Multiple sequence alignment - TraesCS5B01G262500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G262500 chr5B 100.000 2558 0 0 2412 4969 447205769 447203212 0.000000e+00 4724.0
1 TraesCS5B01G262500 chr5B 100.000 2118 0 0 1 2118 447208180 447206063 0.000000e+00 3912.0
2 TraesCS5B01G262500 chr5B 93.380 1133 45 8 998 2104 446411369 446412497 0.000000e+00 1650.0
3 TraesCS5B01G262500 chr5B 90.511 1233 48 21 942 2118 446010403 446009184 0.000000e+00 1565.0
4 TraesCS5B01G262500 chr5B 92.664 1036 49 13 2437 3461 446412968 446413987 0.000000e+00 1467.0
5 TraesCS5B01G262500 chr5B 93.890 802 38 5 4177 4969 446414763 446415562 0.000000e+00 1199.0
6 TraesCS5B01G262500 chr5B 84.968 1244 103 55 2562 3755 446009075 446007866 0.000000e+00 1184.0
7 TraesCS5B01G262500 chr5B 86.064 818 72 16 4177 4969 446830081 446830881 0.000000e+00 841.0
8 TraesCS5B01G262500 chr5B 94.413 179 9 1 3927 4104 446414570 446414748 1.760000e-69 274.0
9 TraesCS5B01G262500 chr5B 86.008 243 19 8 510 738 446010743 446010502 3.840000e-61 246.0
10 TraesCS5B01G262500 chr5B 79.560 318 33 15 449 734 446365529 446365846 1.090000e-46 198.0
11 TraesCS5B01G262500 chr5B 100.000 31 0 0 739 769 446010455 446010425 1.930000e-04 58.4
12 TraesCS5B01G262500 chr5D 93.850 1122 43 6 998 2093 374295336 374296457 0.000000e+00 1666.0
13 TraesCS5B01G262500 chr5D 91.026 1248 50 31 2493 3709 374296534 374297750 0.000000e+00 1628.0
14 TraesCS5B01G262500 chr5D 96.364 330 7 5 1 328 6298161 6297835 5.660000e-149 538.0
15 TraesCS5B01G262500 chr5D 91.691 349 28 1 4174 4522 374312929 374313276 2.690000e-132 483.0
16 TraesCS5B01G262500 chr5D 85.106 329 19 9 435 738 374294810 374295133 4.830000e-80 309.0
17 TraesCS5B01G262500 chr5D 80.102 392 48 17 4516 4899 374313411 374313780 1.060000e-66 265.0
18 TraesCS5B01G262500 chr5D 89.529 191 8 4 3926 4104 374297990 374298180 1.080000e-56 231.0
19 TraesCS5B01G262500 chr5D 100.000 37 0 0 741 777 374295178 374295214 8.930000e-08 69.4
20 TraesCS5B01G262500 chr5A 90.370 1163 62 16 998 2118 476072769 476073923 0.000000e+00 1482.0
21 TraesCS5B01G262500 chr5A 89.771 919 55 20 2557 3469 476074000 476074885 0.000000e+00 1140.0
22 TraesCS5B01G262500 chr5A 89.163 203 17 4 3554 3752 476075046 476075247 1.070000e-61 248.0
23 TraesCS5B01G262500 chr5A 86.992 123 4 3 616 738 476072453 476072563 1.450000e-25 128.0
24 TraesCS5B01G262500 chr3A 82.381 1067 129 21 1084 2108 213256373 213257422 0.000000e+00 874.0
25 TraesCS5B01G262500 chr3A 83.171 719 99 14 2761 3458 213257704 213258421 5.420000e-179 638.0
26 TraesCS5B01G262500 chr3A 92.727 55 4 0 2607 2661 213257547 213257601 4.120000e-11 80.5
27 TraesCS5B01G262500 chr3D 82.203 1062 136 20 1084 2108 174455356 174456401 0.000000e+00 865.0
28 TraesCS5B01G262500 chr3D 90.799 576 32 8 1559 2116 584112531 584111959 0.000000e+00 750.0
29 TraesCS5B01G262500 chr3D 84.050 721 97 15 2754 3458 174456666 174457384 0.000000e+00 678.0
30 TraesCS5B01G262500 chr3D 96.049 329 9 4 1 328 429638927 429639252 2.630000e-147 532.0
31 TraesCS5B01G262500 chr3D 86.842 76 10 0 2607 2682 174456538 174456613 8.860000e-13 86.1
32 TraesCS5B01G262500 chr3B 83.983 718 98 14 2756 3458 252958232 252958947 0.000000e+00 673.0
33 TraesCS5B01G262500 chr3B 84.449 508 53 7 1612 2093 252957445 252957952 1.250000e-130 477.0
34 TraesCS5B01G262500 chr3B 84.435 469 56 12 1084 1549 252956910 252957364 3.530000e-121 446.0
35 TraesCS5B01G262500 chr3B 94.000 50 3 0 2607 2656 252958103 252958152 5.330000e-10 76.8
36 TraesCS5B01G262500 chr2D 96.353 329 8 4 1 328 427977723 427977398 5.660000e-149 538.0
37 TraesCS5B01G262500 chr2D 95.745 329 10 4 1 328 401946077 401946402 1.230000e-145 527.0
38 TraesCS5B01G262500 chr4D 96.353 329 7 5 1 328 108224447 108224123 2.040000e-148 536.0
39 TraesCS5B01G262500 chr4D 96.319 326 6 6 1 323 4741792 4741470 9.470000e-147 531.0
40 TraesCS5B01G262500 chr7D 96.061 330 8 5 1 328 51786581 51786255 2.630000e-147 532.0
41 TraesCS5B01G262500 chr7D 95.758 330 9 5 1 328 11728288 11728614 1.230000e-145 527.0
42 TraesCS5B01G262500 chr7D 89.606 279 26 2 1275 1550 208656588 208656310 7.910000e-93 351.0
43 TraesCS5B01G262500 chr6B 96.037 328 11 2 1 328 641248128 641247803 2.630000e-147 532.0
44 TraesCS5B01G262500 chrUn 85.882 340 37 9 1218 1550 86285713 86286048 7.910000e-93 351.0
45 TraesCS5B01G262500 chr2B 79.375 160 19 9 793 938 245302052 245301893 3.170000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G262500 chr5B 447203212 447208180 4968 True 4318.000000 4724 100.00000 1 4969 2 chr5B.!!$R2 4968
1 TraesCS5B01G262500 chr5B 446411369 446415562 4193 False 1147.500000 1650 93.58675 998 4969 4 chr5B.!!$F3 3971
2 TraesCS5B01G262500 chr5B 446830081 446830881 800 False 841.000000 841 86.06400 4177 4969 1 chr5B.!!$F2 792
3 TraesCS5B01G262500 chr5B 446007866 446010743 2877 True 763.350000 1565 90.37175 510 3755 4 chr5B.!!$R1 3245
4 TraesCS5B01G262500 chr5D 374294810 374298180 3370 False 780.680000 1666 91.90220 435 4104 5 chr5D.!!$F1 3669
5 TraesCS5B01G262500 chr5D 374312929 374313780 851 False 374.000000 483 85.89650 4174 4899 2 chr5D.!!$F2 725
6 TraesCS5B01G262500 chr5A 476072453 476075247 2794 False 749.500000 1482 89.07400 616 3752 4 chr5A.!!$F1 3136
7 TraesCS5B01G262500 chr3A 213256373 213258421 2048 False 530.833333 874 86.09300 1084 3458 3 chr3A.!!$F1 2374
8 TraesCS5B01G262500 chr3D 584111959 584112531 572 True 750.000000 750 90.79900 1559 2116 1 chr3D.!!$R1 557
9 TraesCS5B01G262500 chr3D 174455356 174457384 2028 False 543.033333 865 84.36500 1084 3458 3 chr3D.!!$F2 2374
10 TraesCS5B01G262500 chr3B 252956910 252958947 2037 False 418.200000 673 86.71675 1084 3458 4 chr3B.!!$F1 2374

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 998 0.035439 ATGCGTTCAATCCGGGACTT 60.035 50.0 0.0 0.0 0.0 3.01 F
911 1021 0.036732 CTTAGGTGGACTTGCTGCCA 59.963 55.0 0.0 0.0 0.0 4.92 F
2436 3120 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2821 3589 0.321564 CATTGCCGTGGAAGAGGACA 60.322 55.000 0.0 0.0 0.00 4.02 R
2870 3638 4.382470 CCTGAGAAATGATCGGAAGTCTGT 60.382 45.833 0.0 0.0 0.00 3.41 R
4204 5391 0.038744 CATTCAGCAGGTGTCCCCTT 59.961 55.000 0.0 0.0 42.73 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.827604 GTCATGTCGACCCACTGTG 58.172 57.895 14.12 0.00 38.85 3.66
22 23 0.670546 GTCATGTCGACCCACTGTGG 60.671 60.000 20.01 20.01 38.85 4.17
31 32 4.704833 CCACTGTGGGCCGACTGG 62.705 72.222 24.80 18.26 32.67 4.00
32 33 3.625897 CACTGTGGGCCGACTGGA 61.626 66.667 24.80 3.18 37.49 3.86
33 34 3.314331 ACTGTGGGCCGACTGGAG 61.314 66.667 24.80 14.43 37.49 3.86
34 35 4.767255 CTGTGGGCCGACTGGAGC 62.767 72.222 19.42 0.00 37.49 4.70
36 37 3.075005 GTGGGCCGACTGGAGCTA 61.075 66.667 11.17 0.00 37.49 3.32
37 38 2.284331 TGGGCCGACTGGAGCTAA 60.284 61.111 0.00 0.00 37.49 3.09
38 39 1.689233 TGGGCCGACTGGAGCTAAT 60.689 57.895 0.00 0.00 37.49 1.73
