Multiple sequence alignment - TraesCS5B01G262700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G262700 chr5B 100.000 2603 0 0 1 2603 447393063 447395665 0.000000e+00 4807.0
1 TraesCS5B01G262700 chr5D 91.667 1044 48 15 690 1708 374658362 374659391 0.000000e+00 1410.0
2 TraesCS5B01G262700 chr5D 88.600 500 37 7 38 529 374657881 374658368 8.020000e-165 590.0
3 TraesCS5B01G262700 chr5D 79.253 482 86 9 1891 2359 559654295 559654775 8.980000e-85 324.0
4 TraesCS5B01G262700 chr5A 90.330 910 38 8 812 1705 476399318 476400193 0.000000e+00 1147.0
5 TraesCS5B01G262700 chr5A 86.473 414 31 7 124 529 689514382 689514778 5.150000e-117 431.0
6 TraesCS5B01G262700 chr5A 90.385 52 4 1 686 736 484397642 484397693 1.670000e-07 67.6
7 TraesCS5B01G262700 chr1B 83.673 784 90 16 1711 2459 185064149 185063369 0.000000e+00 704.0
8 TraesCS5B01G262700 chr1B 86.098 410 32 7 129 529 446948234 446947841 4.010000e-113 418.0
9 TraesCS5B01G262700 chr7D 79.412 782 118 30 1709 2453 312172002 312172777 1.790000e-141 512.0
10 TraesCS5B01G262700 chr7D 86.523 371 32 6 2105 2459 431270939 431270571 2.430000e-105 392.0
11 TraesCS5B01G262700 chr7D 80.457 481 79 10 1891 2359 475460904 475461381 1.150000e-93 353.0
12 TraesCS5B01G262700 chr7D 79.253 482 86 9 1891 2359 629983566 629984046 8.980000e-85 324.0
13 TraesCS5B01G262700 chr1D 79.823 679 99 22 1709 2355 19575646 19574974 6.560000e-126 460.0
14 TraesCS5B01G262700 chr4D 90.536 317 18 5 222 529 505310035 505310348 2.410000e-110 409.0
15 TraesCS5B01G262700 chr4D 92.800 125 4 3 405 529 3433726 3433845 2.660000e-40 176.0
16 TraesCS5B01G262700 chr4D 95.349 43 2 0 124 166 505309975 505310017 4.650000e-08 69.4
17 TraesCS5B01G262700 chr3A 79.541 479 86 10 1891 2359 10445096 10444620 5.370000e-87 331.0
18 TraesCS5B01G262700 chr3D 79.418 481 84 10 1891 2359 199200938 199200461 2.500000e-85 326.0
19 TraesCS5B01G262700 chrUn 79.253 482 86 9 1891 2359 257173842 257174322 8.980000e-85 324.0
20 TraesCS5B01G262700 chr4B 86.806 144 13 6 386 529 6012732 6012595 3.470000e-34 156.0
21 TraesCS5B01G262700 chr3B 88.421 95 6 5 1710 1804 224096718 224096807 2.740000e-20 110.0
22 TraesCS5B01G262700 chr3B 82.353 119 19 2 371 489 112286360 112286244 4.580000e-18 102.0
23 TraesCS5B01G262700 chr4A 91.781 73 4 2 277 347 601280252 601280180 1.650000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G262700 chr5B 447393063 447395665 2602 False 4807 4807 100.0000 1 2603 1 chr5B.!!$F1 2602
1 TraesCS5B01G262700 chr5D 374657881 374659391 1510 False 1000 1410 90.1335 38 1708 2 chr5D.!!$F2 1670
2 TraesCS5B01G262700 chr5A 476399318 476400193 875 False 1147 1147 90.3300 812 1705 1 chr5A.!!$F1 893
3 TraesCS5B01G262700 chr1B 185063369 185064149 780 True 704 704 83.6730 1711 2459 1 chr1B.!!$R1 748
4 TraesCS5B01G262700 chr7D 312172002 312172777 775 False 512 512 79.4120 1709 2453 1 chr7D.!!$F1 744
5 TraesCS5B01G262700 chr1D 19574974 19575646 672 True 460 460 79.8230 1709 2355 1 chr1D.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.030807 TGGCTCTGGATCATGAGGGA 60.031 55.0 0.09 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 1969 0.030705 AAGGCCTCCAGGAGCTGATA 60.031 55.0 5.23 0.0 37.39 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.088589 TGCTAAATAGGAGAAAAGCACATTC 57.911 36.000 0.00 0.00 35.20 2.67
26 27 6.658816 TGCTAAATAGGAGAAAAGCACATTCA 59.341 34.615 0.00 0.00 35.20 2.57
27 28 6.969473 GCTAAATAGGAGAAAAGCACATTCAC 59.031 38.462 0.00 0.00 0.00 3.18
28 29 7.148171 GCTAAATAGGAGAAAAGCACATTCACT 60.148 37.037 0.00 0.00 0.00 3.41
29 30 9.383519 CTAAATAGGAGAAAAGCACATTCACTA 57.616 33.333 0.00 0.00 0.00 2.74
30 31 8.635765 AAATAGGAGAAAAGCACATTCACTAA 57.364 30.769 0.00 0.00 0.00 2.24
31 32 8.635765 AATAGGAGAAAAGCACATTCACTAAA 57.364 30.769 0.00 0.00 0.00 1.85
32 33 6.959639 AGGAGAAAAGCACATTCACTAAAA 57.040 33.333 0.00 0.00 0.00 1.52
33 34 7.346751 AGGAGAAAAGCACATTCACTAAAAA 57.653 32.000 0.00 0.00 0.00 1.94
62 63 1.524008 GGAGAAAAACACCCGGGCAG 61.524 60.000 24.08 17.08 0.00 4.85
78 79 1.754234 CAGCCCATGCCCAGGTTAC 60.754 63.158 0.00 0.00 38.69 2.50
93 94 1.532437 GGTTACAGCCGTACCACAAAC 59.468 52.381 0.00 0.00 0.00 2.93
131 132 4.321230 GGCTCATTACACCCTCTGTTTTTG 60.321 45.833 0.00 0.00 33.91 2.44
155 156 0.473755 TCTCAACAAGGCTGGCTTGA 59.526 50.000 39.69 23.09 35.88 3.02
158 159 1.419762 TCAACAAGGCTGGCTTGAGTA 59.580 47.619 39.69 24.56 35.88 2.59
159 160 2.040278 TCAACAAGGCTGGCTTGAGTAT 59.960 45.455 39.69 23.59 35.88 2.12
181 182 0.030807 TGGCTCTGGATCATGAGGGA 60.031 55.000 0.09 0.00 0.00 4.20
184 185 1.070445 GCTCTGGATCATGAGGGACAG 59.930 57.143 0.09 6.94 0.00 3.51
198 201 4.235762 ACAGTGCACCCTCGCGTT 62.236 61.111 14.63 0.00 33.35 4.84
201 204 2.260434 GTGCACCCTCGCGTTCTA 59.740 61.111 5.22 0.00 33.35 2.10
204 207 2.872557 CACCCTCGCGTTCTACGA 59.127 61.111 5.77 0.00 46.05 3.43
221 224 0.464554 CGAGCCCCCTTTTGGAGATC 60.465 60.000 0.00 0.00 44.07 2.75
222 225 0.106469 GAGCCCCCTTTTGGAGATCC 60.106 60.000 0.00 0.00 44.07 3.36
224 227 1.584717 GCCCCCTTTTGGAGATCCCT 61.585 60.000 0.00 0.00 44.07 4.20
225 228 1.010795 CCCCCTTTTGGAGATCCCTT 58.989 55.000 0.00 0.00 44.07 3.95
226 229 1.362584 CCCCCTTTTGGAGATCCCTTT 59.637 52.381 0.00 0.00 44.07 3.11
227 230 2.225624 CCCCCTTTTGGAGATCCCTTTT 60.226 50.000 0.00 0.00 44.07 2.27
228 231 2.833943 CCCCTTTTGGAGATCCCTTTTG 59.166 50.000 0.00 0.00 44.07 2.44
229 232 2.833943 CCCTTTTGGAGATCCCTTTTGG 59.166 50.000 0.00 0.00 44.07 3.28
230 233 3.502119 CCCTTTTGGAGATCCCTTTTGGA 60.502 47.826 0.00 0.00 45.69 3.53
231 234 3.766051 CCTTTTGGAGATCCCTTTTGGAG 59.234 47.826 0.00 0.00 45.08 3.86
232 235 4.509122 CCTTTTGGAGATCCCTTTTGGAGA 60.509 45.833 0.00 0.00 45.08 3.71
233 236 5.812364 CCTTTTGGAGATCCCTTTTGGAGAT 60.812 44.000 0.00 0.00 45.08 2.75
234 237 7.261192 CCTTTTGGAGATCCCTTTTGGAGATT 61.261 42.308 0.00 0.00 45.08 2.40
235 238 8.676396 CCTTTTGGAGATCCCTTTTGGAGATTT 61.676 40.741 0.00 0.00 45.08 2.17
251 254 4.458397 GAGATTTTGATCCAGAGATGGCA 58.542 43.478 0.00 0.00 30.90 4.92
271 274 1.292223 AAGCCTTAGCGCTTCGTCA 59.708 52.632 18.68 0.00 46.06 4.35
314 325 0.884704 ACGCATGTGACTTTCGCCTT 60.885 50.000 14.43 0.00 0.00 4.35
318 329 2.095059 GCATGTGACTTTCGCCTTTGAT 60.095 45.455 0.00 0.00 0.00 2.57
