Multiple sequence alignment - TraesCS5B01G261000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G261000 chr5B 100.000 7832 0 0 1 7832 445460168 445452337 0.000000e+00 14464.0
1 TraesCS5B01G261000 chr5B 86.661 1282 118 16 1158 2439 453661298 453662526 0.000000e+00 1371.0
2 TraesCS5B01G261000 chr5B 88.837 215 17 7 3314 3524 214811786 214811997 2.800000e-64 257.0
3 TraesCS5B01G261000 chr5D 95.198 3290 88 19 4133 7389 373834946 373831694 0.000000e+00 5136.0
4 TraesCS5B01G261000 chr5D 97.301 2260 54 2 1089 3341 373838222 373835963 0.000000e+00 3829.0
5 TraesCS5B01G261000 chr5D 85.407 1302 116 19 1153 2439 378145545 378144303 0.000000e+00 1284.0
6 TraesCS5B01G261000 chr5D 92.257 452 24 7 3672 4118 373835573 373835128 1.430000e-176 630.0
7 TraesCS5B01G261000 chr5D 90.249 482 38 7 1 476 373839399 373838921 8.630000e-174 621.0
8 TraesCS5B01G261000 chr5D 93.655 394 23 1 3506 3899 373835961 373835570 8.750000e-164 588.0
9 TraesCS5B01G261000 chr5D 90.909 341 9 9 674 996 373838889 373838553 9.330000e-119 438.0
10 TraesCS5B01G261000 chr5D 89.597 298 17 10 7475 7763 373831145 373830853 4.470000e-97 366.0
11 TraesCS5B01G261000 chr5D 95.683 139 5 1 472 610 241844075 241844212 1.020000e-53 222.0
12 TraesCS5B01G261000 chr5D 95.522 134 6 0 473 606 115924650 115924517 1.710000e-51 215.0
13 TraesCS5B01G261000 chr5D 94.898 98 5 0 7387 7484 373831658 373831561 3.780000e-33 154.0
14 TraesCS5B01G261000 chr5D 93.243 74 4 1 1 73 100648431 100648358 2.990000e-19 108.0
15 TraesCS5B01G261000 chr5D 93.243 74 3 2 1 73 112690437 112690509 2.990000e-19 108.0
16 TraesCS5B01G261000 chr5A 94.524 2776 95 17 4623 7369 475658741 475655994 0.000000e+00 4231.0
17 TraesCS5B01G261000 chr5A 96.978 2217 63 3 1125 3341 475662078 475659866 0.000000e+00 3720.0
18 TraesCS5B01G261000 chr5A 95.440 965 38 6 3539 4500 475659727 475658766 0.000000e+00 1533.0
19 TraesCS5B01G261000 chr5A 88.108 1295 118 10 1152 2439 478885453 478884188 0.000000e+00 1506.0
20 TraesCS5B01G261000 chr5A 87.382 531 39 17 613 1121 475662571 475662047 1.130000e-162 584.0
21 TraesCS5B01G261000 chr5A 88.148 405 25 8 7387 7773 475655669 475655270 1.990000e-125 460.0
22 TraesCS5B01G261000 chr5A 93.617 141 7 2 466 605 492896805 492896666 7.960000e-50 209.0
23 TraesCS5B01G261000 chr7B 84.623 1060 136 18 1721 2777 747220916 747219881 0.000000e+00 1029.0
24 TraesCS5B01G261000 chr7B 87.740 677 67 8 5106 5768 747215991 747215317 0.000000e+00 776.0
25 TraesCS5B01G261000 chr7B 92.268 194 12 3 3337 3527 386104313 386104120 1.000000e-68 272.0
26 TraesCS5B01G261000 chr7B 89.423 208 17 4 3314 3519 361854268 361854472 2.800000e-64 257.0
27 TraesCS5B01G261000 chr7B 96.324 136 3 2 475 609 46995784 46995918 1.020000e-53 222.0
28 TraesCS5B01G261000 chr7B 82.323 198 35 0 1187 1384 747221444 747221247 1.040000e-38 172.0
29 TraesCS5B01G261000 chr7B 84.706 85 9 1 404 484 464539617 464539701 1.810000e-11 82.4
30 TraesCS5B01G261000 chr7B 87.500 56 6 1 6930 6985 747213999 747213945 6.560000e-06 63.9
31 TraesCS5B01G261000 chr7A 86.195 297 36 2 6555 6847 734051879 734051584 4.560000e-82 316.0
32 TraesCS5B01G261000 chr7A 83.513 279 31 6 5559 5823 734052853 734052576 6.070000e-61 246.0
33 TraesCS5B01G261000 chr7A 95.522 134 6 0 471 604 15493956 15493823 1.710000e-51 215.0
