Multiple sequence alignment - TraesCS5B01G263900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G263900 chr5B 100.000 4580 0 0 1 4580 448277757 448273178 0.000000e+00 8458.0
1 TraesCS5B01G263900 chr5B 78.648 562 105 15 2445 2998 448122313 448122867 4.360000e-95 359.0
2 TraesCS5B01G263900 chr5B 89.041 146 16 0 3359 3504 450619645 450619500 1.010000e-41 182.0
3 TraesCS5B01G263900 chr5D 94.300 1807 85 9 2360 4153 375408498 375406697 0.000000e+00 2750.0
4 TraesCS5B01G263900 chr5D 92.133 661 41 8 1711 2368 375409963 375409311 0.000000e+00 922.0
5 TraesCS5B01G263900 chr5D 88.939 443 39 8 4146 4580 375406642 375406202 5.210000e-149 538.0
6 TraesCS5B01G263900 chr5D 92.157 255 19 1 350 603 375410550 375410296 4.360000e-95 359.0
7 TraesCS5B01G263900 chr5D 78.292 562 107 15 2445 2998 375280913 375281467 9.430000e-92 348.0
8 TraesCS5B01G263900 chr5D 81.780 236 17 13 1436 1665 375410177 375409962 1.690000e-39 174.0
9 TraesCS5B01G263900 chr5A 93.298 1507 93 6 1691 3195 476753931 476752431 0.000000e+00 2217.0
10 TraesCS5B01G263900 chr5A 93.923 905 51 4 3192 4095 476691758 476690857 0.000000e+00 1363.0
11 TraesCS5B01G263900 chr5A 97.843 510 9 2 602 1110 69821710 69821202 0.000000e+00 880.0
12 TraesCS5B01G263900 chr5A 97.656 512 10 2 602 1112 69814566 69814056 0.000000e+00 878.0
13 TraesCS5B01G263900 chr5A 97.446 509 11 2 603 1110 69828522 69828015 0.000000e+00 867.0
14 TraesCS5B01G263900 chr5A 78.826 562 104 15 2445 2998 476658501 476659055 9.360000e-97 364.0
15 TraesCS5B01G263900 chr5A 89.865 148 15 0 3357 3504 477818679 477818532 1.680000e-44 191.0
16 TraesCS5B01G263900 chr5A 76.353 351 65 16 4233 4572 36499142 36498799 6.090000e-39 172.0
17 TraesCS5B01G263900 chr5A 84.564 149 23 0 3361 3509 677950965 677951113 1.030000e-31 148.0
18 TraesCS5B01G263900 chr5A 95.604 91 4 0 5 95 476754253 476754163 3.690000e-31 147.0
19 TraesCS5B01G263900 chr5A 81.081 185 28 6 3047 3229 677957064 677957243 1.720000e-29 141.0
20 TraesCS5B01G263900 chr5A 82.317 164 26 1 3345 3505 677957389 677957552 6.180000e-29 139.0
21 TraesCS5B01G263900 chr5A 81.366 161 29 1 4421 4580 476689817 476689657 3.720000e-26 130.0
22 TraesCS5B01G263900 chr2B 97.839 509 9 2 603 1110 747864101 747864608 0.000000e+00 878.0
23 TraesCS5B01G263900 chr7D 92.386 394 19 5 602 995 575172060 575172442 6.700000e-153 551.0
24 TraesCS5B01G263900 chr7D 94.175 309 16 2 797 1104 575165319 575165626 1.930000e-128 470.0
25 TraesCS5B01G263900 chr7D 94.406 143 8 0 603 745 575152504 575152646 2.150000e-53 220.0
26 TraesCS5B01G263900 chr7D 97.368 38 0 1 4146 4183 64517313 64517349 3.830000e-06 63.9
27 TraesCS5B01G263900 chr3D 75.390 577 74 33 1111 1651 520574071 520574615 2.770000e-52 217.0
28 TraesCS5B01G263900 chr3D 82.278 79 13 1 3139 3216 419874221 419874143 2.960000e-07 67.6
29 TraesCS5B01G263900 chr4D 86.000 150 19 2 3361 3509 497668764 497668616 4.740000e-35 159.0
30 TraesCS5B01G263900 chr4D 84.564 149 23 0 3361 3509 497647990 497648138 1.030000e-31 148.0
31 TraesCS5B01G263900 chr3B 74.373 359 72 16 4234 4580 751789737 751790087 7.990000e-28 135.0
32 TraesCS5B01G263900 chr4B 80.488 164 29 1 3345 3505 638844351 638844514 6.220000e-24 122.0
33 TraesCS5B01G263900 chr3A 75.000 160 34 6 3054 3210 531455189 531455345 8.220000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G263900 chr5B 448273178 448277757 4579 True 8458.0 8458 100.0000 1 4580 1 chr5B.!!$R1 4579
1 TraesCS5B01G263900 chr5B 448122313 448122867 554 False 359.0 359 78.6480 2445 2998 1 chr5B.!!$F1 553
2 TraesCS5B01G263900 chr5D 375406202 375410550 4348 True 948.6 2750 89.8618 350 4580 5 chr5D.!!$R1 4230
3 TraesCS5B01G263900 chr5D 375280913 375281467 554 False 348.0 348 78.2920 2445 2998 1 chr5D.!!$F1 553
4 TraesCS5B01G263900 chr5A 476752431 476754253 1822 True 1182.0 2217 94.4510 5 3195 2 chr5A.!!$R7 3190
5 TraesCS5B01G263900 chr5A 69821202 69821710 508 True 880.0 880 97.8430 602 1110 1 chr5A.!!$R3 508
6 TraesCS5B01G263900 chr5A 69814056 69814566 510 True 878.0 878 97.6560 602 1112 1 chr5A.!!$R2 510
7 TraesCS5B01G263900 chr5A 69828015 69828522 507 True 867.0 867 97.4460 603 1110 1 chr5A.!!$R4 507
8 TraesCS5B01G263900 chr5A 476689657 476691758 2101 True 746.5 1363 87.6445 3192 4580 2 chr5A.!!$R6 1388
9 TraesCS5B01G263900 chr5A 476658501 476659055 554 False 364.0 364 78.8260 2445 2998 1 chr5A.!!$F1 553
10 TraesCS5B01G263900 chr2B 747864101 747864608 507 False 878.0 878 97.8390 603 1110 1 chr2B.!!$F1 507
11 TraesCS5B01G263900 chr3D 520574071 520574615 544 False 217.0 217 75.3900 1111 1651 1 chr3D.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.033405 TAGTTAGAGGCCTGCTCGGT 60.033 55.0 12.00 0.00 34.25 4.69 F
213 214 0.033405 TTAGAGGCCTGCTCGGTAGT 60.033 55.0 12.00 0.00 34.25 2.73 F
214 215 0.033405 TAGAGGCCTGCTCGGTAGTT 60.033 55.0 12.00 0.00 34.25 2.24 F
281 282 0.094558 CTAGATAGAGCGAGCGAGCG 59.905 60.0 0.00 0.00 43.00 5.03 F
499 501 0.179156 CAACTCATGCCAATGTCCGC 60.179 55.0 0.00 0.00 35.15 5.54 F
1876 1923 0.246757 GTTGTGTATCTCGCGCGTTG 60.247 55.0 30.98 22.78 0.00 4.10 F
1916 1963 0.764890 TCCCAACCTCACCTTCACAG 59.235 55.0 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1218 1221 0.037697 TTGGATCAGTCCCAACGACG 60.038 55.000 0.00 0.0 46.92 5.12 R
1582 1626 0.391597 TCTTTCCCCGACAGTGTCAC 59.608 55.000 22.66 0.0 32.09 3.67 R
2001 2048 1.033202 ACCAACGCCCGAGTGTTTTT 61.033 50.000 0.00 0.0 44.23 1.94 R
2067 2114 2.306805 TGAAGCCACCTGTTCAGATCAT 59.693 45.455 1.00 0.0 0.00 2.45 R
2394 3262 0.242825 TACTTTCTCCGGTGCTGTCG 59.757 55.000 0.00 0.0 0.00 4.35 R
2814 3683 0.397941 TGGAGGTCCTTCACTTGCAG 59.602 55.000 0.00 0.0 36.82 4.41 R
3912 4785 0.473755 TCTGTTCTGCAAAGGAGGCA 59.526 50.000 0.00 0.0 39.32 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 4.493747 CCGAGGAAGACGACGGCC 62.494 72.222 0.00 0.00 37.19 6.13
92 93 4.831307 CGAGGAAGACGACGGCCG 62.831 72.222 26.86 26.86 45.44 6.13
93 94 3.437795 GAGGAAGACGACGGCCGA 61.438 66.667 35.90 0.00 41.76 5.54
94 95 3.680338 GAGGAAGACGACGGCCGAC 62.680 68.421 35.90 26.45 41.76 4.79
121 122 1.376037 CCTCAAAGAGGTGACGGGC 60.376 63.158 4.89 0.00 44.25 6.13
122 123 1.674057 CTCAAAGAGGTGACGGGCT 59.326 57.895 0.00 0.00 0.00 5.19
123 124 0.035458 CTCAAAGAGGTGACGGGCTT 59.965 55.000 0.00 0.00 0.00 4.35
124 125 0.034896 TCAAAGAGGTGACGGGCTTC 59.965 55.000 0.00 0.00 0.00 3.86
125 126 0.955919 CAAAGAGGTGACGGGCTTCC 60.956 60.000 0.00 0.00 0.00 3.46
126 127 1.415672 AAAGAGGTGACGGGCTTCCA 61.416 55.000 0.00 0.00 0.00 3.53
127 128 1.831652 AAGAGGTGACGGGCTTCCAG 61.832 60.000 0.00 0.00 0.00 3.86
128 129 3.316573 GAGGTGACGGGCTTCCAGG 62.317 68.421 0.00 0.00 0.00 4.45
146 147 3.291383 CGCCGGCCTTTTGTTGGA 61.291 61.111 23.46 0.00 0.00 3.53