39 40 1.271840 TGGGCCGACTGGAGCTAATT 61.272 55.000 0.00 0.00 37.49 1.40
40 41 0.815615 GGGCCGACTGGAGCTAATTG 60.816 60.000 0.00 0.00 37.49 2.32
41 42 0.815615 GGCCGACTGGAGCTAATTGG 60.816 60.000 0.00 0.00 37.49 3.16
42 43 1.440145 GCCGACTGGAGCTAATTGGC 61.440 60.000 5.52 5.52 37.49 4.52
43 44 0.179000 CCGACTGGAGCTAATTGGCT 59.821 55.000 17.07 17.07 46.11 4.75
50 51 2.772739 AGCTAATTGGCTCGCTGTG 58.227 52.632 10.99 0.00 38.24 3.66
51 52 0.745845 AGCTAATTGGCTCGCTGTGG 60.746 55.000 10.99 0.00 38.24 4.17
52 53 1.718757 GCTAATTGGCTCGCTGTGGG 61.719 60.000 6.53 0.00 0.00 4.61
53 54 1.718757 CTAATTGGCTCGCTGTGGGC 61.719 60.000 4.05 4.05 37.64 5.36
54 55 2.196997 TAATTGGCTCGCTGTGGGCT 62.197 55.000 13.44 0.00 39.13 5.19
55 56 2.196997 AATTGGCTCGCTGTGGGCTA 62.197 55.000 13.44 3.56 39.13 3.93
56 57 2.196997 ATTGGCTCGCTGTGGGCTAA 62.197 55.000 14.26 14.26 39.13 3.09
57 58 2.190578 GGCTCGCTGTGGGCTAAT 59.809 61.111 13.44 0.00 39.13 1.73
58 59 1.452108 GGCTCGCTGTGGGCTAATT 60.452 57.895 13.44 0.00 39.13 1.40
59 60 1.718757 GGCTCGCTGTGGGCTAATTG 61.719 60.000 13.44 0.00 39.13 2.32
60 61 1.026718 GCTCGCTGTGGGCTAATTGT 61.027 55.000 5.68 0.00 39.13 2.71
61 62 1.453155 CTCGCTGTGGGCTAATTGTT 58.547 50.000 0.00 0.00 39.13 2.83
62 63 1.812571 CTCGCTGTGGGCTAATTGTTT 59.187 47.619 0.00 0.00 39.13 2.83
63 64 2.228822 CTCGCTGTGGGCTAATTGTTTT 59.771 45.455 0.00 0.00 39.13 2.43
64 65 2.625790 TCGCTGTGGGCTAATTGTTTTT 59.374 40.909 0.00 0.00 39.13 1.94
65 66 2.730928 CGCTGTGGGCTAATTGTTTTTG 59.269 45.455 0.00 0.00 39.13 2.44
66 67 2.480037 GCTGTGGGCTAATTGTTTTTGC 59.520 45.455 0.00 0.00 38.06 3.68
67 68 3.726607 CTGTGGGCTAATTGTTTTTGCA 58.273 40.909 0.00 0.00 0.00 4.08
68 69 4.125703 CTGTGGGCTAATTGTTTTTGCAA 58.874 39.130 0.00 0.00 0.00 4.08
69 70 4.517285 TGTGGGCTAATTGTTTTTGCAAA 58.483 34.783 8.05 8.05 31.63 3.68
70 71 4.943705 TGTGGGCTAATTGTTTTTGCAAAA 59.056 33.333 20.46 20.46 31.63 2.44
71 72 5.415701 TGTGGGCTAATTGTTTTTGCAAAAA 59.584 32.000 28.85 28.85 35.67 1.94
432 433 9.691362 ATACATGCTTAACACTTTTTAAACCAG 57.309 29.630 0.00 0.00 0.00 4.00
433 434 7.552459 ACATGCTTAACACTTTTTAAACCAGT 58.448 30.769 0.00 0.00 0.00 4.00
453 454 2.654085 CGCGATCGTACGTGGCAT 60.654 61.111 17.81 0.32 39.60 4.40
551 566 0.230515 CGATCCACATGCGTCAATCG 59.769 55.000 0.00 0.00 43.12 3.34
559 574 3.610677 CACATGCGTCAATCGTTACTACA 59.389 43.478 0.00 0.00 42.13 2.74
595 610 8.644374 AACCAGTGGTGCTTCTATATTTTTAA 57.356 30.769 17.56 0.00 35.34 1.52
598 613 9.125026 CCAGTGGTGCTTCTATATTTTTAAGAT 57.875 33.333 0.00 0.00 0.00 2.40
602 617 9.905713 TGGTGCTTCTATATTTTTAAGATCAGT 57.094 29.630 0.00 0.00 0.00 3.41
723 753 3.695022 GACGTGGCGGCGTGATACT 62.695 63.158 9.37 0.00 45.79 2.12
734 764 3.436496 GGCGTGATACTACTTGTCAGAC 58.564 50.000 0.00 0.00 0.00 3.51
787 897 0.951040 CTTGTCTGGTGAACTCGCCC 60.951 60.000 6.84 0.00 45.66 6.13
788 898 2.432628 GTCTGGTGAACTCGCCCG 60.433 66.667 6.84 0.76 45.66 6.13
789 899 4.373116 TCTGGTGAACTCGCCCGC 62.373 66.667 6.84 0.00 45.66 6.13
793 903 3.423154 GTGAACTCGCCCGCCAAG 61.423 66.667 0.00 0.00 0.00 3.61
794 904 3.936203 TGAACTCGCCCGCCAAGT 61.936 61.111 0.00 0.00 0.00 3.16
795 905 2.668550 GAACTCGCCCGCCAAGTT 60.669 61.111 2.67 2.67 36.00 2.66
796 906 2.203294 AACTCGCCCGCCAAGTTT 60.203 55.556 0.00 0.00 29.09 2.66
797 907 1.792118 GAACTCGCCCGCCAAGTTTT 61.792 55.000 4.24 0.00 33.54 2.43
798 908 0.535553 AACTCGCCCGCCAAGTTTTA 60.536 50.000 0.00 0.00 29.09 1.52
799 909 0.535553 ACTCGCCCGCCAAGTTTTAA 60.536 50.000 0.00 0.00 0.00 1.52
800 910 0.594110 CTCGCCCGCCAAGTTTTAAA 59.406 50.000 0.00 0.00 0.00 1.52
801 911 1.001158 CTCGCCCGCCAAGTTTTAAAA 60.001 47.619 0.00 0.00 0.00 1.52
802 912 1.407979 TCGCCCGCCAAGTTTTAAAAA 59.592 42.857 1.31 0.00 0.00 1.94
823 933 5.420725 AAAAATTAGATCAACCCAAGGGC 57.579 39.130 4.70 0.00 39.32 5.19
824 934 4.337264 AAATTAGATCAACCCAAGGGCT 57.663 40.909 4.70 0.00 39.32 5.19
825 935 5.466127 AAATTAGATCAACCCAAGGGCTA 57.534 39.130 4.70 0.00 39.32 3.93
826 936 5.466127 AATTAGATCAACCCAAGGGCTAA 57.534 39.130 4.70 4.96 39.32 3.09
827 937 5.669798 ATTAGATCAACCCAAGGGCTAAT 57.330 39.130 4.70 7.04 39.32 1.73
828 938 3.584733 AGATCAACCCAAGGGCTAATC 57.415 47.619 4.70 5.68 39.32 1.75
829 939 2.175715 AGATCAACCCAAGGGCTAATCC 59.824 50.000 4.70 0.00 39.32 3.01
830 940 1.681229 TCAACCCAAGGGCTAATCCT 58.319 50.000 4.70 0.00 39.32 3.24
831 941 1.564348 TCAACCCAAGGGCTAATCCTC 59.436 52.381 4.70 0.00 39.32 3.71
832 942 1.284785 CAACCCAAGGGCTAATCCTCA 59.715 52.381 4.70 0.00 39.32 3.86
833 943 1.912862 ACCCAAGGGCTAATCCTCAT 58.087 50.000 4.70 0.00 39.32 2.90
834 944 2.217776 ACCCAAGGGCTAATCCTCATT 58.782 47.619 4.70 0.00 39.32 2.57
835 945 2.091665 ACCCAAGGGCTAATCCTCATTG 60.092 50.000 4.70 0.00 39.32 2.82
836 946 2.175499 CCCAAGGGCTAATCCTCATTGA 59.825 50.000 0.00 0.00 35.80 2.57
837 947 3.217626 CCAAGGGCTAATCCTCATTGAC 58.782 50.000 0.00 0.00 35.80 3.18
838 948 3.371917 CCAAGGGCTAATCCTCATTGACA 60.372 47.826 0.00 0.00 35.80 3.58
839 949 4.467769 CAAGGGCTAATCCTCATTGACAT 58.532 43.478 0.00 0.00 35.80 3.06
840 950 4.803329 AGGGCTAATCCTCATTGACATT 57.197 40.909 0.00 0.00 29.56 2.71
841 951 5.134725 AGGGCTAATCCTCATTGACATTT 57.865 39.130 0.00 0.00 29.56 2.32
842 952 5.522641 AGGGCTAATCCTCATTGACATTTT 58.477 37.500 0.00 0.00 29.56 1.82
843 953 5.960202 AGGGCTAATCCTCATTGACATTTTT 59.040 36.000 0.00 0.00 29.56 1.94
871 981 3.708563 AAAAACTCCACGAACACCATG 57.291 42.857 0.00 0.00 0.00 3.66
872 982 0.951558 AAACTCCACGAACACCATGC 59.048 50.000 0.00 0.00 0.00 4.06
873 983 1.227999 AACTCCACGAACACCATGCG 61.228 55.000 0.00 0.00 0.00 4.73
874 984 1.667830 CTCCACGAACACCATGCGT 60.668 57.895 0.00 0.00 39.04 5.24
875 985 1.227704 TCCACGAACACCATGCGTT 60.228 52.632 0.00 0.00 35.90 4.84
876 986 1.206578 CCACGAACACCATGCGTTC 59.793 57.895 13.49 13.49 39.50 3.95
877 987 1.502990 CCACGAACACCATGCGTTCA 61.503 55.000 19.97 0.00 42.35 3.18
878 988 0.306228 CACGAACACCATGCGTTCAA 59.694 50.000 19.97 0.00 42.35 2.69
879 989 1.069296 CACGAACACCATGCGTTCAAT 60.069 47.619 19.97 9.33 42.35 2.57
880 990 1.196808 ACGAACACCATGCGTTCAATC 59.803 47.619 19.97 1.67 42.35 2.67
881 991 1.465689 CGAACACCATGCGTTCAATCC 60.466 52.381 19.97 1.41 42.35 3.01
882 992 0.521291 AACACCATGCGTTCAATCCG 59.479 50.000 0.00 0.00 0.00 4.18
883 993 1.305219 ACACCATGCGTTCAATCCGG 61.305 55.000 0.00 0.00 0.00 5.14
884 994 1.748879 ACCATGCGTTCAATCCGGG 60.749 57.895 0.00 0.00 0.00 5.73
885 995 1.451207 CCATGCGTTCAATCCGGGA 60.451 57.895 0.00 0.00 0.00 5.14
886 996 1.714899 CCATGCGTTCAATCCGGGAC 61.715 60.000 0.00 0.00 0.00 4.46
887 997 0.744414 CATGCGTTCAATCCGGGACT 60.744 55.000 0.00 0.00 0.00 3.85
888 998 0.035439 ATGCGTTCAATCCGGGACTT 60.035 50.000 0.00 0.00 0.00 3.01
889 999 0.953471 TGCGTTCAATCCGGGACTTG 60.953 55.000 0.00 5.91 0.00 3.16
890 1000 0.672401 GCGTTCAATCCGGGACTTGA 60.672 55.000 0.00 14.11 0.00 3.02