34 TraesCS5B01G261000 chr7A 90.000 90 9 0 5225 5314 734052950 734052861 4.970000e-22 117.0
35 TraesCS5B01G261000 chr7A 95.522 67 3 0 1 67 93531651 93531717 2.990000e-19 108.0
36 TraesCS5B01G261000 chrUn 92.268 194 12 3 3337 3527 11412037 11411844 1.000000e-68 272.0
37 TraesCS5B01G261000 chr1D 91.753 194 13 3 3337 3527 74901288 74901095 4.660000e-67 267.0
38 TraesCS5B01G261000 chr4B 91.237 194 14 3 3337 3527 560531554 560531361 2.170000e-65 261.0
39 TraesCS5B01G261000 chr6D 88.837 215 17 7 3317 3527 55367304 55367093 2.800000e-64 257.0
40 TraesCS5B01G261000 chr1B 88.837 215 17 6 3314 3524 281347255 281347466 2.800000e-64 257.0
41 TraesCS5B01G261000 chr1B 97.015 67 2 0 1 67 399069762 399069828 6.420000e-21 113.0
42 TraesCS5B01G261000 chr4D 88.372 215 17 7 3317 3527 325938459 325938249 1.300000e-62 252.0
43 TraesCS5B01G261000 chr3B 95.652 138 5 1 474 611 76508378 76508242 3.680000e-53 220.0
44 TraesCS5B01G261000 chr3B 94.444 72 3 1 1 72 354466142 354466072 8.310000e-20 110.0
45 TraesCS5B01G261000 chr3B 95.522 67 3 0 1 67 631659225 631659291 2.990000e-19 108.0
46 TraesCS5B01G261000 chr2B 97.656 128 3 0 474 601 742469085 742468958 3.680000e-53 220.0
47 TraesCS5B01G261000 chr2B 96.923 130 4 0 474 603 199013725 199013854 1.320000e-52 219.0
48 TraesCS5B01G261000 chr7D 94.853 136 7 0 470 605 567712585 567712450 6.160000e-51 213.0
49 TraesCS5B01G261000 chr2A 76.325 283 46 14 101 366 97304860 97305138 1.770000e-26 132.0
50 TraesCS5B01G261000 chr6B 97.143 70 2 0 1 70 25275898 25275829 1.380000e-22 119.0
51 TraesCS5B01G261000 chr3A 95.775 71 2 1 1 71 707195800 707195731 6.420000e-21 113.0
52 TraesCS5B01G261000 chr2D 95.745 47 2 0 404 450 221650795 221650841 8.430000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G261000 chr5B 445452337 445460168 7831 True 14464.000000 14464 100.000000 1 7832 1 chr5B.!!$R1 7831
1 TraesCS5B01G261000 chr5B 453661298 453662526 1228 False 1371.000000 1371 86.661000 1158 2439 1 chr5B.!!$F2 1281
2 TraesCS5B01G261000 chr5D 373830853 373839399 8546 True 1470.250000 5136 93.008000 1 7763 8 chr5D.!!$R4 7762
3 TraesCS5B01G261000 chr5D 378144303 378145545 1242 True 1284.000000 1284 85.407000 1153 2439 1 chr5D.!!$R3 1286
4 TraesCS5B01G261000 chr5A 475655270 475662571 7301 True 2105.600000 4231 92.494400 613 7773 5 chr5A.!!$R3 7160
5 TraesCS5B01G261000 chr5A 478884188 478885453 1265 True 1506.000000 1506 88.108000 1152 2439 1 chr5A.!!$R1 1287
6 TraesCS5B01G261000 chr7B 747213945 747221444 7499 True 510.225000 1029 85.546500 1187 6985 4 chr7B.!!$R2 5798
7 TraesCS5B01G261000 chr7A 734051584 734052950 1366 True 226.333333 316 86.569333 5225 6847 3 chr7A.!!$R2 1622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 679 0.251916 ATGGCTAGGTTTGCTACGCA 59.748 50.000 0.00 0.00 36.47 5.24 F
842 870 1.069636 CCGAACAAAGCAGAGCAGAAC 60.070 52.381 0.00 0.00 0.00 3.01 F
1087 1363 2.434185 CCGTCATGACCACCCACG 60.434 66.667 20.03 7.05 0.00 4.94 F
1758 2100 2.609002 GCATAATGTCATGCTCGTCACA 59.391 45.455 0.92 0.00 46.35 3.58 F
2812 3168 1.191647 GTACGGCACTTTGACTGAACG 59.808 52.381 0.00 0.00 0.00 3.95 F
3447 3852 2.027745 AGATTCACTCATTGTGCTCCGT 60.028 45.455 0.00 0.00 45.81 4.69 F
4656 7314 0.668535 GAACACTCACAAGCCCCAAC 59.331 55.000 0.00 0.00 0.00 3.77 F