147 148 2.635443 CGCCGGCCTTTTGTTGGAT 61.635 57.895 23.46 0.00 0.00 3.41
148 149 1.079888 GCCGGCCTTTTGTTGGATG 60.080 57.895 18.11 0.00 0.00 3.51
149 150 1.591183 CCGGCCTTTTGTTGGATGG 59.409 57.895 0.00 0.00 0.00 3.51
150 151 1.591183 CGGCCTTTTGTTGGATGGG 59.409 57.895 0.00 0.00 0.00 4.00
151 152 1.296392 GGCCTTTTGTTGGATGGGC 59.704 57.895 0.00 0.00 38.92 5.36
152 153 1.194121 GGCCTTTTGTTGGATGGGCT 61.194 55.000 0.00 0.00 39.78 5.19
153 154 0.037046 GCCTTTTGTTGGATGGGCTG 60.037 55.000 0.00 0.00 36.96 4.85
154 155 1.341080 CCTTTTGTTGGATGGGCTGT 58.659 50.000 0.00 0.00 0.00 4.40
155 156 2.524306 CCTTTTGTTGGATGGGCTGTA 58.476 47.619 0.00 0.00 0.00 2.74
156 157 3.099141 CCTTTTGTTGGATGGGCTGTAT 58.901 45.455 0.00 0.00 0.00 2.29
157 158 3.515104 CCTTTTGTTGGATGGGCTGTATT 59.485 43.478 0.00 0.00 0.00 1.89
158 159 4.381932 CCTTTTGTTGGATGGGCTGTATTC 60.382 45.833 0.00 0.00 0.00 1.75
159 160 3.737559 TTGTTGGATGGGCTGTATTCT 57.262 42.857 0.00 0.00 0.00 2.40
160 161 3.003394 TGTTGGATGGGCTGTATTCTG 57.997 47.619 0.00 0.00 0.00 3.02
161 162 2.308570 TGTTGGATGGGCTGTATTCTGT 59.691 45.455 0.00 0.00 0.00 3.41
162 163 2.684881 GTTGGATGGGCTGTATTCTGTG 59.315 50.000 0.00 0.00 0.00 3.66
163 164 1.312815 GGATGGGCTGTATTCTGTGC 58.687 55.000 0.00 0.00 0.00 4.57
164 165 0.940126 GATGGGCTGTATTCTGTGCG 59.060 55.000 0.00 0.00 0.00 5.34
165 166 0.541392 ATGGGCTGTATTCTGTGCGA 59.459 50.000 0.00 0.00 0.00 5.10
166 167 0.323302 TGGGCTGTATTCTGTGCGAA 59.677 50.000 0.00 0.00 35.78 4.70
167 168 0.727398 GGGCTGTATTCTGTGCGAAC 59.273 55.000 0.00 0.00 33.72 3.95
168 169 1.676014 GGGCTGTATTCTGTGCGAACT 60.676 52.381 0.00 0.00 33.72 3.01
169 170 2.076863 GGCTGTATTCTGTGCGAACTT 58.923 47.619 0.00 0.00 33.72 2.66
170 171 2.159653 GGCTGTATTCTGTGCGAACTTG 60.160 50.000 0.00 0.00 33.72 3.16
171 172 2.726066 GCTGTATTCTGTGCGAACTTGC 60.726 50.000 0.00 0.00 33.72 4.01
172 173 2.738846 CTGTATTCTGTGCGAACTTGCT 59.261 45.455 0.00 0.00 33.72 3.91
173 174 2.480037 TGTATTCTGTGCGAACTTGCTG 59.520 45.455 0.00 0.00 33.72 4.41
174 175 1.597742 ATTCTGTGCGAACTTGCTGT 58.402 45.000 0.00 0.00 33.72 4.40
175 176 0.937304 TTCTGTGCGAACTTGCTGTC 59.063 50.000 0.00 0.00 35.36 3.51
176 177 1.202568 CTGTGCGAACTTGCTGTCG 59.797 57.895 0.00 0.00 35.36 4.35
177 178 2.162921 CTGTGCGAACTTGCTGTCGG 62.163 60.000 0.00 0.00 35.36 4.79
178 179 2.664851 TGCGAACTTGCTGTCGGG 60.665 61.111 0.00 0.00 35.36 5.14
179 180 4.090057 GCGAACTTGCTGTCGGGC 62.090 66.667 0.00 0.00 0.00 6.13
180 181 2.357517 CGAACTTGCTGTCGGGCT 60.358 61.111 0.00 0.00 0.00 5.19
181 182 1.080093 CGAACTTGCTGTCGGGCTA 60.080 57.895 0.00 0.00 0.00 3.93
182 183 1.352156 CGAACTTGCTGTCGGGCTAC 61.352 60.000 0.00 0.00 0.00 3.58
183 184 1.352156 GAACTTGCTGTCGGGCTACG 61.352 60.000 0.00 0.00 46.11 3.51
184 185 2.509336 CTTGCTGTCGGGCTACGG 60.509 66.667 1.81 0.00 44.45 4.02
195 196 2.575461 GCTACGGCCCGTGTAGTT 59.425 61.111 21.20 0.00 41.39 2.24
196 197 1.809207 GCTACGGCCCGTGTAGTTA 59.191 57.895 21.20 0.00 41.39 2.24
197 198 0.248784 GCTACGGCCCGTGTAGTTAG 60.249 60.000 21.20 8.20 41.39 2.34
198 199 1.382522 CTACGGCCCGTGTAGTTAGA 58.617 55.000 21.20 0.00 41.39 2.10
199 200 1.332997 CTACGGCCCGTGTAGTTAGAG 59.667 57.143 21.20 0.79 41.39 2.43
200 201 1.318158 ACGGCCCGTGTAGTTAGAGG 61.318 60.000 8.62 0.00 39.18 3.69
201 202 1.143401 GGCCCGTGTAGTTAGAGGC 59.857 63.158 0.00 0.00 39.73 4.70
202 203 1.143401 GCCCGTGTAGTTAGAGGCC 59.857 63.158 0.00 0.00 34.23 5.19
203 204 1.328430 GCCCGTGTAGTTAGAGGCCT 61.328 60.000 3.86 3.86 34.23 5.19
204 205 0.460311 CCCGTGTAGTTAGAGGCCTG 59.540 60.000 12.00 0.00 0.00 4.85
205 206 0.179108 CCGTGTAGTTAGAGGCCTGC 60.179 60.000 12.00 1.09 0.00 4.85
206 207 0.818296 CGTGTAGTTAGAGGCCTGCT 59.182 55.000 12.00 10.21 0.00 4.24
207 208 1.202313 CGTGTAGTTAGAGGCCTGCTC 60.202 57.143 12.00 0.00 0.00 4.26
208 209 1.103803 TGTAGTTAGAGGCCTGCTCG 58.896 55.000 12.00 0.00 0.00 5.03
209 210 0.386113 GTAGTTAGAGGCCTGCTCGG 59.614 60.000 12.00 0.00 0.00 4.63
210 211 0.033405 TAGTTAGAGGCCTGCTCGGT 60.033 55.000 12.00 0.00 34.25 4.69
211 212 0.033405 AGTTAGAGGCCTGCTCGGTA 60.033 55.000 12.00 0.00 34.25 4.02
212 213 0.386113 GTTAGAGGCCTGCTCGGTAG 59.614 60.000 12.00 0.00 34.25 3.18
213 214 0.033405 TTAGAGGCCTGCTCGGTAGT 60.033 55.000 12.00 0.00 34.25 2.73
214 215 0.033405 TAGAGGCCTGCTCGGTAGTT 60.033 55.000 12.00 0.00 34.25 2.24
215 216 1.142097 GAGGCCTGCTCGGTAGTTC 59.858 63.158 12.00 0.00 34.25 3.01
216 217 1.305381 AGGCCTGCTCGGTAGTTCT 60.305 57.895 3.11 0.00 34.25 3.01
217 218 1.142097 GGCCTGCTCGGTAGTTCTC 59.858 63.158 0.00 0.00 34.25 2.87
218 219 1.226717 GCCTGCTCGGTAGTTCTCG 60.227 63.158 0.00 0.00 34.25 4.04
219 220 1.935327 GCCTGCTCGGTAGTTCTCGT 61.935 60.000 0.00 0.00 34.25 4.18
220 221 0.179161 CCTGCTCGGTAGTTCTCGTG 60.179 60.000 0.00 0.00 0.00 4.35
221 222 0.522180 CTGCTCGGTAGTTCTCGTGT 59.478 55.000 0.00 0.00 0.00 4.49
222 223 1.736126 CTGCTCGGTAGTTCTCGTGTA 59.264 52.381 0.00 0.00 0.00 2.90
223 224 2.153645 TGCTCGGTAGTTCTCGTGTAA 58.846 47.619 0.00 0.00 0.00 2.41
224 225 2.161012 TGCTCGGTAGTTCTCGTGTAAG 59.839 50.000 0.00 0.00 0.00 2.34
225 226 2.161211 GCTCGGTAGTTCTCGTGTAAGT 59.839 50.000 0.00 0.00 0.00 2.24
226 227 3.372206 GCTCGGTAGTTCTCGTGTAAGTA 59.628 47.826 0.00 0.00 0.00 2.24
227 228 4.034975 GCTCGGTAGTTCTCGTGTAAGTAT 59.965 45.833 0.00 0.00 0.00 2.12
228 229 5.448360 GCTCGGTAGTTCTCGTGTAAGTATT 60.448 44.000 0.00 0.00 0.00 1.89
229 230 6.238211 GCTCGGTAGTTCTCGTGTAAGTATTA 60.238 42.308 0.00 0.00 0.00 0.98
230 231 7.519649 GCTCGGTAGTTCTCGTGTAAGTATTAT 60.520 40.741 0.00 0.00 30.46 1.28
231 232 7.855545 TCGGTAGTTCTCGTGTAAGTATTATC 58.144 38.462 0.00 0.00 30.46 1.75
232 233 7.041780 TCGGTAGTTCTCGTGTAAGTATTATCC 60.042 40.741 0.00 0.00 30.46 2.59
233 234 7.254898 CGGTAGTTCTCGTGTAAGTATTATCCA 60.255 40.741 0.00 0.00 30.46 3.41
234 235 8.408601 GGTAGTTCTCGTGTAAGTATTATCCAA 58.591 37.037 0.00 0.00 30.46 3.53
235 236 9.793252 GTAGTTCTCGTGTAAGTATTATCCAAA 57.207 33.333 0.00 0.00 30.46 3.28
237 238 9.715121 AGTTCTCGTGTAAGTATTATCCAAAAA 57.285 29.630 0.00 0.00 30.46 1.94
262 263 2.969628 AACTCATCTCATGTCGACCC 57.030 50.000 14.12 0.00 0.00 4.46
263 264 2.151502 ACTCATCTCATGTCGACCCT 57.848 50.000 14.12 0.00 0.00 4.34
264 265 3.298686 ACTCATCTCATGTCGACCCTA 57.701 47.619 14.12 0.00 0.00 3.53
265 266 3.218453 ACTCATCTCATGTCGACCCTAG 58.782 50.000 14.12 7.42 0.00 3.02
266 267 3.117851 ACTCATCTCATGTCGACCCTAGA 60.118 47.826 14.12 12.66 0.00 2.43
267 268 4.078537 CTCATCTCATGTCGACCCTAGAT 58.921 47.826 14.12 14.32 0.00 1.98
268 269 5.221945 ACTCATCTCATGTCGACCCTAGATA 60.222 44.000 14.12 6.61 0.00 1.98
269 270 5.249420 TCATCTCATGTCGACCCTAGATAG 58.751 45.833 14.12 11.74 0.00 2.08
270 271 4.976540 TCTCATGTCGACCCTAGATAGA 57.023 45.455 14.12 3.66 0.00 1.98
