178903 TAAGTGGGGCTGACTGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
571 572 0.178903 AAGTGGGGCTGACTGGAGTA 60.179 55.000 0.00 0.00 0.00 2.59
572 573 0.178903 AGTGGGGCTGACTGGAGTAA 60.179 55.000 0.00 0.00 0.00 2.24
573 574 0.690762 GTGGGGCTGACTGGAGTAAA 59.309 55.000 0.00 0.00 0.00 2.01
574 575 1.073284 GTGGGGCTGACTGGAGTAAAA 59.927 52.381 0.00 0.00 0.00 1.52
575 576 1.777878 TGGGGCTGACTGGAGTAAAAA 59.222 47.619 0.00 0.00 0.00 1.94
596 597 7.743520 AAAAAGAAATTTTAACTTGTCGCGA 57.256 28.000 3.71 3.71 39.44 5.87
597 598 6.969669 AAAGAAATTTTAACTTGTCGCGAG 57.030 33.333 10.24 0.00 0.00 5.03
598 599 5.668558 AGAAATTTTAACTTGTCGCGAGT 57.331 34.783 10.24 0.00 0.00 4.18
599 600 6.056428 AGAAATTTTAACTTGTCGCGAGTT 57.944 33.333 10.24 13.54 40.68 3.01
600 601 6.134061 AGAAATTTTAACTTGTCGCGAGTTC 58.866 36.000 10.24 0.00 38.77 3.01
601 602 3.492725 TTTTAACTTGTCGCGAGTTCG 57.507 42.857 10.24 0.37 38.77 3.95
602 603 2.124011 TTAACTTGTCGCGAGTTCGT 57.876 45.000 10.24 1.12 38.77 3.85
609 610 4.692129 CGCGAGTTCGTGCTCTAT 57.308 55.556 0.00 0.00 43.06 1.98
610 611 2.945315 CGCGAGTTCGTGCTCTATT 58.055 52.632 0.00 0.00 43.06 1.73
611 612 1.269166 CGCGAGTTCGTGCTCTATTT 58.731 50.000 0.00 0.00 43.06 1.40
612 613 1.654105 CGCGAGTTCGTGCTCTATTTT 59.346 47.619 0.00 0.00 43.06 1.82
613 614 2.092211 CGCGAGTTCGTGCTCTATTTTT 59.908 45.455 0.00 0.00 43.06 1.94
765 766 1.142314 GCGACATTTGGCATGCCAT 59.858 52.632 38.78 25.02 46.64 4.40
1086 1166 1.920325 CTCAAGCCACCCTCTCCCA 60.920 63.158 0.00 0.00 0.00 4.37
1257 1337 1.067295 TGGGCTTTCCTGATGAGTGT 58.933 50.000 0.00 0.00 36.20 3.55
1442 1524 4.468868 TGCTCTGATGGATATGACTATGGG 59.531 45.833 0.00 0.00 0.00 4.00
2329 2504 3.556633 CCTGGGCACATGCAAATTAACAA 60.557 43.478 6.15 0.00 44.36 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.504398 TGAAAGTTAATCGAGATATGACGCT 58.496 36.000 0.00 0.00 0.00 5.07
1 2 6.637254 TCTGAAAGTTAATCGAGATATGACGC 59.363 38.462 0.00 0.00 33.76 5.19
2 3 8.070769 TCTCTGAAAGTTAATCGAGATATGACG 58.929 37.037 0.00 0.00 33.76 4.35
3 4 9.737427 TTCTCTGAAAGTTAATCGAGATATGAC 57.263 33.333 0.00 0.00 31.54 3.06
4 5 9.958234 CTTCTCTGAAAGTTAATCGAGATATGA 57.042 33.333 0.00 0.00 31.54 2.15
5 6 9.190858 CCTTCTCTGAAAGTTAATCGAGATATG 57.809 37.037 0.00 0.00 31.54 1.78
6 7 8.919145 ACCTTCTCTGAAAGTTAATCGAGATAT 58.081 33.333 0.00 0.00 31.54 1.63
7 8 8.294954 ACCTTCTCTGAAAGTTAATCGAGATA 57.705 34.615 0.00 0.00 31.54 1.98
8 9 7.176589 ACCTTCTCTGAAAGTTAATCGAGAT 57.823 36.000 0.00 0.00 31.54 2.75
9 10 6.591750 ACCTTCTCTGAAAGTTAATCGAGA 57.408 37.500 0.00 0.00 33.76 4.04
10 11 6.868864 TGAACCTTCTCTGAAAGTTAATCGAG 59.131 38.462 0.00 0.00 33.76 4.04
11 12 6.755206 TGAACCTTCTCTGAAAGTTAATCGA 58.245 36.000 0.00 0.00 33.76 3.59
12 13 7.421530 TTGAACCTTCTCTGAAAGTTAATCG 57.578 36.000 0.00 0.00 33.76 3.34
14 15 9.803315 GTTTTTGAACCTTCTCTGAAAGTTAAT 57.197 29.630 0.00 0.00 33.76 1.40
15 16 8.798402 TGTTTTTGAACCTTCTCTGAAAGTTAA 58.202 29.630 0.00 0.00 33.76 2.01