6347 9285 1.264288 CAGCTTTTCCCAACACTCGAC 59.736 52.381 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 2069 0.463654 GACATTATGCGGCAGGGTGA 60.464 55.0 9.25 0.0 0.00 4.02 R
2301 2654 0.537143 GGTTGTGTGCCACATCCTCA 60.537 55.0 19.85 0.0 45.51 3.86 R
2547 2903 0.823460 CACTGGGTTTTGCCTGTGTT 59.177 50.0 0.00 0.0 37.12 3.32 R
3441 3846 2.159226 AGCAAGTGACTACATACGGAGC 60.159 50.0 0.00 0.0 0.00 4.70 R
3702 4229 3.870559 CCTACACCCTCACCCCTATATT 58.129 50.0 0.00 0.0 0.00 1.28 R
4905 7571 0.110295 AAAATTGCCCCAACAAGCCC 59.890 50.0 0.00 0.0 31.96 5.19 R
6418 9356 2.092753 AGATAGGGACAATGTGCTGGTG 60.093 50.0 4.63 0.0 0.00 4.17 R
7402 10817 0.180406 ACCAGCAAGTTTCGACCAGT 59.820 50.0 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 6.589135 ACACCTTATATAAAGAAACGGAGGG 58.411 40.000 0.00 0.00 0.00 4.30
65 66 6.614496 ACCTTATATAAAGAAACGGAGGGAGT 59.386 38.462 0.00 0.00 0.00 3.85
66 67 7.786464 ACCTTATATAAAGAAACGGAGGGAGTA 59.214 37.037 0.00 0.00 0.00 2.59
86 87 7.951245 GGGAGTATATATACTAGCTAATGGCCT 59.049 40.741 22.55 0.00 43.27 5.19
87 88 8.798402 GGAGTATATATACTAGCTAATGGCCTG 58.202 40.741 22.55 0.00 43.27 4.85
110 111 9.935682 CCTGTTACAACAATGACATACATATTC 57.064 33.333 0.00 0.00 38.66 1.75
111 112 9.935682 CTGTTACAACAATGACATACATATTCC 57.064 33.333 0.00 0.00 38.66 3.01
114 115 9.679661 TTACAACAATGACATACATATTCCAGT 57.320 29.630 0.00 0.00 38.38 4.00
120 121 8.469200 CAATGACATACATATTCCAGTGGTTTT 58.531 33.333 9.54 0.00 38.38 2.43
137 138 1.860676 TTTACCTCAGTCGTGTGTGC 58.139 50.000 0.00 0.00 0.00 4.57
163 164 8.328758 CCATATACATTACACCCACCATATTCT 58.671 37.037 0.00 0.00 0.00 2.40
173 174 8.102484 ACACCCACCATATTCTAGATTTTAGT 57.898 34.615 0.00 0.00 0.00 2.24
209 210 4.860022 AGTATGAGCAAGGTAAGCCAAAT 58.140 39.130 0.00 0.00 37.19 2.32
210 211 4.641989 AGTATGAGCAAGGTAAGCCAAATG 59.358 41.667 0.00 0.00 37.19 2.32
268 269 3.466395 TTTGATTTGGGTAGGGGAAGG 57.534 47.619 0.00 0.00 0.00 3.46
282 283 4.488770 AGGGGAAGGCAAGAAACATTTTA 58.511 39.130 0.00 0.00 0.00 1.52
315 316 7.812648 TGAGGTTACAATAAGTTTTGATTCGG 58.187 34.615 5.24 0.00 0.00 4.30
316 317 6.617879 AGGTTACAATAAGTTTTGATTCGGC 58.382 36.000 5.24 0.00 0.00 5.54
329 330 4.291540 TGATTCGGCTGAATTAATGCAC 57.708 40.909 21.52 7.92 44.79 4.57
334 335 0.740737 GCTGAATTAATGCACGGCCT 59.259 50.000 0.00 0.00 0.00 5.19
338 339 3.814625 TGAATTAATGCACGGCCTATGA 58.185 40.909 0.00 0.00 0.00 2.15
384 388 9.832445 ATTTAATACAGACATACAGACCGAAAT 57.168 29.630 0.00 0.00 0.00 2.17
394 398 4.813296 ACAGACCGAAATGAGTGAAAAC 57.187 40.909 0.00 0.00 0.00 2.43
396 400 5.607477 ACAGACCGAAATGAGTGAAAACTA 58.393 37.500 0.00 0.00 0.00 2.24
399 403 7.072030 CAGACCGAAATGAGTGAAAACTAAAG 58.928 38.462 0.00 0.00 0.00 1.85
452 458 8.383318 ACTAAAACATGTCCATATACATCTGC 57.617 34.615 0.00 0.00 38.01 4.26
483 490 7.901283 AGTTAGAACTTCTTATACTCCCTCC 57.099 40.000 0.00 0.00 35.21 4.30
484 491 6.546772 AGTTAGAACTTCTTATACTCCCTCCG 59.453 42.308 0.00 0.00 35.21 4.63
485 492 4.869451 AGAACTTCTTATACTCCCTCCGT 58.131 43.478 0.00 0.00 0.00 4.69
486 493 4.888823 AGAACTTCTTATACTCCCTCCGTC 59.111 45.833 0.00 0.00 0.00 4.79
487 494 3.564264 ACTTCTTATACTCCCTCCGTCC 58.436 50.000 0.00 0.00 0.00 4.79
488 495 2.671896 TCTTATACTCCCTCCGTCCC 57.328 55.000 0.00 0.00 0.00 4.46
489 496 1.854939 TCTTATACTCCCTCCGTCCCA 59.145 52.381 0.00 0.00 0.00 4.37
490 497 2.245546 TCTTATACTCCCTCCGTCCCAA 59.754 50.000 0.00 0.00 0.00 4.12