891 1001 1.803334 CGTTCAATCCGGGACTTGAA 58.197 50.000 20.80 20.80 38.64 2.69
894 1004 3.502123 TTCAATCCGGGACTTGAACTT 57.498 42.857 20.80 1.90 36.67 2.66
895 1005 4.627284 TTCAATCCGGGACTTGAACTTA 57.373 40.909 20.80 8.05 36.67 2.24
896 1006 4.202245 TCAATCCGGGACTTGAACTTAG 57.798 45.455 15.15 0.00 0.00 2.18
897 1007 3.055385 TCAATCCGGGACTTGAACTTAGG 60.055 47.826 15.15 0.00 0.00 2.69
898 1008 2.019807 TCCGGGACTTGAACTTAGGT 57.980 50.000 0.00 0.00 0.00 3.08
899 1009 1.621814 TCCGGGACTTGAACTTAGGTG 59.378 52.381 0.00 0.00 0.00 4.00
900 1010 1.338769 CCGGGACTTGAACTTAGGTGG 60.339 57.143 0.00 0.00 0.00 4.61
901 1011 1.621814 CGGGACTTGAACTTAGGTGGA 59.378 52.381 0.00 0.00 0.00 4.02
902 1012 2.612221 CGGGACTTGAACTTAGGTGGAC 60.612 54.545 0.00 0.00 0.00 4.02
903 1013 2.638363 GGGACTTGAACTTAGGTGGACT 59.362 50.000 0.00 0.00 0.00 3.85
904 1014 3.072622 GGGACTTGAACTTAGGTGGACTT 59.927 47.826 0.00 0.00 0.00 3.01
905 1015 4.065789 GGACTTGAACTTAGGTGGACTTG 58.934 47.826 0.00 0.00 0.00 3.16
906 1016 3.477530 ACTTGAACTTAGGTGGACTTGC 58.522 45.455 0.00 0.00 0.00 4.01
907 1017 3.136626 ACTTGAACTTAGGTGGACTTGCT 59.863 43.478 0.00 0.00 0.00 3.91
908 1018 3.126001 TGAACTTAGGTGGACTTGCTG 57.874 47.619 0.00 0.00 0.00 4.41
909 1019 1.807142 GAACTTAGGTGGACTTGCTGC 59.193 52.381 0.00 0.00 0.00 5.25
910 1020 0.036875 ACTTAGGTGGACTTGCTGCC 59.963 55.000 0.00 0.00 0.00 4.85
911 1021 0.036732 CTTAGGTGGACTTGCTGCCA 59.963 55.000 0.00 0.00 0.00 4.92
912 1022 0.036732 TTAGGTGGACTTGCTGCCAG 59.963 55.000 0.00 0.00 34.22 4.85
913 1023 3.368571 GGTGGACTTGCTGCCAGC 61.369 66.667 10.45 10.45 44.29 4.85
914 1024 3.368571 GTGGACTTGCTGCCAGCC 61.369 66.667 15.29 0.00 41.51 4.85
915 1025 3.888460 TGGACTTGCTGCCAGCCA 61.888 61.111 15.29 1.40 41.51 4.75
916 1026 2.598394 GGACTTGCTGCCAGCCAA 60.598 61.111 15.29 7.74 41.51 4.52
917 1027 2.647297 GACTTGCTGCCAGCCAAC 59.353 61.111 15.29 0.00 41.51 3.77
918 1028 3.259425 GACTTGCTGCCAGCCAACG 62.259 63.158 15.29 2.20 41.51 4.10
919 1029 4.047059 CTTGCTGCCAGCCAACGG 62.047 66.667 15.29 0.00 41.51 4.44
969 1079 1.466866 CCAATCGAACAGTAGCGTCGA 60.467 52.381 0.00 0.00 37.24 4.20
994 1104 1.472728 CCGCGCCTATAAGAACAACCT 60.473 52.381 0.00 0.00 0.00 3.50
1021 1154 3.194272 AAGCAACCAAGAACGCGCC 62.194 57.895 5.73 0.00 0.00 6.53
1023 1156 2.322081 GCAACCAAGAACGCGCCTA 61.322 57.895 5.73 0.00 0.00 3.93
1024 1157 1.644786 GCAACCAAGAACGCGCCTAT 61.645 55.000 5.73 0.00 0.00 2.57
1025 1158 1.647346 CAACCAAGAACGCGCCTATA 58.353 50.000 5.73 0.00 0.00 1.31
1040 1180 2.094700 GCCTATAAGATCATCGACGGCA 60.095 50.000 0.00 0.00 35.23 5.69
1150 1294 2.875485 GTCACGAGGTCGCTGCTA 59.125 61.111 0.00 0.00 44.43 3.49
1168 1312 1.188871 TACCCCTGCACGACATCACA 61.189 55.000 0.00 0.00 0.00 3.58
1246 1390 3.065575 CAGGTACCTGTCAATCGCC 57.934 57.895 30.57 0.00 39.10 5.54
1889 2138 1.718757 GCGCCAACATCATCCTGGTC 61.719 60.000 0.00 0.00 32.46 4.02
2430 3114 2.584492 TCTCTCTGTGTGTGTGTGTG 57.416 50.000 0.00 0.00 0.00 3.82
2431 3115 1.824852 TCTCTCTGTGTGTGTGTGTGT 59.175 47.619 0.00 0.00 0.00 3.72
2432 3116 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
2433 3117 1.275010 TCTCTGTGTGTGTGTGTGTGT 59.725 47.619 0.00 0.00 0.00 3.72
2434 3118 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
2435 3119 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
2436 3120 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2437 3121 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
2438 3122 1.533299 GTGTGTGTGTGTGTGTGTGAA 59.467 47.619 0.00 0.00 0.00 3.18
2439 3123 2.031595 GTGTGTGTGTGTGTGTGTGAAA 60.032 45.455 0.00 0.00 0.00 2.69
2440 3124 2.618709 TGTGTGTGTGTGTGTGTGAAAA 59.381 40.909 0.00 0.00 0.00 2.29
2441 3125 3.254411 TGTGTGTGTGTGTGTGTGAAAAT 59.746 39.130 0.00 0.00 0.00 1.82
2442 3126 3.607641 GTGTGTGTGTGTGTGTGAAAATG 59.392 43.478 0.00 0.00 0.00 2.32
2443 3127 3.254411 TGTGTGTGTGTGTGTGAAAATGT 59.746 39.130 0.00 0.00 0.00 2.71
2444 3128 3.851403 GTGTGTGTGTGTGTGAAAATGTC 59.149 43.478 0.00 0.00 0.00 3.06
2445 3129 3.755905 TGTGTGTGTGTGTGAAAATGTCT 59.244 39.130 0.00 0.00 0.00 3.41
2446 3130 4.097714 GTGTGTGTGTGTGAAAATGTCTG 58.902 43.478 0.00 0.00 0.00 3.51
2447 3131 3.755905 TGTGTGTGTGTGAAAATGTCTGT 59.244 39.130 0.00 0.00 0.00 3.41
2523 3259 4.345859 ACATTCCGTGGAGTAAACTGAA 57.654 40.909 0.00 0.00 0.00 3.02
2524 3260 4.906618 ACATTCCGTGGAGTAAACTGAAT 58.093 39.130 0.00 0.00 33.41 2.57
2525 3261 4.695455 ACATTCCGTGGAGTAAACTGAATG 59.305 41.667 14.96 14.96 46.31 2.67
2526 3262 4.610605 TTCCGTGGAGTAAACTGAATGA 57.389 40.909 0.00 0.00 0.00 2.57
2527 3263 4.610605 TCCGTGGAGTAAACTGAATGAA 57.389 40.909 0.00 0.00 0.00 2.57
2528 3264 4.312443 TCCGTGGAGTAAACTGAATGAAC 58.688 43.478 0.00 0.00 0.00 3.18
2529 3265 3.435671 CCGTGGAGTAAACTGAATGAACC 59.564 47.826 0.00 0.00 0.00 3.62
2530 3266 4.062293 CGTGGAGTAAACTGAATGAACCA 58.938 43.478 0.00 0.00 0.00 3.67
2578 3334 6.663944 AATTCCAGCGTTTAGTTATCTGAC 57.336 37.500 0.00 0.00 0.00 3.51
2580 3336 3.441222 TCCAGCGTTTAGTTATCTGACGA 59.559 43.478 12.78 0.00 37.00 4.20
2581 3337 4.097437 TCCAGCGTTTAGTTATCTGACGAT 59.903 41.667 12.78 6.25 37.00 3.73
2584 3340 3.489785 GCGTTTAGTTATCTGACGATGGG 59.510 47.826 12.78 0.00 37.00 4.00
2585 3341 4.049186 CGTTTAGTTATCTGACGATGGGG 58.951 47.826 0.00 0.00 37.00 4.96
2586 3342 4.202080 CGTTTAGTTATCTGACGATGGGGA 60.202 45.833 0.00 0.00 37.00 4.81
2588 3344 6.294342 CGTTTAGTTATCTGACGATGGGGATA 60.294 42.308 0.00 0.00 37.00 2.59
2589 3345 7.577046 CGTTTAGTTATCTGACGATGGGGATAT 60.577 40.741 0.00 0.00 37.00 1.63
2591 3347 6.287589 AGTTATCTGACGATGGGGATATTC 57.712 41.667 0.00 0.00 0.00 1.75
2592 3348 5.780282 AGTTATCTGACGATGGGGATATTCA 59.220 40.000 0.00 0.00 0.00 2.57
2735 3499 5.679734 AACAGAGTGTTATTGCAACAGAG 57.320 39.130 0.00 0.00 39.09 3.35
2745 3509 2.275134 TGCAACAGAGCTGAATGGAA 57.725 45.000 4.21 0.00 34.99 3.53
2777 3545 2.068821 ATGCAGGGCCTGATCGTCT 61.069 57.895 37.07 10.62 32.44 4.18
2821 3589 1.990060 CGACATCCCTGGGTGGTCT 60.990 63.158 25.68 7.10 0.00 3.85
2870 3638 3.070878 TGGAACAGTCACTGTAAGCATCA 59.929 43.478 11.89 1.11 44.62 3.07
2926 3710 4.662961 CGAGCTCACGGCACACCA 62.663 66.667 15.40 0.00 44.79 4.17
3451 4246 4.680237 CGGTCCTGCTGCCAACGA 62.680 66.667 0.00 0.00 0.00 3.85
3461 4256 2.202566 GCTGCCAACGATAGGTAAGTC 58.797 52.381 0.00 0.00 43.77 3.01
3471 4280 3.502979 CGATAGGTAAGTCTACAGCTCCC 59.497 52.174 0.00 0.00 0.00 4.30
3486 4295 1.002624 TCCCGTGCAACCAGGAATC 60.003 57.895 0.00 0.00 33.25 2.52
3509 4318 7.687941 TCCAGACTCTGAAACAAAATAATCC 57.312 36.000 7.69 0.00 32.44 3.01
3656 4550 9.877178 ATTTTCAATCTGTAGACTGTAGGTTAG 57.123 33.333 0.00 0.00 0.00 2.34
3658 4552 7.392494 TCAATCTGTAGACTGTAGGTTAGTG 57.608 40.000 0.00 0.00 0.00 2.74
3702 4600 7.900782 ATTGAGGTTGTTGTACAGTGTATAC 57.099 36.000 6.21 8.64 0.00 1.47
3705 4603 6.034161 AGGTTGTTGTACAGTGTATACTCC 57.966 41.667 6.21 13.04 34.07 3.85