16 17 8.241367 GTGTTTTTGAACCTTCTCTGAAAGTTA 58.759 33.333 0.00 0.00 33.76 2.24
17 18 7.090808 GTGTTTTTGAACCTTCTCTGAAAGTT 58.909 34.615 0.00 0.00 33.76 2.66
18 19 6.621613 GTGTTTTTGAACCTTCTCTGAAAGT 58.378 36.000 0.00 0.00 33.76 2.66
19 20 5.739161 CGTGTTTTTGAACCTTCTCTGAAAG 59.261 40.000 0.00 0.00 0.00 2.62
20 21 5.392595 CCGTGTTTTTGAACCTTCTCTGAAA 60.393 40.000 0.00 0.00 0.00 2.69
21 22 4.095782 CCGTGTTTTTGAACCTTCTCTGAA 59.904 41.667 0.00 0.00 0.00 3.02
22 23 3.625764 CCGTGTTTTTGAACCTTCTCTGA 59.374 43.478 0.00 0.00 0.00 3.27
23 24 3.625764 TCCGTGTTTTTGAACCTTCTCTG 59.374 43.478 0.00 0.00 0.00 3.35
24 25 3.881220 TCCGTGTTTTTGAACCTTCTCT 58.119 40.909 0.00 0.00 0.00 3.10
25 26 4.625972 TTCCGTGTTTTTGAACCTTCTC 57.374 40.909 0.00 0.00 0.00 2.87
26 27 5.592104 AATTCCGTGTTTTTGAACCTTCT 57.408 34.783 0.00 0.00 0.00 2.85
27 28 6.474364 CAAAATTCCGTGTTTTTGAACCTTC 58.526 36.000 7.70 0.00 42.62 3.46
28 29 5.163804 GCAAAATTCCGTGTTTTTGAACCTT 60.164 36.000 14.42 0.00 42.62 3.50
29 30 4.331443 GCAAAATTCCGTGTTTTTGAACCT 59.669 37.500 14.42 0.00 42.62 3.50
30 31 4.495019 GGCAAAATTCCGTGTTTTTGAACC 60.495 41.667 14.42 6.52 42.62 3.62
31 32 4.583426 GGCAAAATTCCGTGTTTTTGAAC 58.417 39.130 14.42 6.03 42.62 3.18
32 33 3.307242 CGGCAAAATTCCGTGTTTTTGAA 59.693 39.130 14.42 0.00 42.62 2.69
33 34 2.860735 CGGCAAAATTCCGTGTTTTTGA 59.139 40.909 14.42 0.00 42.62 2.69
34 35 3.231734 CGGCAAAATTCCGTGTTTTTG 57.768 42.857 8.66 8.66 42.79 2.44
43 44 2.202427 CCGTCGCGGCAAAATTCC 60.202 61.111 12.89 0.00 41.17 3.01
60 61 2.887568 CATCTCACGGCTGGTCGC 60.888 66.667 0.00 0.00 38.13 5.19
61 62 1.226802 CTCATCTCACGGCTGGTCG 60.227 63.158 0.00 0.00 0.00 4.79
62 63 0.532573 TTCTCATCTCACGGCTGGTC 59.467 55.000 0.00 0.00 0.00 4.02
63 64 0.976641 TTTCTCATCTCACGGCTGGT 59.023 50.000 0.00 0.00 0.00 4.00
64 65 1.363744 GTTTCTCATCTCACGGCTGG 58.636 55.000 0.00 0.00 0.00 4.85
65 66 0.994995 CGTTTCTCATCTCACGGCTG 59.005 55.000 0.00 0.00 0.00 4.85
66 67 0.888619 TCGTTTCTCATCTCACGGCT 59.111 50.000 0.00 0.00 33.39 5.52
67 68 1.710013 TTCGTTTCTCATCTCACGGC 58.290 50.000 0.00 0.00 33.39 5.68
68 69 3.318017 ACTTTCGTTTCTCATCTCACGG 58.682 45.455 0.00 0.00 33.39 4.94
69 70 4.444388 TGAACTTTCGTTTCTCATCTCACG 59.556 41.667 0.00 0.00 32.39 4.35
70 71 5.692204 TCTGAACTTTCGTTTCTCATCTCAC 59.308 40.000 0.00 0.00 32.39 3.51
71 72 5.842907 TCTGAACTTTCGTTTCTCATCTCA 58.157 37.500 0.00 0.00 32.39 3.27
72 73 5.347364 CCTCTGAACTTTCGTTTCTCATCTC 59.653 44.000 0.00 0.00 32.39 2.75
73 74 5.221541 ACCTCTGAACTTTCGTTTCTCATCT 60.222 40.000 0.00 0.00 32.39 2.90
74 75 4.991687 ACCTCTGAACTTTCGTTTCTCATC 59.008 41.667 0.00 0.00 32.39 2.92
75 76 4.752101 CACCTCTGAACTTTCGTTTCTCAT 59.248 41.667 0.00 0.00 32.39 2.90
76 77 4.119862 CACCTCTGAACTTTCGTTTCTCA 58.880 43.478 0.00 0.00 32.39 3.27
77 78 4.209495 GTCACCTCTGAACTTTCGTTTCTC 59.791 45.833 0.00 0.00 32.39 2.87
78 79 4.120589 GTCACCTCTGAACTTTCGTTTCT 58.879 43.478 0.00 0.00 32.39 2.52