491 498 3.116862 TCTTATACTCCCTCCGTCCCAAT 60.117 47.826 0.00 0.00 0.00 3.16
492 499 4.106825 TCTTATACTCCCTCCGTCCCAATA 59.893 45.833 0.00 0.00 0.00 1.90
493 500 3.562108 ATACTCCCTCCGTCCCAATAT 57.438 47.619 0.00 0.00 0.00 1.28
494 501 2.191981 ACTCCCTCCGTCCCAATATT 57.808 50.000 0.00 0.00 0.00 1.28
495 502 2.047830 ACTCCCTCCGTCCCAATATTC 58.952 52.381 0.00 0.00 0.00 1.75
496 503 2.330216 CTCCCTCCGTCCCAATATTCT 58.670 52.381 0.00 0.00 0.00 2.40
497 504 2.706190 CTCCCTCCGTCCCAATATTCTT 59.294 50.000 0.00 0.00 0.00 2.52
498 505 2.438021 TCCCTCCGTCCCAATATTCTTG 59.562 50.000 0.00 0.00 0.00 3.02
499 506 2.172717 CCCTCCGTCCCAATATTCTTGT 59.827 50.000 0.00 0.00 0.00 3.16
500 507 3.467803 CCTCCGTCCCAATATTCTTGTC 58.532 50.000 0.00 0.00 0.00 3.18
501 508 3.134804 CCTCCGTCCCAATATTCTTGTCT 59.865 47.826 0.00 0.00 0.00 3.41
502 509 4.384208 CCTCCGTCCCAATATTCTTGTCTT 60.384 45.833 0.00 0.00 0.00 3.01
503 510 5.163343 CCTCCGTCCCAATATTCTTGTCTTA 60.163 44.000 0.00 0.00 0.00 2.10
504 511 5.914033 TCCGTCCCAATATTCTTGTCTTAG 58.086 41.667 0.00 0.00 0.00 2.18
505 512 5.659525 TCCGTCCCAATATTCTTGTCTTAGA 59.340 40.000 0.00 0.00 0.00 2.10
506 513 6.326583 TCCGTCCCAATATTCTTGTCTTAGAT 59.673 38.462 0.00 0.00 0.00 1.98
507 514 6.992715 CCGTCCCAATATTCTTGTCTTAGATT 59.007 38.462 0.00 0.00 0.00 2.40
508 515 7.499232 CCGTCCCAATATTCTTGTCTTAGATTT 59.501 37.037 0.00 0.00 0.00 2.17
509 516 8.338259 CGTCCCAATATTCTTGTCTTAGATTTG 58.662 37.037 0.00 0.00 0.00 2.32
510 517 9.178758 GTCCCAATATTCTTGTCTTAGATTTGT 57.821 33.333 0.00 0.00 0.00 2.83
511 518 9.753674 TCCCAATATTCTTGTCTTAGATTTGTT 57.246 29.630 0.00 0.00 0.00 2.83
520 527 8.717821 TCTTGTCTTAGATTTGTTCAAATACGG 58.282 33.333 10.20 3.42 0.00 4.02
521 528 8.610248 TTGTCTTAGATTTGTTCAAATACGGA 57.390 30.769 10.20 5.23 0.00 4.69
522 529 8.786826 TGTCTTAGATTTGTTCAAATACGGAT 57.213 30.769 10.20 0.00 0.00 4.18
523 530 8.664798 TGTCTTAGATTTGTTCAAATACGGATG 58.335 33.333 10.20 1.78 0.00 3.51
524 531 8.665685 GTCTTAGATTTGTTCAAATACGGATGT 58.334 33.333 10.20 0.00 0.00 3.06
525 532 9.878667 TCTTAGATTTGTTCAAATACGGATGTA 57.121 29.630 10.20 0.00 34.45 2.29
528 535 8.964476 AGATTTGTTCAAATACGGATGTATCT 57.036 30.769 10.20 0.00 40.42 1.98
531 538 9.832445 ATTTGTTCAAATACGGATGTATCTAGT 57.168 29.630 8.73 0.00 40.42 2.57
532 539 9.661563 TTTGTTCAAATACGGATGTATCTAGTT 57.338 29.630 0.00 0.00 40.42 2.24
534 541 9.740239 TGTTCAAATACGGATGTATCTAGTTAC 57.260 33.333 4.30 4.30 40.42 2.50
535 542 8.899776 GTTCAAATACGGATGTATCTAGTTACG 58.100 37.037 6.50 0.00 40.42 3.18
536 543 8.158169 TCAAATACGGATGTATCTAGTTACGT 57.842 34.615 5.54 5.54 40.42 3.57
537 544 8.623903 TCAAATACGGATGTATCTAGTTACGTT 58.376 33.333 0.00 0.00 40.42 3.99
538 545 9.241317 CAAATACGGATGTATCTAGTTACGTTT 57.759 33.333 0.00 0.00 40.42 3.60
539 546 9.807649 AAATACGGATGTATCTAGTTACGTTTT 57.192 29.630 0.00 2.11 40.42 2.43
542 549 7.989826 ACGGATGTATCTAGTTACGTTTTAGT 58.010 34.615 0.00 3.78 0.00 2.24
543 550 7.912250 ACGGATGTATCTAGTTACGTTTTAGTG 59.088 37.037 0.00 0.00 0.00 2.74
544 551 7.912250 CGGATGTATCTAGTTACGTTTTAGTGT 59.088 37.037 0.00 0.00 0.00 3.55
545 552 9.578439 GGATGTATCTAGTTACGTTTTAGTGTT 57.422 33.333 0.00 0.00 0.00 3.32
555 562 9.578439 AGTTACGTTTTAGTGTTAGATACATCC 57.422 33.333 0.00 0.00 39.39 3.51
556 563 8.526681 GTTACGTTTTAGTGTTAGATACATCCG 58.473 37.037 0.00 0.00 39.39 4.18