3736 4637 2.289694 CCTCATGAACGATATGGGGTCC 60.290 54.545 0.00 0.00 40.59 4.46
3791 4706 3.408634 GGTTCCCATGTGAATATACCGG 58.591 50.000 0.00 0.00 0.00 5.28
3800 4715 6.460814 CCATGTGAATATACCGGAATTTGCAA 60.461 38.462 9.46 0.00 0.00 4.08
3803 4718 6.151985 TGTGAATATACCGGAATTTGCAACTT 59.848 34.615 9.46 0.00 0.00 2.66
3810 4725 4.168760 CCGGAATTTGCAACTTCTTCATC 58.831 43.478 23.70 9.97 0.00 2.92
3811 4726 4.168760 CGGAATTTGCAACTTCTTCATCC 58.831 43.478 23.70 10.23 0.00 3.51
3812 4727 4.321156 CGGAATTTGCAACTTCTTCATCCA 60.321 41.667 23.70 0.00 0.00 3.41
3813 4728 5.166398 GGAATTTGCAACTTCTTCATCCAG 58.834 41.667 23.70 0.00 0.00 3.86
3815 4730 5.796424 ATTTGCAACTTCTTCATCCAGTT 57.204 34.783 0.00 0.00 0.00 3.16
3816 4731 5.596836 TTTGCAACTTCTTCATCCAGTTT 57.403 34.783 0.00 0.00 0.00 2.66
3817 4732 4.836125 TGCAACTTCTTCATCCAGTTTC 57.164 40.909 0.00 0.00 0.00 2.78
3819 4734 4.828939 TGCAACTTCTTCATCCAGTTTCAT 59.171 37.500 0.00 0.00 0.00 2.57
3821 4736 5.182760 GCAACTTCTTCATCCAGTTTCATCT 59.817 40.000 0.00 0.00 0.00 2.90
3822 4737 6.294397 GCAACTTCTTCATCCAGTTTCATCTT 60.294 38.462 0.00 0.00 0.00 2.40
3823 4738 7.655490 CAACTTCTTCATCCAGTTTCATCTTT 58.345 34.615 0.00 0.00 0.00 2.52
3824 4739 7.830099 ACTTCTTCATCCAGTTTCATCTTTT 57.170 32.000 0.00 0.00 0.00 2.27
3825 4740 8.924511 ACTTCTTCATCCAGTTTCATCTTTTA 57.075 30.769 0.00 0.00 0.00 1.52
3826 4741 9.525826 ACTTCTTCATCCAGTTTCATCTTTTAT 57.474 29.630 0.00 0.00 0.00 1.40
3828 4743 9.745018 TTCTTCATCCAGTTTCATCTTTTATCT 57.255 29.630 0.00 0.00 0.00 1.98
3829 4744 9.745018 TCTTCATCCAGTTTCATCTTTTATCTT 57.255 29.630 0.00 0.00 0.00 2.40
3831 4746 9.745018 TTCATCCAGTTTCATCTTTTATCTTCT 57.255 29.630 0.00 0.00 0.00 2.85
3832 4747 9.170734 TCATCCAGTTTCATCTTTTATCTTCTG 57.829 33.333 0.00 0.00 0.00 3.02
3835 4750 9.658799 TCCAGTTTCATCTTTTATCTTCTGTAG 57.341 33.333 0.00 0.00 0.00 2.74
3836 4751 8.887717 CCAGTTTCATCTTTTATCTTCTGTAGG 58.112 37.037 0.00 0.00 0.00 3.18
3837 4752 9.442047 CAGTTTCATCTTTTATCTTCTGTAGGT 57.558 33.333 0.00 0.00 0.00 3.08
3851 4766 9.924010 ATCTTCTGTAGGTTAGTAGTATCTGTT 57.076 33.333 0.00 0.00 0.00 3.16
3852 4767 9.175312 TCTTCTGTAGGTTAGTAGTATCTGTTG 57.825 37.037 0.00 0.00 0.00 3.33
3857 4772 4.961099 AGGTTAGTAGTATCTGTTGGGGTC 59.039 45.833 0.00 0.00 0.00 4.46
3865 4780 4.896482 AGTATCTGTTGGGGTCTAGATCAC 59.104 45.833 5.14 0.69 32.54 3.06
3867 4782 1.137086 CTGTTGGGGTCTAGATCACCG 59.863 57.143 1.92 0.00 34.33 4.94
3869 4784 1.335132 TTGGGGTCTAGATCACCGGC 61.335 60.000 1.92 0.00 34.33 6.13
3873 4788 1.333177 GGTCTAGATCACCGGCAGAT 58.667 55.000 9.56 9.56 0.00 2.90
3876 4791 2.101582 GTCTAGATCACCGGCAGATTGT 59.898 50.000 10.93 5.33 0.00 2.71
3882 4797 3.066291 TCACCGGCAGATTGTACAATT 57.934 42.857 21.63 9.50 0.00 2.32
3885 4800 1.531677 CCGGCAGATTGTACAATTGCG 60.532 52.381 28.92 25.26 36.55 4.85
3891 4806 4.970003 GCAGATTGTACAATTGCGTTATCC 59.030 41.667 25.69 12.34 31.03 2.59
3892 4807 5.448496 GCAGATTGTACAATTGCGTTATCCA 60.448 40.000 25.69 0.14 31.03 3.41
3893 4808 6.194463 CAGATTGTACAATTGCGTTATCCAG 58.806 40.000 21.63 0.10 0.00 3.86
3894 4809 6.037062 CAGATTGTACAATTGCGTTATCCAGA 59.963 38.462 21.63 0.00 0.00 3.86
3895 4810 5.539582 TTGTACAATTGCGTTATCCAGAC 57.460 39.130 3.59 0.00 0.00 3.51
3896 4811 4.570930 TGTACAATTGCGTTATCCAGACA 58.429 39.130 5.05 0.00 0.00 3.41
3897 4812 4.629634 TGTACAATTGCGTTATCCAGACAG 59.370 41.667 5.05 0.00 0.00 3.51
3899 4814 2.679837 CAATTGCGTTATCCAGACAGCT 59.320 45.455 0.00 0.00 0.00 4.24
3900 4815 2.472695 TTGCGTTATCCAGACAGCTT 57.527 45.000 0.00 0.00 0.00 3.74
3901 4816 1.725641 TGCGTTATCCAGACAGCTTG 58.274 50.000 0.00 0.00 0.00 4.01
3902 4817 1.275010 TGCGTTATCCAGACAGCTTGA 59.725 47.619 0.00 0.00 0.00 3.02
3903 4818 2.093500 TGCGTTATCCAGACAGCTTGAT 60.093 45.455 0.00 0.00 31.97 2.57
3905 4820 3.785486 CGTTATCCAGACAGCTTGATGA 58.215 45.455 0.00 0.00 30.05 2.92
3906 4821 4.375272 CGTTATCCAGACAGCTTGATGAT 58.625 43.478 0.00 0.00 30.05 2.45
3907 4822 4.210746 CGTTATCCAGACAGCTTGATGATG 59.789 45.833 0.00 0.00 38.19 3.07
3908 4823 5.363101 GTTATCCAGACAGCTTGATGATGA 58.637 41.667 0.00 0.00 35.75 2.92
3909 4824 4.708576 ATCCAGACAGCTTGATGATGAT 57.291 40.909 0.00 0.00 35.75 2.45
3910 4825 3.805207 TCCAGACAGCTTGATGATGATG 58.195 45.455 0.00 0.00 35.75 3.07
3912 4827 3.810386 CCAGACAGCTTGATGATGATGAG 59.190 47.826 0.00 0.00 35.75 2.90
3913 4828 3.248841 CAGACAGCTTGATGATGATGAGC 59.751 47.826 0.00 0.00 35.75 4.26
3915 4830 3.206964 ACAGCTTGATGATGATGAGCAG 58.793 45.455 0.00 0.00 35.75 4.24
3916 4831 3.118371 ACAGCTTGATGATGATGAGCAGA 60.118 43.478 0.00 0.00 35.75 4.26
3918 4833 5.221661 ACAGCTTGATGATGATGAGCAGATA 60.222 40.000 0.00 0.00 35.75 1.98
3919 4834 5.120986 CAGCTTGATGATGATGAGCAGATAC 59.879 44.000 0.00 0.00 35.86 2.24
3920 4835 4.995487 GCTTGATGATGATGAGCAGATACA 59.005 41.667 0.00 0.00 33.68 2.29
3921 4836 5.107026 GCTTGATGATGATGAGCAGATACAC 60.107 44.000 0.00 0.00 33.68 2.90
3922 4837 5.540400 TGATGATGATGAGCAGATACACA 57.460 39.130 0.00 0.00 0.00 3.72
3923 4838 5.920903 TGATGATGATGAGCAGATACACAA 58.079 37.500 0.00 0.00 0.00 3.33
3924 4839 6.531021 TGATGATGATGAGCAGATACACAAT 58.469 36.000 0.00 0.00 0.00 2.71
3932 5108 4.164796 TGAGCAGATACACAATCCAGGATT 59.835 41.667 9.12 9.12 34.90 3.01
3970 5146 6.639686 CACCTATAAACAATTGCATGATGAGC 59.360 38.462 5.05 0.00 0.00 4.26
4010 5186 5.754890 GTCCCAAGCAATGCCTTTATTATTG 59.245 40.000 0.00 0.00 35.47 1.90
4011 5187 5.058490 CCCAAGCAATGCCTTTATTATTGG 58.942 41.667 0.00 6.62 36.63 3.16
4084 5271 0.110509 CACGATATCCTGCATTGCGC 60.111 55.000 0.00 0.00 42.89 6.09
4100 5287 1.337354 TGCGCTCGTGGTTGATAAGAA 60.337 47.619 9.73 0.00 0.00 2.52
4101 5288 1.060698 GCGCTCGTGGTTGATAAGAAC 59.939 52.381 0.00 0.00 0.00 3.01
4102 5289 1.320555 CGCTCGTGGTTGATAAGAACG 59.679 52.381 0.00 0.00 35.64 3.95
4103 5290 2.602878 GCTCGTGGTTGATAAGAACGA 58.397 47.619 0.00 0.00 40.63 3.85
4104 5291 3.187700 GCTCGTGGTTGATAAGAACGAT 58.812 45.455 0.00 0.00 41.85 3.73
4105 5292 3.617263 GCTCGTGGTTGATAAGAACGATT 59.383 43.478 0.00 0.00 41.85 3.34
4106 5293 4.092968 GCTCGTGGTTGATAAGAACGATTT 59.907 41.667 0.00 0.00 41.85 2.17
4107 5294 5.524511 TCGTGGTTGATAAGAACGATTTG 57.475 39.130 0.00 0.00 38.26 2.32
4108 5295 4.088648 CGTGGTTGATAAGAACGATTTGC 58.911 43.478 0.00 0.00 36.38 3.68
4109 5296 4.142902 CGTGGTTGATAAGAACGATTTGCT 60.143 41.667 0.00 0.00 36.38 3.91
4110 5297 5.324697 GTGGTTGATAAGAACGATTTGCTC 58.675 41.667 0.00 0.00 0.00 4.26
4111 5298 5.000591 TGGTTGATAAGAACGATTTGCTCA 58.999 37.500 0.00 0.00 0.00 4.26
4112 5299 5.471797 TGGTTGATAAGAACGATTTGCTCAA 59.528 36.000 0.00 0.00 0.00 3.02
4113 5300 6.024049 GGTTGATAAGAACGATTTGCTCAAG 58.976 40.000 0.00 0.00 0.00 3.02
4114 5301 6.128282 GGTTGATAAGAACGATTTGCTCAAGA 60.128 38.462 0.00 0.00 0.00 3.02
4115 5302 7.298122 GTTGATAAGAACGATTTGCTCAAGAA 58.702 34.615 0.00 0.00 0.00 2.52