79 80 3.869246 TGTCACCTCTGAACTTTCGTTTC 59.131 43.478 0.00 0.00 32.39 2.78
80 81 3.869065 TGTCACCTCTGAACTTTCGTTT 58.131 40.909 0.00 0.00 32.39 3.60
81 82 3.536956 TGTCACCTCTGAACTTTCGTT 57.463 42.857 0.00 0.00 35.68 3.85
82 83 3.069586 TGATGTCACCTCTGAACTTTCGT 59.930 43.478 0.00 0.00 0.00 3.85
83 84 3.430218 GTGATGTCACCTCTGAACTTTCG 59.570 47.826 1.68 0.00 40.85 3.46
84 85 3.430218 CGTGATGTCACCTCTGAACTTTC 59.570 47.826 7.51 0.00 43.66 2.62
85 86 3.181465 ACGTGATGTCACCTCTGAACTTT 60.181 43.478 7.51 0.00 43.66 2.66
86 87 2.365617 ACGTGATGTCACCTCTGAACTT 59.634 45.455 7.51 0.00 43.66 2.66
87 88 1.964223 ACGTGATGTCACCTCTGAACT 59.036 47.619 7.51 0.00 43.66 3.01
88 89 2.440539 ACGTGATGTCACCTCTGAAC 57.559 50.000 7.51 0.00 43.66 3.18
98 99 2.194271 GGATCTTTCCGACGTGATGTC 58.806 52.381 0.00 0.00 44.53 3.06
99 100 2.295253 GGATCTTTCCGACGTGATGT 57.705 50.000 0.00 0.00 30.72 3.06
109 110 0.181350 ATCTGTGGCCGGATCTTTCC 59.819 55.000 5.05 0.00 38.81 3.13
110 111 2.044123 AATCTGTGGCCGGATCTTTC 57.956 50.000 5.05 0.00 35.57 2.62
111 112 2.290896 TGAAATCTGTGGCCGGATCTTT 60.291 45.455 5.05 0.00 35.57 2.52
112 113 1.281867 TGAAATCTGTGGCCGGATCTT 59.718 47.619 5.05 0.24 35.57 2.40
113 114 0.911769 TGAAATCTGTGGCCGGATCT 59.088 50.000 5.05 0.00 35.57 2.75
114 115 1.750193 TTGAAATCTGTGGCCGGATC 58.250 50.000 5.05 0.00 35.57 3.36
115 116 2.094675 CTTTGAAATCTGTGGCCGGAT 58.905 47.619 5.05 0.00 38.37 4.18
116 117 1.533625 CTTTGAAATCTGTGGCCGGA 58.466 50.000 5.05 0.00 0.00 5.14
117 118 0.109132 GCTTTGAAATCTGTGGCCGG 60.109 55.000 0.00 0.00 0.00 6.13
118 119 0.454957 CGCTTTGAAATCTGTGGCCG 60.455 55.000 0.00 0.00 0.00 6.13
119 120 0.733909 GCGCTTTGAAATCTGTGGCC 60.734 55.000 0.00 0.00 0.00 5.36
120 121 1.067199 CGCGCTTTGAAATCTGTGGC 61.067 55.000 5.56 0.00 0.00 5.01
121 122 1.067199 GCGCGCTTTGAAATCTGTGG 61.067 55.000 26.67 0.00 0.00 4.17
122 123 1.390664 CGCGCGCTTTGAAATCTGTG 61.391 55.000 30.48 4.24 0.00 3.66
123 124 1.154413 CGCGCGCTTTGAAATCTGT 60.154 52.632 30.48 0.00 0.00 3.41
124 125 1.122419 GACGCGCGCTTTGAAATCTG 61.122 55.000 32.58 11.74 0.00 2.90
125 126 1.132640 GACGCGCGCTTTGAAATCT 59.867 52.632 32.58 5.66 0.00 2.40
126 127 1.863446 GGACGCGCGCTTTGAAATC 60.863 57.895 32.58 17.11 0.00 2.17
127 128 2.175811 GGACGCGCGCTTTGAAAT 59.824 55.556 32.58 7.51 0.00 2.17
128 129 4.362946 CGGACGCGCGCTTTGAAA 62.363 61.111 32.58 0.00 0.00 2.69
132 133 4.501714 TATCCGGACGCGCGCTTT 62.502 61.111 32.58 16.38 0.00 3.51
172 173 4.691820 CTAGCTAGCTCGCCCGCG 62.692 72.222 23.26 0.00 41.35 6.46
182 183 2.614481 CGGAGGAGGAGTAGCTAGCTAG 60.614 59.091 24.78 16.84 0.00 3.42
183 184 1.348366 CGGAGGAGGAGTAGCTAGCTA 59.652 57.143 20.67 20.67 0.00 3.32
184 185 0.109723 CGGAGGAGGAGTAGCTAGCT 59.890 60.000 23.12 23.12 0.00 3.32
185 186 2.636299 CGGAGGAGGAGTAGCTAGC 58.364 63.158 6.62 6.62 0.00 3.42
199 200 1.201647 TGAAAAGACGCTACTCCGGAG 59.798 52.381 30.11 30.11 0.00 4.63