557 564 6.624423 ACGTTTTAGTGTTAGATACATCCGT 58.376 36.000 0.00 0.00 39.39 4.69
558 565 7.761409 ACGTTTTAGTGTTAGATACATCCGTA 58.239 34.615 0.00 0.00 39.39 4.02
559 566 8.408601 ACGTTTTAGTGTTAGATACATCCGTAT 58.591 33.333 0.00 0.00 41.16 3.06
589 596 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
590 597 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
591 598 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
592 599 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
593 600 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
594 601 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
595 602 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
596 603 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
597 604 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
598 605 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
599 606 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
600 607 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
606 613 4.474303 TGGGACGGAGGGAGTATTTATA 57.526 45.455 0.00 0.00 0.00 0.98
648 655 2.026636 AGGGAGTAACATTTTAGCGGCA 60.027 45.455 1.45 0.00 0.00 5.69
666 673 2.543641 GCAAATGATGGCTAGGTTTGC 58.456 47.619 11.69 11.69 44.99 3.68
668 675 3.381272 GCAAATGATGGCTAGGTTTGCTA 59.619 43.478 16.76 0.00 46.60 3.49
669 676 4.734695 GCAAATGATGGCTAGGTTTGCTAC 60.735 45.833 16.76 0.00 46.60 3.58
670 677 2.309528 TGATGGCTAGGTTTGCTACG 57.690 50.000 0.00 0.00 0.00 3.51
671 678 0.938008 GATGGCTAGGTTTGCTACGC 59.062 55.000 0.00 0.00 0.00 4.42
672 679 0.251916 ATGGCTAGGTTTGCTACGCA 59.748 50.000 0.00 0.00 36.47 5.24
676 683 1.927895 CTAGGTTTGCTACGCAGGAG 58.072 55.000 0.00 0.00 40.61 3.69
695 702 5.350914 CAGGAGTGCAAGTCATTAAAGAGAG 59.649 44.000 0.00 0.00 38.29 3.20
705 717 6.716284 AGTCATTAAAGAGAGAAAAGAGGGG 58.284 40.000 0.00 0.00 0.00 4.79
707 719 7.183657 AGTCATTAAAGAGAGAAAAGAGGGGAT 59.816 37.037 0.00 0.00 0.00 3.85
709 721 8.394040 TCATTAAAGAGAGAAAAGAGGGGATTT 58.606 33.333 0.00 0.00 0.00 2.17
736 748 6.322201 AGCCTAAATAAACTGTGATGAATGGG 59.678 38.462 0.00 0.00 0.00 4.00
842 870 1.069636 CCGAACAAAGCAGAGCAGAAC 60.070 52.381 0.00 0.00 0.00 3.01
907 952 2.973034 ATTCCCCTCCCCTCCCCT 60.973 66.667 0.00 0.00 0.00 4.79
926 971 4.517703 CTCTCCGCGTCGTCCGTC 62.518 72.222 4.92 0.00 39.32 4.79
1052 1099 3.170672 CCCCGATCATGCCCTCCA 61.171 66.667 0.00 0.00 0.00 3.86
1087 1363 2.434185 CCGTCATGACCACCCACG 60.434 66.667 20.03 7.05 0.00 4.94
1727 2069 3.314331 CCTCAGCACCGACCCTGT 61.314 66.667 0.00 0.00 0.00 4.00
1732 2074 4.699522 GCACCGACCCTGTCACCC 62.700 72.222 0.00 0.00 32.09 4.61
1758 2100 2.609002 GCATAATGTCATGCTCGTCACA 59.391 45.455 0.92 0.00 46.35 3.58
1953 2295 5.353678 CAGAGAGATTGTTGAATTGGTCCTC 59.646 44.000 0.00 0.00 0.00 3.71
2028 2376 7.736893 AGCTCTCAAACTTCTTTAAAGTCCTA 58.263 34.615 14.74 0.00 0.00 2.94
2301 2654 7.159201 ACTGGATTTCATCTCAGGGATATTT 57.841 36.000 0.00 0.00 34.17 1.40
2547 2903 4.788679 TGGATGAGTCCTTCGAGTACATA 58.211 43.478 0.00 0.00 45.32 2.29
2712 3068 4.141937 CCTTGTCCTAATGATCAACGGAGA 60.142 45.833 0.00 1.71 0.00 3.71
2812 3168 1.191647 GTACGGCACTTTGACTGAACG 59.808 52.381 0.00 0.00 0.00 3.95
2884 3240 4.141287 CCCAGGTCTTTTTACATGTGTGA 58.859 43.478 9.11 0.00 29.31 3.58
2954 3349 6.983474 TGTTCATCTGAATTTTCTATCGCA 57.017 33.333 0.00 0.00 36.33 5.10