271 272 4.900684 TCTCATGTCGACCCTAGATAGAG 58.099 47.826 14.12 8.39 0.00 2.43
272 273 3.413327 TCATGTCGACCCTAGATAGAGC 58.587 50.000 14.12 0.00 0.00 4.09
273 274 1.880271 TGTCGACCCTAGATAGAGCG 58.120 55.000 14.12 0.00 0.00 5.03
274 275 1.415289 TGTCGACCCTAGATAGAGCGA 59.585 52.381 14.12 0.00 0.00 4.93
275 276 2.070783 GTCGACCCTAGATAGAGCGAG 58.929 57.143 3.51 0.00 0.00 5.03
276 277 0.800012 CGACCCTAGATAGAGCGAGC 59.200 60.000 0.00 0.00 0.00 5.03
277 278 0.800012 GACCCTAGATAGAGCGAGCG 59.200 60.000 0.00 0.00 0.00 5.03
278 279 0.397187 ACCCTAGATAGAGCGAGCGA 59.603 55.000 0.00 0.00 0.00 4.93
279 280 1.083489 CCCTAGATAGAGCGAGCGAG 58.917 60.000 0.00 0.00 0.00 5.03
280 281 0.446222 CCTAGATAGAGCGAGCGAGC 59.554 60.000 0.00 0.00 37.41 5.03
281 282 0.094558 CTAGATAGAGCGAGCGAGCG 59.905 60.000 0.00 0.00 43.00 5.03
282 283 0.319641 TAGATAGAGCGAGCGAGCGA 60.320 55.000 1.41 0.00 43.00 4.93
283 284 1.154488 GATAGAGCGAGCGAGCGAG 60.154 63.158 1.41 0.00 43.00 5.03
284 285 3.248630 ATAGAGCGAGCGAGCGAGC 62.249 63.158 9.12 9.12 43.00 5.03
290 291 4.135153 GAGCGAGCGAGCAAGGGA 62.135 66.667 9.01 0.00 40.15 4.20
291 292 4.140599 AGCGAGCGAGCAAGGGAG 62.141 66.667 9.01 0.00 40.15 4.30
311 312 2.446036 GCCGACCCCAGGAGGTAT 60.446 66.667 0.00 0.00 41.42 2.73
312 313 2.508751 GCCGACCCCAGGAGGTATC 61.509 68.421 0.00 0.00 41.42 2.24
313 314 2.201022 CCGACCCCAGGAGGTATCG 61.201 68.421 0.00 1.52 41.42 2.92
314 315 2.857744 CGACCCCAGGAGGTATCGC 61.858 68.421 0.00 0.00 41.42 4.58
315 316 2.446036 ACCCCAGGAGGTATCGCC 60.446 66.667 0.00 0.00 38.79 5.54
316 317 3.616721 CCCCAGGAGGTATCGCCG 61.617 72.222 0.00 0.00 43.70 6.46
317 318 4.301027 CCCAGGAGGTATCGCCGC 62.301 72.222 0.00 0.00 43.70 6.53
318 319 4.647615 CCAGGAGGTATCGCCGCG 62.648 72.222 6.39 6.39 43.70 6.46
348 349 3.407967 CCGTGGTACCATGGGGCT 61.408 66.667 36.74 0.00 46.47 5.19
352 353 2.305607 TGGTACCATGGGGCTGACC 61.306 63.158 18.09 14.68 37.90 4.02
362 363 4.222847 GGCTGACCCGATCCCGTC 62.223 72.222 0.79 0.79 0.00 4.79
401 402 2.194212 GCTCCCCTCATCGCGTCTA 61.194 63.158 5.77 0.00 0.00 2.59
422 423 2.942376 ACGTTCTGATCTTGTGCAAACA 59.058 40.909 0.00 0.00 0.00 2.83
425 426 3.564235 TCTGATCTTGTGCAAACATGC 57.436 42.857 0.00 0.00 0.00 4.06
433 434 0.600782 GTGCAAACATGCCCCTGTTG 60.601 55.000 0.00 0.00 39.25 3.33
448 449 3.600388 CCTGTTGGAGATGGTACTGAAC 58.400 50.000 0.00 0.00 34.57 3.18
469 471 2.124983 CGTGGCATGAGACCTGGG 60.125 66.667 0.00 0.00 0.00 4.45
485 487 2.623416 CCTGGGGTTTTCTTGTCAACTC 59.377 50.000 0.00 0.00 0.00 3.01
489 491 3.552890 GGGGTTTTCTTGTCAACTCATGC 60.553 47.826 0.00 0.00 0.00 4.06
497 499 2.161855 TGTCAACTCATGCCAATGTCC 58.838 47.619 0.00 0.00 35.15 4.02
499 501 0.179156 CAACTCATGCCAATGTCCGC 60.179 55.000 0.00 0.00 35.15 5.54
567 569 2.335712 CCGGTGGCCAAGAGAAAGC 61.336 63.158 7.24 0.00 0.00 3.51
632 634 4.142609 TGATCTCAGGCAGTTATTGACC 57.857 45.455 0.00 0.00 34.24 4.02
782 784 5.942236 AGGAGAGTACACACATAAGTACGAA 59.058 40.000 0.00 0.00 43.98 3.85
927 929 0.327591 CTGCTGCCTTTCTCTTCCCT 59.672 55.000 0.00 0.00 0.00 4.20
959 961 2.637382 TGTTGCTGGAGATCACAAGGTA 59.363 45.455 0.00 0.00 0.00 3.08
982 984 0.914417 CCATGGTCTACACAGGGGGT 60.914 60.000 2.57 0.00 36.21 4.95
1078 1081 2.957006 GTCAGAGATTAGGCCCTTACGA 59.043 50.000 0.00 0.00 0.00 3.43
1118 1121 1.305201 TTTTCCTGACACGTCAAGCC 58.695 50.000 0.92 0.00 39.39 4.35
1179 1182 1.929376 CGTCCGCCTATAAAACGCC 59.071 57.895 0.00 0.00 0.00 5.68
1187 1190 3.004315 CGCCTATAAAACGCCCATGATTT 59.996 43.478 0.00 0.00 0.00 2.17
1188 1191 4.499019 CGCCTATAAAACGCCCATGATTTT 60.499 41.667 0.00 0.00 0.00 1.82
1190 1193 5.234116 GCCTATAAAACGCCCATGATTTTTG 59.766 40.000 0.00 0.00 0.00 2.44
1194 1197 2.939460 ACGCCCATGATTTTTGTAGC 57.061 45.000 0.00 0.00 0.00 3.58
1197 1200 4.013728 ACGCCCATGATTTTTGTAGCTAA 58.986 39.130 0.00 0.00 0.00 3.09
1198 1201 4.461081 ACGCCCATGATTTTTGTAGCTAAA 59.539 37.500 0.00 0.00 0.00 1.85
1199 1202 4.798387 CGCCCATGATTTTTGTAGCTAAAC 59.202 41.667 0.00 0.00 0.00 2.01
1212 1215 9.887406 TTTTGTAGCTAAACAATGTAACTTAGC 57.113 29.630 16.36 16.36 39.04 3.09
1214 1217 8.842358 TGTAGCTAAACAATGTAACTTAGCTT 57.158 30.769 26.10 15.42 43.36 3.74
1218 1221 8.290325 AGCTAAACAATGTAACTTAGCTTTGTC 58.710 33.333 19.44 0.00 43.36 3.18
1221 1224 6.224420 ACAATGTAACTTAGCTTTGTCGTC 57.776 37.500 0.00 0.00 0.00 4.20
1251 1260 2.422479 TGATCCAACTTCCGACTACTCG 59.578 50.000 0.00 0.00 39.83 4.18
1259 1268 3.757493 ACTTCCGACTACTCGATTTGACT 59.243 43.478 0.00 0.00 43.06 3.41
1263 1272 6.057627 TCCGACTACTCGATTTGACTAATC 57.942 41.667 0.09 0.09 43.06 1.75
1281 1290 7.488150 TGACTAATCGTTTGAACTATGCTACTG 59.512 37.037 0.00 0.00 0.00 2.74
1287 1296 5.350365 CGTTTGAACTATGCTACTGGCTAAA 59.650 40.000 0.00 0.00 42.39 1.85
1289 1298 7.410485 GTTTGAACTATGCTACTGGCTAAATC 58.590 38.462 0.00 0.00 42.39 2.17
1291 1300 6.889198 TGAACTATGCTACTGGCTAAATCTT 58.111 36.000 0.00 0.00 42.39 2.40
1301 1310 5.876357 ACTGGCTAAATCTTAGTTGTGGAA 58.124 37.500 0.00 0.00 0.00 3.53
1303 1312 6.775629 ACTGGCTAAATCTTAGTTGTGGAAAA 59.224 34.615 0.00 0.00 0.00 2.29
1304 1313 7.040409 ACTGGCTAAATCTTAGTTGTGGAAAAG 60.040 37.037 0.00 0.00 0.00 2.27
1307 1316 8.451748 GGCTAAATCTTAGTTGTGGAAAAGTAG 58.548 37.037 0.00 0.00 0.00 2.57
1308 1317 9.000486 GCTAAATCTTAGTTGTGGAAAAGTAGT 58.000 33.333 0.00 0.00 0.00 2.73
1311 1320 8.974060 AATCTTAGTTGTGGAAAAGTAGTTCA 57.026 30.769 0.00 0.00 0.00 3.18
1312 1321 8.608844 ATCTTAGTTGTGGAAAAGTAGTTCAG 57.391 34.615 0.00 0.00 0.00 3.02
1313 1322 6.990349 TCTTAGTTGTGGAAAAGTAGTTCAGG 59.010 38.462 0.00 0.00 0.00 3.86
1314 1323 5.367945 AGTTGTGGAAAAGTAGTTCAGGA 57.632 39.130 0.00 0.00 0.00 3.86
1315 1324 5.941788 AGTTGTGGAAAAGTAGTTCAGGAT 58.058 37.500 0.00 0.00 0.00 3.24
1316 1325 7.074653 AGTTGTGGAAAAGTAGTTCAGGATA 57.925 36.000 0.00 0.00 0.00 2.59
1318 1327 8.164070 AGTTGTGGAAAAGTAGTTCAGGATAAT 58.836 33.333 0.00 0.00 0.00 1.28
1319 1328 9.444600 GTTGTGGAAAAGTAGTTCAGGATAATA 57.555 33.333 0.00 0.00 0.00 0.98
1367 1384 6.060788 AGAAGCACTTTCAGAGTTTCAGAAT 58.939 36.000 0.00 0.00 38.31 2.40
1370 1387 5.824624 AGCACTTTCAGAGTTTCAGAATTGA 59.175 36.000 0.00 0.00 36.10 2.57
1371 1388 6.319658 AGCACTTTCAGAGTTTCAGAATTGAA 59.680 34.615 0.00 0.00 41.44 2.69
1372 1389 6.636044 GCACTTTCAGAGTTTCAGAATTGAAG 59.364 38.462 0.00 0.00 43.76 3.02
1373 1390 7.467811 GCACTTTCAGAGTTTCAGAATTGAAGA 60.468 37.037 0.00 0.00 43.76 2.87
1375 1392 9.129532 ACTTTCAGAGTTTCAGAATTGAAGATT 57.870 29.630 0.00 0.00 43.76 2.40
1376 1393 9.962783 CTTTCAGAGTTTCAGAATTGAAGATTT 57.037 29.630 0.00 0.00 43.76 2.17
1398 1415 9.248291 GATTTAACTTTTCATGAACTTGAGCAA 57.752 29.630 7.89 0.00 0.00 3.91
1426 1443 7.558444 AGTGTTACTGGATTGTTCAAGGTTTTA 59.442 33.333 0.00 0.00 0.00 1.52