200 201 1.250328 TGAAAAGACGCTACTCCGGA 58.750 50.000 2.93 2.93 0.00 5.14
201 202 2.295253 ATGAAAAGACGCTACTCCGG 57.705 50.000 0.00 0.00 0.00 5.14
202 203 3.512680 AGAATGAAAAGACGCTACTCCG 58.487 45.455 0.00 0.00 0.00 4.63
203 204 5.864628 AAAGAATGAAAAGACGCTACTCC 57.135 39.130 0.00 0.00 0.00 3.85
204 205 6.080406 CCAAAAGAATGAAAAGACGCTACTC 58.920 40.000 0.00 0.00 0.00 2.59
205 206 5.562890 GCCAAAAGAATGAAAAGACGCTACT 60.563 40.000 0.00 0.00 0.00 2.57
206 207 4.617223 GCCAAAAGAATGAAAAGACGCTAC 59.383 41.667 0.00 0.00 0.00 3.58
207 208 4.612712 CGCCAAAAGAATGAAAAGACGCTA 60.613 41.667 0.00 0.00 0.00 4.26
208 209 3.642705 GCCAAAAGAATGAAAAGACGCT 58.357 40.909 0.00 0.00 0.00 5.07
209 210 2.405025 CGCCAAAAGAATGAAAAGACGC 59.595 45.455 0.00 0.00 0.00 5.19
210 211 2.405025 GCGCCAAAAGAATGAAAAGACG 59.595 45.455 0.00 0.00 0.00 4.18
211 212 2.405025 CGCGCCAAAAGAATGAAAAGAC 59.595 45.455 0.00 0.00 0.00 3.01
212 213 2.034053 ACGCGCCAAAAGAATGAAAAGA 59.966 40.909 5.73 0.00 0.00 2.52
213 214 2.393764 ACGCGCCAAAAGAATGAAAAG 58.606 42.857 5.73 0.00 0.00 2.27
214 215 2.389998 GACGCGCCAAAAGAATGAAAA 58.610 42.857 5.73 0.00 0.00 2.29
215 216 1.661743 CGACGCGCCAAAAGAATGAAA 60.662 47.619 5.73 0.00 0.00 2.69
216 217 0.110419 CGACGCGCCAAAAGAATGAA 60.110 50.000 5.73 0.00 0.00 2.57
217 218 1.495509 CGACGCGCCAAAAGAATGA 59.504 52.632 5.73 0.00 0.00 2.57
218 219 1.511887 CCGACGCGCCAAAAGAATG 60.512 57.895 5.73 0.00 0.00 2.67
219 220 2.867472 CCGACGCGCCAAAAGAAT 59.133 55.556 5.73 0.00 0.00 2.40
220 221 4.020378 GCCGACGCGCCAAAAGAA 62.020 61.111 5.73 0.00 0.00 2.52
232 233 2.394524 GCTTAAAGCGACGCCGAC 59.605 61.111 17.79 0.00 38.22 4.79
234 235 1.749609 GGTAGCTTAAAGCGACGCCG 61.750 60.000 17.79 1.24 45.92 6.46
235 236 2.004445 GGTAGCTTAAAGCGACGCC 58.996 57.895 17.79 0.00 45.92 5.68
237 238 0.997196 GTGGGTAGCTTAAAGCGACG 59.003 55.000 0.00 0.00 45.92 5.12
241 242 1.702491 CGGCGTGGGTAGCTTAAAGC 61.702 60.000 0.00 0.00 42.84 3.51
242 243 0.390735 ACGGCGTGGGTAGCTTAAAG 60.391 55.000 13.76 0.00 34.52 1.85
243 244 0.390209 GACGGCGTGGGTAGCTTAAA 60.390 55.000 21.19 0.00 34.52 1.52
244 245 1.216178 GACGGCGTGGGTAGCTTAA 59.784 57.895 21.19 0.00 34.52 1.85
245 246 2.887360 GACGGCGTGGGTAGCTTA 59.113 61.111 21.19 0.00 34.52 3.09
246 247 4.430765 CGACGGCGTGGGTAGCTT 62.431 66.667 21.19 0.00 34.52 3.74
269 270 2.392613 AAAAAGAGCGGCACAGCACG 62.393 55.000 1.45 0.00 40.15 5.34
270 271 1.360192 AAAAAGAGCGGCACAGCAC 59.640 52.632 1.45 0.00 40.15 4.40
271 272 3.840437 AAAAAGAGCGGCACAGCA 58.160 50.000 1.45 0.00 40.15 4.41
285 286 0.467804 GGGCAGGGAAGCAACAAAAA 59.532 50.000 0.00 0.00 35.83 1.94
286 287 0.398381 AGGGCAGGGAAGCAACAAAA 60.398 50.000 0.00 0.00 35.83 2.44
287 288 1.114722 CAGGGCAGGGAAGCAACAAA 61.115 55.000 0.00 0.00 35.83 2.83
288 289 1.531365 CAGGGCAGGGAAGCAACAA 60.531 57.895 0.00 0.00 35.83 2.83
289 290 2.115910 CAGGGCAGGGAAGCAACA 59.884 61.111 0.00 0.00 35.83 3.33
290 291 3.376918 GCAGGGCAGGGAAGCAAC 61.377 66.667 0.00 0.00 35.83 4.17
