Multiple sequence alignment - TraesCS5B01G263700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G263700 chr5B 100.000 4254 0 0 1 4254 448133821 448129568 0.000000e+00 7856
1 TraesCS5B01G263700 chr5B 83.594 256 34 4 478 731 448217415 448217664 2.560000e-57 233
2 TraesCS5B01G263700 chr5B 85.946 185 25 1 548 731 555947855 555947671 3.360000e-46 196
3 TraesCS5B01G263700 chr5A 91.759 1723 101 20 2468 4175 476668530 476666834 0.000000e+00 2357
4 TraesCS5B01G263700 chr5A 89.346 1070 69 26 732 1787 476670136 476669098 0.000000e+00 1303
5 TraesCS5B01G263700 chr5A 93.382 408 26 1 1898 2304 476668915 476668508 1.690000e-168 603
6 TraesCS5B01G263700 chr5D 89.004 1546 103 28 2479 4004 375311023 375309525 0.000000e+00 1851
7 TraesCS5B01G263700 chr5D 90.761 985 71 12 732 1705 375312658 375311683 0.000000e+00 1297
8 TraesCS5B01G263700 chr5D 84.540 718 93 9 1 716 394166113 394165412 0.000000e+00 695
9 TraesCS5B01G263700 chr5D 93.154 409 25 2 1898 2304 375311418 375311011 7.870000e-167 597
10 TraesCS5B01G263700 chr4B 88.858 727 76 5 4 728 34248649 34247926 0.000000e+00 889
11 TraesCS5B01G263700 chr3D 92.927 509 36 0 1080 1588 502125642 502126150 0.000000e+00 741
12 TraesCS5B01G263700 chr3D 89.555 517 54 0 2756 3272 502126664 502127180 0.000000e+00 656
13 TraesCS5B01G263700 chr3D 83.155 748 81 19 2 731 611892475 611891755 3.590000e-180 641
14 TraesCS5B01G263700 chr3D 86.066 366 50 1 1904 2269 502126202 502126566 3.990000e-105 392
15 TraesCS5B01G263700 chr3D 86.667 135 9 3 2306 2438 604254835 604254962 1.590000e-29 141
16 TraesCS5B01G263700 chr3A 92.717 508 37 0 1080 1587 641558119 641558626 0.000000e+00 734
17 TraesCS5B01G263700 chr3A 88.555 533 59 2 2741 3272 641559120 641559651 0.000000e+00 645
18 TraesCS5B01G263700 chr3A 79.255 752 100 31 1 730 716373328 716372611 1.380000e-129 473
19 TraesCS5B01G263700 chr3A 85.955 356 50 0 1904 2259 641558679 641559034 8.630000e-102 381
20 TraesCS5B01G263700 chr2B 83.201 756 96 23 1 741 647898007 647897268 0.000000e+00 664
21 TraesCS5B01G263700 chr2B 82.933 750 97 23 1 735 647858993 647859726 0.000000e+00 647
22 TraesCS5B01G263700 chr2D 83.133 747 88 11 1 730 103036266 103035541 0.000000e+00 647
23 TraesCS5B01G263700 chr2D 86.047 215 23 5 486 699 642825151 642824943 1.540000e-54 224
24 TraesCS5B01G263700 chr2D 77.200 250 47 6 485 731 339960929 339961171 2.060000e-28 137
25 TraesCS5B01G263700 chr1D 83.288 730 80 20 1 716 38871627 38870926 6.000000e-178 634
26 TraesCS5B01G263700 chr1D 82.493 754 88 22 1 734 359713963 359714692 4.670000e-174 621
27 TraesCS5B01G263700 chr3B 87.430 533 67 0 2740 3272 663408494 663409026 7.820000e-172 614
28 TraesCS5B01G263700 chr3B 86.679 533 69 1 2740 3272 663335474 663336004 1.320000e-164 590
29 TraesCS5B01G263700 chr3B 86.503 489 64 1 1080 1568 663364076 663364562 1.740000e-148 536
30 TraesCS5B01G263700 chr3B 85.685 489 67 2 1080 1568 663291254 663291739 2.930000e-141 512
31 TraesCS5B01G263700 chr3B 78.348 702 113 17 46 731 435855845 435856523 6.580000e-113 418
32 TraesCS5B01G263700 chr6B 81.842 749 96 26 3 731 535363225 535362497 1.020000e-165 593
33 TraesCS5B01G263700 chr2A 81.561 743 101 16 2 731 638607510 638606791 7.930000e-162 580
34 TraesCS5B01G263700 chr6D 81.208 745 95 19 1 731 454293041 454293754 3.720000e-155 558
35 TraesCS5B01G263700 chr6D 92.169 166 10 2 2308 2472 138973631 138973468 9.200000e-57 231
36 TraesCS5B01G263700 chr1B 82.289 367 33 10 2 354 56449603 56449951 5.380000e-74 289
37 TraesCS5B01G263700 chr7B 85.520 221 29 3 513 731 735913766 735913985 1.190000e-55 228
38 TraesCS5B01G263700 chr7B 82.213 253 34 9 482 731 601235680 601235924 1.550000e-49 207
39 TraesCS5B01G263700 chr7B 88.496 113 8 3 2302 2410 7602071 7602182 9.600000e-27 132
40 TraesCS5B01G263700 chr7A 90.643 171 14 2 2304 2472 102561514 102561684 4.280000e-55 226
41 TraesCS5B01G263700 chr4D 77.419 248 50 3 486 731 496096055 496096298 4.430000e-30 143
42 TraesCS5B01G263700 chr4D 91.579 95 8 0 2308 2402 497922930 497923024 9.600000e-27 132
43 TraesCS5B01G263700 chr7D 88.393 112 7 5 2303 2410 66397367 66397476 3.450000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G263700 chr5B 448129568 448133821 4253 True 7856.000000 7856 100.000000 1 4254 1 chr5B.!!$R1 4253
1 TraesCS5B01G263700 chr5A 476666834 476670136 3302 True 1421.000000 2357 91.495667 732 4175 3 chr5A.!!$R1 3443
2 TraesCS5B01G263700 chr5D 375309525 375312658 3133 True 1248.333333 1851 90.973000 732 4004 3 chr5D.!!$R2 3272
3 TraesCS5B01G263700 chr5D 394165412 394166113 701 True 695.000000 695 84.540000 1 716 1 chr5D.!!$R1 715
4 TraesCS5B01G263700 chr4B 34247926 34248649 723 True 889.000000 889 88.858000 4 728 1 chr4B.!!$R1 724
5 TraesCS5B01G263700 chr3D 611891755 611892475 720 True 641.000000 641 83.155000 2 731 1 chr3D.!!$R1 729
6 TraesCS5B01G263700 chr3D 502125642 502127180 1538 False 596.333333 741 89.516000 1080 3272 3 chr3D.!!$F2 2192
7 TraesCS5B01G263700 chr3A 641558119 641559651 1532 False 586.666667 734 89.075667 1080 3272 3 chr3A.!!$F1 2192
8 TraesCS5B01G263700 chr3A 716372611 716373328 717 True 473.000000 473 79.255000 1 730 1 chr3A.!!$R1 729
9 TraesCS5B01G263700 chr2B 647897268 647898007 739 True 664.000000 664 83.201000 1 741 1 chr2B.!!$R1 740
10 TraesCS5B01G263700 chr2B 647858993 647859726 733 False 647.000000 647 82.933000 1 735 1 chr2B.!!$F1 734
11 TraesCS5B01G263700 chr2D 103035541 103036266 725 True 647.000000 647 83.133000 1 730 1 chr2D.!!$R1 729
12 TraesCS5B01G263700 chr1D 38870926 38871627 701 True 634.000000 634 83.288000 1 716 1 chr1D.!!$R1 715
13 TraesCS5B01G263700 chr1D 359713963 359714692 729 False 621.000000 621 82.493000 1 734 1 chr1D.!!$F1 733
14 TraesCS5B01G263700 chr3B 663408494 663409026 532 False 614.000000 614 87.430000 2740 3272 1 chr3B.!!$F5 532
15 TraesCS5B01G263700 chr3B 663335474 663336004 530 False 590.000000 590 86.679000 2740 3272 1 chr3B.!!$F3 532
16 TraesCS5B01G263700 chr3B 435855845 435856523 678 False 418.000000 418 78.348000 46 731 1 chr3B.!!$F1 685
17 TraesCS5B01G263700 chr6B 535362497 535363225 728 True 593.000000 593 81.842000 3 731 1 chr6B.!!$R1 728
18 TraesCS5B01G263700 chr2A 638606791 638607510 719 True 580.000000 580 81.561000 2 731 1 chr2A.!!$R1 729