2969 3364 2.118228 TCGCACAGTGCATGTTTTTC 57.882 45.000 25.19 0.00 45.36 2.29
3042 3443 5.180492 TGGTTTCGATGAATGTAGGTTCAAC 59.820 40.000 0.00 0.00 41.09 3.18
3326 3731 4.023980 TCTAGTACTAGTTGGCATGCACT 58.976 43.478 25.58 17.41 34.84 4.40
3342 3747 5.895928 CATGCACTATGCTACCGATATACT 58.104 41.667 2.02 0.00 45.31 2.12
3343 3748 5.562506 TGCACTATGCTACCGATATACTC 57.437 43.478 2.02 0.00 45.31 2.59
3345 3750 4.202030 GCACTATGCTACCGATATACTCCC 60.202 50.000 0.00 0.00 40.96 4.30
3346 3751 5.194432 CACTATGCTACCGATATACTCCCT 58.806 45.833 0.00 0.00 0.00 4.20
3347 3752 5.066634 CACTATGCTACCGATATACTCCCTG 59.933 48.000 0.00 0.00 0.00 4.45
3348 3753 3.520691 TGCTACCGATATACTCCCTGT 57.479 47.619 0.00 0.00 0.00 4.00
3350 3755 3.155501 GCTACCGATATACTCCCTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
3353 3758 2.963782 ACCGATATACTCCCTGTGTTCC 59.036 50.000 0.00 0.00 0.00 3.62
3355 3760 4.141088 ACCGATATACTCCCTGTGTTCCTA 60.141 45.833 0.00 0.00 0.00 2.94
3356 3761 4.831155 CCGATATACTCCCTGTGTTCCTAA 59.169 45.833 0.00 0.00 0.00 2.69
3358 3763 6.014499 CCGATATACTCCCTGTGTTCCTAAAT 60.014 42.308 0.00 0.00 0.00 1.40
3360 3765 8.750298 CGATATACTCCCTGTGTTCCTAAATAT 58.250 37.037 0.00 0.00 0.00 1.28
3363 3768 8.980481 ATACTCCCTGTGTTCCTAAATATTTG 57.020 34.615 11.05 1.40 0.00 2.32
3365 3770 6.884836 ACTCCCTGTGTTCCTAAATATTTGTC 59.115 38.462 11.05 0.00 0.00 3.18
3368 3773 7.947890 TCCCTGTGTTCCTAAATATTTGTCTTT 59.052 33.333 11.05 0.00 0.00 2.52
3369 3774 8.585018 CCCTGTGTTCCTAAATATTTGTCTTTT 58.415 33.333 11.05 0.00 0.00 2.27
3370 3775 9.981114 CCTGTGTTCCTAAATATTTGTCTTTTT 57.019 29.630 11.05 0.00 0.00 1.94
3387 3792 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3388 3793 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
3404 3809 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3405 3810 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
3406 3811 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
3407 3812 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
3408 3813 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
3409 3814 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
3410 3815 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
3411 3816 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
3412 3817 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
3413 3818 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3415 3820 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3434 3839 9.601217 AGACATATTTTAAAGCGTAGATTCACT 57.399 29.630 0.00 0.00 31.23 3.41
3435 3840 9.851043 GACATATTTTAAAGCGTAGATTCACTC 57.149 33.333 0.00 0.00 31.23 3.51
3436 3841 9.378551 ACATATTTTAAAGCGTAGATTCACTCA 57.621 29.630 0.00 0.00 31.23 3.41
3440 3845 7.667043 TTTAAAGCGTAGATTCACTCATTGT 57.333 32.000 0.00 0.00 31.23 2.71
3442 3847 2.932614 AGCGTAGATTCACTCATTGTGC 59.067 45.455 0.00 0.00 45.81 4.57
3443 3848 2.932614 GCGTAGATTCACTCATTGTGCT 59.067 45.455 0.00 0.00 45.81 4.40
3444 3849 3.000724 GCGTAGATTCACTCATTGTGCTC 59.999 47.826 0.00 0.00 45.81 4.26
3445 3850 3.553511 CGTAGATTCACTCATTGTGCTCC 59.446 47.826 0.00 0.00 45.81 4.70
3446 3851 2.625737 AGATTCACTCATTGTGCTCCG 58.374 47.619 0.00 0.00 45.81 4.63
3447 3852 2.027745 AGATTCACTCATTGTGCTCCGT 60.028 45.455 0.00 0.00 45.81 4.69