328 339 4.749245 TTCGCCTTTGATTGTTTCTCTC 57.251 40.909 0.00 0.00 0.00 3.20
337 348 4.401022 TGATTGTTTCTCTCTGGTGCAAT 58.599 39.130 0.00 0.00 0.00 3.56
357 368 8.506437 GTGCAATGAATCAATTCTAATATCCGA 58.494 33.333 4.50 0.00 37.67 4.55
364 375 6.401047 TCAATTCTAATATCCGAGACCGTT 57.599 37.500 0.00 0.00 0.00 4.44
365 376 6.812998 TCAATTCTAATATCCGAGACCGTTT 58.187 36.000 0.00 0.00 0.00 3.60
369 380 5.585390 TCTAATATCCGAGACCGTTTGAAC 58.415 41.667 0.00 0.00 0.00 3.18
408 419 2.024414 GATATCAAACAAGCCGCCCTT 58.976 47.619 0.00 0.00 0.00 3.95
425 436 2.939103 CCCTTAGCTTTCACATCTTCGG 59.061 50.000 0.00 0.00 0.00 4.30
428 439 0.326264 AGCTTTCACATCTTCGGCCT 59.674 50.000 0.00 0.00 0.00 5.19
446 457 0.179215 CTTCAAGCATGTTCGTCGGC 60.179 55.000 0.00 0.00 0.00 5.54
448 459 0.882484 TCAAGCATGTTCGTCGGCAA 60.882 50.000 0.00 0.00 0.00 4.52
467 478 4.370917 GCAATGTAATTTAGTGGCCCATG 58.629 43.478 0.00 0.00 31.22 3.66
512 523 9.921637 AGAGTTCTATAGTTTGTTCTCTCTTTG 57.078 33.333 0.00 0.00 0.00 2.77
520 531 3.117491 TGTTCTCTCTTTGGCACTCTG 57.883 47.619 0.00 0.00 0.00 3.35
522 533 1.346062 TCTCTCTTTGGCACTCTGCT 58.654 50.000 0.00 0.00 44.28 4.24
523 534 1.274728 TCTCTCTTTGGCACTCTGCTC 59.725 52.381 0.00 0.00 44.28 4.26
524 535 0.322975 TCTCTTTGGCACTCTGCTCC 59.677 55.000 0.00 0.00 44.28 4.70
525 536 1.004560 TCTTTGGCACTCTGCTCCG 60.005 57.895 0.00 0.00 44.28 4.63
526 537 2.032528 TTTGGCACTCTGCTCCGG 59.967 61.111 0.00 0.00 44.28 5.14
527 538 2.454832 CTTTGGCACTCTGCTCCGGA 62.455 60.000 2.93 2.93 44.28 5.14
528 539 1.841302 TTTGGCACTCTGCTCCGGAT 61.841 55.000 3.57 0.00 44.28 4.18
529 540 2.107953 GGCACTCTGCTCCGGATC 59.892 66.667 3.57 0.00 44.28 3.36
530 541 2.725312 GGCACTCTGCTCCGGATCA 61.725 63.158 3.57 6.11 44.28 2.92
531 542 1.227205 GCACTCTGCTCCGGATCAG 60.227 63.158 26.06 26.06 40.96 2.90
532 543 1.954362 GCACTCTGCTCCGGATCAGT 61.954 60.000 29.29 13.72 40.96 3.41
533 544 0.179116 CACTCTGCTCCGGATCAGTG 60.179 60.000 29.29 28.23 0.00 3.66
534 545 1.326213 ACTCTGCTCCGGATCAGTGG 61.326 60.000 30.29 25.21 0.00 4.00
535 546 2.202987 CTGCTCCGGATCAGTGGC 60.203 66.667 24.18 14.82 0.00 5.01
536 547 4.147449 TGCTCCGGATCAGTGGCG 62.147 66.667 3.57 0.00 0.00 5.69
537 548 4.899239 GCTCCGGATCAGTGGCGG 62.899 72.222 3.57 1.32 0.00 6.13
538 549 3.147595 CTCCGGATCAGTGGCGGA 61.148 66.667 3.57 9.30 0.00 5.54
539 550 3.144120 CTCCGGATCAGTGGCGGAG 62.144 68.421 18.78 18.78 37.75 4.63
540 551 4.227134 CCGGATCAGTGGCGGAGG 62.227 72.222 0.00 0.00 0.00 4.30
551 562 2.517875 GCGGAGGCAGGAATGCAT 60.518 61.111 0.00 0.00 39.62 3.96
552 563 1.227943 GCGGAGGCAGGAATGCATA 60.228 57.895 0.00 0.00 39.62 3.14
553 564 1.233285 GCGGAGGCAGGAATGCATAG 61.233 60.000 0.00 0.00 39.62 2.23
554 565 0.394192 CGGAGGCAGGAATGCATAGA 59.606 55.000 0.00 0.00 36.33 1.98
555 566 1.202687 CGGAGGCAGGAATGCATAGAA 60.203 52.381 0.00 0.00 36.33 2.10
556 567 2.551721 CGGAGGCAGGAATGCATAGAAT 60.552 50.000 0.00 0.00 36.33 2.40
557 568 3.080319 GGAGGCAGGAATGCATAGAATC 58.920 50.000 0.00 0.00 36.33 2.52
558 569 2.740981 GAGGCAGGAATGCATAGAATCG 59.259 50.000 0.00 0.00 36.33 3.34
559 570 1.808945 GGCAGGAATGCATAGAATCGG 59.191 52.381 0.00 0.00 36.33 4.18
560 571 2.550855 GGCAGGAATGCATAGAATCGGA 60.551 50.000 0.00 0.00 36.33 4.55
561 572 3.341823 GCAGGAATGCATAGAATCGGAT 58.658 45.455 0.00 0.00 34.41 4.18
562 573 3.126514 GCAGGAATGCATAGAATCGGATG 59.873 47.826 0.00 0.00 34.41 3.51
563 574 4.321718 CAGGAATGCATAGAATCGGATGT 58.678 43.478 0.00 0.00 0.00 3.06
564 575 4.758674 CAGGAATGCATAGAATCGGATGTT 59.241 41.667 0.00 0.00 0.00 2.71
565 576 4.758674 AGGAATGCATAGAATCGGATGTTG 59.241 41.667 0.00 0.00 0.00 3.33
566 577 4.083110 GGAATGCATAGAATCGGATGTTGG 60.083 45.833 0.00 0.00 0.00 3.77
567 578 2.849942 TGCATAGAATCGGATGTTGGG 58.150 47.619 0.00 0.00 0.00 4.12
568 579 2.154462 GCATAGAATCGGATGTTGGGG 58.846 52.381 0.00 0.00 0.00 4.96
569 580 2.224523 GCATAGAATCGGATGTTGGGGA 60.225 50.000 0.00 0.00 0.00 4.81
570 581 3.668447 CATAGAATCGGATGTTGGGGAG 58.332 50.000 0.00 0.00 0.00 4.30
571 582 0.839946 AGAATCGGATGTTGGGGAGG 59.160 55.000 0.00 0.00 0.00 4.30
572 583 0.179018 GAATCGGATGTTGGGGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
573 584 2.284515 AATCGGATGTTGGGGAGGGC 62.285 60.000 0.00 0.00 0.00 5.19
574 585 3.411517 CGGATGTTGGGGAGGGCT 61.412 66.667 0.00 0.00 0.00 5.19
575 586 2.276740 GGATGTTGGGGAGGGCTG 59.723 66.667 0.00 0.00 0.00 4.85
576 587 2.276740 GATGTTGGGGAGGGCTGG 59.723 66.667 0.00 0.00 0.00 4.85
577 588 4.066139 ATGTTGGGGAGGGCTGGC 62.066 66.667 0.00 0.00 0.00 4.85
579 590 4.748144 GTTGGGGAGGGCTGGCTG 62.748 72.222 0.00 0.00 0.00 4.85
588 599 3.133464 GGCTGGCTGCACGCAATA 61.133 61.111 18.32 0.00 45.15 1.90
589 600 2.406401 GCTGGCTGCACGCAATAG 59.594 61.111 11.80 6.32 41.67 1.73
590 601 2.401766 GCTGGCTGCACGCAATAGT 61.402 57.895 11.80 0.00 41.67 2.12
591 602 1.089481 GCTGGCTGCACGCAATAGTA 61.089 55.000 11.80 0.00 41.67 1.82
592 603 1.368641 CTGGCTGCACGCAATAGTAA 58.631 50.000 0.50 0.00 41.67 2.24
593 604 1.737236 CTGGCTGCACGCAATAGTAAA 59.263 47.619 0.50 0.00 41.67 2.01
594 605 2.155279 TGGCTGCACGCAATAGTAAAA 58.845 42.857 0.50 0.00 41.67 1.52
595 606 2.554462 TGGCTGCACGCAATAGTAAAAA 59.446 40.909 0.50 0.00 41.67 1.94
649 660 6.704056 AAGTATATTAGGATGTTGGGGAGG 57.296 41.667 0.00 0.00 0.00 4.30
650 661 5.101529 AGTATATTAGGATGTTGGGGAGGG 58.898 45.833 0.00 0.00 0.00 4.30
651 662 0.853530 ATTAGGATGTTGGGGAGGGC 59.146 55.000 0.00 0.00 0.00 5.19
652 663 1.286305 TTAGGATGTTGGGGAGGGCC 61.286 60.000 0.00 0.00 0.00 5.80
684 695 4.410400 CCACCCCTTGCCTCCGTC 62.410 72.222 0.00 0.00 0.00 4.79
685 696 4.410400 CACCCCTTGCCTCCGTCC 62.410 72.222 0.00 0.00 0.00 4.79
688 699 3.330720 CCCTTGCCTCCGTCCCTT 61.331 66.667 0.00 0.00 0.00 3.95
753 764 3.757184 TCAAATCAATGAAATGCCGACG 58.243 40.909 0.00 0.00 0.00 5.12
759 770 3.978217 TCAATGAAATGCCGACGTTTTTC 59.022 39.130 0.00 1.21 35.12 2.29
760 771 3.915437 ATGAAATGCCGACGTTTTTCT 57.085 38.095 12.57 1.26 35.12 2.52
761 772 3.701532 TGAAATGCCGACGTTTTTCTT 57.298 38.095 12.57 0.00 35.12 2.52
762 773 4.035278 TGAAATGCCGACGTTTTTCTTT 57.965 36.364 12.57 0.00 35.12 2.52
788 801 3.850098 AAGTTGCACCCTCTGCCCG 62.850 63.158 0.00 0.00 46.51 6.13
797 810 2.587194 CTCTGCCCGCCGATTCAG 60.587 66.667 0.00 0.00 0.00 3.02