19 TraesCS5B01G263700 chr6D 454293041 454293754 713 False 558.000000 558 81.208000 1 731 1 chr6D.!!$F1 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 243 0.179137 CCGATTCGAGCTGTAGTGCA 60.179 55.0 7.83 0.00 34.99 4.57 F
225 246 0.458543 ATTCGAGCTGTAGTGCACGG 60.459 55.0 12.01 4.57 44.63 4.94 F
1014 1131 0.833287 GAGCAATGGCAGTCCTCCTA 59.167 55.0 0.00 0.00 44.61 2.94 F
2080 2348 0.873054 GAGATGATGCAATCTGCCCG 59.127 55.0 5.62 0.00 45.81 6.13 F
2286 2555 0.875728 TTGCTTGCAATTGCCAATGC 59.124 45.0 26.94 22.68 42.86 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 1743 0.106149 AGTTTCGAGGTTTCGCCAGT 59.894 50.0 0.00 0.00 46.28 4.00 R
2080 2348 0.107945 CAGGCCCTGTGCTAGACTTC 60.108 60.0 1.39 0.00 40.92 3.01 R
2459 2728 0.796312 ACGGTAGCATTGCTTTCGTG 59.204 50.0 26.54 15.28 41.48 4.35 R
3231 3515 0.250252 TTGAACATCCAGCGACTGCA 60.250 50.0 0.00 0.00 46.23 4.41 R
4041 4334 1.410004 ACTCGGGTTGTTCACTCAGA 58.590 50.0 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 98 2.435805 TCTGCCATAAACCCTAGCTCTG 59.564 50.000 0.00 0.00 0.00 3.35
97 104 4.687219 GCCATAAACCCTAGCTCTGATGTT 60.687 45.833 0.00 0.00 0.00 2.71
102 109 3.177228 ACCCTAGCTCTGATGTTGAACT 58.823 45.455 0.00 0.00 0.00 3.01
148 155 2.891580 CCCTAGCTCTACTTCGCCATAA 59.108 50.000 0.00 0.00 0.00 1.90
153 160 5.023533 AGCTCTACTTCGCCATAAATGAA 57.976 39.130 0.00 0.00 0.00 2.57
216 237 4.162690 GGCCCCGATTCGAGCTGT 62.163 66.667 7.83 0.00 0.00 4.40
217 238 2.792947 GGCCCCGATTCGAGCTGTA 61.793 63.158 7.83 0.00 0.00 2.74
218 239 1.300233 GCCCCGATTCGAGCTGTAG 60.300 63.158 7.83 0.00 0.00 2.74
219 240 2.017559 GCCCCGATTCGAGCTGTAGT 62.018 60.000 7.83 0.00 0.00 2.73
220 241 0.249073 CCCCGATTCGAGCTGTAGTG 60.249 60.000 7.83 0.00 0.00 2.74
221 242 0.872021 CCCGATTCGAGCTGTAGTGC 60.872 60.000 7.83 0.00 0.00 4.40
222 243 0.179137 CCGATTCGAGCTGTAGTGCA 60.179 55.000 7.83 0.00 34.99 4.57
223 244 0.917259 CGATTCGAGCTGTAGTGCAC 59.083 55.000 9.40 9.40 34.99 4.57
224 245 0.917259 GATTCGAGCTGTAGTGCACG 59.083 55.000 12.01 0.00 45.56 5.34
225 246 0.458543 ATTCGAGCTGTAGTGCACGG 60.459 55.000 12.01 4.57 44.63 4.94
226 247 1.802337 TTCGAGCTGTAGTGCACGGT 61.802 55.000 12.01 2.07 44.63 4.83
227 248 2.088763 CGAGCTGTAGTGCACGGTG 61.089 63.158 12.01 3.15 41.80 4.94
237 270 3.632107 GCACGGTGCAAACGACGA 61.632 61.111 27.10 0.00 44.26 4.20
320 384 3.772025 CAGTAATCAGGAGGGAAGACACT 59.228 47.826 0.00 0.00 0.00 3.55
468 545 2.094700 CCAAGTGAATCCTCTCGAACGA 60.095 50.000 0.00 0.00 0.00 3.85
536 618 3.060363 CGGGTTGATTAGAGAAAACGACG 59.940 47.826 0.00 0.00 0.00 5.12
539 621 4.143179 GGTTGATTAGAGAAAACGACGTGG 60.143 45.833 0.00 0.00 0.00 4.94
540 622 4.247267 TGATTAGAGAAAACGACGTGGT 57.753 40.909 0.00 0.00 0.00 4.16
542 624 5.051816 TGATTAGAGAAAACGACGTGGTTT 58.948 37.500 21.12 21.12 41.65 3.27
572 656 1.487231 CAAAACTGCGTCCGACGAG 59.513 57.895 24.78 18.83 46.05 4.18
598 683 2.756400 CCACCTGGCTGCCACTTA 59.244 61.111 19.30 0.00 0.00 2.24
618 703 0.955428 TCGTTCTGTCATTGGCCTGC 60.955 55.000 3.32 0.00 0.00 4.85
649 734 1.321474 CACATGAGGTGCAAGTTGGT 58.679 50.000 4.75 0.00 41.36 3.67
693 778 7.615582 TGCAAGTTTAGGACTAAATCATCAG 57.384 36.000 7.68 0.00 37.72 2.90
716 801 5.354234 AGATTTTGTGCAAGTTAGGATACCG 59.646 40.000 0.00 0.00 37.17 4.02
735 822 0.888619 GGGTGCTTTTACCTCCAAGC 59.111 55.000 0.00 0.00 44.87 4.01
746 833 1.662044 CTCCAAGCCAAACACAGCC 59.338 57.895 0.00 0.00 0.00 4.85
748 835 2.336088 CAAGCCAAACACAGCCCG 59.664 61.111 0.00 0.00 0.00 6.13
753 840 2.625823 CCAAACACAGCCCGCGATT 61.626 57.895 8.23 0.00 0.00 3.34
755 842 2.625823 AAACACAGCCCGCGATTGG 61.626 57.895 8.23 0.20 0.00 3.16
862 952 3.657350 CCCCTTTCTCGCCCCCAA 61.657 66.667 0.00 0.00 0.00 4.12
909 1000 2.202756 GGCGACATGTCCTCCGAC 60.203 66.667 20.03 7.54 39.66 4.79
950 1041 4.717629 CGCGTGCGGTTCTCTCCA 62.718 66.667 6.30 0.00 35.56 3.86
1006 1097 3.805267 GGAGACGAGCAATGGCAG 58.195 61.111 0.00 0.00 44.61 4.85
1014 1131 0.833287 GAGCAATGGCAGTCCTCCTA 59.167 55.000 0.00 0.00 44.61 2.94
1023 1140 4.253257 GTCCTCCTACTCGCGGCG 62.253 72.222 17.70 17.70 0.00 6.46
1042 1159 4.849329 CCGCGTCCGTCCTGCTAC 62.849 72.222 4.92 0.00 0.00 3.58
1043 1160 3.812019 CGCGTCCGTCCTGCTACT 61.812 66.667 0.00 0.00 0.00 2.57
1044 1161 2.572284 GCGTCCGTCCTGCTACTT 59.428 61.111 0.00 0.00 0.00 2.24
1049 1166 1.153549 CCGTCCTGCTACTTCTGCC 60.154 63.158 0.00 0.00 0.00 4.85
1052 1169 2.512515 CCTGCTACTTCTGCCGCC 60.513 66.667 0.00 0.00 0.00 6.13
1575 1692 2.592993 GGCCTACTGGTGGTGAGCA 61.593 63.158 0.00 0.00 35.27 4.26
1590 1708 1.768275 TGAGCACTTCTTGTTCCCTCA 59.232 47.619 0.00 0.00 34.59 3.86
1595 1713 3.808728 CACTTCTTGTTCCCTCACTTCA 58.191 45.455 0.00 0.00 0.00 3.02
1604 1722 2.095461 TCCCTCACTTCACTCTGATCG 58.905 52.381 0.00 0.00 0.00 3.69
1605 1723 1.821753 CCCTCACTTCACTCTGATCGT 59.178 52.381 0.00 0.00 0.00 3.73
1613 1731 6.037281 TCACTTCACTCTGATCGTACTCATAC 59.963 42.308 0.00 0.00 0.00 2.39
1621 1739 7.499563 ACTCTGATCGTACTCATACAACATACT 59.500 37.037 0.00 0.00 0.00 2.12
1622 1740 7.639945 TCTGATCGTACTCATACAACATACTG 58.360 38.462 0.00 0.00 0.00 2.74
1623 1741 6.206498 TGATCGTACTCATACAACATACTGC 58.794 40.000 0.00 0.00 0.00 4.40
1624 1742 4.928601 TCGTACTCATACAACATACTGCC 58.071 43.478 0.00 0.00 0.00 4.85
1625 1743 4.399934 TCGTACTCATACAACATACTGCCA 59.600 41.667 0.00 0.00 0.00 4.92
1626 1744 4.503007 CGTACTCATACAACATACTGCCAC 59.497 45.833 0.00 0.00 0.00 5.01
1658 1776 4.618489 CCTCGAAACTGATTGAACAAATGC 59.382 41.667 0.00 0.00 0.00 3.56
1665 1783 5.762045 ACTGATTGAACAAATGCAGTGTAC 58.238 37.500 6.27 0.00 36.31 2.90
1677 1795 7.040478 ACAAATGCAGTGTACTCATGTAAATGT 60.040 33.333 4.06 0.00 0.00 2.71
1689 1807 6.874134 ACTCATGTAAATGTACTGACTTGTCC 59.126 38.462 0.00 0.00 0.00 4.02
1701 1830 4.141390 ACTGACTTGTCCAATCCTTTCACT 60.141 41.667 0.00 0.00 0.00 3.41
1702 1831 4.389374 TGACTTGTCCAATCCTTTCACTC 58.611 43.478 0.00 0.00 0.00 3.51
1703 1832 4.103153 TGACTTGTCCAATCCTTTCACTCT 59.897 41.667 0.00 0.00 0.00 3.24
1704 1833 4.392940 ACTTGTCCAATCCTTTCACTCTG 58.607 43.478 0.00 0.00 0.00 3.35
1705 1834 4.141390 ACTTGTCCAATCCTTTCACTCTGT 60.141 41.667 0.00 0.00 0.00 3.41
1706 1835 4.008074 TGTCCAATCCTTTCACTCTGTC 57.992 45.455 0.00 0.00 0.00 3.51
1707 1836 3.648067 TGTCCAATCCTTTCACTCTGTCT 59.352 43.478 0.00 0.00 0.00 3.41
1708 1837 3.999663 GTCCAATCCTTTCACTCTGTCTG 59.000 47.826 0.00 0.00 0.00 3.51
1709 1838 3.903714 TCCAATCCTTTCACTCTGTCTGA 59.096 43.478 0.00 0.00 0.00 3.27