3448 3853 3.195610 AGATTCACTCATTGTGCTCCGTA 59.804 43.478 0.00 0.00 45.81 4.02
3449 3854 3.610040 TTCACTCATTGTGCTCCGTAT 57.390 42.857 0.00 0.00 45.81 3.06
3450 3855 2.892374 TCACTCATTGTGCTCCGTATG 58.108 47.619 0.00 0.00 45.81 2.39
3451 3856 2.233676 TCACTCATTGTGCTCCGTATGT 59.766 45.455 0.00 0.00 45.81 2.29
3452 3857 3.445805 TCACTCATTGTGCTCCGTATGTA 59.554 43.478 0.00 0.00 45.81 2.29
3453 3858 3.798878 CACTCATTGTGCTCCGTATGTAG 59.201 47.826 0.00 0.00 40.06 2.74
3454 3859 3.447586 ACTCATTGTGCTCCGTATGTAGT 59.552 43.478 0.00 0.00 0.00 2.73
3455 3860 4.041740 TCATTGTGCTCCGTATGTAGTC 57.958 45.455 0.00 0.00 0.00 2.59
3456 3861 3.445805 TCATTGTGCTCCGTATGTAGTCA 59.554 43.478 0.00 0.00 0.00 3.41
3457 3862 2.933495 TGTGCTCCGTATGTAGTCAC 57.067 50.000 0.00 0.00 0.00 3.67
3458 3863 2.443416 TGTGCTCCGTATGTAGTCACT 58.557 47.619 0.00 0.00 0.00 3.41
3459 3864 2.823747 TGTGCTCCGTATGTAGTCACTT 59.176 45.455 0.00 0.00 0.00 3.16
3460 3865 3.179830 GTGCTCCGTATGTAGTCACTTG 58.820 50.000 0.00 0.00 0.00 3.16
3461 3866 2.194271 GCTCCGTATGTAGTCACTTGC 58.806 52.381 0.00 0.00 0.00 4.01
3462 3867 2.159226 GCTCCGTATGTAGTCACTTGCT 60.159 50.000 0.00 0.00 0.00 3.91
3463 3868 3.066342 GCTCCGTATGTAGTCACTTGCTA 59.934 47.826 0.00 0.00 0.00 3.49
3464 3869 4.439700 GCTCCGTATGTAGTCACTTGCTAA 60.440 45.833 0.00 0.00 0.00 3.09
3465 3870 5.647589 CTCCGTATGTAGTCACTTGCTAAA 58.352 41.667 0.00 0.00 0.00 1.85
3466 3871 6.028146 TCCGTATGTAGTCACTTGCTAAAA 57.972 37.500 0.00 0.00 0.00 1.52
3467 3872 6.636705 TCCGTATGTAGTCACTTGCTAAAAT 58.363 36.000 0.00 0.00 0.00 1.82
3468 3873 6.755141 TCCGTATGTAGTCACTTGCTAAAATC 59.245 38.462 0.00 0.00 0.00 2.17
3469 3874 6.757010 CCGTATGTAGTCACTTGCTAAAATCT 59.243 38.462 0.00 0.00 0.00 2.40
3470 3875 7.043325 CCGTATGTAGTCACTTGCTAAAATCTC 60.043 40.741 0.00 0.00 0.00 2.75
3471 3876 7.702772 CGTATGTAGTCACTTGCTAAAATCTCT 59.297 37.037 0.00 0.00 0.00 3.10
3474 3879 8.349568 TGTAGTCACTTGCTAAAATCTCTAGA 57.650 34.615 0.00 0.00 0.00 2.43
3475 3880 8.803235 TGTAGTCACTTGCTAAAATCTCTAGAA 58.197 33.333 0.00 0.00 0.00 2.10
3476 3881 9.640963 GTAGTCACTTGCTAAAATCTCTAGAAA 57.359 33.333 0.00 0.00 0.00 2.52
3477 3882 8.770438 AGTCACTTGCTAAAATCTCTAGAAAG 57.230 34.615 0.00 0.00 37.84 2.62
3478 3883 8.589338 AGTCACTTGCTAAAATCTCTAGAAAGA 58.411 33.333 4.88 0.00 34.93 2.52
3479 3884 8.652463 GTCACTTGCTAAAATCTCTAGAAAGAC 58.348 37.037 4.88 0.00 34.93 3.01
3480 3885 8.367911 TCACTTGCTAAAATCTCTAGAAAGACA 58.632 33.333 4.88 0.00 34.93 3.41
3481 3886 8.993121 CACTTGCTAAAATCTCTAGAAAGACAA 58.007 33.333 4.88 0.00 34.93 3.18
3482 3887 9.561069 ACTTGCTAAAATCTCTAGAAAGACAAA 57.439 29.630 4.88 0.00 34.93 2.83
3498 3903 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
3499 3904 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
3501 3906 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
3515 3920 3.585289 TGGAGGGAGTAGCATACAAAACA 59.415 43.478 0.00 0.00 46.26 2.83
3570 4079 8.267894 ACTTGTCTGCTTGGTTGAGTATATTAT 58.732 33.333 0.00 0.00 0.00 1.28
3571 4080 9.764363 CTTGTCTGCTTGGTTGAGTATATTATA 57.236 33.333 0.00 0.00 0.00 0.98
3668 4177 5.481105 TGGTACAAGTTACTCCAAATACGG 58.519 41.667 0.00 0.00 31.92 4.02
3669 4178 5.011943 TGGTACAAGTTACTCCAAATACGGT 59.988 40.000 0.00 0.00 31.92 4.83
3702 4229 1.135960 TGTTGGGTGTGAGGATGTCA 58.864 50.000 0.00 0.00 0.00 3.58