841 854 4.692625 CGCAGATGAATCCGAATATTCCTT 59.307 41.667 9.87 1.58 35.40 3.36
842 855 5.163913 CGCAGATGAATCCGAATATTCCTTC 60.164 44.000 9.87 10.43 35.40 3.46
882 895 0.486879 TCTTTCCCCTTGGCCACAAT 59.513 50.000 3.88 0.00 35.73 2.71
891 910 1.273048 CTTGGCCACAATTGCTTGCTA 59.727 47.619 3.88 0.75 35.73 3.49
905 924 3.319405 TGCTTGCTATAGCTGTCCTAGAC 59.681 47.826 24.61 5.67 41.76 2.59
914 933 1.001248 TGTCCTAGACCCCTTCCCG 59.999 63.158 0.00 0.00 0.00 5.14
949 970 1.337703 CTCCATCGCTCTCTCCTTCTG 59.662 57.143 0.00 0.00 0.00 3.02
1598 1631 2.646175 CGGCCGAGGGAGAAGAACA 61.646 63.158 24.07 0.00 0.00 3.18
1604 1637 3.090037 CCGAGGGAGAAGAACAGTAGAA 58.910 50.000 0.00 0.00 0.00 2.10
1613 1658 3.311486 AGAACAGTAGAAGCAGAGCAC 57.689 47.619 0.00 0.00 0.00 4.40
1630 1679 0.169230 CACGCTCGCTCTCTGTTACT 59.831 55.000 0.00 0.00 0.00 2.24
1631 1680 0.169230 ACGCTCGCTCTCTGTTACTG 59.831 55.000 0.00 0.00 0.00 2.74
1632 1681 0.448197 CGCTCGCTCTCTGTTACTGA 59.552 55.000 0.00 0.00 0.00 3.41
1633 1682 1.064803 CGCTCGCTCTCTGTTACTGAT 59.935 52.381 0.00 0.00 0.00 2.90
1634 1683 2.458951 GCTCGCTCTCTGTTACTGATG 58.541 52.381 0.00 0.00 0.00 3.07
1635 1684 2.159310 GCTCGCTCTCTGTTACTGATGT 60.159 50.000 0.00 0.00 0.00 3.06
1636 1685 3.065510 GCTCGCTCTCTGTTACTGATGTA 59.934 47.826 0.00 0.00 0.00 2.29
1637 1686 4.788201 GCTCGCTCTCTGTTACTGATGTAG 60.788 50.000 0.00 0.00 0.00 2.74
1699 1748 9.299963 TGAAATTCTGTAAATTTGCAATATCCG 57.700 29.630 10.29 0.00 30.68 4.18
1755 1805 3.298619 TCCCGGTTCCATTACTCGAATA 58.701 45.455 0.00 0.00 0.00 1.75
1761 1811 5.352016 CGGTTCCATTACTCGAATAAAACCA 59.648 40.000 15.28 0.00 39.28 3.67
1787 1837 1.206849 TCGTGCCATACATCAGCTCAA 59.793 47.619 0.00 0.00 0.00 3.02
1788 1838 1.328680 CGTGCCATACATCAGCTCAAC 59.671 52.381 0.00 0.00 0.00 3.18
1811 1862 4.143221 CGAGAGTAGCAGTTCAGAAAAAGC 60.143 45.833 0.00 0.00 0.00 3.51
1816 1867 4.574599 AGCAGTTCAGAAAAAGCGAAAT 57.425 36.364 0.00 0.00 0.00 2.17
1817 1868 4.293415 AGCAGTTCAGAAAAAGCGAAATG 58.707 39.130 0.00 0.00 37.68 2.32
1832 1884 4.217118 AGCGAAATGAAAAGAGAGTGCAAT 59.783 37.500 0.00 0.00 0.00 3.56
1872 1927 4.504461 CGCTACAGACTTATGAATGTCCAC 59.496 45.833 0.00 0.00 34.02 4.02
1875 1944 4.836825 ACAGACTTATGAATGTCCACTGG 58.163 43.478 0.00 0.00 34.02 4.00
1884 1953 0.254178 ATGTCCACTGGCATCAGACC 59.746 55.000 8.03 0.00 43.49 3.85
1885 1954 1.448540 GTCCACTGGCATCAGACCG 60.449 63.158 0.00 0.00 43.49 4.79
1889 1958 0.463204 CACTGGCATCAGACCGAGAT 59.537 55.000 0.00 0.00 43.49 2.75
1890 1959 1.683385 CACTGGCATCAGACCGAGATA 59.317 52.381 0.00 0.00 43.49 1.98
1900 1969 0.882474 GACCGAGATACTAGGCGCAT 59.118 55.000 10.83 3.98 29.11 4.73
1905 1974 3.242903 CCGAGATACTAGGCGCATATCAG 60.243 52.174 10.83 0.00 0.00 2.90
1923 1993 3.393970 CTCCTGGAGGCCTTGCGA 61.394 66.667 16.19 0.00 34.44 5.10
1935 2005 1.497991 CCTTGCGAAGTCTTCAACGA 58.502 50.000 12.99 3.37 0.00 3.85
1973 2043 2.355363 TTGACCAGTTCGCCGTCG 60.355 61.111 0.00 0.00 0.00 5.12
2002 2072 1.144936 CGGGCTGGAGAAGGTGATC 59.855 63.158 0.00 0.00 0.00 2.92
2006 2076 1.513158 CTGGAGAAGGTGATCGCGT 59.487 57.895 5.77 0.00 0.00 6.01
2014 2084 1.226717 GGTGATCGCGTCAGTCTCC 60.227 63.158 5.77 7.37 37.56 3.71
2024 2094 0.603569 GTCAGTCTCCCGCTTCTTGA 59.396 55.000 0.00 0.00 0.00 3.02
2028 2098 1.971357 AGTCTCCCGCTTCTTGAAAGA 59.029 47.619 0.00 0.00 0.00 2.52
2040 2110 5.757850 TTCTTGAAAGAAGAAGTGAAGCC 57.242 39.130 1.31 0.00 39.95 4.35
2045 2115 0.603975 AGAAGAAGTGAAGCCGGTGC 60.604 55.000 1.90 0.00 37.95 5.01
2097 2167 1.306997 CCACCAGAGGGGCTCCTAA 60.307 63.158 4.16 0.00 45.05 2.69
2185 2263 2.094286 CAGTCTCTCCGCATTCTTGTCT 60.094 50.000 0.00 0.00 0.00 3.41
2187 2265 1.895798 TCTCTCCGCATTCTTGTCTGT 59.104 47.619 0.00 0.00 0.00 3.41
2231 2309 1.817209 GTCCTTAGGACCAGCCTCG 59.183 63.158 20.11 0.00 46.97 4.63
2233 2311 2.501610 CTTAGGACCAGCCTCGGC 59.498 66.667 0.00 0.00 46.97 5.54
2245 2323 1.173913 GCCTCGGCACCTGTTTAATT 58.826 50.000 2.41 0.00 41.49 1.40
2267 2345 4.588899 TGAGATCCACAAGGTGTTATTGG 58.411 43.478 0.00 0.00 35.89 3.16
2282 2360 9.533831 AGGTGTTATTGGAAAATGATAGAGTTT 57.466 29.630 0.00 0.00 0.00 2.66
2310 2390 0.461163 AAAAACACCAAAGCACCGCC 60.461 50.000 0.00 0.00 0.00 6.13
2328 2408 0.666274 CCGCGCTGACAGTGTTAAGA 60.666 55.000 17.01 0.00 0.00 2.10
2342 2422 6.543831 ACAGTGTTAAGAGCAGAATGTTTTCT 59.456 34.615 0.00 0.00 43.09 2.52
2355 2435 9.120538 GCAGAATGTTTTCTATTAGATACCCAA 57.879 33.333 0.00 0.00 40.28 4.12
2384 2470 3.744660 ACTCAAAGTCAGTCCCAACATC 58.255 45.455 0.00 0.00 0.00 3.06
2385 2471 3.392616 ACTCAAAGTCAGTCCCAACATCT 59.607 43.478 0.00 0.00 0.00 2.90
2400 2486 5.189539 CCCAACATCTACCCCAAAATGATTT 59.810 40.000 0.00 0.00 0.00 2.17
2401 2487 6.296374 CCCAACATCTACCCCAAAATGATTTT 60.296 38.462 0.00 0.00 0.00 1.82
2415 2501 0.316841 GATTTTTGACCAGCGGCCAA 59.683 50.000 2.24 0.00 0.00 4.52
2422 2508 3.830192 CCAGCGGCCAAATCTGCC 61.830 66.667 2.24 0.00 45.70 4.85
2436 2522 6.393990 CCAAATCTGCCTAGCTACTATACAG 58.606 44.000 0.00 0.00 0.00 2.74
2461 2547 3.818295 AAAATAGGTGGGTACTTGGCA 57.182 42.857 0.00 0.00 0.00 4.92
2462 2548 3.366052 AAATAGGTGGGTACTTGGCAG 57.634 47.619 0.00 0.00 0.00 4.85
2463 2549 0.546598 ATAGGTGGGTACTTGGCAGC 59.453 55.000 0.00 0.00 0.00 5.25
2464 2550 0.546747 TAGGTGGGTACTTGGCAGCT 60.547 55.000 0.00 0.00 0.00 4.24
2465 2551 1.074951 GGTGGGTACTTGGCAGCTT 59.925 57.895 0.00 0.00 0.00 3.74
2466 2552 0.960861 GGTGGGTACTTGGCAGCTTC 60.961 60.000 0.00 0.00 0.00 3.86
2467 2553 0.960861 GTGGGTACTTGGCAGCTTCC 60.961 60.000 0.00 0.00 0.00 3.46
2468 2554 1.378762 GGGTACTTGGCAGCTTCCA 59.621 57.895 0.00 0.00 0.00 3.53
2469 2555 0.960861 GGGTACTTGGCAGCTTCCAC 60.961 60.000 3.92 0.00 35.50 4.02
2470 2556 0.036875 GGTACTTGGCAGCTTCCACT 59.963 55.000 3.92 0.00 35.50 4.00
2471 2557 1.160137 GTACTTGGCAGCTTCCACTG 58.840 55.000 3.92 3.74 40.80 3.66
2472 2558 0.764890 TACTTGGCAGCTTCCACTGT 59.235 50.000 3.92 9.85 39.96 3.55
2473 2559 0.820891 ACTTGGCAGCTTCCACTGTG 60.821 55.000 3.92 0.00 39.96 3.66
2474 2560 0.535780 CTTGGCAGCTTCCACTGTGA 60.536 55.000 3.92 0.00 39.96 3.58
2475 2561 0.111061 TTGGCAGCTTCCACTGTGAT 59.889 50.000 3.92 0.00 39.96 3.06
2476 2562 0.607217 TGGCAGCTTCCACTGTGATG 60.607 55.000 9.86 0.01 39.96 3.07
2477 2563 0.607489 GGCAGCTTCCACTGTGATGT 60.607 55.000 9.86 0.00 39.96 3.06