1455 1492 7.575720 GCAACATGCTTTCTAGGAACAAGTAAT 60.576 37.037 0.00 0.00 40.96 1.89
1456 1493 8.946085 CAACATGCTTTCTAGGAACAAGTAATA 58.054 33.333 0.00 0.00 0.00 0.98
1499 1543 3.328050 AGTTTCTTGGTTCCCACTAGAGG 59.672 47.826 0.00 0.00 30.78 3.69
1534 1578 8.988934 TGCTGTCTACAAACAAGTAAAGAATAG 58.011 33.333 0.00 0.00 0.00 1.73
1537 1581 9.502091 TGTCTACAAACAAGTAAAGAATAGCAT 57.498 29.630 0.00 0.00 0.00 3.79
1542 1586 7.862372 ACAAACAAGTAAAGAATAGCATGTGTG 59.138 33.333 0.00 0.00 32.40 3.82
1544 1588 6.902341 ACAAGTAAAGAATAGCATGTGTGTG 58.098 36.000 0.00 0.00 0.00 3.82
1546 1590 6.486253 AGTAAAGAATAGCATGTGTGTGTG 57.514 37.500 0.00 0.00 0.00 3.82
1548 1592 4.754372 AAGAATAGCATGTGTGTGTGTG 57.246 40.909 0.00 0.00 0.00 3.82
1549 1593 3.743521 AGAATAGCATGTGTGTGTGTGT 58.256 40.909 0.00 0.00 0.00 3.72
1550 1594 3.499537 AGAATAGCATGTGTGTGTGTGTG 59.500 43.478 0.00 0.00 0.00 3.82
1551 1595 2.323968 TAGCATGTGTGTGTGTGTGT 57.676 45.000 0.00 0.00 0.00 3.72
1552 1596 0.734309 AGCATGTGTGTGTGTGTGTG 59.266 50.000 0.00 0.00 0.00 3.82
1553 1597 0.451383 GCATGTGTGTGTGTGTGTGT 59.549 50.000 0.00 0.00 0.00 3.72
1554 1598 1.794800 GCATGTGTGTGTGTGTGTGTG 60.795 52.381 0.00 0.00 0.00 3.82
1555 1599 1.468127 CATGTGTGTGTGTGTGTGTGT 59.532 47.619 0.00 0.00 0.00 3.72
1556 1600 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1557 1601 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1558 1602 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1559 1603 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1560 1604 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1561 1605 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1562 1606 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1569 1613 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
1570 1614 1.737236 GTGTGTGTGTGTGTGTGTGAT 59.263 47.619 0.00 0.00 0.00 3.06
1582 1626 2.819019 TGTGTGTGATATTGCCAACCAG 59.181 45.455 0.00 0.00 0.00 4.00
1611 1655 3.835978 TGTCGGGGAAAGAATACTTCTCA 59.164 43.478 0.00 0.00 39.61 3.27
1657 1701 0.963355 TTGGCATTCCGTTGGGCTAC 60.963 55.000 0.00 0.00 34.14 3.58
1663 1707 0.968405 TTCCGTTGGGCTACGTTACT 59.032 50.000 0.00 0.00 39.81 2.24
1664 1708 0.527565 TCCGTTGGGCTACGTTACTC 59.472 55.000 0.00 0.00 39.81 2.59
1665 1709 0.529378 CCGTTGGGCTACGTTACTCT 59.471 55.000 0.00 0.00 39.81 3.24
1666 1710 1.625616 CGTTGGGCTACGTTACTCTG 58.374 55.000 0.00 0.00 36.80 3.35
1667 1711 1.068055 CGTTGGGCTACGTTACTCTGT 60.068 52.381 0.00 0.00 36.80 3.41
1668 1712 2.162208 CGTTGGGCTACGTTACTCTGTA 59.838 50.000 0.00 0.00 36.80 2.74
1669 1713 3.366273 CGTTGGGCTACGTTACTCTGTAA 60.366 47.826 0.00 0.00 36.80 2.41
1670 1714 4.676196 CGTTGGGCTACGTTACTCTGTAAT 60.676 45.833 0.00 0.00 36.80 1.89
1671 1715 4.380841 TGGGCTACGTTACTCTGTAATG 57.619 45.455 0.00 7.80 0.00 1.90
1672 1716 3.765511 TGGGCTACGTTACTCTGTAATGT 59.234 43.478 16.29 16.29 0.00 2.71
1673 1717 4.221262 TGGGCTACGTTACTCTGTAATGTT 59.779 41.667 16.98 5.72 0.00 2.71
1674 1718 4.802563 GGGCTACGTTACTCTGTAATGTTC 59.197 45.833 16.98 11.06 0.00 3.18
1675 1719 5.393896 GGGCTACGTTACTCTGTAATGTTCT 60.394 44.000 16.98 0.50 0.00 3.01
1676 1720 6.183360 GGGCTACGTTACTCTGTAATGTTCTA 60.183 42.308 16.98 3.29 0.00 2.10
1677 1721 6.911511 GGCTACGTTACTCTGTAATGTTCTAG 59.088 42.308 16.98 11.39 0.00 2.43
1678 1722 6.414402 GCTACGTTACTCTGTAATGTTCTAGC 59.586 42.308 16.98 15.70 0.00 3.42
1679 1723 6.263516 ACGTTACTCTGTAATGTTCTAGCA 57.736 37.500 8.88 0.00 0.00 3.49
1680 1724 6.091437 ACGTTACTCTGTAATGTTCTAGCAC 58.909 40.000 8.88 0.00 0.00 4.40
1681 1725 6.090783 CGTTACTCTGTAATGTTCTAGCACA 58.909 40.000 0.00 0.00 0.00 4.57
1682 1726 6.033619 CGTTACTCTGTAATGTTCTAGCACAC 59.966 42.308 0.00 0.00 0.00 3.82
1683 1727 5.468540 ACTCTGTAATGTTCTAGCACACA 57.531 39.130 0.00 0.00 0.00 3.72
1684 1728 5.853936 ACTCTGTAATGTTCTAGCACACAA 58.146 37.500 0.00 0.00 0.00 3.33
1685 1729 6.467677 ACTCTGTAATGTTCTAGCACACAAT 58.532 36.000 0.00 0.00 0.00 2.71
1686 1730 6.369890 ACTCTGTAATGTTCTAGCACACAATG 59.630 38.462 0.00 0.00 0.00 2.82
1766 1812 2.040544 CGGCTCGCCTCCACAATTT 61.041 57.895 6.35 0.00 0.00 1.82
1767 1813 1.508088 GGCTCGCCTCCACAATTTG 59.492 57.895 0.00 0.00 0.00 2.32
1777 1824 4.929211 GCCTCCACAATTTGAATGTTAACC 59.071 41.667 2.79 0.00 0.00 2.85
1790 1837 4.946160 ATGTTAACCCTTCTCCCATTCA 57.054 40.909 2.48 0.00 0.00 2.57
1815 1862 2.775911 ATGCAGGACATATGGGATCG 57.224 50.000 7.80 0.00 37.17 3.69
1819 1866 3.195610 TGCAGGACATATGGGATCGTATC 59.804 47.826 7.80 0.00 0.00 2.24
1834 1881 1.393603 GTATCCTTTCCTTGCTGCCC 58.606 55.000 0.00 0.00 0.00 5.36
1876 1923 0.246757 GTTGTGTATCTCGCGCGTTG 60.247 55.000 30.98 22.78 0.00 4.10
1916 1963 0.764890 TCCCAACCTCACCTTCACAG 59.235 55.000 0.00 0.00 0.00 3.66
1917 1964 0.764890 CCCAACCTCACCTTCACAGA 59.235 55.000 0.00 0.00 0.00 3.41
1934 1981 1.376037 GAGGAAACACTCGGCCTGG 60.376 63.158 0.00 0.00 0.00 4.45
1956 2003 3.244976 CTGGAAATGCATGTCGAAAACC 58.755 45.455 10.80 0.00 0.00 3.27
1976 2023 2.287009 CCTGAACTTGCACGAACTTTCC 60.287 50.000 0.00 0.00 0.00 3.13
2001 2048 2.937799 ACAGAGTTTACCGCGTTTTGAA 59.062 40.909 4.92 0.00 0.00 2.69
2027 2074 3.353836 CGGGCGTTGGTGTGAAGG 61.354 66.667 0.00 0.00 0.00 3.46
2067 2114 4.019858 TGTGGTTCTGGTTTCAACATTCA 58.980 39.130 0.00 0.00 0.00 2.57
2131 2178 7.088905 GGATTGAAGAAGTCGTACTTTCAGTA 58.911 38.462 2.51 0.00 38.80 2.74
2154 2201 9.134055 AGTACCAATGGTATACTACTTTCTCTC 57.866 37.037 15.97 0.00 40.54 3.20
2198 2245 4.806892 TGGACATCAATGCCATCCTAAAT 58.193 39.130 3.10 0.00 31.96 1.40
2199 2246 5.951204 TGGACATCAATGCCATCCTAAATA 58.049 37.500 3.10 0.00 31.96 1.40
2200 2247 5.769662 TGGACATCAATGCCATCCTAAATAC 59.230 40.000 3.10 0.00 31.96 1.89
2281 2328 4.819105 TCTGGTACTGTGGAGGTATTTG 57.181 45.455 0.00 0.00 0.00 2.32
2288 2335 3.056749 ACTGTGGAGGTATTTGTCGAGAC 60.057 47.826 0.00 0.00 0.00 3.36
2387 3255 8.801715 TTTGAAATGTTTGACTCTATTCTTGC 57.198 30.769 0.00 0.00 0.00 4.01
2394 3262 7.871853 TGTTTGACTCTATTCTTGCCTAAAAC 58.128 34.615 0.00 0.00 0.00 2.43
2416 3284 1.414919 ACAGCACCGGAGAAAGTACAA 59.585 47.619 9.46 0.00 0.00 2.41
2419 3287 4.250464 CAGCACCGGAGAAAGTACAAATA 58.750 43.478 9.46 0.00 0.00 1.40
2551 3419 1.597854 CTGTTGCCGGACTTGCTCA 60.598 57.895 5.05 0.00 0.00 4.26
2607 3476 2.114616 CAGGAGATGAGTTAGGGTGCT 58.885 52.381 0.00 0.00 0.00 4.40
2609 3478 2.769095 AGGAGATGAGTTAGGGTGCTTC 59.231 50.000 0.00 0.00 0.00 3.86
2814 3683 5.552178 AGAAAGTTCCAGTTGGAGATGTAC 58.448 41.667 0.51 0.00 46.36 2.90
2839 3708 1.425066 AGTGAAGGACCTCCAAATGCA 59.575 47.619 0.00 0.00 38.89 3.96
2998 3868 6.488006 TGAAAGGATGGCTAGCAATAGATTTC 59.512 38.462 18.24 19.23 0.00 2.17
3006 3876 6.429078 TGGCTAGCAATAGATTTCATCATCAC 59.571 38.462 18.24 0.00 0.00 3.06
3007 3877 6.429078 GGCTAGCAATAGATTTCATCATCACA 59.571 38.462 18.24 0.00 0.00 3.58