4116 5303 7.433708 TGATAAGAACGATTTGCTCAAGAAA 57.566 32.000 0.00 0.00 0.00 2.52
4117 5304 7.870826 TGATAAGAACGATTTGCTCAAGAAAA 58.129 30.769 0.00 0.00 0.00 2.29
4118 5305 8.349245 TGATAAGAACGATTTGCTCAAGAAAAA 58.651 29.630 0.00 0.00 0.00 1.94
4119 5306 8.733857 ATAAGAACGATTTGCTCAAGAAAAAG 57.266 30.769 0.00 0.00 0.00 2.27
4120 5307 6.377327 AGAACGATTTGCTCAAGAAAAAGA 57.623 33.333 0.00 0.00 0.00 2.52
4121 5308 6.974965 AGAACGATTTGCTCAAGAAAAAGAT 58.025 32.000 0.00 0.00 0.00 2.40
4128 5315 6.801539 TTGCTCAAGAAAAAGATACGACAT 57.198 33.333 0.00 0.00 0.00 3.06
4139 5326 9.651718 GAAAAAGATACGACATGATTTGATACC 57.348 33.333 0.00 0.00 0.00 2.73
4140 5327 8.731275 AAAAGATACGACATGATTTGATACCA 57.269 30.769 0.00 0.00 0.00 3.25
4141 5328 8.731275 AAAGATACGACATGATTTGATACCAA 57.269 30.769 0.00 0.00 0.00 3.67
4142 5329 7.715265 AGATACGACATGATTTGATACCAAC 57.285 36.000 0.00 0.00 30.88 3.77
4143 5330 7.500992 AGATACGACATGATTTGATACCAACT 58.499 34.615 0.00 0.00 30.88 3.16
4144 5331 8.638873 AGATACGACATGATTTGATACCAACTA 58.361 33.333 0.00 0.00 30.88 2.24
4145 5332 8.818141 ATACGACATGATTTGATACCAACTAG 57.182 34.615 0.00 0.00 30.88 2.57
4146 5333 6.873997 ACGACATGATTTGATACCAACTAGA 58.126 36.000 0.00 0.00 30.88 2.43
4147 5334 7.500992 ACGACATGATTTGATACCAACTAGAT 58.499 34.615 0.00 0.00 30.88 1.98
4148 5335 8.638873 ACGACATGATTTGATACCAACTAGATA 58.361 33.333 0.00 0.00 30.88 1.98
4149 5336 8.916654 CGACATGATTTGATACCAACTAGATAC 58.083 37.037 0.00 0.00 30.88 2.24
4150 5337 9.988815 GACATGATTTGATACCAACTAGATACT 57.011 33.333 0.00 0.00 30.88 2.12
4161 5348 7.045126 ACCAACTAGATACTAATCTCTGTGC 57.955 40.000 0.00 0.00 41.71 4.57
4162 5349 6.041069 ACCAACTAGATACTAATCTCTGTGCC 59.959 42.308 0.00 0.00 41.71 5.01
4163 5350 6.266558 CCAACTAGATACTAATCTCTGTGCCT 59.733 42.308 0.00 0.00 41.71 4.75
4164 5351 7.201956 CCAACTAGATACTAATCTCTGTGCCTT 60.202 40.741 0.00 0.00 41.71 4.35
4165 5352 7.519032 ACTAGATACTAATCTCTGTGCCTTC 57.481 40.000 0.00 0.00 41.71 3.46
4166 5353 7.063593 ACTAGATACTAATCTCTGTGCCTTCA 58.936 38.462 0.00 0.00 41.71 3.02
4167 5354 6.798427 AGATACTAATCTCTGTGCCTTCAA 57.202 37.500 0.00 0.00 38.04 2.69
4168 5355 7.187824 AGATACTAATCTCTGTGCCTTCAAA 57.812 36.000 0.00 0.00 38.04 2.69
4169 5356 7.624549 AGATACTAATCTCTGTGCCTTCAAAA 58.375 34.615 0.00 0.00 38.04 2.44
4170 5357 8.103305 AGATACTAATCTCTGTGCCTTCAAAAA 58.897 33.333 0.00 0.00 38.04 1.94
4204 5391 1.600058 ATCTCTGATCCCCTTGGCAA 58.400 50.000 0.00 0.00 0.00 4.52
4205 5392 1.371467 TCTCTGATCCCCTTGGCAAA 58.629 50.000 0.00 0.00 0.00 3.68
4373 5576 7.050377 ACGAAATATCTCCTGAATCATGTGTT 58.950 34.615 0.00 0.00 0.00 3.32
4494 5697 5.648092 CCCAGCTAGTACTAATTTGTGCTTT 59.352 40.000 14.81 1.09 34.81 3.51
4668 6018 2.158325 AGGGGTTGATGAAAAAGCAGGA 60.158 45.455 0.00 0.00 0.00 3.86
4711 6070 8.232913 ACAGAGTAAATCAAACTAAAAAGCCA 57.767 30.769 0.00 0.00 0.00 4.75
4760 6121 4.436332 CCAGGAAAAGCATTTCTAATGCC 58.564 43.478 17.97 5.57 45.59 4.40
4769 6130 4.978083 CATTTCTAATGCCAGAAGTGCT 57.022 40.909 3.50 0.00 36.06 4.40
4794 6155 2.784596 CAATACGTGGCGGCACTG 59.215 61.111 35.12 29.21 0.00 3.66
4933 6296 4.201910 CGGATTGCATTTCCTATTGAACGT 60.202 41.667 12.84 0.00 31.05 3.99
4942 6305 2.369203 TCCTATTGAACGTGTGTTGGGA 59.631 45.455 0.00 0.00 38.78 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.671166 CCACAGTGGGTCGACATGA 59.329 57.895 18.91 0.00 32.67 3.07
14 15 4.704833 CCAGTCGGCCCACAGTGG 62.705 72.222 13.35 13.35 37.25 4.00
15 16 3.596066 CTCCAGTCGGCCCACAGTG 62.596 68.421 2.46 0.00 0.00 3.66
16 17 3.314331 CTCCAGTCGGCCCACAGT 61.314 66.667 2.46 0.00 0.00 3.55
17 18 4.767255 GCTCCAGTCGGCCCACAG 62.767 72.222 2.46 0.00 0.00 3.66
18 19 3.897681 TAGCTCCAGTCGGCCCACA 62.898 63.158 2.46 0.00 0.00 4.17
19 20 1.972660 ATTAGCTCCAGTCGGCCCAC 61.973 60.000 0.00 0.00 0.00 4.61
20 21 1.271840 AATTAGCTCCAGTCGGCCCA 61.272 55.000 0.00 0.00 0.00 5.36
21 22 0.815615 CAATTAGCTCCAGTCGGCCC 60.816 60.000 0.00 0.00 0.00 5.80
22 23 0.815615 CCAATTAGCTCCAGTCGGCC 60.816 60.000 0.00 0.00 0.00 6.13
23 24 1.440145 GCCAATTAGCTCCAGTCGGC 61.440 60.000 0.00 0.00 0.00 5.54
24 25 0.179000 AGCCAATTAGCTCCAGTCGG 59.821 55.000 0.00 0.00 39.48 4.79
25 26 3.768633 AGCCAATTAGCTCCAGTCG 57.231 52.632 0.00 0.00 39.48 4.18
33 34 1.718757 CCCACAGCGAGCCAATTAGC 61.719 60.000 0.00 0.00 0.00 3.09
34 35 1.718757 GCCCACAGCGAGCCAATTAG 61.719 60.000 0.00 0.00 0.00 1.73
35 36 1.748879 GCCCACAGCGAGCCAATTA 60.749 57.895 0.00 0.00 0.00 1.40
36 37 3.064324 GCCCACAGCGAGCCAATT 61.064 61.111 0.00 0.00 0.00 2.32
45 46 2.480037 GCAAAAACAATTAGCCCACAGC 59.520 45.455 0.00 0.00 44.25 4.40
46 47 3.726607 TGCAAAAACAATTAGCCCACAG 58.273 40.909 0.00 0.00 0.00 3.66
47 48 3.827008 TGCAAAAACAATTAGCCCACA 57.173 38.095 0.00 0.00 0.00 4.17
48 49 5.491635 TTTTGCAAAAACAATTAGCCCAC 57.508 34.783 21.94 0.00 0.00 4.61
406 407 9.691362 CTGGTTTAAAAAGTGTTAAGCATGTAT 57.309 29.630 0.00 0.00 0.00 2.29
407 408 8.688151 ACTGGTTTAAAAAGTGTTAAGCATGTA 58.312 29.630 4.43 0.00 0.00 2.29
408 409 7.491048 CACTGGTTTAAAAAGTGTTAAGCATGT 59.509 33.333 18.03 0.00 37.20 3.21
409 410 7.042791 CCACTGGTTTAAAAAGTGTTAAGCATG 60.043 37.037 21.81 0.00 39.75 4.06
410 411 6.983890 CCACTGGTTTAAAAAGTGTTAAGCAT 59.016 34.615 21.81 0.00 39.75 3.79
411 412 6.334202 CCACTGGTTTAAAAAGTGTTAAGCA 58.666 36.000 21.81 1.97 39.75 3.91
412 413 5.233476 GCCACTGGTTTAAAAAGTGTTAAGC 59.767 40.000 21.81 16.65 39.75 3.09
413 414 5.457473 CGCCACTGGTTTAAAAAGTGTTAAG 59.543 40.000 21.81 12.79 39.75 1.85
414 415 5.341617 CGCCACTGGTTTAAAAAGTGTTAA 58.658 37.500 21.81 0.00 39.75 2.01
415 416 4.734108 GCGCCACTGGTTTAAAAAGTGTTA 60.734 41.667 21.81 0.00 39.75 2.41
416 417 3.776340 CGCCACTGGTTTAAAAAGTGTT 58.224 40.909 21.81 0.00 39.75 3.32
417 418 2.480587 GCGCCACTGGTTTAAAAAGTGT 60.481 45.455 21.81 5.48 39.75 3.55
418 419 2.124122 GCGCCACTGGTTTAAAAAGTG 58.876 47.619 18.84 18.84 40.81 3.16
419 420 1.268845 CGCGCCACTGGTTTAAAAAGT 60.269 47.619 0.00 0.00 0.00 2.66
420 421 1.002251 TCGCGCCACTGGTTTAAAAAG 60.002 47.619 0.00 0.00 0.00 2.27
421 422 1.022735 TCGCGCCACTGGTTTAAAAA 58.977 45.000 0.00 0.00 0.00 1.94
422 423 1.198178 GATCGCGCCACTGGTTTAAAA 59.802 47.619 0.00 0.00 0.00 1.52
423 424 0.800012 GATCGCGCCACTGGTTTAAA 59.200 50.000 0.00 0.00 0.00 1.52
424 425 1.355796 CGATCGCGCCACTGGTTTAA 61.356 55.000 0.26 0.00 0.00 1.52
425 426 1.807981 CGATCGCGCCACTGGTTTA 60.808 57.895 0.26 0.00 0.00 2.01
426 427 2.495366 TACGATCGCGCCACTGGTTT 62.495 55.000 16.60 0.00 42.48 3.27
427 428 2.997075 TACGATCGCGCCACTGGTT 61.997 57.895 16.60 0.00 42.48 3.67
428 429 3.445687 TACGATCGCGCCACTGGT 61.446 61.111 16.60 0.00 42.48 4.00
429 430 2.954868 GTACGATCGCGCCACTGG 60.955 66.667 16.60 0.00 42.48 4.00
430 431 3.312504 CGTACGATCGCGCCACTG 61.313 66.667 16.60 1.89 42.48 3.66
431 432 3.807538 ACGTACGATCGCGCCACT 61.808 61.111 24.41 0.00 42.48 4.00