2478 2564 1.242076 GCAGCTTCCACTGTGATGTT 58.758 50.000 9.86 0.00 39.96 2.71
2479 2565 1.068748 GCAGCTTCCACTGTGATGTTG 60.069 52.381 9.86 8.00 39.96 3.33
2480 2566 2.497138 CAGCTTCCACTGTGATGTTGA 58.503 47.619 9.86 0.00 32.78 3.18
2481 2567 2.483106 CAGCTTCCACTGTGATGTTGAG 59.517 50.000 9.86 0.00 32.78 3.02
2482 2568 2.105477 AGCTTCCACTGTGATGTTGAGT 59.895 45.455 9.86 0.00 0.00 3.41
2483 2569 2.880890 GCTTCCACTGTGATGTTGAGTT 59.119 45.455 9.86 0.00 0.00 3.01
2484 2570 3.058639 GCTTCCACTGTGATGTTGAGTTC 60.059 47.826 9.86 0.00 0.00 3.01
2485 2571 4.384056 CTTCCACTGTGATGTTGAGTTCT 58.616 43.478 9.86 0.00 0.00 3.01
2486 2572 3.732212 TCCACTGTGATGTTGAGTTCTG 58.268 45.455 9.86 0.00 0.00 3.02
2487 2573 3.387699 TCCACTGTGATGTTGAGTTCTGA 59.612 43.478 9.86 0.00 0.00 3.27
2488 2574 4.040829 TCCACTGTGATGTTGAGTTCTGAT 59.959 41.667 9.86 0.00 0.00 2.90
2489 2575 4.758674 CCACTGTGATGTTGAGTTCTGATT 59.241 41.667 9.86 0.00 0.00 2.57
2490 2576 5.106791 CCACTGTGATGTTGAGTTCTGATTC 60.107 44.000 9.86 0.00 0.00 2.52
2491 2577 4.687948 ACTGTGATGTTGAGTTCTGATTCG 59.312 41.667 0.00 0.00 0.00 3.34
2492 2578 4.631131 TGTGATGTTGAGTTCTGATTCGT 58.369 39.130 0.00 0.00 0.00 3.85
2493 2579 5.056480 TGTGATGTTGAGTTCTGATTCGTT 58.944 37.500 0.00 0.00 0.00 3.85
2494 2580 5.050159 TGTGATGTTGAGTTCTGATTCGTTG 60.050 40.000 0.00 0.00 0.00 4.10
2495 2581 4.452114 TGATGTTGAGTTCTGATTCGTTGG 59.548 41.667 0.00 0.00 0.00 3.77
2496 2582 2.548057 TGTTGAGTTCTGATTCGTTGGC 59.452 45.455 0.00 0.00 0.00 4.52
2497 2583 2.542020 TGAGTTCTGATTCGTTGGCA 57.458 45.000 0.00 0.00 0.00 4.92
2498 2584 2.416747 TGAGTTCTGATTCGTTGGCAG 58.583 47.619 0.00 0.00 0.00 4.85
2499 2585 1.734465 GAGTTCTGATTCGTTGGCAGG 59.266 52.381 0.00 0.00 0.00 4.85
2500 2586 1.347707 AGTTCTGATTCGTTGGCAGGA 59.652 47.619 0.00 0.00 0.00 3.86
2501 2587 1.734465 GTTCTGATTCGTTGGCAGGAG 59.266 52.381 0.00 0.00 0.00 3.69
2502 2588 0.391661 TCTGATTCGTTGGCAGGAGC 60.392 55.000 0.00 0.00 41.10 4.70
2503 2589 0.392193 CTGATTCGTTGGCAGGAGCT 60.392 55.000 0.00 0.00 41.70 4.09
2504 2590 0.674581 TGATTCGTTGGCAGGAGCTG 60.675 55.000 0.00 0.00 41.70 4.24
2513 2599 2.265739 CAGGAGCTGCGCCAAGTA 59.734 61.111 24.28 0.00 0.00 2.24
2514 2600 1.812922 CAGGAGCTGCGCCAAGTAG 60.813 63.158 24.28 4.99 35.53 2.57
2515 2601 1.984570 AGGAGCTGCGCCAAGTAGA 60.985 57.895 24.28 0.00 34.21 2.59
2516 2602 1.520342 GGAGCTGCGCCAAGTAGAG 60.520 63.158 17.92 0.00 34.21 2.43
2517 2603 2.125350 AGCTGCGCCAAGTAGAGC 60.125 61.111 4.18 5.02 34.21 4.09
2518 2604 2.434884 GCTGCGCCAAGTAGAGCA 60.435 61.111 4.18 0.00 38.03 4.26
2520 2606 2.434884 TGCGCCAAGTAGAGCAGC 60.435 61.111 4.18 0.00 34.39 5.25
2521 2607 2.434884 GCGCCAAGTAGAGCAGCA 60.435 61.111 0.00 0.00 0.00 4.41
2522 2608 2.459442 GCGCCAAGTAGAGCAGCAG 61.459 63.158 0.00 0.00 0.00 4.24
2523 2609 1.812922 CGCCAAGTAGAGCAGCAGG 60.813 63.158 0.00 0.00 0.00 4.85
2524 2610 1.451028 GCCAAGTAGAGCAGCAGGG 60.451 63.158 0.00 0.00 0.00 4.45
2525 2611 1.222936 CCAAGTAGAGCAGCAGGGG 59.777 63.158 0.00 0.00 0.00 4.79
2526 2612 1.557269 CCAAGTAGAGCAGCAGGGGT 61.557 60.000 0.00 0.00 0.00 4.95
2527 2613 0.107945 CAAGTAGAGCAGCAGGGGTC 60.108 60.000 0.00 0.00 35.57 4.46
2528 2614 0.545309 AAGTAGAGCAGCAGGGGTCA 60.545 55.000 0.00 0.00 37.74 4.02
2529 2615 0.545309 AGTAGAGCAGCAGGGGTCAA 60.545 55.000 0.00 0.00 37.74 3.18
2530 2616 0.324943 GTAGAGCAGCAGGGGTCAAA 59.675 55.000 0.00 0.00 37.74 2.69
2531 2617 1.065126 GTAGAGCAGCAGGGGTCAAAT 60.065 52.381 0.00 0.00 37.74 2.32
2532 2618 0.034670 AGAGCAGCAGGGGTCAAATC 60.035 55.000 0.00 0.00 37.74 2.17
2533 2619 0.322816 GAGCAGCAGGGGTCAAATCA 60.323 55.000 0.00 0.00 35.43 2.57
2534 2620 0.333993 AGCAGCAGGGGTCAAATCAT 59.666 50.000 0.00 0.00 0.00 2.45
2535 2621 0.743097 GCAGCAGGGGTCAAATCATC 59.257 55.000 0.00 0.00 0.00 2.92
2536 2622 1.019673 CAGCAGGGGTCAAATCATCG 58.980 55.000 0.00 0.00 0.00 3.84
2537 2623 0.620556 AGCAGGGGTCAAATCATCGT 59.379 50.000 0.00 0.00 0.00 3.73
2538 2624 1.017387 GCAGGGGTCAAATCATCGTC 58.983 55.000 0.00 0.00 0.00 4.20
2539 2625 1.678728 GCAGGGGTCAAATCATCGTCA 60.679 52.381 0.00 0.00 0.00 4.35
2540 2626 2.009774 CAGGGGTCAAATCATCGTCAC 58.990 52.381 0.00 0.00 0.00 3.67
2541 2627 1.628340 AGGGGTCAAATCATCGTCACA 59.372 47.619 0.00 0.00 0.00 3.58
2542 2628 2.009774 GGGGTCAAATCATCGTCACAG 58.990 52.381 0.00 0.00 0.00 3.66
2543 2629 2.009774 GGGTCAAATCATCGTCACAGG 58.990 52.381 0.00 0.00 0.00 4.00
2544 2630 2.615493 GGGTCAAATCATCGTCACAGGT 60.615 50.000 0.00 0.00 0.00 4.00
2545 2631 2.416547 GGTCAAATCATCGTCACAGGTG 59.583 50.000 0.00 0.00 0.00 4.00
2546 2632 3.067106 GTCAAATCATCGTCACAGGTGT 58.933 45.455 0.00 0.00 0.00 4.16
2547 2633 3.498397 GTCAAATCATCGTCACAGGTGTT 59.502 43.478 0.00 0.00 0.00 3.32
2548 2634 3.745975 TCAAATCATCGTCACAGGTGTTC 59.254 43.478 0.00 0.00 0.00 3.18
2549 2635 3.685139 AATCATCGTCACAGGTGTTCT 57.315 42.857 0.00 0.00 0.00 3.01
2550 2636 3.685139 ATCATCGTCACAGGTGTTCTT 57.315 42.857 0.00 0.00 0.00 2.52
2551 2637 3.469008 TCATCGTCACAGGTGTTCTTT 57.531 42.857 0.00 0.00 0.00 2.52
2552 2638 3.390135 TCATCGTCACAGGTGTTCTTTC 58.610 45.455 0.00 0.00 0.00 2.62
2553 2639 1.847818 TCGTCACAGGTGTTCTTTCG 58.152 50.000 0.00 0.00 0.00 3.46
2554 2640 0.859232 CGTCACAGGTGTTCTTTCGG 59.141 55.000 0.00 0.00 0.00 4.30
2555 2641 1.226746 GTCACAGGTGTTCTTTCGGG 58.773 55.000 0.00 0.00 0.00 5.14
2556 2642 0.834612 TCACAGGTGTTCTTTCGGGT 59.165 50.000 0.00 0.00 0.00 5.28
2557 2643 2.040939 TCACAGGTGTTCTTTCGGGTA 58.959 47.619 0.00 0.00 0.00 3.69
2558 2644 2.036733 TCACAGGTGTTCTTTCGGGTAG 59.963 50.000 0.00 0.00 0.00 3.18
2559 2645 2.044758 ACAGGTGTTCTTTCGGGTAGT 58.955 47.619 0.00 0.00 0.00 2.73
2560 2646 2.224209 ACAGGTGTTCTTTCGGGTAGTG 60.224 50.000 0.00 0.00 0.00 2.74
2561 2647 1.346722 AGGTGTTCTTTCGGGTAGTGG 59.653 52.381 0.00 0.00 0.00 4.00
2562 2648 1.071228 GGTGTTCTTTCGGGTAGTGGT 59.929 52.381 0.00 0.00 0.00 4.16
2563 2649 2.140717 GTGTTCTTTCGGGTAGTGGTG 58.859 52.381 0.00 0.00 0.00 4.17
2564 2650 2.040939 TGTTCTTTCGGGTAGTGGTGA 58.959 47.619 0.00 0.00 0.00 4.02
2565 2651 2.635915 TGTTCTTTCGGGTAGTGGTGAT 59.364 45.455 0.00 0.00 0.00 3.06
2566 2652 3.259902 GTTCTTTCGGGTAGTGGTGATC 58.740 50.000 0.00 0.00 0.00 2.92
2567 2653 2.816411 TCTTTCGGGTAGTGGTGATCT 58.184 47.619 0.00 0.00 0.00 2.75