1710 1839 4.347876 TCCAATCCTTTCACTCTGTCTGAA 59.652 41.667 0.00 0.00 0.00 3.02
1711 1840 4.694509 CCAATCCTTTCACTCTGTCTGAAG 59.305 45.833 0.00 0.00 0.00 3.02
1712 1841 5.512060 CCAATCCTTTCACTCTGTCTGAAGA 60.512 44.000 0.00 0.00 0.00 2.87
1713 1842 4.592485 TCCTTTCACTCTGTCTGAAGAC 57.408 45.455 3.41 3.41 44.97 3.01
1714 1843 4.219115 TCCTTTCACTCTGTCTGAAGACT 58.781 43.478 11.55 0.00 44.99 3.24
1760 1889 9.944376 AGAATTAGTTAAGTACACACATCACAT 57.056 29.630 0.00 0.00 0.00 3.21
1763 1892 9.719355 ATTAGTTAAGTACACACATCACATTCA 57.281 29.630 0.00 0.00 0.00 2.57
1764 1893 7.421530 AGTTAAGTACACACATCACATTCAC 57.578 36.000 0.00 0.00 0.00 3.18
1765 1894 6.426937 AGTTAAGTACACACATCACATTCACC 59.573 38.462 0.00 0.00 0.00 4.02
1766 1895 3.325870 AGTACACACATCACATTCACCG 58.674 45.455 0.00 0.00 0.00 4.94
1767 1896 2.254546 ACACACATCACATTCACCGT 57.745 45.000 0.00 0.00 0.00 4.83
1768 1897 2.571212 ACACACATCACATTCACCGTT 58.429 42.857 0.00 0.00 0.00 4.44
1769 1898 2.290367 ACACACATCACATTCACCGTTG 59.710 45.455 0.00 0.00 0.00 4.10
1770 1899 2.290367 CACACATCACATTCACCGTTGT 59.710 45.455 0.00 0.00 0.00 3.32
1771 1900 2.548057 ACACATCACATTCACCGTTGTC 59.452 45.455 0.00 0.00 0.00 3.18
1772 1901 2.547634 CACATCACATTCACCGTTGTCA 59.452 45.455 0.00 0.00 0.00 3.58
1773 1902 3.189080 CACATCACATTCACCGTTGTCAT 59.811 43.478 0.00 0.00 0.00 3.06
1774 1903 3.820467 ACATCACATTCACCGTTGTCATT 59.180 39.130 0.00 0.00 0.00 2.57
1775 1904 3.894782 TCACATTCACCGTTGTCATTG 57.105 42.857 0.00 0.00 0.00 2.82
1776 1905 3.210227 TCACATTCACCGTTGTCATTGT 58.790 40.909 0.00 0.00 0.00 2.71
1777 1906 3.629855 TCACATTCACCGTTGTCATTGTT 59.370 39.130 0.00 0.00 0.00 2.83
1778 1907 4.816925 TCACATTCACCGTTGTCATTGTTA 59.183 37.500 0.00 0.00 0.00 2.41
1779 1908 5.471797 TCACATTCACCGTTGTCATTGTTAT 59.528 36.000 0.00 0.00 0.00 1.89
1780 1909 6.016693 TCACATTCACCGTTGTCATTGTTATT 60.017 34.615 0.00 0.00 0.00 1.40
1781 1910 6.640499 CACATTCACCGTTGTCATTGTTATTT 59.360 34.615 0.00 0.00 0.00 1.40
1782 1911 7.168972 CACATTCACCGTTGTCATTGTTATTTT 59.831 33.333 0.00 0.00 0.00 1.82
1783 1912 7.708752 ACATTCACCGTTGTCATTGTTATTTTT 59.291 29.630 0.00 0.00 0.00 1.94
1784 1913 7.456684 TTCACCGTTGTCATTGTTATTTTTG 57.543 32.000 0.00 0.00 0.00 2.44
1785 1914 6.565234 TCACCGTTGTCATTGTTATTTTTGT 58.435 32.000 0.00 0.00 0.00 2.83
1786 1915 7.036220 TCACCGTTGTCATTGTTATTTTTGTT 58.964 30.769 0.00 0.00 0.00 2.83
1787 1916 7.545965 TCACCGTTGTCATTGTTATTTTTGTTT 59.454 29.630 0.00 0.00 0.00 2.83
1788 1917 8.808529 CACCGTTGTCATTGTTATTTTTGTTTA 58.191 29.630 0.00 0.00 0.00 2.01
1789 1918 9.535878 ACCGTTGTCATTGTTATTTTTGTTTAT 57.464 25.926 0.00 0.00 0.00 1.40
1828 1962 9.744468 AATCAGTTGTTGTTATTGGTTTTACTC 57.256 29.630 0.00 0.00 0.00 2.59
1833 1967 7.317842 TGTTGTTATTGGTTTTACTCGTTGA 57.682 32.000 0.00 0.00 0.00 3.18
1834 1968 7.759465 TGTTGTTATTGGTTTTACTCGTTGAA 58.241 30.769 0.00 0.00 0.00 2.69
1842 1976 4.260907 GGTTTTACTCGTTGAAGGTTCACC 60.261 45.833 0.00 0.00 36.83 4.02
1843 1977 3.823281 TTACTCGTTGAAGGTTCACCA 57.177 42.857 0.00 0.00 36.83 4.17
1844 1978 1.949465 ACTCGTTGAAGGTTCACCAC 58.051 50.000 0.00 0.00 36.83 4.16
1846 1980 2.285083 CTCGTTGAAGGTTCACCACAA 58.715 47.619 0.00 2.01 36.83 3.33
1850 1984 3.366476 CGTTGAAGGTTCACCACAAACAA 60.366 43.478 9.24 0.00 36.83 2.83
1857 1991 3.980775 GGTTCACCACAAACAAATCGATG 59.019 43.478 0.00 0.00 35.64 3.84
1875 2009 9.675464 AAATCGATGTTTACAATTTAGGTAGGA 57.325 29.630 0.00 0.00 0.00 2.94
1876 2010 9.847224 AATCGATGTTTACAATTTAGGTAGGAT 57.153 29.630 0.00 0.00 0.00 3.24
1878 2012 9.976511 TCGATGTTTACAATTTAGGTAGGATAG 57.023 33.333 0.00 0.00 0.00 2.08
1879 2013 9.204570 CGATGTTTACAATTTAGGTAGGATAGG 57.795 37.037 0.00 0.00 0.00 2.57
1880 2014 8.919777 ATGTTTACAATTTAGGTAGGATAGGC 57.080 34.615 0.00 0.00 0.00 3.93
1882 2016 6.982160 TTACAATTTAGGTAGGATAGGCGA 57.018 37.500 0.00 0.00 0.00 5.54
1883 2017 5.881923 ACAATTTAGGTAGGATAGGCGAA 57.118 39.130 0.00 0.00 0.00 4.70
1884 2018 6.243216 ACAATTTAGGTAGGATAGGCGAAA 57.757 37.500 0.00 0.00 0.00 3.46
1885 2019 6.838382 ACAATTTAGGTAGGATAGGCGAAAT 58.162 36.000 0.00 0.00 0.00 2.17
1888 2022 9.449719 CAATTTAGGTAGGATAGGCGAAATTAT 57.550 33.333 0.00 0.00 0.00 1.28
1889 2023 9.449719 AATTTAGGTAGGATAGGCGAAATTATG 57.550 33.333 0.00 0.00 0.00 1.90
1890 2024 7.549147 TTAGGTAGGATAGGCGAAATTATGT 57.451 36.000 0.00 0.00 0.00 2.29
1891 2025 6.038997 AGGTAGGATAGGCGAAATTATGTC 57.961 41.667 0.00 0.00 0.00 3.06
1892 2026 4.863131 GGTAGGATAGGCGAAATTATGTCG 59.137 45.833 0.00 0.00 41.46 4.35
1893 2027 3.926616 AGGATAGGCGAAATTATGTCGG 58.073 45.455 6.92 0.00 38.93 4.79
1894 2028 3.323979 AGGATAGGCGAAATTATGTCGGT 59.676 43.478 6.92 0.00 38.93 4.69
1895 2029 3.432252 GGATAGGCGAAATTATGTCGGTG 59.568 47.826 6.92 0.00 38.93 4.94
1981 2249 4.674623 CGCAATGTCTCTATATACGGGGAC 60.675 50.000 0.00 1.15 0.00 4.46
2014 2282 4.640201 CCTAACAATGACGGGATTGACATT 59.360 41.667 13.76 0.00 36.89 2.71
2026 2294 5.068198 CGGGATTGACATTGAGGATTCAAAT 59.932 40.000 0.00 0.00 45.82 2.32
2039 2307 6.200854 TGAGGATTCAAATAACACGATCATCG 59.799 38.462 5.22 5.22 46.93 3.84
2071 2339 1.775385 TAGACACCGGAGATGATGCA 58.225 50.000 9.46 0.00 0.00 3.96
2080 2348 0.873054 GAGATGATGCAATCTGCCCG 59.127 55.000 5.62 0.00 45.81 6.13
2104 2372 2.092914 GTCTAGCACAGGGCCTGTTTAT 60.093 50.000 35.95 24.91 42.59 1.40
2143 2411 4.746535 TTGCTGGATCCGTACTAAATCA 57.253 40.909 7.39 0.00 0.00 2.57
2200 2468 4.396522 ACTTTGAGAAGCTGCTCTTTGAT 58.603 39.130 22.63 1.99 36.29 2.57
2214 2482 8.439286 GCTGCTCTTTGATAACATAACTATAGC 58.561 37.037 0.00 0.00 0.00 2.97
2249 2517 2.158957 GGACTTGGAATGCAGATCCGTA 60.159 50.000 14.65 6.38 39.98 4.02
2273 2542 5.902613 TGGAGGTATTGATCTTTTGCTTG 57.097 39.130 0.00 0.00 0.00 4.01
2280 2549 4.735662 TTGATCTTTTGCTTGCAATTGC 57.264 36.364 23.69 23.69 42.50 3.56
2286 2555 0.875728 TTGCTTGCAATTGCCAATGC 59.124 45.000 26.94 22.68 42.86 3.56
2297 2566 2.440517 TGCCAATGCACCATCATACT 57.559 45.000 0.00 0.00 44.23 2.12
2298 2567 3.574354 TGCCAATGCACCATCATACTA 57.426 42.857 0.00 0.00 44.23 1.82
2299 2568 4.103013 TGCCAATGCACCATCATACTAT 57.897 40.909 0.00 0.00 44.23 2.12
2300 2569 4.472496 TGCCAATGCACCATCATACTATT 58.528 39.130 0.00 0.00 44.23 1.73
2301 2570 5.629125 TGCCAATGCACCATCATACTATTA 58.371 37.500 0.00 0.00 44.23 0.98
2302 2571 5.706833 TGCCAATGCACCATCATACTATTAG 59.293 40.000 0.00 0.00 44.23 1.73
2303 2572 5.124457 GCCAATGCACCATCATACTATTAGG 59.876 44.000 0.00 0.00 37.47 2.69