291 292 4.684134 GGCAGGGCAGGGAAGCAA 62.684 66.667 0.00 0.00 35.83 3.91
308 309 1.069358 CTAGCTAGCTTCCCTTTCCGG 59.931 57.143 24.88 0.00 0.00 5.14
309 310 1.539280 GCTAGCTAGCTTCCCTTTCCG 60.539 57.143 33.71 1.00 45.62 4.30
310 311 2.248280 GCTAGCTAGCTTCCCTTTCC 57.752 55.000 33.71 5.30 45.62 3.13
347 348 4.120331 GTGGCTGGCGTTGGATGC 62.120 66.667 0.00 0.00 0.00 3.91
348 349 2.672651 TGTGGCTGGCGTTGGATG 60.673 61.111 0.00 0.00 0.00 3.51
349 350 2.360350 CTGTGGCTGGCGTTGGAT 60.360 61.111 0.00 0.00 0.00 3.41
353 354 4.586235 AAGGCTGTGGCTGGCGTT 62.586 61.111 0.00 0.00 38.81 4.84
357 358 3.052082 CACGAAGGCTGTGGCTGG 61.052 66.667 0.00 0.00 38.81 4.85
362 363 0.517316 GCTTAACCACGAAGGCTGTG 59.483 55.000 0.00 0.00 43.14 3.66
363 364 0.396811 AGCTTAACCACGAAGGCTGT 59.603 50.000 0.00 0.00 43.14 4.40
364 365 2.271800 CTAGCTTAACCACGAAGGCTG 58.728 52.381 0.00 0.00 43.14 4.85
365 366 1.900486 ACTAGCTTAACCACGAAGGCT 59.100 47.619 0.00 0.00 43.14 4.58
366 367 2.000447 CACTAGCTTAACCACGAAGGC 59.000 52.381 0.00 0.00 43.14 4.35
367 368 2.000447 GCACTAGCTTAACCACGAAGG 59.000 52.381 0.00 0.00 39.94 3.46
380 381 1.355066 GCGTTCCTGTGAGCACTAGC 61.355 60.000 1.99 0.00 42.56 3.42
381 382 1.073216 CGCGTTCCTGTGAGCACTAG 61.073 60.000 0.00 0.00 0.00 2.57
382 383 1.080772 CGCGTTCCTGTGAGCACTA 60.081 57.895 0.00 0.00 0.00 2.74
383 384 2.356313 CGCGTTCCTGTGAGCACT 60.356 61.111 0.00 0.00 0.00 4.40
384 385 4.077188 GCGCGTTCCTGTGAGCAC 62.077 66.667 8.43 0.00 0.00 4.40
387 388 3.767230 CACGCGCGTTCCTGTGAG 61.767 66.667 35.90 16.02 34.29 3.51
388 389 4.578898 ACACGCGCGTTCCTGTGA 62.579 61.111 35.90 0.00 36.25 3.58
389 390 4.354212 CACACGCGCGTTCCTGTG 62.354 66.667 35.90 31.54 38.28 3.66
390 391 3.858868 ATCACACGCGCGTTCCTGT 62.859 57.895 35.90 25.29 0.00 4.00
391 392 3.071459 GATCACACGCGCGTTCCTG 62.071 63.158 35.90 26.64 0.00 3.86
392 393 2.809601 GATCACACGCGCGTTCCT 60.810 61.111 35.90 18.30 0.00 3.36
393 394 4.191485 CGATCACACGCGCGTTCC 62.191 66.667 35.90 18.45 0.00 3.62
394 395 3.169924 TCGATCACACGCGCGTTC 61.170 61.111 35.90 26.49 0.00 3.95
395 396 3.467119 GTCGATCACACGCGCGTT 61.467 61.111 35.90 20.26 0.00 4.84
398 399 4.178255 CACGTCGATCACACGCGC 62.178 66.667 5.73 0.00 41.10 6.86
399 400 4.178255 GCACGTCGATCACACGCG 62.178 66.667 3.53 3.53 41.10 6.01
400 401 4.178255 CGCACGTCGATCACACGC 62.178 66.667 12.86 5.40 41.10 5.34
401 402 3.532792 CCGCACGTCGATCACACG 61.533 66.667 11.65 11.65 43.13 4.49
402 403 3.838795 GCCGCACGTCGATCACAC 61.839 66.667 0.00 0.00 41.67 3.82
403 404 4.050934 AGCCGCACGTCGATCACA 62.051 61.111 0.00 0.00 41.67 3.58
404 405 3.545481 CAGCCGCACGTCGATCAC 61.545 66.667 0.00 0.00 41.67 3.06
405 406 4.050934 ACAGCCGCACGTCGATCA 62.051 61.111 0.00 0.00 41.67 2.92
406 407 3.545481 CACAGCCGCACGTCGATC 61.545 66.667 0.00 0.00 41.67 3.69
419 420 3.849951 ATACGGGGCGAGCCACAG 61.850 66.667 17.33 11.39 40.17 3.66
420 421 4.155733 CATACGGGGCGAGCCACA 62.156 66.667 17.33 0.00 40.17 4.17