2568 2654 3.170717 TCTTTCGGGTAGTGGTGATCTT 58.829 45.455 0.00 0.00 0.00 2.40
2569 2655 3.056107 TCTTTCGGGTAGTGGTGATCTTG 60.056 47.826 0.00 0.00 0.00 3.02
2570 2656 2.225382 TCGGGTAGTGGTGATCTTGA 57.775 50.000 0.00 0.00 0.00 3.02
2571 2657 2.100197 TCGGGTAGTGGTGATCTTGAG 58.900 52.381 0.00 0.00 0.00 3.02
2572 2658 1.825474 CGGGTAGTGGTGATCTTGAGT 59.175 52.381 0.00 0.00 0.00 3.41
2573 2659 2.233922 CGGGTAGTGGTGATCTTGAGTT 59.766 50.000 0.00 0.00 0.00 3.01
2574 2660 3.306780 CGGGTAGTGGTGATCTTGAGTTT 60.307 47.826 0.00 0.00 0.00 2.66
2575 2661 4.003648 GGGTAGTGGTGATCTTGAGTTTG 58.996 47.826 0.00 0.00 0.00 2.93
2576 2662 4.505039 GGGTAGTGGTGATCTTGAGTTTGT 60.505 45.833 0.00 0.00 0.00 2.83
2577 2663 4.452455 GGTAGTGGTGATCTTGAGTTTGTG 59.548 45.833 0.00 0.00 0.00 3.33
2578 2664 4.422073 AGTGGTGATCTTGAGTTTGTGA 57.578 40.909 0.00 0.00 0.00 3.58
2579 2665 4.978099 AGTGGTGATCTTGAGTTTGTGAT 58.022 39.130 0.00 0.00 0.00 3.06
2580 2666 4.758674 AGTGGTGATCTTGAGTTTGTGATG 59.241 41.667 0.00 0.00 0.00 3.07
2581 2667 4.756642 GTGGTGATCTTGAGTTTGTGATGA 59.243 41.667 0.00 0.00 0.00 2.92
2582 2668 4.756642 TGGTGATCTTGAGTTTGTGATGAC 59.243 41.667 0.00 0.00 0.00 3.06
2583 2669 4.999950 GGTGATCTTGAGTTTGTGATGACT 59.000 41.667 0.00 0.00 0.00 3.41
2584 2670 6.166279 GGTGATCTTGAGTTTGTGATGACTA 58.834 40.000 0.00 0.00 0.00 2.59
2585 2671 6.312426 GGTGATCTTGAGTTTGTGATGACTAG 59.688 42.308 0.00 0.00 0.00 2.57
2586 2672 6.312426 GTGATCTTGAGTTTGTGATGACTAGG 59.688 42.308 0.00 0.00 0.00 3.02
2587 2673 6.211384 TGATCTTGAGTTTGTGATGACTAGGA 59.789 38.462 0.00 0.00 0.00 2.94
2588 2674 6.030548 TCTTGAGTTTGTGATGACTAGGAG 57.969 41.667 0.00 0.00 0.00 3.69
2589 2675 4.808414 TGAGTTTGTGATGACTAGGAGG 57.192 45.455 0.00 0.00 0.00 4.30
2590 2676 4.416516 TGAGTTTGTGATGACTAGGAGGA 58.583 43.478 0.00 0.00 0.00 3.71
2591 2677 4.838423 TGAGTTTGTGATGACTAGGAGGAA 59.162 41.667 0.00 0.00 0.00 3.36
2592 2678 5.153950 AGTTTGTGATGACTAGGAGGAAC 57.846 43.478 0.00 0.00 0.00 3.62
2593 2679 4.020128 AGTTTGTGATGACTAGGAGGAACC 60.020 45.833 0.00 0.00 39.35 3.62
2594 2680 3.184382 TGTGATGACTAGGAGGAACCA 57.816 47.619 0.00 0.00 42.04 3.67
2595 2681 3.099905 TGTGATGACTAGGAGGAACCAG 58.900 50.000 0.00 0.00 42.04 4.00
2596 2682 3.245622 TGTGATGACTAGGAGGAACCAGA 60.246 47.826 0.00 0.00 42.04 3.86
2597 2683 3.383185 GTGATGACTAGGAGGAACCAGAG 59.617 52.174 0.00 0.00 42.04 3.35
2598 2684 3.269643 TGATGACTAGGAGGAACCAGAGA 59.730 47.826 0.00 0.00 42.04 3.10
2599 2685 4.078922 TGATGACTAGGAGGAACCAGAGAT 60.079 45.833 0.00 0.00 42.04 2.75
2600 2686 4.338795 TGACTAGGAGGAACCAGAGATT 57.661 45.455 0.00 0.00 42.04 2.40
2601 2687 4.689062 TGACTAGGAGGAACCAGAGATTT 58.311 43.478 0.00 0.00 42.04 2.17
2602 2688 4.712337 TGACTAGGAGGAACCAGAGATTTC 59.288 45.833 0.00 0.00 42.04 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.658816 TGAATGTGCTTTTCTCCTATTTAGCA 59.341 34.615 0.00 0.00 36.38 3.49
2 3 6.969473 GTGAATGTGCTTTTCTCCTATTTAGC 59.031 38.462 0.00 0.00 0.00 3.09
4 5 9.733556 TTAGTGAATGTGCTTTTCTCCTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
5 6 8.635765 TTAGTGAATGTGCTTTTCTCCTATTT 57.364 30.769 0.00 0.00 0.00 1.40
6 7 8.635765 TTTAGTGAATGTGCTTTTCTCCTATT 57.364 30.769 0.00 0.00 0.00 1.73
7 8 8.635765 TTTTAGTGAATGTGCTTTTCTCCTAT 57.364 30.769 0.00 0.00 0.00 2.57
8 9 8.458573 TTTTTAGTGAATGTGCTTTTCTCCTA 57.541 30.769 0.00 0.00 0.00 2.94
9 10 6.959639 TTTTAGTGAATGTGCTTTTCTCCT 57.040 33.333 0.00 0.00 0.00 3.69
62 63 1.754234 CTGTAACCTGGGCATGGGC 60.754 63.158 0.00 0.00 40.13 5.36
78 79 0.521291 CCATGTTTGTGGTACGGCTG 59.479 55.000 0.00 0.00 34.46 4.85
93 94 1.003839 AGCCCGTGTGTGTACCATG 60.004 57.895 0.00 0.00 0.00 3.66
103 104 1.198759 AGGGTGTAATGAGCCCGTGT 61.199 55.000 0.00 0.00 46.69 4.49
131 132 1.403323 GCCAGCCTTGTTGAGATTAGC 59.597 52.381 0.00 0.00 0.00 3.09
155 156 2.180946 TGATCCAGAGCCACCATACT 57.819 50.000 0.00 0.00 0.00 2.12
158 159 1.420514 CTCATGATCCAGAGCCACCAT 59.579 52.381 0.00 0.00 0.00 3.55
159 160 0.835276 CTCATGATCCAGAGCCACCA 59.165 55.000 0.00 0.00 0.00 4.17
181 182 4.235762 AACGCGAGGGTGCACTGT 62.236 61.111 15.93 3.72 34.15 3.55
184 185 2.092882 GTAGAACGCGAGGGTGCAC 61.093 63.158 15.93 8.80 34.15 4.57
198 201 0.545787 TCCAAAAGGGGGCTCGTAGA 60.546 55.000 0.00 0.00 37.22 2.59
201 204 1.208165 ATCTCCAAAAGGGGGCTCGT 61.208 55.000 0.00 0.00 36.91 4.18
204 207 1.584717 GGGATCTCCAAAAGGGGGCT 61.585 60.000 0.00 0.00 36.91 5.19
221 224 5.018809 TCTGGATCAAAATCTCCAAAAGGG 58.981 41.667 0.00 0.00 40.92 3.95
222 225 5.948162 TCTCTGGATCAAAATCTCCAAAAGG 59.052 40.000 0.00 0.00 40.92 3.11
224 227 6.379133 CCATCTCTGGATCAAAATCTCCAAAA 59.621 38.462 0.00 0.00 46.37 2.44
225 228 5.889853 CCATCTCTGGATCAAAATCTCCAAA 59.110 40.000 0.00 0.00 46.37 3.28
226 229 5.443283 CCATCTCTGGATCAAAATCTCCAA 58.557 41.667 0.00 0.00 46.37 3.53
227 230 4.688045 GCCATCTCTGGATCAAAATCTCCA 60.688 45.833 0.00 0.00 46.37 3.86
228 231 3.819902 GCCATCTCTGGATCAAAATCTCC 59.180 47.826 0.00 0.00 46.37 3.71
229 232 4.458397 TGCCATCTCTGGATCAAAATCTC 58.542 43.478 0.00 0.00 46.37 2.75
230 233 4.165565 TCTGCCATCTCTGGATCAAAATCT 59.834 41.667 0.00 0.00 46.37 2.40
231 234 4.458397 TCTGCCATCTCTGGATCAAAATC 58.542 43.478 0.00 0.00 46.37 2.17
232 235 4.515028 TCTGCCATCTCTGGATCAAAAT 57.485 40.909 0.00 0.00 46.37 1.82
233 236 4.267536 CTTCTGCCATCTCTGGATCAAAA 58.732 43.478 0.00 0.00 46.37 2.44
234 237 3.882444 CTTCTGCCATCTCTGGATCAAA 58.118 45.455 0.00 0.00 46.37 2.69
235 238 2.421107 GCTTCTGCCATCTCTGGATCAA 60.421 50.000 0.00 0.00 46.37 2.57
236 239 1.140452 GCTTCTGCCATCTCTGGATCA 59.860 52.381 0.00 0.00 46.37 2.92
271 274 1.123077 TGTTCATCTCTAGCCCGCAT 58.877 50.000 0.00 0.00 0.00 4.73
309 320 3.120060 CCAGAGAGAAACAATCAAAGGCG 60.120 47.826 0.00 0.00 0.00 5.52
314 325 3.819368 TGCACCAGAGAGAAACAATCAA 58.181 40.909 0.00 0.00 0.00 2.57
318 329 3.819368 TCATTGCACCAGAGAGAAACAA 58.181 40.909 0.00 0.00 0.00 2.83
328 339 9.622004 GATATTAGAATTGATTCATTGCACCAG 57.378 33.333 6.50 0.00 39.23 4.00
337 348 7.090808 CGGTCTCGGATATTAGAATTGATTCA 58.909 38.462 6.50 0.00 39.23 2.57
364 375 1.227823 CCACAGAGCCCACGTTCAA 60.228 57.895 0.00 0.00 0.00 2.69
365 376 1.978455 AACCACAGAGCCCACGTTCA 61.978 55.000 0.00 0.00 0.00 3.18
369 380 0.744414 CCATAACCACAGAGCCCACG 60.744 60.000 0.00 0.00 0.00 4.94