3111 3981 2.028930 CCTCTACCTCAAGAACTTGCGT 60.029 50.000 9.38 9.91 40.24 5.24
3383 4253 4.402851 GCAGATGCCTGAACACCA 57.597 55.556 0.00 0.00 43.02 4.17
3574 4447 5.400066 TGCTAGATGCTACACAGTGTTAA 57.600 39.130 12.53 0.00 43.37 2.01
3578 4451 7.033791 GCTAGATGCTACACAGTGTTAAACTA 58.966 38.462 12.53 8.81 36.56 2.24
3703 4576 3.241678 CCGTCGCTATGCTATAAAATCGC 60.242 47.826 0.00 0.00 0.00 4.58
3758 4631 7.817641 TGGTAATGTTAAATGTTGCGTTGATA 58.182 30.769 0.00 0.00 0.00 2.15
3862 4735 7.439955 ACGAACATAATTGTGAGTGTTCTGTTA 59.560 33.333 9.40 0.00 44.98 2.41
3912 4785 7.607607 TGTGATCAAACTGTGAATATGCTACTT 59.392 33.333 0.00 0.00 40.50 2.24
3913 4786 7.907045 GTGATCAAACTGTGAATATGCTACTTG 59.093 37.037 0.00 0.00 40.50 3.16
3914 4787 6.182039 TCAAACTGTGAATATGCTACTTGC 57.818 37.500 0.00 0.00 36.18 4.01
3915 4788 5.123820 TCAAACTGTGAATATGCTACTTGCC 59.876 40.000 0.00 0.00 35.22 4.52
3916 4789 4.494091 ACTGTGAATATGCTACTTGCCT 57.506 40.909 0.00 0.00 42.00 4.75
3919 4792 3.455910 TGTGAATATGCTACTTGCCTCCT 59.544 43.478 0.00 0.00 42.00 3.69
3920 4793 4.080356 TGTGAATATGCTACTTGCCTCCTT 60.080 41.667 0.00 0.00 42.00 3.36
3936 4820 2.883386 CTCCTTTGCAGAACAGAGCTTT 59.117 45.455 0.00 0.00 0.00 3.51
3949 4833 3.243907 ACAGAGCTTTAGACACAGGACAC 60.244 47.826 0.00 0.00 0.00 3.67
3954 4838 1.419381 TTAGACACAGGACACAGGCA 58.581 50.000 0.00 0.00 0.00 4.75
3983 4867 0.112412 AGCGGGAGGTTTCATGGTTT 59.888 50.000 0.00 0.00 37.18 3.27
4018 4902 2.675348 GCTACAGACTTTGCTGGCTTAG 59.325 50.000 0.00 0.00 40.20 2.18
4021 4905 3.820557 ACAGACTTTGCTGGCTTAGAAA 58.179 40.909 0.00 0.00 40.20 2.52
4025 4909 4.068599 GACTTTGCTGGCTTAGAAAGTCT 58.931 43.478 19.62 0.00 42.48 3.24
4096 4981 3.916761 TCCATTGCTGCAAAGATGAAAC 58.083 40.909 20.06 0.00 0.00 2.78
4191 6064 6.684538 AGCCTTCTTCTTCCTCCTATTACTA 58.315 40.000 0.00 0.00 0.00 1.82
4225 6099 0.681243 GGGACATCTGCAAAGACCCC 60.681 60.000 8.41 3.79 32.18 4.95
4249 6123 5.304686 TGTTGTACCAGGATTTGAAGACT 57.695 39.130 0.00 0.00 0.00 3.24
4250 6124 5.063204 TGTTGTACCAGGATTTGAAGACTG 58.937 41.667 0.00 0.00 0.00 3.51
4283 6157 2.032377 CGCTCCTTGAGACGAGATCTAC 60.032 54.545 0.00 0.00 38.00 2.59
4303 6177 2.629137 ACAAATGGCTGAAGCAACATCA 59.371 40.909 4.43 0.00 44.36 3.07
4317 6191 3.430042 AACATCAGTTGGAGCATCACT 57.570 42.857 0.00 0.00 36.39 3.41
4330 6204 2.416547 AGCATCACTCAACGCAATACAC 59.583 45.455 0.00 0.00 0.00 2.90
4349 6223 2.421073 CACACTTGCAATCGATCACCAT 59.579 45.455 0.00 0.00 0.00 3.55
4351 6225 2.679336 CACTTGCAATCGATCACCATCA 59.321 45.455 0.00 0.00 0.00 3.07
4357 6231 3.002042 GCAATCGATCACCATCAGTTCAG 59.998 47.826 0.00 0.00 0.00 3.02
4370 6244 4.873746 TCAGTTCAGAGGGTTGTAGAAG 57.126 45.455 0.00 0.00 0.00 2.85
4383 6257 2.466846 TGTAGAAGCTAGACCATGCCA 58.533 47.619 0.00 0.00 0.00 4.92
4394 6268 1.001378 GACCATGCCACAGAACAACAC 60.001 52.381 0.00 0.00 0.00 3.32
4396 6270 0.943673 CATGCCACAGAACAACACGA 59.056 50.000 0.00 0.00 0.00 4.35
4406 6280 4.214437 CAGAACAACACGAAAGAAGATGC 58.786 43.478 0.00 0.00 0.00 3.91
4411 6285 4.393062 ACAACACGAAAGAAGATGCCATAG 59.607 41.667 0.00 0.00 0.00 2.23
4448 6323 4.749166 GCCAGCCAATATCTCTCCTTGAAT 60.749 45.833 0.00 0.00 0.00 2.57
4457 6332 4.115401 TCTCTCCTTGAATGACACATCG 57.885 45.455 0.00 0.00 0.00 3.84
4475 6350 5.122239 CACATCGTCTGCCAAGATCTAAAAA 59.878 40.000 0.00 0.00 34.13 1.94
4498 6374 1.407437 GCCAATAGTCTGGGGACACAG 60.407 57.143 0.00 0.00 44.36 3.66
4517 6393 2.164422 CAGACTCTCACATGCCTTCGTA 59.836 50.000 0.00 0.00 0.00 3.43
4519 6395 1.478510 ACTCTCACATGCCTTCGTAGG 59.521 52.381 3.26 3.26 45.02 3.18
4528 6406 2.106332 CTTCGTAGGCGCCGGATT 59.894 61.111 23.20 5.85 38.14 3.01
4553 6431 0.259065 TCGAGGTAGGCAGAGACCAT 59.741 55.000 0.00 0.00 38.27 3.55
4560 6438 2.836636 AGGCAGAGACCATAGAGACA 57.163 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.722700 CACCCCTGCCCCGTTCTG 62.723 72.222 0.00 0.00 0.00 3.02
18 19 3.316573 CTCCTTCCGCCTCCACCAC 62.317 68.421 0.00 0.00 0.00 4.16
96 97 2.124942 CCTCTTTGAGGCCCTCGC 60.125 66.667 6.21 0.00 43.29 5.03
104 105 0.035458 AAGCCCGTCACCTCTTTGAG 59.965 55.000 0.00 0.00 0.00 3.02
105 106 0.034896 GAAGCCCGTCACCTCTTTGA 59.965 55.000 0.00 0.00 0.00 2.69
106 107 0.955919 GGAAGCCCGTCACCTCTTTG 60.956 60.000 0.00 0.00 0.00 2.77
107 108 1.375326 GGAAGCCCGTCACCTCTTT 59.625 57.895 0.00 0.00 0.00 2.52
108 109 1.831652 CTGGAAGCCCGTCACCTCTT 61.832 60.000 0.00 0.00 34.29 2.85
109 110 2.203788 TGGAAGCCCGTCACCTCT 60.204 61.111 0.00 0.00 34.29 3.69
110 111 2.266055 CTGGAAGCCCGTCACCTC 59.734 66.667 0.00 0.00 34.29 3.85
111 112 3.322466 CCTGGAAGCCCGTCACCT 61.322 66.667 0.00 0.00 34.29 4.00
129 130 2.635443 ATCCAACAAAAGGCCGGCG 61.635 57.895 22.54 8.77 0.00 6.46
130 131 1.079888 CATCCAACAAAAGGCCGGC 60.080 57.895 21.18 21.18 0.00 6.13
131 132 1.591183 CCATCCAACAAAAGGCCGG 59.409 57.895 0.00 0.00 0.00 6.13
132 133 1.591183 CCCATCCAACAAAAGGCCG 59.409 57.895 0.00 0.00 0.00 6.13
133 134 1.194121 AGCCCATCCAACAAAAGGCC 61.194 55.000 0.00 0.00 41.42 5.19
134 135 0.037046 CAGCCCATCCAACAAAAGGC 60.037 55.000 0.00 0.00 40.79 4.35
135 136 1.341080 ACAGCCCATCCAACAAAAGG 58.659 50.000 0.00 0.00 0.00 3.11
136 137 4.463891 AGAATACAGCCCATCCAACAAAAG 59.536 41.667 0.00 0.00 0.00 2.27
137 138 4.220382 CAGAATACAGCCCATCCAACAAAA 59.780 41.667 0.00 0.00 0.00 2.44
138 139 3.763360 CAGAATACAGCCCATCCAACAAA 59.237 43.478 0.00 0.00 0.00 2.83
139 140 3.245229 ACAGAATACAGCCCATCCAACAA 60.245 43.478 0.00 0.00 0.00 2.83
140 141 2.308570 ACAGAATACAGCCCATCCAACA 59.691 45.455 0.00 0.00 0.00 3.33
141 142 2.684881 CACAGAATACAGCCCATCCAAC 59.315 50.000 0.00 0.00 0.00 3.77
142 143 2.945440 GCACAGAATACAGCCCATCCAA 60.945 50.000 0.00 0.00 0.00 3.53
143 144 1.408683 GCACAGAATACAGCCCATCCA 60.409 52.381 0.00 0.00 0.00 3.41
144 145 1.312815 GCACAGAATACAGCCCATCC 58.687 55.000 0.00 0.00 0.00 3.51
145 146 0.940126 CGCACAGAATACAGCCCATC 59.060 55.000 0.00 0.00 0.00 3.51
146 147 0.541392 TCGCACAGAATACAGCCCAT 59.459 50.000 0.00 0.00 0.00 4.00
147 148 0.323302 TTCGCACAGAATACAGCCCA 59.677 50.000 0.00 0.00 33.14 5.36
148 149 0.727398 GTTCGCACAGAATACAGCCC 59.273 55.000 0.00 0.00 41.49 5.19
149 150 1.726853 AGTTCGCACAGAATACAGCC 58.273 50.000 0.00 0.00 41.49 4.85
150 151 2.726066 GCAAGTTCGCACAGAATACAGC 60.726 50.000 0.00 0.00 41.49 4.40
151 152 2.738846 AGCAAGTTCGCACAGAATACAG 59.261 45.455 0.00 0.00 41.49 2.74
152 153 2.480037 CAGCAAGTTCGCACAGAATACA 59.520 45.455 0.00 0.00 41.49 2.29
153 154 2.480419 ACAGCAAGTTCGCACAGAATAC 59.520 45.455 0.00 0.00 41.49 1.89
154 155 2.736721 GACAGCAAGTTCGCACAGAATA 59.263 45.455 0.00 0.00 41.49 1.75
155 156 1.532868 GACAGCAAGTTCGCACAGAAT 59.467 47.619 0.00 0.00 41.49 2.40
156 157 0.937304 GACAGCAAGTTCGCACAGAA 59.063 50.000 0.00 0.00 36.31 3.02