421 422 4.910585 CCATACGGGGCGAGCCAC 62.911 72.222 16.65 11.83 37.98 5.01
443 444 4.036804 TTGACAATGGCACCGCGC 62.037 61.111 0.00 0.00 41.28 6.86
444 445 2.126888 GTTGACAATGGCACCGCG 60.127 61.111 0.00 0.00 0.00 6.46
445 446 2.126888 CGTTGACAATGGCACCGC 60.127 61.111 0.00 0.00 0.00 5.68
446 447 1.206578 GACGTTGACAATGGCACCG 59.793 57.895 4.02 4.02 0.00 4.94
447 448 0.238289 CAGACGTTGACAATGGCACC 59.762 55.000 15.64 0.57 0.00 5.01
448 449 0.944386 ACAGACGTTGACAATGGCAC 59.056 50.000 15.64 5.00 0.00 5.01
449 450 1.202639 AGACAGACGTTGACAATGGCA 60.203 47.619 15.64 0.00 0.00 4.92
450 451 1.512926 AGACAGACGTTGACAATGGC 58.487 50.000 11.97 8.77 0.00 4.40
451 452 3.058914 GGAAAGACAGACGTTGACAATGG 60.059 47.826 11.97 0.41 0.00 3.16
452 453 3.559655 TGGAAAGACAGACGTTGACAATG 59.440 43.478 5.83 5.83 0.00 2.82
453 454 3.804036 TGGAAAGACAGACGTTGACAAT 58.196 40.909 0.00 0.00 0.00 2.71
454 455 3.254470 TGGAAAGACAGACGTTGACAA 57.746 42.857 0.00 0.00 0.00 3.18
455 456 2.971660 TGGAAAGACAGACGTTGACA 57.028 45.000 0.00 0.00 0.00 3.58
456 457 2.480419 CCATGGAAAGACAGACGTTGAC 59.520 50.000 5.56 0.00 0.00 3.18
457 458 2.367241 TCCATGGAAAGACAGACGTTGA 59.633 45.455 13.46 0.00 0.00 3.18
458 459 2.766313 TCCATGGAAAGACAGACGTTG 58.234 47.619 13.46 0.00 0.00 4.10
459 460 3.338249 CATCCATGGAAAGACAGACGTT 58.662 45.455 20.67 0.00 0.00 3.99
460 461 2.977914 CATCCATGGAAAGACAGACGT 58.022 47.619 20.67 0.00 0.00 4.34
472 473 2.203451 GGCTGAGCCCATCCATGG 60.203 66.667 13.77 4.97 44.06 3.66
482 483 2.130426 TCTCCTGGATCGGCTGAGC 61.130 63.158 0.98 0.98 0.00 4.26
483 484 1.739049 GTCTCCTGGATCGGCTGAG 59.261 63.158 0.00 0.00 0.00 3.35
484 485 2.121538 CGTCTCCTGGATCGGCTGA 61.122 63.158 0.00 0.00 0.00 4.26
485 486 2.415010 CGTCTCCTGGATCGGCTG 59.585 66.667 0.00 0.00 0.00 4.85
486 487 2.835431 CCGTCTCCTGGATCGGCT 60.835 66.667 21.27 0.00 34.11 5.52
487 488 2.833582 TCCGTCTCCTGGATCGGC 60.834 66.667 25.42 6.55 37.99 5.54
488 489 2.835705 CGTCCGTCTCCTGGATCGG 61.836 68.421 24.73 24.73 37.93 4.18
489 490 2.716244 CGTCCGTCTCCTGGATCG 59.284 66.667 12.38 12.38 37.93 3.69
490 491 1.321074 AACCGTCCGTCTCCTGGATC 61.321 60.000 0.00 0.00 37.93 3.36
491 492 1.305046 AACCGTCCGTCTCCTGGAT 60.305 57.895 0.00 0.00 37.93 3.41
492 493 2.116772 AACCGTCCGTCTCCTGGA 59.883 61.111 0.00 0.00 0.00 3.86
493 494 2.261671 CAACCGTCCGTCTCCTGG 59.738 66.667 0.00 0.00 0.00 4.45
494 495 2.095978 AACCAACCGTCCGTCTCCTG 62.096 60.000 0.00 0.00 0.00 3.86
495 496 1.813728 GAACCAACCGTCCGTCTCCT 61.814 60.000 0.00 0.00 0.00 3.69
496 497 1.373873 GAACCAACCGTCCGTCTCC 60.374 63.158 0.00 0.00 0.00 3.71
497 498 0.666577 CTGAACCAACCGTCCGTCTC 60.667 60.000 0.00 0.00 0.00 3.36
498 499 1.366366 CTGAACCAACCGTCCGTCT 59.634 57.895 0.00 0.00 0.00 4.18
499 500 2.315386 GCTGAACCAACCGTCCGTC 61.315 63.158 0.00 0.00 0.00 4.79
500 501 2.280592 GCTGAACCAACCGTCCGT 60.281 61.111 0.00 0.00 0.00 4.69