408 419 1.555075 AGGCCGAAGATGTGAAAGCTA 59.445 47.619 0.00 0.00 0.00 3.32
425 436 0.179215 CGACGAACATGCTTGAAGGC 60.179 55.000 6.60 0.00 0.00 4.35
428 439 0.882484 TGCCGACGAACATGCTTGAA 60.882 50.000 6.60 0.00 0.00 2.69
446 457 5.596836 ACATGGGCCACTAAATTACATTG 57.403 39.130 9.28 0.11 0.00 2.82
448 459 6.405538 CAAAACATGGGCCACTAAATTACAT 58.594 36.000 9.28 0.00 0.00 2.29
467 478 4.860072 CTCTTACAAGAGTTGGCCAAAAC 58.140 43.478 22.47 16.91 45.84 2.43
492 503 6.876257 AGTGCCAAAGAGAGAACAAACTATAG 59.124 38.462 0.00 0.00 0.00 1.31
508 519 2.037136 CCGGAGCAGAGTGCCAAAG 61.037 63.158 0.00 0.00 46.52 2.77
512 523 2.107953 GATCCGGAGCAGAGTGCC 59.892 66.667 16.44 0.00 46.52 5.01
520 531 4.899239 CCGCCACTGATCCGGAGC 62.899 72.222 14.17 14.17 44.55 4.70
523 534 4.227134 CCTCCGCCACTGATCCGG 62.227 72.222 0.00 0.00 43.21 5.14
524 535 4.899239 GCCTCCGCCACTGATCCG 62.899 72.222 0.00 0.00 0.00 4.18
525 536 3.746949 CTGCCTCCGCCACTGATCC 62.747 68.421 0.00 0.00 0.00 3.36
526 537 2.202987 CTGCCTCCGCCACTGATC 60.203 66.667 0.00 0.00 0.00 2.92
527 538 3.790437 CCTGCCTCCGCCACTGAT 61.790 66.667 0.00 0.00 0.00 2.90
529 540 3.335356 ATTCCTGCCTCCGCCACTG 62.335 63.158 0.00 0.00 0.00 3.66
530 541 3.011517 ATTCCTGCCTCCGCCACT 61.012 61.111 0.00 0.00 0.00 4.00
531 542 2.825836 CATTCCTGCCTCCGCCAC 60.826 66.667 0.00 0.00 0.00 5.01
532 543 4.802051 GCATTCCTGCCTCCGCCA 62.802 66.667 0.00 0.00 42.88 5.69
541 552 4.321718 ACATCCGATTCTATGCATTCCTG 58.678 43.478 3.54 0.00 0.00 3.86
542 553 4.630644 ACATCCGATTCTATGCATTCCT 57.369 40.909 3.54 0.00 0.00 3.36
543 554 4.083110 CCAACATCCGATTCTATGCATTCC 60.083 45.833 3.54 0.00 0.00 3.01
544 555 4.083110 CCCAACATCCGATTCTATGCATTC 60.083 45.833 3.54 0.00 0.00 2.67
545 556 3.822735 CCCAACATCCGATTCTATGCATT 59.177 43.478 3.54 0.00 0.00 3.56
546 557 3.415212 CCCAACATCCGATTCTATGCAT 58.585 45.455 3.79 3.79 0.00 3.96
547 558 2.487086 CCCCAACATCCGATTCTATGCA 60.487 50.000 0.00 0.00 0.00 3.96
548 559 2.154462 CCCCAACATCCGATTCTATGC 58.846 52.381 0.00 0.00 0.00 3.14
549 560 3.557898 CCTCCCCAACATCCGATTCTATG 60.558 52.174 0.00 0.00 0.00 2.23
550 561 2.639839 CCTCCCCAACATCCGATTCTAT 59.360 50.000 0.00 0.00 0.00 1.98
551 562 2.047061 CCTCCCCAACATCCGATTCTA 58.953 52.381 0.00 0.00 0.00 2.10
552 563 0.839946 CCTCCCCAACATCCGATTCT 59.160 55.000 0.00 0.00 0.00 2.40
553 564 0.179018 CCCTCCCCAACATCCGATTC 60.179 60.000 0.00 0.00 0.00 2.52
554 565 1.922821 CCCTCCCCAACATCCGATT 59.077 57.895 0.00 0.00 0.00 3.34
555 566 2.757124 GCCCTCCCCAACATCCGAT 61.757 63.158 0.00 0.00 0.00 4.18
556 567 3.407967 GCCCTCCCCAACATCCGA 61.408 66.667 0.00 0.00 0.00 4.55
557 568 3.411517 AGCCCTCCCCAACATCCG 61.412 66.667 0.00 0.00 0.00 4.18
558 569 2.276740 CAGCCCTCCCCAACATCC 59.723 66.667 0.00 0.00 0.00 3.51
559 570 2.276740 CCAGCCCTCCCCAACATC 59.723 66.667 0.00 0.00 0.00 3.06
560 571 4.066139 GCCAGCCCTCCCCAACAT 62.066 66.667 0.00 0.00 0.00 2.71
562 573 4.748144 CAGCCAGCCCTCCCCAAC 62.748 72.222 0.00 0.00 0.00 3.77
623 634 8.836735 CCTCCCCAACATCCTAATATACTTTAT 58.163 37.037 0.00 0.00 0.00 1.40
624 635 7.238933 CCCTCCCCAACATCCTAATATACTTTA 59.761 40.741 0.00 0.00 0.00 1.85
625 636 6.045577 CCCTCCCCAACATCCTAATATACTTT 59.954 42.308 0.00 0.00 0.00 2.66
626 637 5.551977 CCCTCCCCAACATCCTAATATACTT 59.448 44.000 0.00 0.00 0.00 2.24
627 638 5.101529 CCCTCCCCAACATCCTAATATACT 58.898 45.833 0.00 0.00 0.00 2.12
628 639 4.324331 GCCCTCCCCAACATCCTAATATAC 60.324 50.000 0.00 0.00 0.00 1.47
629 640 3.850173 GCCCTCCCCAACATCCTAATATA 59.150 47.826 0.00 0.00 0.00 0.86
630 641 2.649816 GCCCTCCCCAACATCCTAATAT 59.350 50.000 0.00 0.00 0.00 1.28
631 642 2.062636 GCCCTCCCCAACATCCTAATA 58.937 52.381 0.00 0.00 0.00 0.98
632 643 0.853530 GCCCTCCCCAACATCCTAAT 59.146 55.000 0.00 0.00 0.00 1.73
633 644 1.286305 GGCCCTCCCCAACATCCTAA 61.286 60.000 0.00 0.00 0.00 2.69
634 645 1.696314 GGCCCTCCCCAACATCCTA 60.696 63.158 0.00 0.00 0.00 2.94
635 646 3.023735 GGCCCTCCCCAACATCCT 61.024 66.667 0.00 0.00 0.00 3.24
667 678 4.410400 GACGGAGGCAAGGGGTGG 62.410 72.222 0.00 0.00 0.00 4.61
668 679 4.410400 GGACGGAGGCAAGGGGTG 62.410 72.222 0.00 0.00 0.00 4.61
671 682 2.821679 GAAAGGGACGGAGGCAAGGG 62.822 65.000 0.00 0.00 0.00 3.95
672 683 1.377333 GAAAGGGACGGAGGCAAGG 60.377 63.158 0.00 0.00 0.00 3.61
673 684 1.377333 GGAAAGGGACGGAGGCAAG 60.377 63.158 0.00 0.00 0.00 4.01
674 685 2.754375 GGAAAGGGACGGAGGCAA 59.246 61.111 0.00 0.00 0.00 4.52
675 686 3.702048 CGGAAAGGGACGGAGGCA 61.702 66.667 0.00 0.00 0.00 4.75
681 692 2.480845 GATACAATCCGGAAAGGGACG 58.519 52.381 9.01 0.00 39.34 4.79
682 693 2.847441 GGATACAATCCGGAAAGGGAC 58.153 52.381 9.01 0.00 40.13 4.46
812 825 1.072159 GGATTCATCTGCGGGGGAG 59.928 63.158 0.00 0.00 0.00 4.30
813 826 2.807107 CGGATTCATCTGCGGGGGA 61.807 63.158 0.00 0.00 0.00 4.81
814 827 2.281070 CGGATTCATCTGCGGGGG 60.281 66.667 0.00 0.00 0.00 5.40
815 828 0.250467 ATTCGGATTCATCTGCGGGG 60.250 55.000 0.00 0.00 33.18 5.73
841 854 0.468226 GTAGGCATCCGAACCATGGA 59.532 55.000 21.47 0.00 40.46 3.41
842 855 0.880278 CGTAGGCATCCGAACCATGG 60.880 60.000 11.19 11.19 0.00 3.66
882 895 3.960755 TCTAGGACAGCTATAGCAAGCAA 59.039 43.478 26.07 6.52 45.30 3.91
891 910 2.426561 GGAAGGGGTCTAGGACAGCTAT 60.427 54.545 0.00 0.00 33.68 2.97
914 933 2.427753 GAGATGGACCGATGGGGC 59.572 66.667 0.00 0.00 42.56 5.80
968 989 2.278857 CGCGACGAGATCCAAGGG 60.279 66.667 0.00 0.00 0.00 3.95
1100 1133 4.899239 GGATGTGGGAGAGCGGCG 62.899 72.222 0.51 0.51 0.00 6.46
1101 1134 3.474570 AGGATGTGGGAGAGCGGC 61.475 66.667 0.00 0.00 0.00 6.53
1102 1135 2.503061 CAGGATGTGGGAGAGCGG 59.497 66.667 0.00 0.00 0.00 5.52
1506 1539 2.941583 ACCTCCTTCCCCTTGGCC 60.942 66.667 0.00 0.00 0.00 5.36
1511 1544 2.362632 CGACGACCTCCTTCCCCT 60.363 66.667 0.00 0.00 0.00 4.79
1587 1620 3.511934 TCTGCTTCTACTGTTCTTCTCCC 59.488 47.826 0.00 0.00 0.00 4.30
1598 1631 0.172352 GAGCGTGCTCTGCTTCTACT 59.828 55.000 14.43 0.00 44.18 2.57
1613 1658 0.448197 TCAGTAACAGAGAGCGAGCG 59.552 55.000 0.00 0.00 0.00 5.03
1630 1679 6.761242 GCCAGTATTTACACATCACTACATCA 59.239 38.462 0.00 0.00 0.00 3.07
1631 1680 6.986817 AGCCAGTATTTACACATCACTACATC 59.013 38.462 0.00 0.00 0.00 3.06
1632 1681 6.763135 CAGCCAGTATTTACACATCACTACAT 59.237 38.462 0.00 0.00 0.00 2.29
1633 1682 6.106003 CAGCCAGTATTTACACATCACTACA 58.894 40.000 0.00 0.00 0.00 2.74