2304 2573 6.240894 CCAATGCACCATCATACTATTAGGT 58.759 40.000 0.00 0.00 0.00 3.08
2305 2574 6.716628 CCAATGCACCATCATACTATTAGGTT 59.283 38.462 0.00 0.00 0.00 3.50
2306 2575 7.231317 CCAATGCACCATCATACTATTAGGTTT 59.769 37.037 0.00 0.00 0.00 3.27
2307 2576 8.632679 CAATGCACCATCATACTATTAGGTTTT 58.367 33.333 0.00 0.00 0.00 2.43
2308 2577 8.766994 ATGCACCATCATACTATTAGGTTTTT 57.233 30.769 0.00 0.00 0.00 1.94
2348 2617 8.908786 AGACTTTGTTTCTCAAATGATAGACA 57.091 30.769 0.00 0.00 43.78 3.41
2349 2618 9.512588 AGACTTTGTTTCTCAAATGATAGACAT 57.487 29.630 0.00 0.00 43.78 3.06
2350 2619 9.552114 GACTTTGTTTCTCAAATGATAGACATG 57.448 33.333 0.00 0.00 43.78 3.21
2351 2620 9.071276 ACTTTGTTTCTCAAATGATAGACATGT 57.929 29.630 0.00 0.00 43.78 3.21
2352 2621 9.552114 CTTTGTTTCTCAAATGATAGACATGTC 57.448 33.333 18.47 18.47 43.78 3.06
2353 2622 8.620116 TTGTTTCTCAAATGATAGACATGTCA 57.380 30.769 27.02 13.67 39.39 3.58
2354 2623 8.797350 TGTTTCTCAAATGATAGACATGTCAT 57.203 30.769 27.02 17.52 38.77 3.06
2355 2624 9.234827 TGTTTCTCAAATGATAGACATGTCATT 57.765 29.630 27.02 15.39 45.87 2.57
2365 2634 9.896645 ATGATAGACATGTCATTTACAAGAAGT 57.103 29.630 27.02 4.73 42.70 3.01
2366 2635 9.725019 TGATAGACATGTCATTTACAAGAAGTT 57.275 29.630 27.02 4.30 42.70 2.66
2367 2636 9.979270 GATAGACATGTCATTTACAAGAAGTTG 57.021 33.333 27.02 0.00 42.70 3.16
2368 2637 9.725019 ATAGACATGTCATTTACAAGAAGTTGA 57.275 29.630 27.02 0.00 42.70 3.18
2369 2638 8.092521 AGACATGTCATTTACAAGAAGTTGAG 57.907 34.615 27.02 0.00 42.70 3.02
2370 2639 7.933577 AGACATGTCATTTACAAGAAGTTGAGA 59.066 33.333 27.02 0.00 42.70 3.27
2371 2640 8.450578 ACATGTCATTTACAAGAAGTTGAGAA 57.549 30.769 0.00 0.00 42.70 2.87
2372 2641 9.071276 ACATGTCATTTACAAGAAGTTGAGAAT 57.929 29.630 0.00 0.00 42.70 2.40
2373 2642 9.903682 CATGTCATTTACAAGAAGTTGAGAATT 57.096 29.630 0.00 0.00 42.70 2.17
2382 2651 7.593825 ACAAGAAGTTGAGAATTAAAATCGGG 58.406 34.615 0.00 0.00 37.10 5.14
2383 2652 6.759497 AGAAGTTGAGAATTAAAATCGGGG 57.241 37.500 0.00 0.00 0.00 5.73
2384 2653 6.481643 AGAAGTTGAGAATTAAAATCGGGGA 58.518 36.000 0.00 0.00 0.00 4.81
2385 2654 7.119387 AGAAGTTGAGAATTAAAATCGGGGAT 58.881 34.615 0.00 0.00 0.00 3.85
2386 2655 8.272173 AGAAGTTGAGAATTAAAATCGGGGATA 58.728 33.333 0.00 0.00 0.00 2.59
2387 2656 8.451908 AAGTTGAGAATTAAAATCGGGGATAG 57.548 34.615 0.00 0.00 0.00 2.08
2388 2657 7.802117 AGTTGAGAATTAAAATCGGGGATAGA 58.198 34.615 0.00 0.00 0.00 1.98
2389 2658 8.272173 AGTTGAGAATTAAAATCGGGGATAGAA 58.728 33.333 0.00 0.00 0.00 2.10
2390 2659 8.343366 GTTGAGAATTAAAATCGGGGATAGAAC 58.657 37.037 0.00 0.00 0.00 3.01
2391 2660 7.802117 TGAGAATTAAAATCGGGGATAGAACT 58.198 34.615 0.00 0.00 0.00 3.01
2392 2661 8.272173 TGAGAATTAAAATCGGGGATAGAACTT 58.728 33.333 0.00 0.00 0.00 2.66
2393 2662 9.121658 GAGAATTAAAATCGGGGATAGAACTTT 57.878 33.333 0.00 0.00 0.00 2.66
2394 2663 9.121658 AGAATTAAAATCGGGGATAGAACTTTC 57.878 33.333 0.00 0.00 0.00 2.62
2395 2664 7.818997 ATTAAAATCGGGGATAGAACTTTCC 57.181 36.000 3.33 3.33 0.00 3.13
2396 2665 3.859061 AATCGGGGATAGAACTTTCCC 57.141 47.619 17.88 17.88 46.29 3.97
2404 2673 6.850752 GGGATAGAACTTTCCCAAAAATCA 57.149 37.500 20.12 0.00 46.27 2.57
2405 2674 6.867550 GGGATAGAACTTTCCCAAAAATCAG 58.132 40.000 20.12 0.00 46.27 2.90
2406 2675 6.663523 GGGATAGAACTTTCCCAAAAATCAGA 59.336 38.462 20.12 0.00 46.27 3.27
2407 2676 7.178451 GGGATAGAACTTTCCCAAAAATCAGAA 59.822 37.037 20.12 0.00 46.27 3.02
2408 2677 8.246871 GGATAGAACTTTCCCAAAAATCAGAAG 58.753 37.037 0.00 0.00 0.00 2.85
2409 2678 8.940397 ATAGAACTTTCCCAAAAATCAGAAGA 57.060 30.769 0.00 0.00 0.00 2.87
2410 2679 7.043961 AGAACTTTCCCAAAAATCAGAAGAC 57.956 36.000 0.00 0.00 0.00 3.01
2411 2680 5.791336 ACTTTCCCAAAAATCAGAAGACC 57.209 39.130 0.00 0.00 0.00 3.85
2412 2681 5.458595 ACTTTCCCAAAAATCAGAAGACCT 58.541 37.500 0.00 0.00 0.00 3.85
2413 2682 5.302823 ACTTTCCCAAAAATCAGAAGACCTG 59.697 40.000 0.00 0.00 44.27 4.00
2414 2683 4.453480 TCCCAAAAATCAGAAGACCTGT 57.547 40.909 0.00 0.00 43.38 4.00
2415 2684 5.576563 TCCCAAAAATCAGAAGACCTGTA 57.423 39.130 0.00 0.00 43.38 2.74
2416 2685 5.313712 TCCCAAAAATCAGAAGACCTGTAC 58.686 41.667 0.00 0.00 43.38 2.90
2417 2686 5.073144 TCCCAAAAATCAGAAGACCTGTACT 59.927 40.000 0.00 0.00 43.38 2.73
2418 2687 6.271391 TCCCAAAAATCAGAAGACCTGTACTA 59.729 38.462 0.00 0.00 43.38 1.82
2419 2688 7.037586 TCCCAAAAATCAGAAGACCTGTACTAT 60.038 37.037 0.00 0.00 43.38 2.12
2420 2689 8.265055 CCCAAAAATCAGAAGACCTGTACTATA 58.735 37.037 0.00 0.00 43.38 1.31
2421 2690 9.319143 CCAAAAATCAGAAGACCTGTACTATAG 57.681 37.037 0.00 0.00 43.38 1.31
2422 2691 9.319143 CAAAAATCAGAAGACCTGTACTATAGG 57.681 37.037 4.43 0.00 43.38 2.57
2423 2692 8.840200 AAAATCAGAAGACCTGTACTATAGGA 57.160 34.615 4.43 0.00 43.38 2.94
2424 2693 8.472007 AAATCAGAAGACCTGTACTATAGGAG 57.528 38.462 4.43 0.00 43.38 3.69
2425 2694 6.578313 TCAGAAGACCTGTACTATAGGAGT 57.422 41.667 4.43 0.00 43.38 3.85
2426 2695 6.358178 TCAGAAGACCTGTACTATAGGAGTG 58.642 44.000 4.43 0.00 43.38 3.51
2427 2696 5.533154 CAGAAGACCTGTACTATAGGAGTGG 59.467 48.000 4.43 3.28 38.71 4.00
2428 2697 3.834938 AGACCTGTACTATAGGAGTGGC 58.165 50.000 4.43 0.00 39.39 5.01
2429 2698 3.464080 AGACCTGTACTATAGGAGTGGCT 59.536 47.826 4.43 0.61 39.39 4.75
2430 2699 4.664064 AGACCTGTACTATAGGAGTGGCTA 59.336 45.833 4.43 0.00 39.39 3.93
2431 2700 4.988029 ACCTGTACTATAGGAGTGGCTAG 58.012 47.826 4.43 0.00 39.39 3.42
2432 2701 3.759618 CCTGTACTATAGGAGTGGCTAGC 59.240 52.174 6.04 6.04 39.39 3.42
2433 2702 4.507691 CCTGTACTATAGGAGTGGCTAGCT 60.508 50.000 15.72 0.00 39.39 3.32
2434 2703 5.280573 CCTGTACTATAGGAGTGGCTAGCTA 60.281 48.000 15.72 5.44 39.39 3.32
2435 2704 6.196918 TGTACTATAGGAGTGGCTAGCTAA 57.803 41.667 15.72 0.00 39.39 3.09
2436 2705 6.239396 TGTACTATAGGAGTGGCTAGCTAAG 58.761 44.000 15.72 3.34 39.39 2.18
2437 2706 5.124297 GTACTATAGGAGTGGCTAGCTAAGC 59.876 48.000 15.72 3.74 44.29 3.09
2438 2707 6.088103 TACTATAGGAGTGGCTAGCTAAGCG 61.088 48.000 15.72 0.00 45.20 4.68
2439 2708 8.207652 TACTATAGGAGTGGCTAGCTAAGCGA 62.208 46.154 15.72 0.00 45.20 4.93
2440 2709 9.428336 TACTATAGGAGTGGCTAGCTAAGCGAT 62.428 44.444 15.72 2.18 45.20 4.58
2456 2725 2.454055 GCGATCAGCTACCAAATTTGC 58.546 47.619 12.92 1.24 44.04 3.68
2457 2726 2.098117 GCGATCAGCTACCAAATTTGCT 59.902 45.455 12.92 3.77 44.04 3.91
2458 2727 3.428045 GCGATCAGCTACCAAATTTGCTT 60.428 43.478 12.92 4.36 44.04 3.91