157 158 1.215014 CGACAGCAAGTTCGCACAGA 61.215 55.000 0.00 0.00 0.00 3.41
158 159 1.202568 CGACAGCAAGTTCGCACAG 59.797 57.895 0.00 0.00 0.00 3.66
159 160 2.243957 CCGACAGCAAGTTCGCACA 61.244 57.895 0.00 0.00 0.00 4.57
160 161 2.551270 CCGACAGCAAGTTCGCAC 59.449 61.111 0.00 0.00 0.00 5.34
161 162 2.664851 CCCGACAGCAAGTTCGCA 60.665 61.111 0.00 0.00 0.00 5.10
162 163 4.090057 GCCCGACAGCAAGTTCGC 62.090 66.667 0.00 0.00 0.00 4.70
163 164 1.080093 TAGCCCGACAGCAAGTTCG 60.080 57.895 0.00 0.00 34.23 3.95
164 165 1.352156 CGTAGCCCGACAGCAAGTTC 61.352 60.000 0.00 0.00 39.56 3.01
165 166 1.374252 CGTAGCCCGACAGCAAGTT 60.374 57.895 0.00 0.00 39.56 2.66
166 167 2.261671 CGTAGCCCGACAGCAAGT 59.738 61.111 0.00 0.00 39.56 3.16
167 168 2.509336 CCGTAGCCCGACAGCAAG 60.509 66.667 0.00 0.00 39.56 4.01
168 169 4.752879 GCCGTAGCCCGACAGCAA 62.753 66.667 0.00 0.00 39.56 3.91
178 179 0.248784 CTAACTACACGGGCCGTAGC 60.249 60.000 33.65 0.00 40.03 3.58
179 180 1.332997 CTCTAACTACACGGGCCGTAG 59.667 57.143 33.65 27.92 38.32 3.51
180 181 1.382522 CTCTAACTACACGGGCCGTA 58.617 55.000 33.65 17.09 38.32 4.02
181 182 1.318158 CCTCTAACTACACGGGCCGT 61.318 60.000 28.83 28.83 42.36 5.68
182 183 1.436336 CCTCTAACTACACGGGCCG 59.564 63.158 27.06 27.06 0.00 6.13
183 184 1.143401 GCCTCTAACTACACGGGCC 59.857 63.158 0.00 0.00 34.19 5.80
184 185 1.143401 GGCCTCTAACTACACGGGC 59.857 63.158 0.00 0.00 38.92 6.13
185 186 0.460311 CAGGCCTCTAACTACACGGG 59.540 60.000 0.00 0.00 0.00 5.28
186 187 0.179108 GCAGGCCTCTAACTACACGG 60.179 60.000 0.00 0.00 0.00 4.94
187 188 0.818296 AGCAGGCCTCTAACTACACG 59.182 55.000 0.00 0.00 0.00 4.49
188 189 1.202313 CGAGCAGGCCTCTAACTACAC 60.202 57.143 0.00 0.00 38.49 2.90
189 190 1.103803 CGAGCAGGCCTCTAACTACA 58.896 55.000 0.00 0.00 38.49 2.74
190 191 0.386113 CCGAGCAGGCCTCTAACTAC 59.614 60.000 0.00 0.00 38.49 2.73
191 192 0.033405 ACCGAGCAGGCCTCTAACTA 60.033 55.000 0.00 0.00 46.52 2.24
192 193 0.033405 TACCGAGCAGGCCTCTAACT 60.033 55.000 0.00 0.00 46.52 2.24
193 194 0.386113 CTACCGAGCAGGCCTCTAAC 59.614 60.000 0.00 0.00 46.52 2.34
194 195 0.033405 ACTACCGAGCAGGCCTCTAA 60.033 55.000 0.00 0.00 46.52 2.10
195 196 0.033405 AACTACCGAGCAGGCCTCTA 60.033 55.000 0.00 0.00 46.52 2.43
196 197 1.305381 AACTACCGAGCAGGCCTCT 60.305 57.895 0.00 2.73 46.52 3.69
197 198 1.142097 GAACTACCGAGCAGGCCTC 59.858 63.158 0.00 0.00 46.52 4.70
198 199 1.305381 AGAACTACCGAGCAGGCCT 60.305 57.895 0.00 0.00 46.52 5.19
199 200 1.142097 GAGAACTACCGAGCAGGCC 59.858 63.158 0.00 0.00 46.52 5.19
200 201 1.226717 CGAGAACTACCGAGCAGGC 60.227 63.158 0.00 0.00 46.52 4.85
202 203 0.522180 ACACGAGAACTACCGAGCAG 59.478 55.000 0.00 0.00 0.00 4.24
203 204 1.812235 TACACGAGAACTACCGAGCA 58.188 50.000 0.00 0.00 0.00 4.26
204 205 2.161211 ACTTACACGAGAACTACCGAGC 59.839 50.000 0.00 0.00 0.00 5.03
205 206 5.731599 ATACTTACACGAGAACTACCGAG 57.268 43.478 0.00 0.00 0.00 4.63
206 207 7.041780 GGATAATACTTACACGAGAACTACCGA 60.042 40.741 0.00 0.00 0.00 4.69
207 208 7.074502 GGATAATACTTACACGAGAACTACCG 58.925 42.308 0.00 0.00 0.00 4.02
208 209 7.934457 TGGATAATACTTACACGAGAACTACC 58.066 38.462 0.00 0.00 0.00 3.18
209 210 9.793252 TTTGGATAATACTTACACGAGAACTAC 57.207 33.333 0.00 0.00 0.00 2.73
211 212 9.715121 TTTTTGGATAATACTTACACGAGAACT 57.285 29.630 0.00 0.00 0.00 3.01
240 241 4.003648 GGGTCGACATGAGATGAGTTTTT 58.996 43.478 18.91 0.00 0.00 1.94
241 242 3.261897 AGGGTCGACATGAGATGAGTTTT 59.738 43.478 18.91 0.00 0.00 2.43
242 243 2.834549 AGGGTCGACATGAGATGAGTTT 59.165 45.455 18.91 0.00 0.00 2.66
243 244 2.461695 AGGGTCGACATGAGATGAGTT 58.538 47.619 18.91 0.00 0.00 3.01
244 245 2.151502 AGGGTCGACATGAGATGAGT 57.848 50.000 18.91 0.00 0.00 3.41
245 246 3.481453 TCTAGGGTCGACATGAGATGAG 58.519 50.000 18.91 2.84 0.00 2.90
246 247 3.577805 TCTAGGGTCGACATGAGATGA 57.422 47.619 18.91 3.03 0.00 2.92
247 248 5.249420 TCTATCTAGGGTCGACATGAGATG 58.751 45.833 24.40 17.50 0.00 2.90
248 249 5.496556 CTCTATCTAGGGTCGACATGAGAT 58.503 45.833 18.91 20.62 0.00 2.75
249 250 4.804597 GCTCTATCTAGGGTCGACATGAGA 60.805 50.000 18.91 15.42 0.00 3.27
250 251 3.438781 GCTCTATCTAGGGTCGACATGAG 59.561 52.174 18.91 10.45 0.00 2.90
251 252 3.413327 GCTCTATCTAGGGTCGACATGA 58.587 50.000 18.91 9.45 0.00 3.07
252 253 2.160615 CGCTCTATCTAGGGTCGACATG 59.839 54.545 18.91 4.02 0.00 3.21
253 254 2.038689 TCGCTCTATCTAGGGTCGACAT 59.961 50.000 18.91 7.85 31.10 3.06
254 255 1.415289 TCGCTCTATCTAGGGTCGACA 59.585 52.381 18.91 0.00 31.10 4.35
255 256 2.070783 CTCGCTCTATCTAGGGTCGAC 58.929 57.143 7.13 7.13 32.13 4.20
256 257 1.608542 GCTCGCTCTATCTAGGGTCGA 60.609 57.143 0.00 4.42 33.59 4.20
257 258 0.800012 GCTCGCTCTATCTAGGGTCG 59.200 60.000 0.00 0.00 0.00 4.79
258 259 0.800012 CGCTCGCTCTATCTAGGGTC 59.200 60.000 0.00 0.00 0.00 4.46
259 260 0.397187 TCGCTCGCTCTATCTAGGGT 59.603 55.000 0.00 0.00 0.00 4.34
260 261 1.083489 CTCGCTCGCTCTATCTAGGG 58.917 60.000 0.00 0.00 0.00 3.53
261 262 0.446222 GCTCGCTCGCTCTATCTAGG 59.554 60.000 0.00 0.00 0.00 3.02
262 263 0.094558 CGCTCGCTCGCTCTATCTAG 59.905 60.000 0.00 0.00 0.00 2.43
263 264 0.319641 TCGCTCGCTCGCTCTATCTA 60.320 55.000 0.00 0.00 0.00 1.98
264 265 1.565156 CTCGCTCGCTCGCTCTATCT 61.565 60.000 0.00 0.00 0.00 1.98
265 266 1.154488 CTCGCTCGCTCGCTCTATC 60.154 63.158 0.00 0.00 0.00 2.08
266 267 2.942879 CTCGCTCGCTCGCTCTAT 59.057 61.111 0.00 0.00 0.00 1.98
267 268 3.943034 GCTCGCTCGCTCGCTCTA 61.943 66.667 0.00 0.00 0.00 2.43
273 274 4.135153 TCCCTTGCTCGCTCGCTC 62.135 66.667 0.00 0.00 0.00 5.03
274 275 4.140599 CTCCCTTGCTCGCTCGCT 62.141 66.667 0.00 0.00 0.00 4.93
294 295 2.446036 ATACCTCCTGGGGTCGGC 60.446 66.667 9.73 0.00 40.48 5.54
295 296 2.201022 CGATACCTCCTGGGGTCGG 61.201 68.421 9.73 1.22 40.86 4.79
296 297 2.857744 GCGATACCTCCTGGGGTCG 61.858 68.421 9.73 5.51 44.47 4.79
297 298 2.508751 GGCGATACCTCCTGGGGTC 61.509 68.421 9.73 0.00 40.48 4.46
298 299 2.446036 GGCGATACCTCCTGGGGT 60.446 66.667 10.99 10.99 42.86 4.95
299 300 3.616721 CGGCGATACCTCCTGGGG 61.617 72.222 0.00 0.00 40.03 4.96
300 301 4.301027 GCGGCGATACCTCCTGGG 62.301 72.222 12.98 0.00 41.89 4.45
301 302 4.647615 CGCGGCGATACCTCCTGG 62.648 72.222 19.16 0.00 35.61 4.45
328 329 4.849310 CCCATGGTACCACGGCGG 62.849 72.222 21.94 16.46 42.50 6.13
329 330 4.849310 CCCCATGGTACCACGGCG 62.849 72.222 21.94 9.65 0.00 6.46
331 332 3.407967 AGCCCCATGGTACCACGG 61.408 66.667 20.45 20.45 0.00 4.94
332 333 2.124736 CAGCCCCATGGTACCACG 60.125 66.667 19.09 9.42 0.00 4.94
333 334 1.077716 GTCAGCCCCATGGTACCAC 60.078 63.158 19.09 3.71 0.00 4.16
334 335 2.305607 GGTCAGCCCCATGGTACCA 61.306 63.158 18.99 18.99 33.64 3.25
335 336 2.595655 GGTCAGCCCCATGGTACC 59.404 66.667 11.73 4.43 0.00 3.34
345 346 4.222847 GACGGGATCGGGTCAGCC 62.223 72.222 9.23 0.00 41.39 4.85