432 433 3.604202 CACGTACGATCGCGCCAC 61.604 66.667 24.41 7.32 42.48 5.01
433 434 4.840288 CCACGTACGATCGCGCCA 62.840 66.667 24.41 0.00 42.48 5.69
514 529 0.385751 CGATGTGGCGTCCAGATAGT 59.614 55.000 8.18 0.00 37.65 2.12
559 574 6.233905 AGCACCACTGGTTTAAAAAGATTT 57.766 33.333 0.00 0.00 31.02 2.17
595 610 7.068103 CCACTCAGAAAGATGTAGTACTGATCT 59.932 40.741 5.39 9.32 34.64 2.75
598 613 5.105716 GCCACTCAGAAAGATGTAGTACTGA 60.106 44.000 5.39 0.00 34.13 3.41
599 614 5.105752 GCCACTCAGAAAGATGTAGTACTG 58.894 45.833 5.39 0.00 0.00 2.74
601 616 4.106197 CGCCACTCAGAAAGATGTAGTAC 58.894 47.826 0.00 0.00 0.00 2.73
602 617 3.762288 ACGCCACTCAGAAAGATGTAGTA 59.238 43.478 0.00 0.00 0.00 1.82
604 619 2.926200 CACGCCACTCAGAAAGATGTAG 59.074 50.000 0.00 0.00 0.00 2.74
610 636 0.868406 GTTCCACGCCACTCAGAAAG 59.132 55.000 0.00 0.00 0.00 2.62
614 640 1.284982 CGAAGTTCCACGCCACTCAG 61.285 60.000 0.00 0.00 0.00 3.35
723 753 1.292223 GCGGCAGGTCTGACAAGTA 59.708 57.895 10.38 0.00 38.95 2.24
801 911 5.093677 AGCCCTTGGGTTGATCTAATTTTT 58.906 37.500 7.61 0.00 0.00 1.94
802 912 4.687976 AGCCCTTGGGTTGATCTAATTTT 58.312 39.130 7.61 0.00 0.00 1.82
803 913 4.337264 AGCCCTTGGGTTGATCTAATTT 57.663 40.909 7.61 0.00 0.00 1.82
804 914 5.466127 TTAGCCCTTGGGTTGATCTAATT 57.534 39.130 7.61 0.00 34.28 1.40
805 915 5.458215 GGATTAGCCCTTGGGTTGATCTAAT 60.458 44.000 20.57 16.39 34.28 1.73
806 916 4.141251 GGATTAGCCCTTGGGTTGATCTAA 60.141 45.833 20.57 13.32 34.28 2.10
807 917 3.394606 GGATTAGCCCTTGGGTTGATCTA 59.605 47.826 20.57 6.59 34.28 1.98
808 918 2.175715 GGATTAGCCCTTGGGTTGATCT 59.824 50.000 20.57 7.40 34.28 2.75
809 919 2.175715 AGGATTAGCCCTTGGGTTGATC 59.824 50.000 15.59 15.59 37.37 2.92
810 920 2.175715 GAGGATTAGCCCTTGGGTTGAT 59.824 50.000 7.61 3.50 36.49 2.57
811 921 1.564348 GAGGATTAGCCCTTGGGTTGA 59.436 52.381 7.61 0.00 36.49 3.18
812 922 1.284785 TGAGGATTAGCCCTTGGGTTG 59.715 52.381 7.61 0.00 36.49 3.77
813 923 1.681229 TGAGGATTAGCCCTTGGGTT 58.319 50.000 7.61 3.76 36.49 4.11
814 924 1.912862 ATGAGGATTAGCCCTTGGGT 58.087 50.000 7.61 0.00 36.49 4.51
815 925 2.175499 TCAATGAGGATTAGCCCTTGGG 59.825 50.000 0.32 0.32 36.49 4.12
816 926 3.217626 GTCAATGAGGATTAGCCCTTGG 58.782 50.000 0.00 0.00 36.49 3.61
817 927 3.889815 TGTCAATGAGGATTAGCCCTTG 58.110 45.455 0.00 0.00 36.49 3.61
818 928 4.803329 ATGTCAATGAGGATTAGCCCTT 57.197 40.909 0.00 0.00 36.49 3.95
819 929 4.803329 AATGTCAATGAGGATTAGCCCT 57.197 40.909 0.00 0.00 39.77 5.19
820 930 5.859205 AAAATGTCAATGAGGATTAGCCC 57.141 39.130 0.00 0.00 37.37 5.19
851 961 2.223711 GCATGGTGTTCGTGGAGTTTTT 60.224 45.455 0.00 0.00 33.10 1.94
852 962 1.336755 GCATGGTGTTCGTGGAGTTTT 59.663 47.619 0.00 0.00 33.10 2.43
853 963 0.951558 GCATGGTGTTCGTGGAGTTT 59.048 50.000 0.00 0.00 33.10 2.66
854 964 1.227999 CGCATGGTGTTCGTGGAGTT 61.228 55.000 0.00 0.00 33.10 3.01
855 965 1.667830 CGCATGGTGTTCGTGGAGT 60.668 57.895 0.00 0.00 33.10 3.85
856 966 1.227999 AACGCATGGTGTTCGTGGAG 61.228 55.000 0.00 0.00 36.49 3.86
857 967 1.225376 GAACGCATGGTGTTCGTGGA 61.225 55.000 6.88 0.00 41.91 4.02
858 968 1.206578 GAACGCATGGTGTTCGTGG 59.793 57.895 6.88 0.00 41.91 4.94
859 969 4.818417 GAACGCATGGTGTTCGTG 57.182 55.556 6.88 0.00 41.91 4.35
863 973 0.521291 CGGATTGAACGCATGGTGTT 59.479 50.000 0.00 0.00 39.06 3.32
864 974 1.305219 CCGGATTGAACGCATGGTGT 61.305 55.000 0.00 0.00 0.00 4.16
865 975 1.429021 CCGGATTGAACGCATGGTG 59.571 57.895 0.00 0.00 0.00 4.17
866 976 1.748879 CCCGGATTGAACGCATGGT 60.749 57.895 0.73 0.00 0.00 3.55
867 977 1.451207 TCCCGGATTGAACGCATGG 60.451 57.895 0.73 0.00 0.00 3.66
868 978 0.744414 AGTCCCGGATTGAACGCATG 60.744 55.000 0.73 0.00 0.00 4.06
869 979 0.035439 AAGTCCCGGATTGAACGCAT 60.035 50.000 0.73 0.00 0.00 4.73
870 980 0.953471 CAAGTCCCGGATTGAACGCA 60.953 55.000 0.73 0.00 0.00 5.24
871 981 0.672401 TCAAGTCCCGGATTGAACGC 60.672 55.000 0.73 0.00 32.66 4.84
872 982 1.803334 TTCAAGTCCCGGATTGAACG 58.197 50.000 19.29 0.00 39.76 3.95
874 984 3.502123 AAGTTCAAGTCCCGGATTGAA 57.498 42.857 19.29 19.29 41.76 2.69
875 985 3.055385 CCTAAGTTCAAGTCCCGGATTGA 60.055 47.826 0.73 7.89 33.73 2.57
876 986 3.270877 CCTAAGTTCAAGTCCCGGATTG 58.729 50.000 0.73 5.25 0.00 2.67
877 987 2.910977 ACCTAAGTTCAAGTCCCGGATT 59.089 45.455 0.73 0.00 0.00 3.01
878 988 2.236395 CACCTAAGTTCAAGTCCCGGAT 59.764 50.000 0.73 0.00 0.00 4.18
879 989 1.621814 CACCTAAGTTCAAGTCCCGGA 59.378 52.381 0.73 0.00 0.00 5.14
880 990 1.338769 CCACCTAAGTTCAAGTCCCGG 60.339 57.143 0.00 0.00 0.00 5.73
881 991 1.621814 TCCACCTAAGTTCAAGTCCCG 59.378 52.381 0.00 0.00 0.00 5.14
882 992 2.638363 AGTCCACCTAAGTTCAAGTCCC 59.362 50.000 0.00 0.00 0.00 4.46
883 993 4.065789 CAAGTCCACCTAAGTTCAAGTCC 58.934 47.826 0.00 0.00 0.00 3.85
884 994 3.498777 GCAAGTCCACCTAAGTTCAAGTC 59.501 47.826 0.00 0.00 0.00 3.01
885 995 3.136626 AGCAAGTCCACCTAAGTTCAAGT 59.863 43.478 0.00 0.00 0.00 3.16
886 996 3.499918 CAGCAAGTCCACCTAAGTTCAAG 59.500 47.826 0.00 0.00 0.00 3.02
887 997 3.476552 CAGCAAGTCCACCTAAGTTCAA 58.523 45.455 0.00 0.00 0.00 2.69
888 998 2.810400 GCAGCAAGTCCACCTAAGTTCA 60.810 50.000 0.00 0.00 0.00 3.18
889 999 1.807142 GCAGCAAGTCCACCTAAGTTC 59.193 52.381 0.00 0.00 0.00 3.01
890 1000 1.545651 GGCAGCAAGTCCACCTAAGTT 60.546 52.381 0.00 0.00 0.00 2.66
891 1001 0.036875 GGCAGCAAGTCCACCTAAGT 59.963 55.000 0.00 0.00 0.00 2.24
892 1002 0.036732 TGGCAGCAAGTCCACCTAAG 59.963 55.000 0.00 0.00 0.00 2.18
893 1003 0.036732 CTGGCAGCAAGTCCACCTAA 59.963 55.000 0.00 0.00 0.00 2.69
894 1004 1.679311 CTGGCAGCAAGTCCACCTA 59.321 57.895 0.00 0.00 0.00 3.08
895 1005 2.433446 CTGGCAGCAAGTCCACCT 59.567 61.111 0.00 0.00 0.00 4.00
896 1006 3.368571 GCTGGCAGCAAGTCCACC 61.369 66.667 33.33 0.49 41.89 4.61
897 1007 3.368571 GGCTGGCAGCAAGTCCAC 61.369 66.667 37.49 17.05 44.75 4.02
898 1008 3.433984 TTGGCTGGCAGCAAGTCCA 62.434 57.895 37.49 24.07 44.75 4.02
899 1009 2.598394 TTGGCTGGCAGCAAGTCC 60.598 61.111 37.49 21.80 44.75 3.85
900 1010 2.647297 GTTGGCTGGCAGCAAGTC 59.353 61.111 37.49 22.16 44.75 3.01
901 1011 3.289834 CGTTGGCTGGCAGCAAGT 61.290 61.111 37.49 0.00 44.75 3.16
902 1012 4.047059 CCGTTGGCTGGCAGCAAG 62.047 66.667 37.49 24.28 44.75 4.01
910 1020 4.657824 ACGTCGACCCGTTGGCTG 62.658 66.667 10.58 0.00 37.96 4.85
911 1021 4.353437 GACGTCGACCCGTTGGCT 62.353 66.667 10.58 0.00 41.98 4.75
913 1023 4.729856 GGGACGTCGACCCGTTGG 62.730 72.222 16.95 0.00 41.98 3.77
930 1040 3.546714 AAACTTGGCGGGGAGGACG 62.547 63.158 0.00 0.00 0.00 4.79
931 1041 1.674651 GAAACTTGGCGGGGAGGAC 60.675 63.158 0.00 0.00 0.00 3.85
932 1042 2.754375 GAAACTTGGCGGGGAGGA 59.246 61.111 0.00 0.00 0.00 3.71
933 1043 2.361230 GGAAACTTGGCGGGGAGG 60.361 66.667 0.00 0.00 0.00 4.30
934 1044 0.611896 ATTGGAAACTTGGCGGGGAG 60.612 55.000 0.00 0.00 0.00 4.30
935 1045 0.610785 GATTGGAAACTTGGCGGGGA 60.611 55.000 0.00 0.00 0.00 4.81
936 1046 1.890174 GATTGGAAACTTGGCGGGG 59.110 57.895 0.00 0.00 0.00 5.73