1634 1683 5.523916 CCAGCCAGTATTTACACATCACTAC 59.476 44.000 0.00 0.00 0.00 2.73
1635 1684 5.396324 CCCAGCCAGTATTTACACATCACTA 60.396 44.000 0.00 0.00 0.00 2.74
1636 1685 4.517285 CCAGCCAGTATTTACACATCACT 58.483 43.478 0.00 0.00 0.00 3.41
1637 1686 3.627577 CCCAGCCAGTATTTACACATCAC 59.372 47.826 0.00 0.00 0.00 3.06
1755 1805 1.178276 TGGCACGACTTTGTGGTTTT 58.822 45.000 0.00 0.00 40.26 2.43
1761 1811 3.002791 CTGATGTATGGCACGACTTTGT 58.997 45.455 0.00 0.00 0.00 2.83
1787 1837 4.585955 TTTTCTGAACTGCTACTCTCGT 57.414 40.909 0.00 0.00 0.00 4.18
1788 1838 4.143221 GCTTTTTCTGAACTGCTACTCTCG 60.143 45.833 0.00 0.00 0.00 4.04
1794 1844 5.238432 TCATTTCGCTTTTTCTGAACTGCTA 59.762 36.000 0.00 0.00 0.00 3.49
1811 1862 7.246311 ACATATTGCACTCTCTTTTCATTTCG 58.754 34.615 0.00 0.00 0.00 3.46
1842 1894 8.818057 ACATTCATAAGTCTGTAGCGTTTATTC 58.182 33.333 0.00 0.00 0.00 1.75
1847 1899 5.109903 GGACATTCATAAGTCTGTAGCGTT 58.890 41.667 0.00 0.00 35.18 4.84
1872 1927 1.959985 AGTATCTCGGTCTGATGCCAG 59.040 52.381 0.00 0.00 41.74 4.85
1875 1944 2.094957 GCCTAGTATCTCGGTCTGATGC 60.095 54.545 0.00 0.00 0.00 3.91
1884 1953 3.790456 GCTGATATGCGCCTAGTATCTCG 60.790 52.174 4.18 5.18 0.00 4.04
1885 1954 3.380004 AGCTGATATGCGCCTAGTATCTC 59.620 47.826 4.18 4.86 38.13 2.75
1889 1958 1.819288 GGAGCTGATATGCGCCTAGTA 59.181 52.381 4.18 0.00 46.93 1.82
1890 1959 0.605589 GGAGCTGATATGCGCCTAGT 59.394 55.000 4.18 0.00 46.93 2.57
1900 1969 0.030705 AAGGCCTCCAGGAGCTGATA 60.031 55.000 5.23 0.00 37.39 2.15
1923 1993 0.765510 AGCCCCTTCGTTGAAGACTT 59.234 50.000 8.09 0.00 41.71 3.01
1956 2026 2.355363 CGACGGCGAACTGGTCAA 60.355 61.111 16.62 0.00 40.82 3.18
1975 2045 3.758088 CTCCAGCCCGACATCGACG 62.758 68.421 2.09 0.00 43.02 5.12
1982 2052 1.617947 ATCACCTTCTCCAGCCCGAC 61.618 60.000 0.00 0.00 0.00 4.79
2006 2076 1.338107 TTCAAGAAGCGGGAGACTGA 58.662 50.000 0.00 0.00 39.98 3.41
2024 2094 2.222027 CACCGGCTTCACTTCTTCTTT 58.778 47.619 0.00 0.00 0.00 2.52
2028 2098 4.065110 GCACCGGCTTCACTTCTT 57.935 55.556 0.00 0.00 36.96 2.52
2040 2110 1.402259 AGATCTCTTACGACAGCACCG 59.598 52.381 0.00 0.00 0.00 4.94
2045 2115 6.153067 ACAAACTGAAGATCTCTTACGACAG 58.847 40.000 0.00 0.00 36.11 3.51
2052 2122 7.000472 TCCATGAAACAAACTGAAGATCTCTT 59.000 34.615 0.00 0.00 39.23 2.85
2071 2141 0.695462 CCCCTCTGGTGGATCCATGA 60.695 60.000 19.62 15.13 46.12 3.07
2095 2165 3.391296 GGCTGATGAGGGAGTTACCATTA 59.609 47.826 0.00 0.00 41.20 1.90
2097 2167 1.771255 GGCTGATGAGGGAGTTACCAT 59.229 52.381 0.00 0.00 41.20 3.55
2187 2265 5.441500 TCAAAAACTGGATAGTGTTGTCCA 58.558 37.500 0.00 0.00 41.72 4.02
2198 2276 7.510675 TCCTAAGGACTATCAAAAACTGGAT 57.489 36.000 0.00 0.00 0.00 3.41
2223 2301 2.463589 TAAACAGGTGCCGAGGCTGG 62.464 60.000 15.75 0.00 42.51 4.85
2227 2305 2.420022 CTCAATTAAACAGGTGCCGAGG 59.580 50.000 0.00 0.00 0.00 4.63
2231 2309 4.016444 TGGATCTCAATTAAACAGGTGCC 58.984 43.478 0.00 0.00 0.00 5.01
2233 2311 6.349611 CCTTGTGGATCTCAATTAAACAGGTG 60.350 42.308 0.00 0.00 34.57 4.00
2245 2323 4.288366 TCCAATAACACCTTGTGGATCTCA 59.712 41.667 0.00 0.00 37.94 3.27
2282 2360 6.071616 GGTGCTTTGGTGTTTTTGGATATAGA 60.072 38.462 0.00 0.00 0.00 1.98
2294 2374 3.591835 CGGCGGTGCTTTGGTGTT 61.592 61.111 0.00 0.00 0.00 3.32
2310 2390 0.710567 CTCTTAACACTGTCAGCGCG 59.289 55.000 0.00 0.00 0.00 6.86
2313 2393 3.032017 TCTGCTCTTAACACTGTCAGC 57.968 47.619 0.00 0.00 0.00 4.26
2316 2396 5.931441 AACATTCTGCTCTTAACACTGTC 57.069 39.130 0.00 0.00 0.00 3.51
2328 2408 8.494433 TGGGTATCTAATAGAAAACATTCTGCT 58.506 33.333 0.00 0.00 32.72 4.24
2348 2428 7.923414 GACTTTGAGTCAGTATTTTGGGTAT 57.077 36.000 3.33 0.00 44.45 2.73
2364 2450 4.013267 AGATGTTGGGACTGACTTTGAG 57.987 45.455 0.00 0.00 0.00 3.02
2401 2487 1.074775 AGATTTGGCCGCTGGTCAA 59.925 52.632 9.99 9.99 46.24 3.18
2415 2501 6.307776 TGACTGTATAGTAGCTAGGCAGATT 58.692 40.000 13.40 0.00 37.25 2.40
2453 2539 0.764890 ACAGTGGAAGCTGCCAAGTA 59.235 50.000 17.51 0.00 40.20 2.24
2455 2541 0.535780 TCACAGTGGAAGCTGCCAAG 60.536 55.000 17.51 14.20 40.20 3.61
2459 2545 1.068748 CAACATCACAGTGGAAGCTGC 60.069 52.381 0.00 0.00 39.96 5.25
2460 2546 2.483106 CTCAACATCACAGTGGAAGCTG 59.517 50.000 0.00 0.00 41.92 4.24
2461 2547 2.105477 ACTCAACATCACAGTGGAAGCT 59.895 45.455 0.00 0.00 0.00 3.74
2462 2548 2.498167 ACTCAACATCACAGTGGAAGC 58.502 47.619 0.00 0.00 0.00 3.86
2463 2549 4.212847 CAGAACTCAACATCACAGTGGAAG 59.787 45.833 0.00 0.00 0.00 3.46
2464 2550 4.129380 CAGAACTCAACATCACAGTGGAA 58.871 43.478 0.00 0.00 0.00 3.53
2465 2551 3.387699 TCAGAACTCAACATCACAGTGGA 59.612 43.478 0.00 0.00 0.00 4.02
2466 2552 3.732212 TCAGAACTCAACATCACAGTGG 58.268 45.455 0.00 0.00 0.00 4.00
2467 2553 5.389202 CGAATCAGAACTCAACATCACAGTG 60.389 44.000 0.00 0.00 0.00 3.66
2468 2554 4.687948 CGAATCAGAACTCAACATCACAGT 59.312 41.667 0.00 0.00 0.00 3.55
2469 2555 4.687948 ACGAATCAGAACTCAACATCACAG 59.312 41.667 0.00 0.00 0.00 3.66
2470 2556 4.631131 ACGAATCAGAACTCAACATCACA 58.369 39.130 0.00 0.00 0.00 3.58
2471 2557 5.377358 CAACGAATCAGAACTCAACATCAC 58.623 41.667 0.00 0.00 0.00 3.06
2472 2558 4.452114 CCAACGAATCAGAACTCAACATCA 59.548 41.667 0.00 0.00 0.00 3.07
2473 2559 4.670221 GCCAACGAATCAGAACTCAACATC 60.670 45.833 0.00 0.00 0.00 3.06
2474 2560 3.189287 GCCAACGAATCAGAACTCAACAT 59.811 43.478 0.00 0.00 0.00 2.71
2475 2561 2.548057 GCCAACGAATCAGAACTCAACA 59.452 45.455 0.00 0.00 0.00 3.33
2476 2562 2.548057 TGCCAACGAATCAGAACTCAAC 59.452 45.455 0.00 0.00 0.00 3.18
2477 2563 2.807967 CTGCCAACGAATCAGAACTCAA 59.192 45.455 0.00 0.00 0.00 3.02
2478 2564 2.416747 CTGCCAACGAATCAGAACTCA 58.583 47.619 0.00 0.00 0.00 3.41
2479 2565 1.734465 CCTGCCAACGAATCAGAACTC 59.266 52.381 0.00 0.00 0.00 3.01
2480 2566 1.347707 TCCTGCCAACGAATCAGAACT 59.652 47.619 0.00 0.00 0.00 3.01
2481 2567 1.734465 CTCCTGCCAACGAATCAGAAC 59.266 52.381 0.00 0.00 0.00 3.01
2482 2568 1.945819 GCTCCTGCCAACGAATCAGAA 60.946 52.381 0.00 0.00 0.00 3.02
2483 2569 0.391661 GCTCCTGCCAACGAATCAGA 60.392 55.000 0.00 0.00 0.00 3.27
2484 2570 0.392193 AGCTCCTGCCAACGAATCAG 60.392 55.000 0.00 0.00 40.80 2.90
2485 2571 0.674581 CAGCTCCTGCCAACGAATCA 60.675 55.000 0.00 0.00 40.80 2.57
2486 2572 2.093216 CAGCTCCTGCCAACGAATC 58.907 57.895 0.00 0.00 40.80 2.52