362 363 4.760047 AGGCGGCAGCTTACCACG 62.760 66.667 13.08 0.00 44.37 4.94
385 386 2.184830 CGTAGACGCGATGAGGGGA 61.185 63.158 15.93 0.00 37.07 4.81
398 399 3.934457 TGCACAAGATCAGAACGTAGA 57.066 42.857 0.00 0.00 0.00 2.59
401 402 2.942376 TGTTTGCACAAGATCAGAACGT 59.058 40.909 0.00 0.00 0.00 3.99
422 423 1.217057 ACCATCTCCAACAGGGGCAT 61.217 55.000 0.00 0.00 37.22 4.40
425 426 1.210478 CAGTACCATCTCCAACAGGGG 59.790 57.143 0.00 0.00 37.22 4.79
433 434 2.205074 CGCATGTTCAGTACCATCTCC 58.795 52.381 0.00 0.00 0.00 3.71
469 471 3.068024 TGGCATGAGTTGACAAGAAAACC 59.932 43.478 0.00 0.00 41.69 3.27
485 487 1.265095 GATAGTGCGGACATTGGCATG 59.735 52.381 10.52 0.00 41.83 4.06
489 491 1.875514 CATGGATAGTGCGGACATTGG 59.124 52.381 10.52 0.00 0.00 3.16
497 499 1.070601 TGGATGGTCATGGATAGTGCG 59.929 52.381 0.00 0.00 0.00 5.34
522 524 3.112075 CGTACCTGCAGCACACCG 61.112 66.667 8.66 1.61 0.00 4.94
525 527 1.873270 ATCGACGTACCTGCAGCACA 61.873 55.000 8.66 0.00 0.00 4.57
567 569 2.664851 TTGTTGACAGGGCGAGCG 60.665 61.111 0.00 0.00 0.00 5.03
632 634 1.562783 AGACTCCCCCTTTTCTCTCG 58.437 55.000 0.00 0.00 0.00 4.04
782 784 6.438425 TCGGTAGTTGGACTTAGAGGTTTAAT 59.562 38.462 0.00 0.00 0.00 1.40
881 883 4.254721 GCAGATGGCAGCAGGAAT 57.745 55.556 5.19 0.00 43.97 3.01
927 929 1.699083 TCCAGCAACAGGAGATTGTCA 59.301 47.619 0.00 0.00 0.00 3.58
959 961 0.615331 CCTGTGTAGACCATGGCTGT 59.385 55.000 13.04 0.00 0.00 4.40
1004 1006 4.729868 ACTTACAGGTGCTTGGAGAAATT 58.270 39.130 0.00 0.00 0.00 1.82
1179 1182 8.761575 ACATTGTTTAGCTACAAAAATCATGG 57.238 30.769 6.17 0.00 41.02 3.66
1194 1197 8.280497 ACGACAAAGCTAAGTTACATTGTTTAG 58.720 33.333 0.00 0.00 31.68 1.85
1197 1200 6.563381 CGACGACAAAGCTAAGTTACATTGTT 60.563 38.462 0.00 0.00 31.68 2.83
1198 1201 5.107607 CGACGACAAAGCTAAGTTACATTGT 60.108 40.000 0.00 0.00 34.01 2.71
1199 1202 5.107607 ACGACGACAAAGCTAAGTTACATTG 60.108 40.000 0.00 0.00 0.00 2.82
1212 1215 0.859232 CAGTCCCAACGACGACAAAG 59.141 55.000 0.00 0.00 46.92 2.77
1214 1217 0.677288 ATCAGTCCCAACGACGACAA 59.323 50.000 0.00 0.00 46.92 3.18
1218 1221 0.037697 TTGGATCAGTCCCAACGACG 60.038 55.000 0.00 0.00 46.92 5.12
1240 1243 6.057627 GATTAGTCAAATCGAGTAGTCGGA 57.942 41.667 19.43 6.35 46.80 4.55
1251 1260 8.391106 AGCATAGTTCAAACGATTAGTCAAATC 58.609 33.333 0.00 0.00 40.63 2.17
1259 1268 5.522460 GCCAGTAGCATAGTTCAAACGATTA 59.478 40.000 0.00 0.00 42.97 1.75
1263 1272 3.658351 GCCAGTAGCATAGTTCAAACG 57.342 47.619 0.00 0.00 42.97 3.60
1281 1290 7.215719 ACTTTTCCACAACTAAGATTTAGCC 57.784 36.000 0.00 0.00 0.00 3.93
1287 1296 7.661847 CCTGAACTACTTTTCCACAACTAAGAT 59.338 37.037 0.00 0.00 0.00 2.40
1289 1298 6.990349 TCCTGAACTACTTTTCCACAACTAAG 59.010 38.462 0.00 0.00 0.00 2.18
1291 1300 6.488769 TCCTGAACTACTTTTCCACAACTA 57.511 37.500 0.00 0.00 0.00 2.24
1319 1328 9.415008 TCTAAGCTCTCTAAGAAGATACACATT 57.585 33.333 0.00 0.00 0.00 2.71
1321 1330 8.809468 TTCTAAGCTCTCTAAGAAGATACACA 57.191 34.615 0.00 0.00 0.00 3.72
1370 1387 9.468532 GCTCAAGTTCATGAAAAGTTAAATCTT 57.531 29.630 10.35 3.13 0.00 2.40
1371 1388 8.632679 TGCTCAAGTTCATGAAAAGTTAAATCT 58.367 29.630 10.35 0.00 0.00 2.40
1372 1389 8.801715 TGCTCAAGTTCATGAAAAGTTAAATC 57.198 30.769 10.35 0.00 0.00 2.17
1373 1390 9.598517 TTTGCTCAAGTTCATGAAAAGTTAAAT 57.401 25.926 10.35 0.00 0.00 1.40
1375 1392 8.994429 TTTTGCTCAAGTTCATGAAAAGTTAA 57.006 26.923 10.35 3.73 0.00 2.01
1376 1393 8.250332 ACTTTTGCTCAAGTTCATGAAAAGTTA 58.750 29.630 10.35 0.00 35.75 2.24
1377 1394 7.063780 CACTTTTGCTCAAGTTCATGAAAAGTT 59.936 33.333 10.35 1.41 36.49 2.66
1384 1401 6.415867 CAGTAACACTTTTGCTCAAGTTCATG 59.584 38.462 0.00 0.00 34.60 3.07
1387 1404 5.065988 TCCAGTAACACTTTTGCTCAAGTTC 59.934 40.000 0.00 0.00 34.60 3.01
1398 1415 5.891551 ACCTTGAACAATCCAGTAACACTTT 59.108 36.000 0.00 0.00 0.00 2.66
1485 1524 6.351456 GCATAATAGATCCTCTAGTGGGAACC 60.351 46.154 10.89 6.59 40.21 3.62
1491 1530 7.701539 AGACAGCATAATAGATCCTCTAGTG 57.298 40.000 0.00 0.00 31.67 2.74
1499 1543 9.319143 ACTTGTTTGTAGACAGCATAATAGATC 57.681 33.333 0.00 0.00 0.00 2.75
1512 1556 9.760660 CATGCTATTCTTTACTTGTTTGTAGAC 57.239 33.333 0.00 0.00 0.00 2.59
1517 1561 7.862372 ACACACATGCTATTCTTTACTTGTTTG 59.138 33.333 0.00 0.00 0.00 2.93
1518 1562 7.862372 CACACACATGCTATTCTTTACTTGTTT 59.138 33.333 0.00 0.00 0.00 2.83
1534 1578 0.451383 ACACACACACACACACATGC 59.549 50.000 0.00 0.00 0.00 4.06
1537 1581 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1542 1586 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1544 1588 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1546 1590 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1548 1592 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1549 1593 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1550 1594 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
1551 1595 2.106477 ATCACACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
1552 1596 4.526625 CAATATCACACACACACACACAC 58.473 43.478 0.00 0.00 0.00 3.82
1553 1597 3.003171 GCAATATCACACACACACACACA 59.997 43.478 0.00 0.00 0.00 3.72
1554 1598 3.554524 GCAATATCACACACACACACAC 58.445 45.455 0.00 0.00 0.00 3.82
1555 1599 2.551887 GGCAATATCACACACACACACA 59.448 45.455 0.00 0.00 0.00 3.72
1556 1600 2.551887 TGGCAATATCACACACACACAC 59.448 45.455 0.00 0.00 0.00 3.82
1557 1601 2.856222 TGGCAATATCACACACACACA 58.144 42.857 0.00 0.00 0.00 3.72
1558 1602 3.564511 GTTGGCAATATCACACACACAC 58.435 45.455 1.92 0.00 0.00 3.82
1559 1603 2.556189 GGTTGGCAATATCACACACACA 59.444 45.455 1.92 0.00 0.00 3.72
1560 1604 2.556189 TGGTTGGCAATATCACACACAC 59.444 45.455 1.92 0.00 0.00 3.82
1561 1605 2.819019 CTGGTTGGCAATATCACACACA 59.181 45.455 1.92 0.00 0.00 3.72
1562 1606 2.819608 ACTGGTTGGCAATATCACACAC 59.180 45.455 1.92 0.00 0.00 3.82
1569 1613 3.084039 CAGTGTCACTGGTTGGCAATAT 58.916 45.455 23.09 0.00 43.07 1.28
1570 1614 2.503331 CAGTGTCACTGGTTGGCAATA 58.497 47.619 23.09 0.00 43.07 1.90
1582 1626 0.391597 TCTTTCCCCGACAGTGTCAC 59.608 55.000 22.66 0.00 32.09 3.67
1657 1701 6.033619 GTGTGCTAGAACATTACAGAGTAACG 59.966 42.308 6.88 0.00 31.49 3.18
1663 1707 6.726258 CATTGTGTGCTAGAACATTACAGA 57.274 37.500 6.88 0.00 31.49 3.41
1686 1730 4.996434 ACGCCAGGTGCTCAGTGC 62.996 66.667 0.00 0.00 43.25 4.40
1687 1731 3.046087 CACGCCAGGTGCTCAGTG 61.046 66.667 0.00 0.00 40.33 3.66
1699 1743 1.225855 TGAAGTTGACATGACACGCC 58.774 50.000 0.00 0.00 0.00 5.68
1766 1812 4.946160 ATGGGAGAAGGGTTAACATTCA 57.054 40.909 19.21 5.45 0.00 2.57
1767 1813 5.261216 TGAATGGGAGAAGGGTTAACATTC 58.739 41.667 8.10 10.78 41.64 2.67
1777 1824 3.567164 GCATACACATGAATGGGAGAAGG 59.433 47.826 0.00 0.00 34.60 3.46
1790 1837 3.652387 TCCCATATGTCCTGCATACACAT 59.348 43.478 1.24 7.23 42.28 3.21