2459 2728 4.346129 CGATCAGCTACCAAATTTGCTTC 58.654 43.478 12.92 1.97 33.03 3.86
2460 2729 4.142622 CGATCAGCTACCAAATTTGCTTCA 60.143 41.667 12.92 0.00 33.03 3.02
2461 2730 4.503741 TCAGCTACCAAATTTGCTTCAC 57.496 40.909 12.92 1.04 33.03 3.18
2462 2731 3.058293 TCAGCTACCAAATTTGCTTCACG 60.058 43.478 12.92 0.66 33.03 4.35
2463 2732 3.058293 CAGCTACCAAATTTGCTTCACGA 60.058 43.478 12.92 0.00 33.03 4.35
2464 2733 3.568007 AGCTACCAAATTTGCTTCACGAA 59.432 39.130 12.92 0.00 30.96 3.85
2465 2734 4.037446 AGCTACCAAATTTGCTTCACGAAA 59.963 37.500 12.92 0.00 30.96 3.46
2466 2735 4.382754 GCTACCAAATTTGCTTCACGAAAG 59.617 41.667 12.92 0.00 38.08 2.62
2476 2745 3.122937 CTTCACGAAAGCAATGCTACC 57.877 47.619 8.68 2.20 38.25 3.18
2494 2763 4.522022 GCTACCGTCATACTATTAGGTGGT 59.478 45.833 0.00 0.00 33.58 4.16
2499 2768 8.345724 ACCGTCATACTATTAGGTGGTATAAG 57.654 38.462 0.00 0.00 33.26 1.73
2549 2819 2.222007 TGATTGCAACTTTGTGGCAC 57.778 45.000 11.55 11.55 42.67 5.01
2603 2880 1.072965 CCTCCTAGCCCAAGCAATAGG 59.927 57.143 0.00 0.00 43.56 2.57
2684 2961 5.119694 GGTTTGGCACCTTGAAATTTTACA 58.880 37.500 0.00 0.00 43.29 2.41
2687 2964 7.095397 GGTTTGGCACCTTGAAATTTTACATAC 60.095 37.037 0.00 0.00 43.29 2.39
2688 2965 6.656632 TGGCACCTTGAAATTTTACATACA 57.343 33.333 0.00 0.00 0.00 2.29
2689 2966 6.686630 TGGCACCTTGAAATTTTACATACAG 58.313 36.000 0.00 0.00 0.00 2.74
2746 3030 6.321181 GTGGGTCATTTAAGCATCCTGATTTA 59.679 38.462 0.00 0.00 0.00 1.40
2930 3214 4.506758 TCGCTTCATCAACATCTCATCAA 58.493 39.130 0.00 0.00 0.00 2.57
3001 3285 4.540824 GCAACTTGAAGTTCCAGAATGTC 58.459 43.478 7.75 3.37 36.03 3.06
3064 3348 4.610333 TGTATGACTACAGACCTGGATGT 58.390 43.478 0.00 7.62 37.43 3.06
3327 3612 4.391830 TGAATAAGCCACGATTCTTGTGTC 59.608 41.667 0.00 0.00 35.56 3.67
3495 3780 0.984961 TGGAGGAGATTCCCTGGCTG 60.985 60.000 0.00 0.00 37.19 4.85
3508 3793 2.113986 GGCTGGGCTGTGTTCTGT 59.886 61.111 0.00 0.00 0.00 3.41
3509 3794 1.529244 GGCTGGGCTGTGTTCTGTT 60.529 57.895 0.00 0.00 0.00 3.16
3538 3823 7.445096 TGAATTCAAGACTGTAAAGCTGATTCA 59.555 33.333 5.45 0.00 0.00 2.57
3604 3889 6.062095 CCTTCCACCTAAAATGGACGAATAT 58.938 40.000 0.00 0.00 46.09 1.28
3610 3895 6.912591 CACCTAAAATGGACGAATATTGAAGC 59.087 38.462 0.00 0.00 0.00 3.86
3624 3909 7.502120 AATATTGAAGCTTAGTATGCTGTGG 57.498 36.000 11.03 0.00 41.03 4.17
3638 3923 1.678101 GCTGTGGCAGTTTGAAAGAGT 59.322 47.619 0.00 0.00 38.54 3.24
3643 3928 4.402155 TGTGGCAGTTTGAAAGAGTTGATT 59.598 37.500 0.00 0.00 0.00 2.57
3647 3932 8.296713 GTGGCAGTTTGAAAGAGTTGATTAATA 58.703 33.333 0.00 0.00 0.00 0.98
3648 3933 8.296713 TGGCAGTTTGAAAGAGTTGATTAATAC 58.703 33.333 0.00 0.00 0.00 1.89
3660 3945 8.082242 AGAGTTGATTAATACCTTGTGTTTTGC 58.918 33.333 0.00 0.00 0.00 3.68
3670 3959 5.122519 ACCTTGTGTTTTGCCCTATTTTTG 58.877 37.500 0.00 0.00 0.00 2.44
3685 3974 7.469181 GCCCTATTTTTGTCATACTCCAGAATG 60.469 40.741 0.00 0.00 0.00 2.67
3699 3988 5.072872 ACTCCAGAATGATTTCTCCCCTATG 59.927 44.000 0.00 0.00 40.28 2.23
3708 3997 4.396357 TTTCTCCCCTATGAAAAGCCAA 57.604 40.909 0.00 0.00 30.41 4.52
3766 4055 5.458891 TGTGAGCGTAGAAGTTTCTAGAAC 58.541 41.667 4.18 0.89 40.23 3.01
3848 4137 5.398169 TCTGTTGCACAGTAGTTTTTGTTG 58.602 37.500 13.59 0.00 46.03 3.33
3876 4165 8.816640 AAAATATGGCCAGCTTTATTAAATCG 57.183 30.769 13.05 0.00 0.00 3.34
4041 4334 9.725206 TTTTTGGAGAGGGTAGAACTATAGTAT 57.275 33.333 5.65 0.71 0.00 2.12
4044 4337 7.691213 TGGAGAGGGTAGAACTATAGTATCTG 58.309 42.308 19.45 0.00 0.00 2.90
4059 4352 2.751166 ATCTGAGTGAACAACCCGAG 57.249 50.000 0.00 0.00 0.00 4.63
4080 4373 8.192774 CCCGAGTAAATGTACTGTAGTAAATGA 58.807 37.037 0.00 0.00 40.82 2.57
4153 4446 5.688807 TCATTTGGAGAGGGAATTCTCATC 58.311 41.667 8.33 5.08 44.34 2.92
4198 4491 3.478857 TTTTTCGGCAGTCCTTAGTGA 57.521 42.857 0.00 0.00 0.00 3.41
4199 4492 3.478857 TTTTCGGCAGTCCTTAGTGAA 57.521 42.857 0.00 0.00 0.00 3.18
4200 4493 3.478857 TTTCGGCAGTCCTTAGTGAAA 57.521 42.857 0.00 0.00 0.00 2.69
4201 4494 3.478857 TTCGGCAGTCCTTAGTGAAAA 57.521 42.857 0.00 0.00 0.00 2.29
4202 4495 3.695830 TCGGCAGTCCTTAGTGAAAAT 57.304 42.857 0.00 0.00 0.00 1.82
4203 4496 4.811969 TCGGCAGTCCTTAGTGAAAATA 57.188 40.909 0.00 0.00 0.00 1.40
4204 4497 5.353394 TCGGCAGTCCTTAGTGAAAATAT 57.647 39.130 0.00 0.00 0.00 1.28
4205 4498 5.741011 TCGGCAGTCCTTAGTGAAAATATT 58.259 37.500 0.00 0.00 0.00 1.28
4206 4499 6.880484 TCGGCAGTCCTTAGTGAAAATATTA 58.120 36.000 0.00 0.00 0.00 0.98
4207 4500 6.759827 TCGGCAGTCCTTAGTGAAAATATTAC 59.240 38.462 0.00 0.00 0.00 1.89
4208 4501 6.761714 CGGCAGTCCTTAGTGAAAATATTACT 59.238 38.462 0.00 0.00 0.00 2.24
4209 4502 7.280205 CGGCAGTCCTTAGTGAAAATATTACTT 59.720 37.037 0.00 0.00 0.00 2.24
4210 4503 8.957466 GGCAGTCCTTAGTGAAAATATTACTTT 58.043 33.333 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 98 9.346725 GATGATTTTAGGTTTGAGTTCAACATC 57.653 33.333 0.00 0.00 35.28 3.06
97 104 5.106317 GCCGATGATTTTAGGTTTGAGTTCA 60.106 40.000 0.00 0.00 0.00 3.18
102 109 2.680841 CGGCCGATGATTTTAGGTTTGA 59.319 45.455 24.07 0.00 0.00 2.69
148 155 4.277174 TGGTGTTTCTTGCGTATGTTCATT 59.723 37.500 0.00 0.00 0.00 2.57
153 160 2.846193 AGTGGTGTTTCTTGCGTATGT 58.154 42.857 0.00 0.00 0.00 2.29
220 241 3.558282 CTCGTCGTTTGCACCGTGC 62.558 63.158 16.93 16.93 45.29 5.34
221 242 2.544359 CTCGTCGTTTGCACCGTG 59.456 61.111 5.02 0.00 0.00 4.94
222 243 2.660552 CCTCGTCGTTTGCACCGT 60.661 61.111 5.02 0.00 0.00 4.83
223 244 4.072088 GCCTCGTCGTTTGCACCG 62.072 66.667 0.00 0.00 0.00 4.94
224 245 4.072088 CGCCTCGTCGTTTGCACC 62.072 66.667 0.00 0.00 0.00 5.01
225 246 3.033764 TCGCCTCGTCGTTTGCAC 61.034 61.111 0.00 0.00 0.00 4.57
226 247 3.033764 GTCGCCTCGTCGTTTGCA 61.034 61.111 0.00 0.00 0.00 4.08
227 248 4.117372 CGTCGCCTCGTCGTTTGC 62.117 66.667 0.00 0.00 34.30 3.68
320 384 3.066190 ATCTCGTCCGCCCGTTCA 61.066 61.111 0.00 0.00 0.00 3.18
468 545 1.012486 GTCGGAATCCAACTCGCGTT 61.012 55.000 5.77 0.00 0.00 4.84
476 553 5.186942 TGAATTAAATCGGTCGGAATCCAA 58.813 37.500 0.00 0.00 0.00 3.53
598 683 1.742761 CAGGCCAATGACAGAACGAT 58.257 50.000 5.01 0.00 0.00 3.73
693 778 5.448632 CCGGTATCCTAACTTGCACAAAATC 60.449 44.000 0.00 0.00 0.00 2.17
716 801 0.888619 GCTTGGAGGTAAAAGCACCC 59.111 55.000 2.66 0.00 46.45 4.61
735 822 2.625823 AATCGCGGGCTGTGTTTGG 61.626 57.895 6.13 0.00 0.00 3.28
753 840 1.732732 CGGTTGTTTTTGTGCGAACCA 60.733 47.619 0.00 0.00 36.63 3.67