501 502 3.411351 CGCTGAACCAACCGTCCG 61.411 66.667 0.00 0.00 0.00 4.79
502 503 2.027625 CTCGCTGAACCAACCGTCC 61.028 63.158 0.00 0.00 0.00 4.79
503 504 2.668280 GCTCGCTGAACCAACCGTC 61.668 63.158 0.00 0.00 0.00 4.79
504 505 1.812686 TAGCTCGCTGAACCAACCGT 61.813 55.000 0.85 0.00 0.00 4.83
505 506 0.460284 ATAGCTCGCTGAACCAACCG 60.460 55.000 0.85 0.00 0.00 4.44
506 507 2.159085 AGTATAGCTCGCTGAACCAACC 60.159 50.000 0.85 0.00 0.00 3.77
507 508 3.166489 AGTATAGCTCGCTGAACCAAC 57.834 47.619 0.85 0.00 0.00 3.77
508 509 4.569761 CTAGTATAGCTCGCTGAACCAA 57.430 45.455 0.85 0.00 0.00 3.67
521 522 7.655236 TGCTTTAGTCTCGTAGCTAGTATAG 57.345 40.000 0.00 0.00 43.09 1.31
522 523 8.341173 GTTTGCTTTAGTCTCGTAGCTAGTATA 58.659 37.037 0.00 0.00 34.77 1.47
523 524 6.939132 TTGCTTTAGTCTCGTAGCTAGTAT 57.061 37.500 0.00 0.00 34.77 2.12
524 525 6.149973 TGTTTGCTTTAGTCTCGTAGCTAGTA 59.850 38.462 0.00 0.00 34.77 1.82
525 526 5.048224 TGTTTGCTTTAGTCTCGTAGCTAGT 60.048 40.000 0.00 0.00 34.77 2.57
526 527 5.399858 TGTTTGCTTTAGTCTCGTAGCTAG 58.600 41.667 0.00 0.00 34.77 3.42
527 528 5.048224 ACTGTTTGCTTTAGTCTCGTAGCTA 60.048 40.000 0.00 0.00 34.77 3.32
528 529 4.238514 CTGTTTGCTTTAGTCTCGTAGCT 58.761 43.478 0.00 0.00 34.77 3.32
529 530 3.988517 ACTGTTTGCTTTAGTCTCGTAGC 59.011 43.478 0.00 0.00 0.00 3.58
530 531 6.862090 ACTTACTGTTTGCTTTAGTCTCGTAG 59.138 38.462 0.00 0.00 0.00 3.51
531 532 6.639686 CACTTACTGTTTGCTTTAGTCTCGTA 59.360 38.462 0.00 0.00 0.00 3.43
532 533 5.462398 CACTTACTGTTTGCTTTAGTCTCGT 59.538 40.000 0.00 0.00 0.00 4.18
533 534 5.107453 CCACTTACTGTTTGCTTTAGTCTCG 60.107 44.000 0.00 0.00 0.00 4.04
534 535 5.179555 CCCACTTACTGTTTGCTTTAGTCTC 59.820 44.000 0.00 0.00 0.00 3.36
535 536 5.063880 CCCACTTACTGTTTGCTTTAGTCT 58.936 41.667 0.00 0.00 0.00 3.24
536 537 4.215613 CCCCACTTACTGTTTGCTTTAGTC 59.784 45.833 0.00 0.00 0.00 2.59
537 538 4.142038 CCCCACTTACTGTTTGCTTTAGT 58.858 43.478 0.00 0.00 0.00 2.24
538 539 3.057526 GCCCCACTTACTGTTTGCTTTAG 60.058 47.826 0.00 0.00 0.00 1.85
539 540 2.888414 GCCCCACTTACTGTTTGCTTTA 59.112 45.455 0.00 0.00 0.00 1.85
540 541 1.686587 GCCCCACTTACTGTTTGCTTT 59.313 47.619 0.00 0.00 0.00 3.51
541 542 1.133482 AGCCCCACTTACTGTTTGCTT 60.133 47.619 0.00 0.00 0.00 3.91
542 543 0.478507 AGCCCCACTTACTGTTTGCT 59.521 50.000 0.00 0.00 0.00 3.91
543 544 0.598065 CAGCCCCACTTACTGTTTGC 59.402 55.000 0.00 0.00 0.00 3.68
544 545 1.880027 GTCAGCCCCACTTACTGTTTG 59.120 52.381 0.00 0.00 33.12 2.93
545 546 1.774856 AGTCAGCCCCACTTACTGTTT 59.225 47.619 0.00 0.00 31.46 2.83
546 547 1.072331 CAGTCAGCCCCACTTACTGTT 59.928 52.381 0.00 0.00 43.03 3.16
547 548 0.687354 CAGTCAGCCCCACTTACTGT 59.313 55.000 0.00 0.00 43.03 3.55
548 549 0.036010 CCAGTCAGCCCCACTTACTG 60.036 60.000 0.00 0.00 46.14 2.74
549 550 0.178903 TCCAGTCAGCCCCACTTACT 60.179 55.000 0.00 0.00 32.90 2.24
550 551 0.250513 CTCCAGTCAGCCCCACTTAC 59.749 60.000 0.00 0.00 0.00 2.34
551 552 0.178903 ACTCCAGTCAGCCCCACTTA 60.179 55.000 0.00 0.00 0.00 2.24