2487 2573 4.308526 CAGCTCCTGCCAACGAAT 57.691 55.556 0.00 0.00 40.80 3.34
2502 2588 3.791539 CTGCTCTACTTGGCGCAG 58.208 61.111 10.83 0.19 43.10 5.18
2503 2589 2.434884 GCTGCTCTACTTGGCGCA 60.435 61.111 10.83 0.00 0.00 6.09
2504 2590 2.434884 TGCTGCTCTACTTGGCGC 60.435 61.111 0.00 0.00 0.00 6.53
2505 2591 1.812922 CCTGCTGCTCTACTTGGCG 60.813 63.158 0.00 0.00 0.00 5.69
2506 2592 1.451028 CCCTGCTGCTCTACTTGGC 60.451 63.158 0.00 0.00 0.00 4.52
2507 2593 1.222936 CCCCTGCTGCTCTACTTGG 59.777 63.158 0.00 0.00 0.00 3.61
2508 2594 0.107945 GACCCCTGCTGCTCTACTTG 60.108 60.000 0.00 0.00 0.00 3.16
2509 2595 0.545309 TGACCCCTGCTGCTCTACTT 60.545 55.000 0.00 0.00 0.00 2.24
2510 2596 0.545309 TTGACCCCTGCTGCTCTACT 60.545 55.000 0.00 0.00 0.00 2.57
2511 2597 0.324943 TTTGACCCCTGCTGCTCTAC 59.675 55.000 0.00 0.00 0.00 2.59
2512 2598 1.210478 GATTTGACCCCTGCTGCTCTA 59.790 52.381 0.00 0.00 0.00 2.43
2513 2599 0.034670 GATTTGACCCCTGCTGCTCT 60.035 55.000 0.00 0.00 0.00 4.09
2514 2600 0.322816 TGATTTGACCCCTGCTGCTC 60.323 55.000 0.00 0.00 0.00 4.26
2515 2601 0.333993 ATGATTTGACCCCTGCTGCT 59.666 50.000 0.00 0.00 0.00 4.24
2516 2602 0.743097 GATGATTTGACCCCTGCTGC 59.257 55.000 0.00 0.00 0.00 5.25
2517 2603 1.019673 CGATGATTTGACCCCTGCTG 58.980 55.000 0.00 0.00 0.00 4.41
2518 2604 0.620556 ACGATGATTTGACCCCTGCT 59.379 50.000 0.00 0.00 0.00 4.24
2519 2605 1.017387 GACGATGATTTGACCCCTGC 58.983 55.000 0.00 0.00 0.00 4.85
2520 2606 2.009774 GTGACGATGATTTGACCCCTG 58.990 52.381 0.00 0.00 0.00 4.45
2521 2607 1.628340 TGTGACGATGATTTGACCCCT 59.372 47.619 0.00 0.00 0.00 4.79
2522 2608 2.009774 CTGTGACGATGATTTGACCCC 58.990 52.381 0.00 0.00 0.00 4.95
2523 2609 2.009774 CCTGTGACGATGATTTGACCC 58.990 52.381 0.00 0.00 0.00 4.46
2524 2610 2.416547 CACCTGTGACGATGATTTGACC 59.583 50.000 0.00 0.00 0.00 4.02
2525 2611 3.067106 ACACCTGTGACGATGATTTGAC 58.933 45.455 3.94 0.00 0.00 3.18
2526 2612 3.401033 ACACCTGTGACGATGATTTGA 57.599 42.857 3.94 0.00 0.00 2.69
2527 2613 3.748048 AGAACACCTGTGACGATGATTTG 59.252 43.478 3.94 0.00 0.00 2.32
2528 2614 4.008074 AGAACACCTGTGACGATGATTT 57.992 40.909 3.94 0.00 0.00 2.17
2529 2615 3.685139 AGAACACCTGTGACGATGATT 57.315 42.857 3.94 0.00 0.00 2.57
2530 2616 3.685139 AAGAACACCTGTGACGATGAT 57.315 42.857 3.94 0.00 0.00 2.45
2531 2617 3.390135 GAAAGAACACCTGTGACGATGA 58.610 45.455 3.94 0.00 0.00 2.92
2532 2618 2.155732 CGAAAGAACACCTGTGACGATG 59.844 50.000 3.94 0.00 0.00 3.84
2533 2619 2.404215 CGAAAGAACACCTGTGACGAT 58.596 47.619 3.94 0.00 0.00 3.73
2534 2620 1.537348 CCGAAAGAACACCTGTGACGA 60.537 52.381 3.94 0.00 0.00 4.20
2535 2621 0.859232 CCGAAAGAACACCTGTGACG 59.141 55.000 3.94 0.00 0.00 4.35
2536 2622 1.226746 CCCGAAAGAACACCTGTGAC 58.773 55.000 3.94 0.00 0.00 3.67
2537 2623 0.834612 ACCCGAAAGAACACCTGTGA 59.165 50.000 3.94 0.00 0.00 3.58
2538 2624 2.224209 ACTACCCGAAAGAACACCTGTG 60.224 50.000 0.00 0.00 0.00 3.66
2539 2625 2.044758 ACTACCCGAAAGAACACCTGT 58.955 47.619 0.00 0.00 0.00 4.00
2540 2626 2.413837 CACTACCCGAAAGAACACCTG 58.586 52.381 0.00 0.00 0.00 4.00
2541 2627 1.346722 CCACTACCCGAAAGAACACCT 59.653 52.381 0.00 0.00 0.00 4.00
2542 2628 1.071228 ACCACTACCCGAAAGAACACC 59.929 52.381 0.00 0.00 0.00 4.16
2543 2629 2.140717 CACCACTACCCGAAAGAACAC 58.859 52.381 0.00 0.00 0.00 3.32
2544 2630 2.040939 TCACCACTACCCGAAAGAACA 58.959 47.619 0.00 0.00 0.00 3.18
2545 2631 2.825861 TCACCACTACCCGAAAGAAC 57.174 50.000 0.00 0.00 0.00 3.01
2546 2632 3.170717 AGATCACCACTACCCGAAAGAA 58.829 45.455 0.00 0.00 0.00 2.52
2547 2633 2.816411 AGATCACCACTACCCGAAAGA 58.184 47.619 0.00 0.00 0.00 2.52
2548 2634 3.056107 TCAAGATCACCACTACCCGAAAG 60.056 47.826 0.00 0.00 0.00 2.62
2549 2635 2.901192 TCAAGATCACCACTACCCGAAA 59.099 45.455 0.00 0.00 0.00 3.46
2550 2636 2.496070 CTCAAGATCACCACTACCCGAA 59.504 50.000 0.00 0.00 0.00 4.30
2551 2637 2.100197 CTCAAGATCACCACTACCCGA 58.900 52.381 0.00 0.00 0.00 5.14
2552 2638 1.825474 ACTCAAGATCACCACTACCCG 59.175 52.381 0.00 0.00 0.00 5.28
2553 2639 3.983044 AACTCAAGATCACCACTACCC 57.017 47.619 0.00 0.00 0.00 3.69
2554 2640 4.452455 CACAAACTCAAGATCACCACTACC 59.548 45.833 0.00 0.00 0.00 3.18
2555 2641 5.297547 TCACAAACTCAAGATCACCACTAC 58.702 41.667 0.00 0.00 0.00 2.73
2556 2642 5.545063 TCACAAACTCAAGATCACCACTA 57.455 39.130 0.00 0.00 0.00 2.74
2557 2643 4.422073 TCACAAACTCAAGATCACCACT 57.578 40.909 0.00 0.00 0.00 4.00
2558 2644 4.756642 TCATCACAAACTCAAGATCACCAC 59.243 41.667 0.00 0.00 0.00 4.16
2559 2645 4.756642 GTCATCACAAACTCAAGATCACCA 59.243 41.667 0.00 0.00 0.00 4.17
2560 2646 4.999950 AGTCATCACAAACTCAAGATCACC 59.000 41.667 0.00 0.00 0.00 4.02
2561 2647 6.312426 CCTAGTCATCACAAACTCAAGATCAC 59.688 42.308 0.00 0.00 0.00 3.06
2562 2648 6.211384 TCCTAGTCATCACAAACTCAAGATCA 59.789 38.462 0.00 0.00 0.00 2.92
2563 2649 6.634805 TCCTAGTCATCACAAACTCAAGATC 58.365 40.000 0.00 0.00 0.00 2.75
2564 2650 6.351711 CCTCCTAGTCATCACAAACTCAAGAT 60.352 42.308 0.00 0.00 0.00 2.40
2565 2651 5.047021 CCTCCTAGTCATCACAAACTCAAGA 60.047 44.000 0.00 0.00 0.00 3.02
2566 2652 5.047021 TCCTCCTAGTCATCACAAACTCAAG 60.047 44.000 0.00 0.00 0.00 3.02
2567 2653 4.838423 TCCTCCTAGTCATCACAAACTCAA 59.162 41.667 0.00 0.00 0.00 3.02
2568 2654 4.416516 TCCTCCTAGTCATCACAAACTCA 58.583 43.478 0.00 0.00 0.00 3.41
2569 2655 5.172205 GTTCCTCCTAGTCATCACAAACTC 58.828 45.833 0.00 0.00 0.00 3.01
2570 2656 4.020128 GGTTCCTCCTAGTCATCACAAACT 60.020 45.833 0.00 0.00 0.00 2.66
2571 2657 4.254492 GGTTCCTCCTAGTCATCACAAAC 58.746 47.826 0.00 0.00 0.00 2.93
2572 2658 3.907474 TGGTTCCTCCTAGTCATCACAAA 59.093 43.478 0.00 0.00 37.07 2.83
2573 2659 3.515502 CTGGTTCCTCCTAGTCATCACAA 59.484 47.826 0.00 0.00 37.07 3.33
2574 2660 3.099905 CTGGTTCCTCCTAGTCATCACA 58.900 50.000 0.00 0.00 37.07 3.58
2575 2661 3.366396 TCTGGTTCCTCCTAGTCATCAC 58.634 50.000 0.00 0.00 37.07 3.06
2576 2662 3.269643 TCTCTGGTTCCTCCTAGTCATCA 59.730 47.826 0.00 0.00 37.07 3.07
2577 2663 3.904717 TCTCTGGTTCCTCCTAGTCATC 58.095 50.000 0.00 0.00 37.07 2.92
2578 2664 4.551215 ATCTCTGGTTCCTCCTAGTCAT 57.449 45.455 0.00 0.00 37.07 3.06
2579 2665 4.338795 AATCTCTGGTTCCTCCTAGTCA 57.661 45.455 0.00 0.00 37.07 3.41
2580 2666 5.270893 GAAATCTCTGGTTCCTCCTAGTC 57.729 47.826 0.00 0.00 37.07 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.