755 842 0.917939 CCGGTTGTTTTTGTGCGAAC 59.082 50.000 0.00 0.00 0.00 3.95
862 952 3.586429 GAGGAGGAGGAGGAAGATGATT 58.414 50.000 0.00 0.00 0.00 2.57
945 1036 2.308722 GGGAGCATGGGGTTGGAGA 61.309 63.158 0.00 0.00 0.00 3.71
946 1037 2.276740 GGGAGCATGGGGTTGGAG 59.723 66.667 0.00 0.00 0.00 3.86
950 1041 2.765969 CTGTGGGAGCATGGGGTT 59.234 61.111 0.00 0.00 0.00 4.11
1000 1091 1.395826 GCGAGTAGGAGGACTGCCAT 61.396 60.000 0.00 0.00 36.29 4.40
1001 1092 2.052690 GCGAGTAGGAGGACTGCCA 61.053 63.158 0.00 0.00 36.29 4.92
1002 1093 2.809010 GCGAGTAGGAGGACTGCC 59.191 66.667 0.00 0.00 31.33 4.85
1005 1096 2.829458 GCCGCGAGTAGGAGGACT 60.829 66.667 8.23 0.00 0.00 3.85
1006 1097 4.253257 CGCCGCGAGTAGGAGGAC 62.253 72.222 8.23 0.00 0.00 3.85
1025 1142 4.849329 GTAGCAGGACGGACGCGG 62.849 72.222 12.47 0.00 0.00 6.46
1026 1143 3.338126 AAGTAGCAGGACGGACGCG 62.338 63.158 3.53 3.53 0.00 6.01
1027 1144 1.516603 GAAGTAGCAGGACGGACGC 60.517 63.158 0.00 0.00 0.00 5.19
1028 1145 0.179161 CAGAAGTAGCAGGACGGACG 60.179 60.000 0.00 0.00 0.00 4.79
1029 1146 0.458716 GCAGAAGTAGCAGGACGGAC 60.459 60.000 0.00 0.00 0.00 4.79
1030 1147 1.605058 GGCAGAAGTAGCAGGACGGA 61.605 60.000 0.00 0.00 0.00 4.69
1031 1148 1.153549 GGCAGAAGTAGCAGGACGG 60.154 63.158 0.00 0.00 0.00 4.79
1032 1149 1.517257 CGGCAGAAGTAGCAGGACG 60.517 63.158 0.00 0.00 0.00 4.79
1033 1150 1.811679 GCGGCAGAAGTAGCAGGAC 60.812 63.158 0.00 0.00 0.00 3.85
1034 1151 2.579201 GCGGCAGAAGTAGCAGGA 59.421 61.111 0.00 0.00 0.00 3.86
1035 1152 2.512515 GGCGGCAGAAGTAGCAGG 60.513 66.667 3.07 0.00 0.00 4.85
1036 1153 2.887568 CGGCGGCAGAAGTAGCAG 60.888 66.667 10.53 0.00 0.00 4.24
1501 1618 0.173481 TTGGAGTCGATGAAGCCGAG 59.827 55.000 0.00 0.00 36.66 4.63
1575 1692 3.456277 AGTGAAGTGAGGGAACAAGAAGT 59.544 43.478 0.00 0.00 0.00 3.01
1590 1708 5.880887 TGTATGAGTACGATCAGAGTGAAGT 59.119 40.000 0.00 0.00 33.36 3.01
1595 1713 6.701145 ATGTTGTATGAGTACGATCAGAGT 57.299 37.500 0.00 0.00 33.36 3.24
1604 1722 5.520288 CAGTGGCAGTATGTTGTATGAGTAC 59.480 44.000 0.00 0.00 39.31 2.73
1605 1723 5.395214 CCAGTGGCAGTATGTTGTATGAGTA 60.395 44.000 0.00 0.00 39.31 2.59
1622 1740 3.423154 CGAGGTTTCGCCAGTGGC 61.423 66.667 25.07 25.07 46.75 5.01
1623 1741 0.882927 TTTCGAGGTTTCGCCAGTGG 60.883 55.000 4.20 4.20 46.28 4.00
1624 1742 0.234884 GTTTCGAGGTTTCGCCAGTG 59.765 55.000 0.00 0.00 46.28 3.66
1625 1743 0.106149 AGTTTCGAGGTTTCGCCAGT 59.894 50.000 0.00 0.00 46.28 4.00
1626 1744 0.512952 CAGTTTCGAGGTTTCGCCAG 59.487 55.000 0.00 0.00 46.28 4.85
1639 1757 5.750067 ACACTGCATTTGTTCAATCAGTTTC 59.250 36.000 10.48 0.00 34.03 2.78
1640 1758 5.663456 ACACTGCATTTGTTCAATCAGTTT 58.337 33.333 10.48 5.25 34.03 2.66
1641 1759 5.266733 ACACTGCATTTGTTCAATCAGTT 57.733 34.783 10.48 4.24 34.03 3.16
1658 1776 8.029522 AGTCAGTACATTTACATGAGTACACTG 58.970 37.037 0.00 4.22 39.33 3.66
1665 1783 6.873605 TGGACAAGTCAGTACATTTACATGAG 59.126 38.462 0.00 0.00 34.11 2.90
1677 1795 5.071788 AGTGAAAGGATTGGACAAGTCAGTA 59.928 40.000 2.29 0.00 0.00 2.74
1689 1807 5.407995 GTCTTCAGACAGAGTGAAAGGATTG 59.592 44.000 1.86 0.00 44.18 2.67
1704 1833 7.598278 TCATTAGAGTTCAGAAGTCTTCAGAC 58.402 38.462 23.03 9.49 45.08 3.51
1705 1834 7.767250 TCATTAGAGTTCAGAAGTCTTCAGA 57.233 36.000 23.03 15.52 41.33 3.27
1706 1835 9.515020 GTATCATTAGAGTTCAGAAGTCTTCAG 57.485 37.037 23.03 13.84 41.33 3.02
1707 1836 9.249053 AGTATCATTAGAGTTCAGAAGTCTTCA 57.751 33.333 23.03 12.44 41.33 3.02
1739 1868 7.601130 GGTGAATGTGATGTGTGTACTTAACTA 59.399 37.037 0.00 0.00 0.00 2.24
1741 1870 6.599437 GGTGAATGTGATGTGTGTACTTAAC 58.401 40.000 0.00 0.00 0.00 2.01
1756 1885 3.624326 ACAATGACAACGGTGAATGTG 57.376 42.857 7.88 2.14 0.00 3.21
1757 1886 5.957842 ATAACAATGACAACGGTGAATGT 57.042 34.783 7.88 3.23 0.00 2.71
1758 1887 7.636259 AAAATAACAATGACAACGGTGAATG 57.364 32.000 7.88 2.53 0.00 2.67
1759 1888 7.708752 ACAAAAATAACAATGACAACGGTGAAT 59.291 29.630 7.88 0.00 0.00 2.57
1760 1889 7.036220 ACAAAAATAACAATGACAACGGTGAA 58.964 30.769 7.88 0.00 0.00 3.18
1761 1890 6.565234 ACAAAAATAACAATGACAACGGTGA 58.435 32.000 7.88 0.00 0.00 4.02
1762 1891 6.820470 ACAAAAATAACAATGACAACGGTG 57.180 33.333 0.00 0.00 0.00 4.94
1763 1892 7.835634 AAACAAAAATAACAATGACAACGGT 57.164 28.000 0.00 0.00 0.00 4.83
1788 1917 9.328845 ACAACAACTGATTTTGAGCATAAAAAT 57.671 25.926 4.31 4.31 33.67 1.82
1789 1918 8.715191 ACAACAACTGATTTTGAGCATAAAAA 57.285 26.923 2.83 0.00 33.67 1.94
1790 1919 8.715191 AACAACAACTGATTTTGAGCATAAAA 57.285 26.923 1.39 1.39 34.39 1.52
1791 1920 9.979578 ATAACAACAACTGATTTTGAGCATAAA 57.020 25.926 0.00 0.00 0.00 1.40
1792 1921 9.979578 AATAACAACAACTGATTTTGAGCATAA 57.020 25.926 0.00 0.00 0.00 1.90
1793 1922 9.409312 CAATAACAACAACTGATTTTGAGCATA 57.591 29.630 0.00 0.00 0.00 3.14
1794 1923 7.385752 CCAATAACAACAACTGATTTTGAGCAT 59.614 33.333 0.00 0.00 0.00 3.79
1795 1924 6.700960 CCAATAACAACAACTGATTTTGAGCA 59.299 34.615 0.00 0.00 0.00 4.26
1796 1925 6.701400 ACCAATAACAACAACTGATTTTGAGC 59.299 34.615 0.00 0.00 0.00 4.26
1797 1926 8.647143 AACCAATAACAACAACTGATTTTGAG 57.353 30.769 0.00 0.00 0.00 3.02
1802 1931 9.744468 GAGTAAAACCAATAACAACAACTGATT 57.256 29.630 0.00 0.00 0.00 2.57
1811 1940 7.067251 ACCTTCAACGAGTAAAACCAATAACAA 59.933 33.333 0.00 0.00 0.00 2.83
1833 1967 3.697045 TCGATTTGTTTGTGGTGAACCTT 59.303 39.130 0.37 0.00 36.82 3.50
1834 1968 3.283751 TCGATTTGTTTGTGGTGAACCT 58.716 40.909 0.37 0.00 36.82 3.50
1850 1984 9.847224 ATCCTACCTAAATTGTAAACATCGATT 57.153 29.630 0.00 0.00 0.00 3.34
1857 1991 7.212274 TCGCCTATCCTACCTAAATTGTAAAC 58.788 38.462 0.00 0.00 0.00 2.01
1862 1996 7.745620 AATTTCGCCTATCCTACCTAAATTG 57.254 36.000 0.00 0.00 0.00 2.32
1863 1997 9.449719 CATAATTTCGCCTATCCTACCTAAATT 57.550 33.333 0.00 0.00 32.05 1.82
1864 1998 8.603304 ACATAATTTCGCCTATCCTACCTAAAT 58.397 33.333 0.00 0.00 0.00 1.40
1865 1999 7.970102 ACATAATTTCGCCTATCCTACCTAAA 58.030 34.615 0.00 0.00 0.00 1.85
1867 2001 6.127814 CGACATAATTTCGCCTATCCTACCTA 60.128 42.308 0.00 0.00 0.00 3.08
1870 2004 4.863131 CCGACATAATTTCGCCTATCCTAC 59.137 45.833 0.00 0.00 35.06 3.18
1872 2006 3.323979 ACCGACATAATTTCGCCTATCCT 59.676 43.478 0.00 0.00 35.06 3.24
1875 2009 4.330944 TCACCGACATAATTTCGCCTAT 57.669 40.909 0.00 0.00 35.06 2.57
1876 2010 3.804786 TCACCGACATAATTTCGCCTA 57.195 42.857 0.00 0.00 35.06 3.93
1878 2012 4.056050 AGTATCACCGACATAATTTCGCC 58.944 43.478 0.00 0.00 35.06 5.54