552 553 0.178903 TACTCCAGTCAGCCCCACTT 60.179 55.000 0.00 0.00 0.00 3.16
553 554 0.178903 TTACTCCAGTCAGCCCCACT 60.179 55.000 0.00 0.00 0.00 4.00
554 555 0.690762 TTTACTCCAGTCAGCCCCAC 59.309 55.000 0.00 0.00 0.00 4.61
555 556 1.440618 TTTTACTCCAGTCAGCCCCA 58.559 50.000 0.00 0.00 0.00 4.96
556 557 2.579410 TTTTTACTCCAGTCAGCCCC 57.421 50.000 0.00 0.00 0.00 5.80
572 573 7.486870 ACTCGCGACAAGTTAAAATTTCTTTTT 59.513 29.630 3.71 0.00 40.59 1.94
573 574 6.970613 ACTCGCGACAAGTTAAAATTTCTTTT 59.029 30.769 3.71 0.00 38.17 2.27
574 575 6.492254 ACTCGCGACAAGTTAAAATTTCTTT 58.508 32.000 3.71 0.00 0.00 2.52
575 576 6.056428 ACTCGCGACAAGTTAAAATTTCTT 57.944 33.333 3.71 0.00 0.00 2.52
576 577 5.668558 ACTCGCGACAAGTTAAAATTTCT 57.331 34.783 3.71 0.00 0.00 2.52
577 578 5.056449 CGAACTCGCGACAAGTTAAAATTTC 59.944 40.000 3.71 0.00 37.10 2.17
578 579 4.901881 CGAACTCGCGACAAGTTAAAATTT 59.098 37.500 3.71 0.00 37.10 1.82
579 580 4.025480 ACGAACTCGCGACAAGTTAAAATT 60.025 37.500 3.71 0.00 44.43 1.82
580 581 3.492011 ACGAACTCGCGACAAGTTAAAAT 59.508 39.130 3.71 0.00 44.43 1.82
581 582 2.859538 ACGAACTCGCGACAAGTTAAAA 59.140 40.909 3.71 0.00 44.43 1.52
582 583 2.216940 CACGAACTCGCGACAAGTTAAA 59.783 45.455 3.71 0.00 44.43 1.52
583 584 1.782569 CACGAACTCGCGACAAGTTAA 59.217 47.619 3.71 0.00 44.43 2.01
584 585 1.401530 CACGAACTCGCGACAAGTTA 58.598 50.000 3.71 0.00 44.43 2.24
585 586 1.818221 GCACGAACTCGCGACAAGTT 61.818 55.000 3.71 8.57 44.43 2.66
586 587 2.300787 GCACGAACTCGCGACAAGT 61.301 57.895 3.71 0.00 44.43 3.16
587 588 1.935065 GAGCACGAACTCGCGACAAG 61.935 60.000 3.71 0.00 44.43 3.16
588 589 2.014554 GAGCACGAACTCGCGACAA 61.015 57.895 3.71 0.00 44.43 3.18
589 590 1.571215 TAGAGCACGAACTCGCGACA 61.571 55.000 3.71 0.00 44.43 4.35
590 591 0.248134 ATAGAGCACGAACTCGCGAC 60.248 55.000 3.71 0.00 44.43 5.19
591 592 0.450583 AATAGAGCACGAACTCGCGA 59.549 50.000 9.26 9.26 44.43 5.87
592 593 1.269166 AAATAGAGCACGAACTCGCG 58.731 50.000 0.00 0.00 44.43 5.87
593 594 3.724295 AAAAATAGAGCACGAACTCGC 57.276 42.857 0.00 0.00 44.43 5.03
765 766 2.638354 CGCAGGCCAAAATCCAGCA 61.638 57.895 5.01 0.00 36.08 4.41
1105 1185 4.735132 CGTCATGTCGGCACCGGT 62.735 66.667 0.00 0.00 40.25 5.28
1257 1337 5.706833 TCAAATGTTAGCATCAGAAAGCTCA 59.293 36.000 4.13 0.00 42.05 4.26
1442 1524 4.434330 CGAGGACAAACAAGAAATCTACGC 60.434 45.833 0.00 0.00 0.00 4.42
1632 1727 1.474077 GTTTGCCAATCACCTGCCTAG 59.526 52.381 0.00 0.00 0.00 3.02
1633 1728 1.075374 AGTTTGCCAATCACCTGCCTA 59.925 47.619 0.00 0.00 0.00 3.93
1634 1729 0.178953 AGTTTGCCAATCACCTGCCT 60.179 50.000 0.00 0.00 0.00 4.75
1635 1730 0.681175 AAGTTTGCCAATCACCTGCC 59.319 50.000 0.00 0.00 0.00 4.85
1636 1731 1.787012 CAAGTTTGCCAATCACCTGC 58.213 50.000 0.00 0.00 0.00 4.85
2246 2421 9.988815 CTAAAATAGAATGTACTAGGTGCTCAT 57.011 33.333 0.00 0.00 0.00 2.90
2329 2504 2.519771 ATGTGCCCATGTTGATCTGT 57.480 45.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.