937 1047 0.958382 TCGATTGGAAACTTGGCGGG 60.958 55.000 0.00 0.00 0.00 6.13
938 1048 0.878416 TTCGATTGGAAACTTGGCGG 59.122 50.000 0.00 0.00 0.00 6.13
939 1049 1.265635 TGTTCGATTGGAAACTTGGCG 59.734 47.619 0.00 0.00 36.14 5.69
969 1079 1.117150 TTCTTATAGGCGCGGGAACT 58.883 50.000 8.83 2.75 0.00 3.01
994 1104 4.272504 CGTTCTTGGTTGCTTCTTGAGTTA 59.727 41.667 0.00 0.00 0.00 2.24
1021 1154 4.686839 TCTGCCGTCGATGATCTTATAG 57.313 45.455 6.11 0.00 0.00 1.31
1023 1156 3.643763 GTTCTGCCGTCGATGATCTTAT 58.356 45.455 6.11 0.00 0.00 1.73
1024 1157 2.540973 CGTTCTGCCGTCGATGATCTTA 60.541 50.000 6.11 0.00 0.00 2.10
1025 1158 1.799181 CGTTCTGCCGTCGATGATCTT 60.799 52.381 6.11 0.00 0.00 2.40
1040 1180 1.228657 GGCTGCTTTCGTTCCGTTCT 61.229 55.000 0.00 0.00 0.00 3.01
1135 1279 2.202623 GGTAGCAGCGACCTCGTG 60.203 66.667 17.06 0.00 42.22 4.35
1150 1294 2.347490 GTGATGTCGTGCAGGGGT 59.653 61.111 6.56 0.00 0.00 4.95
1754 1979 2.381941 GGGGAGCCTCTGCAGGATT 61.382 63.158 15.13 0.00 39.13 3.01
1926 2175 1.280133 CATCCAGGAGCTGAAGGTGAA 59.720 52.381 0.00 0.00 32.44 3.18
2411 3095 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
2412 3096 1.929169 CACACACACACACACAGAGAG 59.071 52.381 0.00 0.00 0.00 3.20
2413 3097 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
2414 3098 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
2415 3099 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
2416 3100 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
2417 3101 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2418 3102 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
2419 3103 1.884235 TTCACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
2420 3104 2.979401 TTTCACACACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
2421 3105 3.254411 ACATTTTCACACACACACACACA 59.746 39.130 0.00 0.00 0.00 3.72
2422 3106 3.832276 ACATTTTCACACACACACACAC 58.168 40.909 0.00 0.00 0.00 3.82
2423 3107 3.755905 AGACATTTTCACACACACACACA 59.244 39.130 0.00 0.00 0.00 3.72
2424 3108 4.097714 CAGACATTTTCACACACACACAC 58.902 43.478 0.00 0.00 0.00 3.82
2425 3109 3.755905 ACAGACATTTTCACACACACACA 59.244 39.130 0.00 0.00 0.00 3.72
2426 3110 4.094887 AGACAGACATTTTCACACACACAC 59.905 41.667 0.00 0.00 0.00 3.82
2427 3111 4.094739 CAGACAGACATTTTCACACACACA 59.905 41.667 0.00 0.00 0.00 3.72
2428 3112 4.094887 ACAGACAGACATTTTCACACACAC 59.905 41.667 0.00 0.00 0.00 3.82
2429 3113 4.260985 ACAGACAGACATTTTCACACACA 58.739 39.130 0.00 0.00 0.00 3.72
2430 3114 4.882671 ACAGACAGACATTTTCACACAC 57.117 40.909 0.00 0.00 0.00 3.82
2431 3115 5.670485 ACTACAGACAGACATTTTCACACA 58.330 37.500 0.00 0.00 0.00 3.72
2432 3116 7.891183 ATACTACAGACAGACATTTTCACAC 57.109 36.000 0.00 0.00 0.00 3.82
2433 3117 8.147704 TGAATACTACAGACAGACATTTTCACA 58.852 33.333 0.00 0.00 0.00 3.58
2434 3118 8.534333 TGAATACTACAGACAGACATTTTCAC 57.466 34.615 0.00 0.00 0.00 3.18
2435 3119 9.554395 TTTGAATACTACAGACAGACATTTTCA 57.446 29.630 0.00 0.00 0.00 2.69
2507 3229 3.435671 GGTTCATTCAGTTTACTCCACGG 59.564 47.826 0.00 0.00 0.00 4.94
2523 3259 2.038820 CCAAAGGGCAAATGTGGTTCAT 59.961 45.455 0.00 0.00 38.57 2.57
2524 3260 1.415659 CCAAAGGGCAAATGTGGTTCA 59.584 47.619 0.00 0.00 0.00 3.18
2525 3261 2.168326 CCAAAGGGCAAATGTGGTTC 57.832 50.000 0.00 0.00 0.00 3.62
2578 3334 7.383029 CACAAATCAAAATGAATATCCCCATCG 59.617 37.037 0.00 0.00 0.00 3.84
2580 3336 6.993902 GCACAAATCAAAATGAATATCCCCAT 59.006 34.615 0.00 0.00 0.00 4.00
2581 3337 6.347696 GCACAAATCAAAATGAATATCCCCA 58.652 36.000 0.00 0.00 0.00 4.96
2584 3340 6.480981 CCTGGCACAAATCAAAATGAATATCC 59.519 38.462 0.00 0.00 38.70 2.59
2585 3341 7.043565 ACCTGGCACAAATCAAAATGAATATC 58.956 34.615 0.00 0.00 38.70 1.63
2586 3342 6.949715 ACCTGGCACAAATCAAAATGAATAT 58.050 32.000 0.00 0.00 38.70 1.28
2588 3344 5.231702 ACCTGGCACAAATCAAAATGAAT 57.768 34.783 0.00 0.00 38.70 2.57
2589 3345 4.502950 GGACCTGGCACAAATCAAAATGAA 60.503 41.667 0.00 0.00 38.70 2.57
2591 3347 3.244146 TGGACCTGGCACAAATCAAAATG 60.244 43.478 0.00 0.00 38.70 2.32
2592 3348 2.971330 TGGACCTGGCACAAATCAAAAT 59.029 40.909 0.00 0.00 38.70 1.82
2735 3499 1.820519 TCAGCCATTGTTCCATTCAGC 59.179 47.619 0.00 0.00 0.00 4.26
2745 3509 1.754803 CCTGCATGAATCAGCCATTGT 59.245 47.619 0.00 0.00 0.00 2.71
2777 3545 0.904865 AGGCTCCTCGTCATCCACAA 60.905 55.000 0.00 0.00 0.00 3.33
2821 3589 0.321564 CATTGCCGTGGAAGAGGACA 60.322 55.000 0.00 0.00 0.00 4.02
2870 3638 4.382470 CCTGAGAAATGATCGGAAGTCTGT 60.382 45.833 0.00 0.00 0.00 3.41
2926 3710 3.376078 CTGCATTGCGCCCAGGTT 61.376 61.111 4.18 0.00 41.33 3.50
3451 4246 3.117587 ACGGGAGCTGTAGACTTACCTAT 60.118 47.826 0.00 0.00 0.00 2.57
3461 4256 1.741770 GGTTGCACGGGAGCTGTAG 60.742 63.158 0.00 0.00 34.99 2.74
3471 4280 0.321564 TCTGGATTCCTGGTTGCACG 60.322 55.000 9.46 0.00 0.00 5.34
3486 4295 6.546395 CGGATTATTTTGTTTCAGAGTCTGG 58.454 40.000 19.99 1.92 31.51 3.86
3509 4318 1.680207 GAGTAAGGGTACTAGGGTGCG 59.320 57.143 0.00 0.00 40.82 5.34
3631 4505 8.867097 ACTAACCTACAGTCTACAGATTGAAAA 58.133 33.333 8.55 0.00 35.63 2.29
3656 4550 9.750783 TCAATATCCTCCTACTAATACTACCAC 57.249 37.037 0.00 0.00 0.00 4.16
3658 4552 9.411189 CCTCAATATCCTCCTACTAATACTACC 57.589 40.741 0.00 0.00 0.00 3.18
3702 4600 1.012086 CATGAGGCAATGACACGGAG 58.988 55.000 0.00 0.00 0.00 4.63
3705 4603 1.201954 CGTTCATGAGGCAATGACACG 60.202 52.381 15.70 15.70 36.31 4.49
3779 4694 6.131544 AGTTGCAAATTCCGGTATATTCAC 57.868 37.500 0.00 0.00 0.00 3.18
3791 4706 5.776744 ACTGGATGAAGAAGTTGCAAATTC 58.223 37.500 27.51 27.51 0.00 2.17
3800 4715 7.830099 AAAAGATGAAACTGGATGAAGAAGT 57.170 32.000 0.00 0.00 0.00 3.01
3803 4718 9.745018 AAGATAAAAGATGAAACTGGATGAAGA 57.255 29.630 0.00 0.00 0.00 2.87
3810 4725 8.887717 CCTACAGAAGATAAAAGATGAAACTGG 58.112 37.037 0.00 0.00 0.00 4.00
3811 4726 9.442047 ACCTACAGAAGATAAAAGATGAAACTG 57.558 33.333 0.00 0.00 0.00 3.16
3825 4740 9.924010 AACAGATACTACTAACCTACAGAAGAT 57.076 33.333 0.00 0.00 0.00 2.40
3826 4741 9.175312 CAACAGATACTACTAACCTACAGAAGA 57.825 37.037 0.00 0.00 0.00 2.87
3827 4742 8.407064 CCAACAGATACTACTAACCTACAGAAG 58.593 40.741 0.00 0.00 0.00 2.85
3828 4743 7.341256 CCCAACAGATACTACTAACCTACAGAA 59.659 40.741 0.00 0.00 0.00 3.02
3829 4744 6.832384 CCCAACAGATACTACTAACCTACAGA 59.168 42.308 0.00 0.00 0.00 3.41
3830 4745 6.040616 CCCCAACAGATACTACTAACCTACAG 59.959 46.154 0.00 0.00 0.00 2.74
3831 4746 5.895534 CCCCAACAGATACTACTAACCTACA 59.104 44.000 0.00 0.00 0.00 2.74
3832 4747 5.896106 ACCCCAACAGATACTACTAACCTAC 59.104 44.000 0.00 0.00 0.00 3.18
3834 4749 4.956582 ACCCCAACAGATACTACTAACCT 58.043 43.478 0.00 0.00 0.00 3.50
3835 4750 4.961099 AGACCCCAACAGATACTACTAACC 59.039 45.833 0.00 0.00 0.00 2.85
3836 4751 7.059156 TCTAGACCCCAACAGATACTACTAAC 58.941 42.308 0.00 0.00 0.00 2.34
3837 4752 7.217028 TCTAGACCCCAACAGATACTACTAA 57.783 40.000 0.00 0.00 0.00 2.24