1879 2013 5.233476 TCAAGTATCACCGACATAATTTCGC 59.767 40.000 0.00 0.00 35.06 4.70
1880 2014 6.822073 TCAAGTATCACCGACATAATTTCG 57.178 37.500 0.00 0.00 36.20 3.46
1882 2016 8.721478 GCATATCAAGTATCACCGACATAATTT 58.279 33.333 0.00 0.00 0.00 1.82
1883 2017 8.097038 AGCATATCAAGTATCACCGACATAATT 58.903 33.333 0.00 0.00 0.00 1.40
1884 2018 7.615403 AGCATATCAAGTATCACCGACATAAT 58.385 34.615 0.00 0.00 0.00 1.28
1885 2019 6.993079 AGCATATCAAGTATCACCGACATAA 58.007 36.000 0.00 0.00 0.00 1.90
1888 2022 4.937201 AGCATATCAAGTATCACCGACA 57.063 40.909 0.00 0.00 0.00 4.35
1889 2023 4.084328 GCAAGCATATCAAGTATCACCGAC 60.084 45.833 0.00 0.00 0.00 4.79
1890 2024 4.058124 GCAAGCATATCAAGTATCACCGA 58.942 43.478 0.00 0.00 0.00 4.69
1891 2025 3.809279 TGCAAGCATATCAAGTATCACCG 59.191 43.478 0.00 0.00 0.00 4.94
1892 2026 5.954296 ATGCAAGCATATCAAGTATCACC 57.046 39.130 5.61 0.00 34.49 4.02
1893 2027 7.172875 AGAGAATGCAAGCATATCAAGTATCAC 59.827 37.037 8.12 0.00 35.31 3.06
1894 2028 7.172703 CAGAGAATGCAAGCATATCAAGTATCA 59.827 37.037 8.12 0.00 35.31 2.15
1895 2029 7.519843 CAGAGAATGCAAGCATATCAAGTATC 58.480 38.462 8.12 0.00 35.31 2.24
1981 2249 4.152402 CCGTCATTGTTAGGAGTGTCAAAG 59.848 45.833 0.00 0.00 0.00 2.77
2014 2282 6.200854 CGATGATCGTGTTATTTGAATCCTCA 59.799 38.462 6.68 0.00 34.72 3.86
2026 2294 2.124122 CAATCGGCGATGATCGTGTTA 58.876 47.619 24.73 0.48 42.81 2.41
2039 2307 0.657840 GTGTCTATGTGGCAATCGGC 59.342 55.000 0.00 0.00 43.74 5.54
2071 2339 1.134670 GTGCTAGACTTCGGGCAGATT 60.135 52.381 0.00 0.00 35.29 2.40
2080 2348 0.107945 CAGGCCCTGTGCTAGACTTC 60.108 60.000 1.39 0.00 40.92 3.01
2104 2372 3.563808 AGCAATTTGTCGCTGTCAAGTTA 59.436 39.130 0.00 0.00 37.02 2.24
2143 2411 4.675510 CACTTCCAAATTTGATAGCGCAT 58.324 39.130 19.86 0.06 0.00 4.73
2200 2468 9.626045 CGATGTGAATCAGCTATAGTTATGTTA 57.374 33.333 0.84 0.00 0.00 2.41
2214 2482 3.118992 TCCAAGTCCTCGATGTGAATCAG 60.119 47.826 0.00 0.00 0.00 2.90
2249 2517 6.628844 GCAAGCAAAAGATCAATACCTCCATT 60.629 38.462 0.00 0.00 0.00 3.16
2262 2530 3.128852 TGGCAATTGCAAGCAAAAGAT 57.871 38.095 30.32 0.00 44.36 2.40
2263 2531 2.616634 TGGCAATTGCAAGCAAAAGA 57.383 40.000 30.32 1.12 44.36 2.52
2264 2532 3.560503 CATTGGCAATTGCAAGCAAAAG 58.439 40.909 30.32 17.25 44.36 2.27
2280 2549 6.240894 ACCTAATAGTATGATGGTGCATTGG 58.759 40.000 0.00 0.00 0.00 3.16
2339 2608 9.896645 ACTTCTTGTAAATGACATGTCTATCAT 57.103 29.630 25.55 9.51 38.07 2.45
2340 2609 9.725019 AACTTCTTGTAAATGACATGTCTATCA 57.275 29.630 25.55 14.35 38.07 2.15
2341 2610 9.979270 CAACTTCTTGTAAATGACATGTCTATC 57.021 33.333 25.55 12.24 38.07 2.08
2342 2611 9.725019 TCAACTTCTTGTAAATGACATGTCTAT 57.275 29.630 25.55 14.66 38.07 1.98
2343 2612 9.208022 CTCAACTTCTTGTAAATGACATGTCTA 57.792 33.333 25.55 13.07 38.07 2.59
2344 2613 7.933577 TCTCAACTTCTTGTAAATGACATGTCT 59.066 33.333 25.55 9.24 38.07 3.41
2345 2614 8.087982 TCTCAACTTCTTGTAAATGACATGTC 57.912 34.615 19.27 19.27 38.07 3.06
2346 2615 8.450578 TTCTCAACTTCTTGTAAATGACATGT 57.549 30.769 0.00 0.00 38.07 3.21
2356 2625 8.726988 CCCGATTTTAATTCTCAACTTCTTGTA 58.273 33.333 0.00 0.00 0.00 2.41
2357 2626 7.309194 CCCCGATTTTAATTCTCAACTTCTTGT 60.309 37.037 0.00 0.00 0.00 3.16
2358 2627 7.029563 CCCCGATTTTAATTCTCAACTTCTTG 58.970 38.462 0.00 0.00 0.00 3.02
2359 2628 6.946009 TCCCCGATTTTAATTCTCAACTTCTT 59.054 34.615 0.00 0.00 0.00 2.52
2360 2629 6.481643 TCCCCGATTTTAATTCTCAACTTCT 58.518 36.000 0.00 0.00 0.00 2.85
2361 2630 6.753107 TCCCCGATTTTAATTCTCAACTTC 57.247 37.500 0.00 0.00 0.00 3.01
2362 2631 8.272173 TCTATCCCCGATTTTAATTCTCAACTT 58.728 33.333 0.00 0.00 0.00 2.66
2363 2632 7.802117 TCTATCCCCGATTTTAATTCTCAACT 58.198 34.615 0.00 0.00 0.00 3.16
2364 2633 8.343366 GTTCTATCCCCGATTTTAATTCTCAAC 58.657 37.037 0.00 0.00 0.00 3.18
2365 2634 8.272173 AGTTCTATCCCCGATTTTAATTCTCAA 58.728 33.333 0.00 0.00 0.00 3.02
2366 2635 7.802117 AGTTCTATCCCCGATTTTAATTCTCA 58.198 34.615 0.00 0.00 0.00 3.27
2367 2636 8.678593 AAGTTCTATCCCCGATTTTAATTCTC 57.321 34.615 0.00 0.00 0.00 2.87
2368 2637 9.121658 GAAAGTTCTATCCCCGATTTTAATTCT 57.878 33.333 0.00 0.00 0.00 2.40
2369 2638 8.350722 GGAAAGTTCTATCCCCGATTTTAATTC 58.649 37.037 0.00 0.00 0.00 2.17
2370 2639 8.234136 GGAAAGTTCTATCCCCGATTTTAATT 57.766 34.615 0.00 0.00 0.00 1.40
2371 2640 7.818997 GGAAAGTTCTATCCCCGATTTTAAT 57.181 36.000 0.00 0.00 0.00 1.40
2382 2651 7.703058 TCTGATTTTTGGGAAAGTTCTATCC 57.297 36.000 0.00 0.00 34.85 2.59
2383 2652 9.014297 TCTTCTGATTTTTGGGAAAGTTCTATC 57.986 33.333 0.00 0.00 0.00 2.08
2384 2653 8.797438 GTCTTCTGATTTTTGGGAAAGTTCTAT 58.203 33.333 0.00 0.00 0.00 1.98
2385 2654 7.230712 GGTCTTCTGATTTTTGGGAAAGTTCTA 59.769 37.037 0.00 0.00 0.00 2.10
2386 2655 6.040955 GGTCTTCTGATTTTTGGGAAAGTTCT 59.959 38.462 0.00 0.00 0.00 3.01
2387 2656 6.040955 AGGTCTTCTGATTTTTGGGAAAGTTC 59.959 38.462 0.00 0.00 0.00 3.01
2388 2657 5.899547 AGGTCTTCTGATTTTTGGGAAAGTT 59.100 36.000 0.00 0.00 0.00 2.66
2389 2658 5.302823 CAGGTCTTCTGATTTTTGGGAAAGT 59.697 40.000 0.00 0.00 46.18 2.66
2390 2659 5.302823 ACAGGTCTTCTGATTTTTGGGAAAG 59.697 40.000 0.00 0.00 46.18 2.62
2391 2660 5.208121 ACAGGTCTTCTGATTTTTGGGAAA 58.792 37.500 0.00 0.00 46.18 3.13
2392 2661 4.803452 ACAGGTCTTCTGATTTTTGGGAA 58.197 39.130 0.00 0.00 46.18 3.97
2393 2662 4.453480 ACAGGTCTTCTGATTTTTGGGA 57.547 40.909 0.00 0.00 46.18 4.37
2394 2663 5.316987 AGTACAGGTCTTCTGATTTTTGGG 58.683 41.667 0.00 0.00 46.18 4.12
2395 2664 9.319143 CTATAGTACAGGTCTTCTGATTTTTGG 57.681 37.037 0.00 0.00 46.18 3.28
2396 2665 9.319143 CCTATAGTACAGGTCTTCTGATTTTTG 57.681 37.037 0.00 0.00 46.18 2.44
2397 2666 9.268282 TCCTATAGTACAGGTCTTCTGATTTTT 57.732 33.333 0.00 0.00 46.18 1.94
2398 2667 8.840200 TCCTATAGTACAGGTCTTCTGATTTT 57.160 34.615 0.00 0.00 46.18 1.82
2399 2668 8.062536 ACTCCTATAGTACAGGTCTTCTGATTT 58.937 37.037 0.00 0.00 46.01 2.17
2400 2669 7.504238 CACTCCTATAGTACAGGTCTTCTGATT 59.496 40.741 0.00 0.00 40.31 2.57
2401 2670 7.001674 CACTCCTATAGTACAGGTCTTCTGAT 58.998 42.308 0.00 0.00 40.31 2.90
2402 2671 6.358178 CACTCCTATAGTACAGGTCTTCTGA 58.642 44.000 0.00 0.00 40.31 3.27
2403 2672 5.533154 CCACTCCTATAGTACAGGTCTTCTG 59.467 48.000 0.00 0.00 42.24 3.02
2404 2673 5.697067 CCACTCCTATAGTACAGGTCTTCT 58.303 45.833 0.00 0.00 35.76 2.85
2405 2674 4.278919 GCCACTCCTATAGTACAGGTCTTC 59.721 50.000 0.00 0.00 35.76 2.87
2406 2675 4.079096 AGCCACTCCTATAGTACAGGTCTT 60.079 45.833 0.00 0.00 35.76 3.01