1815 1862 1.393603 GGGCAGCAAGGAAAGGATAC 58.606 55.000 0.00 0.00 0.00 2.24
1819 1866 1.980772 CAGGGGCAGCAAGGAAAGG 60.981 63.158 0.00 0.00 0.00 3.11
1876 1923 1.154197 GGCGTGTCCAGGAACTTAAC 58.846 55.000 0.00 0.00 34.60 2.01
1916 1963 1.376037 CCAGGCCGAGTGTTTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
1917 1964 2.750350 CCAGGCCGAGTGTTTCCT 59.250 61.111 0.00 0.00 0.00 3.36
1934 1981 2.634982 TTTCGACATGCATTTCCAGC 57.365 45.000 7.26 0.00 0.00 4.85
1956 2003 2.354510 TGGAAAGTTCGTGCAAGTTCAG 59.645 45.455 0.00 0.00 0.00 3.02
1976 2023 3.328237 AACGCGGTAAACTCTGTTTTG 57.672 42.857 12.47 0.00 0.00 2.44
2001 2048 1.033202 ACCAACGCCCGAGTGTTTTT 61.033 50.000 0.00 0.00 44.23 1.94
2027 2074 3.499048 CACAGTGATGAAGCTTGAATGC 58.501 45.455 2.10 0.00 0.00 3.56
2067 2114 2.306805 TGAAGCCACCTGTTCAGATCAT 59.693 45.455 1.00 0.00 0.00 2.45
2131 2178 6.606395 ACGAGAGAAAGTAGTATACCATTGGT 59.394 38.462 13.94 13.94 44.47 3.67
2154 2201 5.163913 CCAGAACAATAGCTTTCAGAAGACG 60.164 44.000 0.00 0.00 34.71 4.18
2254 2301 5.836024 ACCTCCACAGTACCAGAATTTTA 57.164 39.130 0.00 0.00 0.00 1.52
2256 2303 6.388619 AATACCTCCACAGTACCAGAATTT 57.611 37.500 0.00 0.00 0.00 1.82
2262 2309 3.056393 CGACAAATACCTCCACAGTACCA 60.056 47.826 0.00 0.00 0.00 3.25
2267 2314 3.056821 TGTCTCGACAAATACCTCCACAG 60.057 47.826 0.00 0.00 38.56 3.66
2281 2328 9.335891 CTATCATATATGTGAACTTGTCTCGAC 57.664 37.037 12.42 0.00 0.00 4.20
2321 2368 9.699410 ATCTCCACAAATAGTTGGATTGAATAA 57.301 29.630 7.93 0.00 39.22 1.40
2387 3255 0.320073 TCCGGTGCTGTCGTTTTAGG 60.320 55.000 0.00 0.00 0.00 2.69
2394 3262 0.242825 TACTTTCTCCGGTGCTGTCG 59.757 55.000 0.00 0.00 0.00 4.35
2416 3284 1.397390 CCCGTAGTGAGGCCCGTATT 61.397 60.000 0.00 0.00 0.00 1.89
2419 3287 3.286694 TACCCGTAGTGAGGCCCGT 62.287 63.158 0.00 0.00 0.00 5.28
2551 3419 1.202855 ACAGATGCAGCCTTGTCAAGT 60.203 47.619 11.61 0.00 0.00 3.16
2607 3476 8.877864 TCCATAGCAAAAGAATTAGAAAGGAA 57.122 30.769 0.00 0.00 0.00 3.36
2609 3478 7.557719 TCCTCCATAGCAAAAGAATTAGAAAGG 59.442 37.037 0.00 0.00 0.00 3.11
2814 3683 0.397941 TGGAGGTCCTTCACTTGCAG 59.602 55.000 0.00 0.00 36.82 4.41
2839 3708 6.708285 ACAAGGTTAGATTCGTAACAATCCT 58.292 36.000 0.00 0.00 35.00 3.24
2961 3830 6.721318 AGCCATCCTTTCAAAGTACTAATGA 58.279 36.000 0.00 1.08 0.00 2.57
2998 3868 7.822658 TGCCATATGAATAATGTGTGATGATG 58.177 34.615 3.65 0.00 0.00 3.07
3038 3908 4.655649 ACACCTGCATAGATATGTCAAGGA 59.344 41.667 17.75 0.00 35.90 3.36
3078 3948 3.055094 TGAGGTAGAGGAATTTGACAGGC 60.055 47.826 0.00 0.00 0.00 4.85
3111 3981 7.508687 TCATCCCTCGATCATGAAGAAAAATA 58.491 34.615 0.00 0.00 0.00 1.40
3375 4245 0.754587 TGTTGCCATGCTGGTGTTCA 60.755 50.000 4.45 0.00 40.46 3.18
3383 4253 2.829720 ACATTCTTGATGTTGCCATGCT 59.170 40.909 0.00 0.00 46.80 3.79
3648 4521 7.444183 AGCTTGTTAACATTTAGCTTGACTGTA 59.556 33.333 22.03 0.00 34.86 2.74
3651 4524 6.486657 TGAGCTTGTTAACATTTAGCTTGACT 59.513 34.615 26.21 10.63 37.60 3.41
3729 4602 6.740110 ACGCAACATTTAACATTACCAGAAA 58.260 32.000 0.00 0.00 0.00 2.52
3731 4604 5.950758 ACGCAACATTTAACATTACCAGA 57.049 34.783 0.00 0.00 0.00 3.86
3758 4631 8.012957 ACAATAGATTCAAGTTACGAGATCCT 57.987 34.615 0.00 0.00 0.00 3.24
3883 4756 5.509272 GCATATTCACAGTTTGATCACAACG 59.491 40.000 0.00 3.66 35.63 4.10
3912 4785 0.473755 TCTGTTCTGCAAAGGAGGCA 59.526 50.000 0.00 0.00 39.32 4.75
3913 4786 1.163554 CTCTGTTCTGCAAAGGAGGC 58.836 55.000 0.00 0.00 0.00 4.70
3914 4787 1.163554 GCTCTGTTCTGCAAAGGAGG 58.836 55.000 0.00 0.00 0.00 4.30
3915 4788 2.181954 AGCTCTGTTCTGCAAAGGAG 57.818 50.000 0.00 0.00 0.00 3.69
3916 4789 2.645838 AAGCTCTGTTCTGCAAAGGA 57.354 45.000 0.00 0.00 0.00 3.36
3919 4792 4.273480 GTGTCTAAAGCTCTGTTCTGCAAA 59.727 41.667 0.00 0.00 0.00 3.68
3920 4793 3.809832 GTGTCTAAAGCTCTGTTCTGCAA 59.190 43.478 0.00 0.00 0.00 4.08
3936 4820 0.969149 CTGCCTGTGTCCTGTGTCTA 59.031 55.000 0.00 0.00 0.00 2.59
3961 4845 1.026718 CCATGAAACCTCCCGCTCAC 61.027 60.000 0.00 0.00 0.00 3.51
4018 4902 5.606505 GTCTTCATATCCAGGGAGACTTTC 58.393 45.833 0.00 0.00 0.00 2.62
4021 4905 3.117474 TCGTCTTCATATCCAGGGAGACT 60.117 47.826 0.00 0.00 0.00 3.24
4025 4909 2.317040 GGTCGTCTTCATATCCAGGGA 58.683 52.381 0.00 0.00 0.00 4.20
4119 5485 7.079451 TCAGATCTAAGGGTGTCTTTTCTTT 57.921 36.000 0.00 0.00 36.93 2.52
4153 5690 7.200434 AGAAGAAGGCTAGTATGATTTCCAA 57.800 36.000 0.00 0.00 0.00 3.53
4154 5691 6.814954 AGAAGAAGGCTAGTATGATTTCCA 57.185 37.500 0.00 0.00 0.00 3.53
4155 5692 6.708502 GGAAGAAGAAGGCTAGTATGATTTCC 59.291 42.308 0.00 0.00 0.00 3.13
4156 5693 7.505258 AGGAAGAAGAAGGCTAGTATGATTTC 58.495 38.462 0.00 0.00 0.00 2.17
4172 6042 7.874252 ACTGTCTAGTAATAGGAGGAAGAAGA 58.126 38.462 0.00 0.00 34.74 2.87
4191 6064 6.234177 CAGATGTCCCTTTTCTTTACTGTCT 58.766 40.000 0.00 0.00 0.00 3.41
4225 6099 5.765182 AGTCTTCAAATCCTGGTACAACAAG 59.235 40.000 0.00 0.00 38.70 3.16
4249 6123 1.186200 AGGAGCGAGTGACTATTGCA 58.814 50.000 6.70 0.00 0.00 4.08
4250 6124 1.929836 CAAGGAGCGAGTGACTATTGC 59.070 52.381 0.00 0.00 0.00 3.56
4265 6139 5.163509 CCATTTGTAGATCTCGTCTCAAGGA 60.164 44.000 0.00 0.00 38.42 3.36
4283 6157 3.250744 CTGATGTTGCTTCAGCCATTTG 58.749 45.455 0.00 0.00 41.18 2.32
4303 6177 1.800805 CGTTGAGTGATGCTCCAACT 58.199 50.000 0.00 0.00 43.48 3.16
4317 6191 2.679355 GCAAGTGTGTATTGCGTTGA 57.321 45.000 0.00 0.00 43.15 3.18
4325 6199 3.623060 GGTGATCGATTGCAAGTGTGTAT 59.377 43.478 4.94 0.00 0.00 2.29
4330 6204 2.679336 TGATGGTGATCGATTGCAAGTG 59.321 45.455 4.94 0.00 0.00 3.16
4341 6215 2.503356 ACCCTCTGAACTGATGGTGATC 59.497 50.000 7.55 0.00 34.46 2.92
4349 6223 3.006967 GCTTCTACAACCCTCTGAACTGA 59.993 47.826 0.00 0.00 0.00 3.41
4351 6225 3.243724 AGCTTCTACAACCCTCTGAACT 58.756 45.455 0.00 0.00 0.00 3.01
4357 6231 3.097614 TGGTCTAGCTTCTACAACCCTC 58.902 50.000 0.00 0.00 0.00 4.30
4370 6244 1.339055 TGTTCTGTGGCATGGTCTAGC 60.339 52.381 0.00 0.00 0.00 3.42
4383 6257 4.260784 GCATCTTCTTTCGTGTTGTTCTGT 60.261 41.667 0.00 0.00 0.00 3.41
4394 6268 2.219674 GCGACTATGGCATCTTCTTTCG 59.780 50.000 1.65 5.67 0.00 3.46
4396 6270 2.205074 CGCGACTATGGCATCTTCTTT 58.795 47.619 1.65 0.00 0.00 2.52
4406 6280 1.139989 CTATTGGTGCGCGACTATGG 58.860 55.000 12.10 0.00 0.00 2.74
4411 6285 2.813179 CTGGCTATTGGTGCGCGAC 61.813 63.158 12.10 5.05 0.00 5.19
4457 6332 4.095632 GGCTCTTTTTAGATCTTGGCAGAC 59.904 45.833 0.00 0.00 0.00 3.51
4475 6350 1.273838 TGTCCCCAGACTATTGGCTCT 60.274 52.381 0.00 0.00 43.91 4.09
4498 6374 2.480416 CCTACGAAGGCATGTGAGAGTC 60.480 54.545 0.00 0.00 35.64 3.36
4528 6406 2.364973 TGCCTACCTCGATGCCCA 60.365 61.111 0.00 0.00 0.00 5.36
4531 6409 0.031449 GTCTCTGCCTACCTCGATGC 59.969 60.000 0.00 0.00 0.00 3.91
4553 6431 4.081365 TGGCGTGTTGGAATAATGTCTCTA 60.081 41.667 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.