3838 4753 6.836714 TCTAGACCCCAACAGATACTACTA 57.163 41.667 0.00 0.00 0.00 1.82
3839 4754 5.728937 TCTAGACCCCAACAGATACTACT 57.271 43.478 0.00 0.00 0.00 2.57
3840 4755 6.016108 GTGATCTAGACCCCAACAGATACTAC 60.016 46.154 0.00 0.00 0.00 2.73
3841 4756 6.069331 GTGATCTAGACCCCAACAGATACTA 58.931 44.000 0.00 0.00 0.00 1.82
3842 4757 4.896482 GTGATCTAGACCCCAACAGATACT 59.104 45.833 0.00 0.00 0.00 2.12
3843 4758 4.039366 GGTGATCTAGACCCCAACAGATAC 59.961 50.000 0.00 0.00 0.00 2.24
3844 4759 4.223953 GGTGATCTAGACCCCAACAGATA 58.776 47.826 0.00 0.00 0.00 1.98
3845 4760 3.041946 GGTGATCTAGACCCCAACAGAT 58.958 50.000 0.00 0.00 0.00 2.90
3846 4761 2.467880 GGTGATCTAGACCCCAACAGA 58.532 52.381 0.00 0.00 0.00 3.41
3847 4762 1.137086 CGGTGATCTAGACCCCAACAG 59.863 57.143 0.00 0.00 0.00 3.16
3848 4763 1.191535 CGGTGATCTAGACCCCAACA 58.808 55.000 0.00 0.00 0.00 3.33
3849 4764 0.464452 CCGGTGATCTAGACCCCAAC 59.536 60.000 0.00 0.00 0.00 3.77
3850 4765 1.335132 GCCGGTGATCTAGACCCCAA 61.335 60.000 1.90 0.00 0.00 4.12
3851 4766 1.760875 GCCGGTGATCTAGACCCCA 60.761 63.158 1.90 0.00 0.00 4.96
3852 4767 1.749334 CTGCCGGTGATCTAGACCCC 61.749 65.000 1.90 0.00 0.00 4.95
3857 4772 2.898729 ACAATCTGCCGGTGATCTAG 57.101 50.000 1.90 4.55 0.00 2.43
3865 4780 1.531677 CGCAATTGTACAATCTGCCGG 60.532 52.381 29.38 20.81 34.45 6.13
3867 4782 2.919666 ACGCAATTGTACAATCTGCC 57.080 45.000 29.38 20.06 34.45 4.85
3869 4784 6.037062 TCTGGATAACGCAATTGTACAATCTG 59.963 38.462 21.02 19.51 0.00 2.90
3873 4788 4.998033 TGTCTGGATAACGCAATTGTACAA 59.002 37.500 11.41 11.41 0.00 2.41
3876 4791 3.621268 GCTGTCTGGATAACGCAATTGTA 59.379 43.478 7.40 0.00 0.00 2.41
3882 4797 1.275010 TCAAGCTGTCTGGATAACGCA 59.725 47.619 0.00 0.00 0.00 5.24
3885 4800 5.363101 TCATCATCAAGCTGTCTGGATAAC 58.637 41.667 0.00 0.00 31.20 1.89
3891 4806 3.248841 GCTCATCATCATCAAGCTGTCTG 59.751 47.826 0.00 0.00 0.00 3.51
3892 4807 3.118371 TGCTCATCATCATCAAGCTGTCT 60.118 43.478 0.00 0.00 34.11 3.41
3893 4808 3.203716 TGCTCATCATCATCAAGCTGTC 58.796 45.455 0.00 0.00 34.11 3.51
3894 4809 3.118371 TCTGCTCATCATCATCAAGCTGT 60.118 43.478 0.00 0.00 34.64 4.40
3895 4810 3.467803 TCTGCTCATCATCATCAAGCTG 58.532 45.455 0.00 0.00 34.11 4.24
3896 4811 3.840124 TCTGCTCATCATCATCAAGCT 57.160 42.857 0.00 0.00 34.11 3.74
3897 4812 4.995487 TGTATCTGCTCATCATCATCAAGC 59.005 41.667 0.00 0.00 0.00 4.01
3899 4814 5.920903 TGTGTATCTGCTCATCATCATCAA 58.079 37.500 0.00 0.00 0.00 2.57
3900 4815 5.540400 TGTGTATCTGCTCATCATCATCA 57.460 39.130 0.00 0.00 0.00 3.07
3901 4816 6.092396 GGATTGTGTATCTGCTCATCATCATC 59.908 42.308 0.00 0.00 33.53 2.92
3902 4817 5.938710 GGATTGTGTATCTGCTCATCATCAT 59.061 40.000 0.00 0.00 33.53 2.45
3903 4818 5.163280 TGGATTGTGTATCTGCTCATCATCA 60.163 40.000 0.00 0.00 33.53 3.07
3905 4820 5.300411 TGGATTGTGTATCTGCTCATCAT 57.700 39.130 0.00 0.00 33.53 2.45
3906 4821 4.443881 CCTGGATTGTGTATCTGCTCATCA 60.444 45.833 0.00 0.00 33.53 3.07
3907 4822 4.063689 CCTGGATTGTGTATCTGCTCATC 58.936 47.826 0.00 0.00 33.53 2.92
3908 4823 3.713248 TCCTGGATTGTGTATCTGCTCAT 59.287 43.478 0.00 0.00 33.53 2.90
3909 4824 3.106827 TCCTGGATTGTGTATCTGCTCA 58.893 45.455 0.00 0.00 33.53 4.26
3910 4825 3.827008 TCCTGGATTGTGTATCTGCTC 57.173 47.619 0.00 0.00 33.53 4.26
3912 4827 4.825546 CAATCCTGGATTGTGTATCTGC 57.174 45.455 32.02 0.00 42.89 4.26
3922 4837 4.586001 GGTGCAATCATACAATCCTGGATT 59.414 41.667 16.15 16.15 31.86 3.01
3923 4838 4.147321 GGTGCAATCATACAATCCTGGAT 58.853 43.478 2.57 2.57 0.00 3.41
3924 4839 3.053768 TGGTGCAATCATACAATCCTGGA 60.054 43.478 0.00 0.00 0.00 3.86
3932 5108 6.418946 TGTTTATAGGTGGTGCAATCATACA 58.581 36.000 0.00 0.00 0.00 2.29
3970 5146 1.488957 GACGTTCTGCGACTTGCTG 59.511 57.895 0.00 0.00 46.63 4.41
4010 5186 0.329596 AGATGACAGGGAAAGGTGCC 59.670 55.000 0.00 0.00 34.83 5.01
4011 5187 2.206576 AAGATGACAGGGAAAGGTGC 57.793 50.000 0.00 0.00 0.00 5.01
4056 5238 3.316868 TGCAGGATATCGTGTCGAATGTA 59.683 43.478 22.68 0.00 39.99 2.29
4084 5271 5.550981 CAAATCGTTCTTATCAACCACGAG 58.449 41.667 0.00 0.00 42.69 4.18
4100 5287 6.147164 TCGTATCTTTTTCTTGAGCAAATCGT 59.853 34.615 0.00 0.00 0.00 3.73
4101 5288 6.462949 GTCGTATCTTTTTCTTGAGCAAATCG 59.537 38.462 0.00 0.00 0.00 3.34
4102 5289 7.298122 TGTCGTATCTTTTTCTTGAGCAAATC 58.702 34.615 0.00 0.00 0.00 2.17
4103 5290 7.202016 TGTCGTATCTTTTTCTTGAGCAAAT 57.798 32.000 0.00 0.00 0.00 2.32
4104 5291 6.612247 TGTCGTATCTTTTTCTTGAGCAAA 57.388 33.333 0.00 0.00 0.00 3.68
4105 5292 6.426633 TCATGTCGTATCTTTTTCTTGAGCAA 59.573 34.615 0.00 0.00 0.00 3.91
4106 5293 5.931724 TCATGTCGTATCTTTTTCTTGAGCA 59.068 36.000 0.00 0.00 0.00 4.26
4107 5294 6.408858 TCATGTCGTATCTTTTTCTTGAGC 57.591 37.500 0.00 0.00 0.00 4.26
4108 5295 9.270576 CAAATCATGTCGTATCTTTTTCTTGAG 57.729 33.333 0.00 0.00 0.00 3.02
4109 5296 8.998377 TCAAATCATGTCGTATCTTTTTCTTGA 58.002 29.630 0.00 0.00 0.00 3.02
4110 5297 9.778993 ATCAAATCATGTCGTATCTTTTTCTTG 57.221 29.630 0.00 0.00 0.00 3.02
4113 5300 9.651718 GGTATCAAATCATGTCGTATCTTTTTC 57.348 33.333 0.00 0.00 0.00 2.29
4114 5301 9.173021 TGGTATCAAATCATGTCGTATCTTTTT 57.827 29.630 0.00 0.00 0.00 1.94
4115 5302 8.731275 TGGTATCAAATCATGTCGTATCTTTT 57.269 30.769 0.00 0.00 0.00 2.27
4116 5303 8.612619 GTTGGTATCAAATCATGTCGTATCTTT 58.387 33.333 0.00 0.00 34.28 2.52
4117 5304 7.987458 AGTTGGTATCAAATCATGTCGTATCTT 59.013 33.333 0.00 0.00 34.28 2.40
4118 5305 7.500992 AGTTGGTATCAAATCATGTCGTATCT 58.499 34.615 0.00 0.00 34.28 1.98
4119 5306 7.715265 AGTTGGTATCAAATCATGTCGTATC 57.285 36.000 0.00 0.00 34.28 2.24
4120 5307 8.638873 TCTAGTTGGTATCAAATCATGTCGTAT 58.361 33.333 0.00 0.00 34.28 3.06
4121 5308 8.002984 TCTAGTTGGTATCAAATCATGTCGTA 57.997 34.615 0.00 0.00 34.28 3.43
4139 5326 7.283625 AGGCACAGAGATTAGTATCTAGTTG 57.716 40.000 0.00 0.00 41.23 3.16
4140 5327 7.561722 TGAAGGCACAGAGATTAGTATCTAGTT 59.438 37.037 0.00 0.00 41.23 2.24
4141 5328 7.063593 TGAAGGCACAGAGATTAGTATCTAGT 58.936 38.462 0.00 0.00 41.23 2.57
4142 5329 7.517614 TGAAGGCACAGAGATTAGTATCTAG 57.482 40.000 0.00 0.00 41.23 2.43
4143 5330 7.898014 TTGAAGGCACAGAGATTAGTATCTA 57.102 36.000 0.00 0.00 41.23 1.98
4144 5331 6.798427 TTGAAGGCACAGAGATTAGTATCT 57.202 37.500 0.00 0.00 43.85 1.98
4145 5332 7.849804 TTTTGAAGGCACAGAGATTAGTATC 57.150 36.000 0.00 0.00 0.00 2.24
4175 5362 7.017056 CCAAGGGGATCAGAGATTAGTATCTTT 59.983 40.741 0.00 0.00 37.55 2.52
4204 5391 0.038744 CATTCAGCAGGTGTCCCCTT 59.961 55.000 0.00 0.00 42.73 3.95
4464 5667 6.823689 ACAAATTAGTACTAGCTGGGAACATG 59.176 38.462 0.85 0.00 41.51 3.21
4494 5697 2.319136 AGTTGGAAGCACACGTTACA 57.681 45.000 0.00 0.00 0.00 2.41
4750 6111 3.347216 GGAGCACTTCTGGCATTAGAAA 58.653 45.455 3.35 0.00 36.34 2.52
4933 6296 1.613317 ATCGATCGCCTCCCAACACA 61.613 55.000 11.09 0.00 0.00 3.72
4942 6305 0.940126 GTGCATTTGATCGATCGCCT 59.060 50.000 20.03 4.40 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.