2407 2676 3.464080 AGCCACTCCTATAGTACAGGTCT 59.536 47.826 0.00 0.00 35.76 3.85
2408 2677 3.834938 AGCCACTCCTATAGTACAGGTC 58.165 50.000 0.00 0.00 35.76 3.85
2409 2678 3.975479 AGCCACTCCTATAGTACAGGT 57.025 47.619 0.00 0.00 35.76 4.00
2410 2679 3.759618 GCTAGCCACTCCTATAGTACAGG 59.240 52.174 2.29 0.00 35.76 4.00
2411 2680 4.658063 AGCTAGCCACTCCTATAGTACAG 58.342 47.826 12.13 0.00 35.76 2.74
2412 2681 4.726035 AGCTAGCCACTCCTATAGTACA 57.274 45.455 12.13 0.00 35.76 2.90
2413 2682 5.124297 GCTTAGCTAGCCACTCCTATAGTAC 59.876 48.000 12.13 0.00 44.48 2.73
2414 2683 5.254901 GCTTAGCTAGCCACTCCTATAGTA 58.745 45.833 12.13 0.00 44.48 1.82
2415 2684 4.083565 GCTTAGCTAGCCACTCCTATAGT 58.916 47.826 12.13 0.00 44.48 2.12
2416 2685 4.712122 GCTTAGCTAGCCACTCCTATAG 57.288 50.000 12.13 0.00 44.48 1.31
2436 2705 2.098117 AGCAAATTTGGTAGCTGATCGC 59.902 45.455 20.81 0.97 37.09 4.58
2437 2706 4.142622 TGAAGCAAATTTGGTAGCTGATCG 60.143 41.667 22.26 0.00 38.04 3.69
2438 2707 5.098211 GTGAAGCAAATTTGGTAGCTGATC 58.902 41.667 22.26 15.09 38.04 2.92
2439 2708 4.379813 CGTGAAGCAAATTTGGTAGCTGAT 60.380 41.667 22.26 6.51 38.04 2.90
2440 2709 3.058293 CGTGAAGCAAATTTGGTAGCTGA 60.058 43.478 22.26 0.00 38.04 4.26
2441 2710 3.058293 TCGTGAAGCAAATTTGGTAGCTG 60.058 43.478 22.26 13.16 38.04 4.24
2442 2711 3.146066 TCGTGAAGCAAATTTGGTAGCT 58.854 40.909 22.26 9.00 38.04 3.32
2443 2712 3.552604 TCGTGAAGCAAATTTGGTAGC 57.447 42.857 22.26 17.11 38.04 3.58
2456 2725 2.474526 CGGTAGCATTGCTTTCGTGAAG 60.475 50.000 17.71 0.00 40.44 3.02
2457 2726 1.463056 CGGTAGCATTGCTTTCGTGAA 59.537 47.619 17.71 0.00 40.44 3.18
2458 2727 1.075542 CGGTAGCATTGCTTTCGTGA 58.924 50.000 17.71 0.00 40.44 4.35
2459 2728 0.796312 ACGGTAGCATTGCTTTCGTG 59.204 50.000 26.54 15.28 41.48 4.35
2460 2729 1.076332 GACGGTAGCATTGCTTTCGT 58.924 50.000 27.08 27.08 43.90 3.85
2461 2730 1.075542 TGACGGTAGCATTGCTTTCG 58.924 50.000 17.71 20.91 40.44 3.46
2462 2731 3.871594 AGTATGACGGTAGCATTGCTTTC 59.128 43.478 17.71 10.35 40.44 2.62
2463 2732 3.873910 AGTATGACGGTAGCATTGCTTT 58.126 40.909 17.71 0.00 40.44 3.51
2464 2733 3.543680 AGTATGACGGTAGCATTGCTT 57.456 42.857 17.71 0.00 40.44 3.91
2465 2734 4.873746 ATAGTATGACGGTAGCATTGCT 57.126 40.909 16.63 16.63 43.41 3.91
2466 2735 5.577164 CCTAATAGTATGACGGTAGCATTGC 59.423 44.000 0.00 0.00 0.00 3.56
2467 2736 6.586463 CACCTAATAGTATGACGGTAGCATTG 59.414 42.308 0.00 0.00 0.00 2.82
2468 2737 6.295123 CCACCTAATAGTATGACGGTAGCATT 60.295 42.308 0.00 0.00 0.00 3.56
2469 2738 5.185249 CCACCTAATAGTATGACGGTAGCAT 59.815 44.000 0.00 0.00 0.00 3.79
2470 2739 4.521639 CCACCTAATAGTATGACGGTAGCA 59.478 45.833 0.00 0.00 0.00 3.49
2471 2740 4.522022 ACCACCTAATAGTATGACGGTAGC 59.478 45.833 0.00 0.00 0.00 3.58
2472 2741 7.934855 ATACCACCTAATAGTATGACGGTAG 57.065 40.000 0.00 0.00 30.52 3.18
2473 2742 9.453572 CTTATACCACCTAATAGTATGACGGTA 57.546 37.037 0.00 0.00 0.00 4.02
2474 2743 7.946776 ACTTATACCACCTAATAGTATGACGGT 59.053 37.037 0.00 0.00 0.00 4.83
2475 2744 8.242053 CACTTATACCACCTAATAGTATGACGG 58.758 40.741 0.00 0.00 0.00 4.79
2476 2745 9.006839 TCACTTATACCACCTAATAGTATGACG 57.993 37.037 0.00 0.00 0.00 4.35
2499 2768 9.578439 AGCAGCTTTTTGAAATAAGATATTCAC 57.422 29.630 0.00 0.00 35.42 3.18
2514 2783 6.230849 TGCAATCAAAATAGCAGCTTTTTG 57.769 33.333 23.32 23.32 41.81 2.44
2572 2849 2.021652 CTAGGAGGGGAGAGGGGGT 61.022 68.421 0.00 0.00 0.00 4.95
2578 2855 1.314867 CTTGGGCTAGGAGGGGAGA 59.685 63.158 0.00 0.00 0.00 3.71
2603 2880 7.468220 GCCCAAGCACTACCTGTTAATTATTAC 60.468 40.741 0.00 0.00 39.53 1.89
2687 2964 7.182761 GCAATAGCTCAAAGTACAACATACTG 58.817 38.462 0.00 0.00 37.91 2.74
2688 2965 7.308782 GCAATAGCTCAAAGTACAACATACT 57.691 36.000 0.00 0.00 37.91 2.12
2746 3030 6.260936 CGTTCCCTGCAAAATTATGTATCTCT 59.739 38.462 0.00 0.00 0.00 3.10
2794 3078 5.018539 AGTACCTAGTGCGCATTTTGATA 57.981 39.130 15.91 0.00 0.00 2.15
2930 3214 5.183140 CCAGGAAAACACCGTTTTCTGATAT 59.817 40.000 23.96 9.17 44.01 1.63
3064 3348 3.071457 TCTTGTGCTTCACCATCTTCTGA 59.929 43.478 0.00 0.00 32.73 3.27
3229 3513 0.445436 GAACATCCAGCGACTGCAAG 59.555 55.000 0.00 0.00 46.23 4.01
3231 3515 0.250252 TTGAACATCCAGCGACTGCA 60.250 50.000 0.00 0.00 46.23 4.41
3495 3780 1.967319 TCAAGAACAGAACACAGCCC 58.033 50.000 0.00 0.00 0.00 5.19
3528 3813 1.741706 CGGCTCACATTGAATCAGCTT 59.258 47.619 0.00 0.00 0.00 3.74
3538 3823 1.538047 AGTGCAAATCGGCTCACATT 58.462 45.000 0.00 0.00 34.04 2.71
3604 3889 3.009723 GCCACAGCATACTAAGCTTCAA 58.990 45.455 0.00 0.00 41.14 2.69
3624 3909 8.515414 AGGTATTAATCAACTCTTTCAAACTGC 58.485 33.333 0.00 0.00 0.00 4.40
3638 3923 6.268847 AGGGCAAAACACAAGGTATTAATCAA 59.731 34.615 0.00 0.00 0.00 2.57
3643 3928 7.784470 AAATAGGGCAAAACACAAGGTATTA 57.216 32.000 0.00 0.00 0.00 0.98
3647 3932 5.122519 CAAAAATAGGGCAAAACACAAGGT 58.877 37.500 0.00 0.00 0.00 3.50
3648 3933 5.122519 ACAAAAATAGGGCAAAACACAAGG 58.877 37.500 0.00 0.00 0.00 3.61
3660 3945 7.775093 TCATTCTGGAGTATGACAAAAATAGGG 59.225 37.037 0.00 0.00 28.86 3.53
3670 3959 5.994668 GGGAGAAATCATTCTGGAGTATGAC 59.005 44.000 0.00 0.00 45.91 3.06
3685 3974 4.536765 TGGCTTTTCATAGGGGAGAAATC 58.463 43.478 0.00 0.00 34.10 2.17
3699 3988 5.003804 TCCATCTACTTGACTTGGCTTTTC 58.996 41.667 0.00 0.00 0.00 2.29
3708 3997 5.480073 GGATGATAGCTCCATCTACTTGACT 59.520 44.000 21.25 0.00 40.08 3.41
3862 4151 3.060473 GCGAGTCGCGATTTAATAAAGCT 60.060 43.478 23.39 0.00 44.55 3.74
4015 4307 9.725206 ATACTATAGTTCTACCCTCTCCAAAAA 57.275 33.333 11.40 0.00 0.00 1.94
4016 4308 9.364653 GATACTATAGTTCTACCCTCTCCAAAA 57.635 37.037 11.40 0.00 0.00 2.44
4032 4325 6.039493 CGGGTTGTTCACTCAGATACTATAGT 59.961 42.308 10.87 10.87 0.00 2.12
4041 4334 1.410004 ACTCGGGTTGTTCACTCAGA 58.590 50.000 0.00 0.00 0.00 3.27
4044 4337 4.062991 ACATTTACTCGGGTTGTTCACTC 58.937 43.478 0.00 0.00 0.00 3.51
4178 4471 3.478857 TCACTAAGGACTGCCGAAAAA 57.521 42.857 0.00 0.00 39.96 1.94
4179 4472 3.478857 TTCACTAAGGACTGCCGAAAA 57.521 42.857 0.00 0.00 39.96 2.29
4180 4473 3.478857 TTTCACTAAGGACTGCCGAAA 57.521 42.857 0.00 0.00 39.96 3.46
4181 4474 3.478857 TTTTCACTAAGGACTGCCGAA 57.521 42.857 0.00 0.00 39.96 4.30
4182 4475 3.695830 ATTTTCACTAAGGACTGCCGA 57.304 42.857 0.00 0.00 39.96 5.54
4183 4476 6.761714 AGTAATATTTTCACTAAGGACTGCCG 59.238 38.462 0.00 0.00 39.96 5.69
4184 4477 8.507524 AAGTAATATTTTCACTAAGGACTGCC 57.492 34.615 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.