3768 4298 6.457355 TGTGGCTACTCGTTGTTTCTATTTA 58.543 36.000 0.64 0.00 0.00 1.40
3874 5855 7.541743 TTTTGATCTACGCATGTTTAAAACG 57.458 32.000 0.00 0.00 0.00 3.60
4120 6256 7.281549 TGTCCCAAGTCACTAAAAACTACTTTC 59.718 37.037 0.00 0.00 0.00 2.62
4349 6968 6.964464 TGTAAGCCTTCAACCTATTTCCATA 58.036 36.000 0.00 0.00 0.00 2.74
4468 7096 1.913419 TGACCCATCAACTACCCCTTC 59.087 52.381 0.00 0.00 0.00 3.46
4656 7314 0.668535 GAACACTCACAAGCCCCAAC 59.331 55.000 0.00 0.00 0.00 3.77
4698 7361 8.668353 TCAGTATGAATACTCATTTGCTCAAAC 58.332 33.333 0.00 0.00 45.97 2.93
4702 7365 7.036996 TGAATACTCATTTGCTCAAACAACA 57.963 32.000 0.00 0.00 32.51 3.33
4762 7428 3.693085 AGATGTTCTTTAGCAGTGGCATG 59.307 43.478 0.00 0.00 44.61 4.06
4868 7534 6.073602 GGCTCAAATCAACAAATTGGAAGTTC 60.074 38.462 0.00 0.00 36.39 3.01
4882 7548 2.275318 GAAGTTCGAGGAGGCTTGATG 58.725 52.381 0.00 0.00 0.00 3.07
4905 7571 5.147162 GGACAAGCTGAAATAGTTTTGTCG 58.853 41.667 10.42 0.00 44.71 4.35
5454 8125 6.603599 ACATCAGTAACAGAGAGCACTACATA 59.396 38.462 0.00 0.00 0.00 2.29
5516 8187 4.509230 TGATCAGCTAGCTAATTTCGCAAG 59.491 41.667 18.86 0.52 0.00 4.01
5859 8708 2.569404 ACCATCTCTCACTTTGACTCCC 59.431 50.000 0.00 0.00 0.00 4.30
6075 8930 5.957798 TGCTTCTATCATTGCAGAAAAAGG 58.042 37.500 0.00 0.00 30.68 3.11
6181 9040 1.269448 TGCAAAGAACTGGGAAATCGC 59.731 47.619 0.00 0.00 0.00 4.58
6189 9048 1.812571 ACTGGGAAATCGCATGTTGTC 59.187 47.619 0.32 0.00 38.16 3.18
6196 9055 4.391830 GGAAATCGCATGTTGTCTTCACTA 59.608 41.667 0.00 0.00 0.00 2.74
6347 9285 1.264288 CAGCTTTTCCCAACACTCGAC 59.736 52.381 0.00 0.00 0.00 4.20
6383 9321 5.105797 TGGTGCTGATATCAACCATTGTTTC 60.106 40.000 20.70 3.84 30.42 2.78
6418 9356 4.745837 TGTGCAAATTTAATGGCAAAGC 57.254 36.364 6.20 0.00 38.10 3.51
6419 9357 4.132336 TGTGCAAATTTAATGGCAAAGCA 58.868 34.783 6.20 0.00 38.10 3.91
6565 9504 5.117584 TGTGTACTTGTTTATTCACACGGT 58.882 37.500 0.00 0.00 39.24 4.83
6849 9792 0.112995 AGAATGCTTGGCTGTGGGAA 59.887 50.000 0.00 0.00 0.00 3.97
6850 9793 0.529378 GAATGCTTGGCTGTGGGAAG 59.471 55.000 0.00 0.00 0.00 3.46
6851 9794 0.178953 AATGCTTGGCTGTGGGAAGT 60.179 50.000 0.00 0.00 0.00 3.01
6852 9795 0.896940 ATGCTTGGCTGTGGGAAGTG 60.897 55.000 0.00 0.00 0.00 3.16
6853 9796 2.270986 GCTTGGCTGTGGGAAGTGG 61.271 63.158 0.00 0.00 0.00 4.00
6854 9797 1.604593 CTTGGCTGTGGGAAGTGGG 60.605 63.158 0.00 0.00 0.00 4.61
7062 10170 2.375174 TCACCCATCCTGTTAACTTGCT 59.625 45.455 7.22 0.00 0.00 3.91
7077 10185 4.228912 ACTTGCTGTCGATTCCTTTTTG 57.771 40.909 0.00 0.00 0.00 2.44
7080 10188 2.030893 TGCTGTCGATTCCTTTTTGCTG 60.031 45.455 0.00 0.00 0.00 4.41
7081 10189 2.589014 CTGTCGATTCCTTTTTGCTGC 58.411 47.619 0.00 0.00 0.00 5.25
7104 10212 5.241728 GCTGTTAATGTTCTGTTTCTTCCCT 59.758 40.000 0.00 0.00 0.00 4.20
7105 10213 6.633500 TGTTAATGTTCTGTTTCTTCCCTG 57.367 37.500 0.00 0.00 0.00 4.45
7126 10234 1.299976 GCCCTGTTTGGATCGAGGT 59.700 57.895 0.00 0.00 38.35 3.85
7145 10253 1.069227 GTGCAAACTTCGTGTGATCCC 60.069 52.381 0.00 0.00 0.00 3.85
7225 10333 8.833734 TGTGACCCTGTATATATAGCTAGTACT 58.166 37.037 0.00 0.00 0.00 2.73
7228 10336 9.777297 GACCCTGTATATATAGCTAGTACTACC 57.223 40.741 0.00 0.00 0.00 3.18
7229 10337 9.289049 ACCCTGTATATATAGCTAGTACTACCA 57.711 37.037 0.00 0.00 0.00 3.25
7327 10435 2.170607 GGTGTGACATACAGGCTATGGT 59.829 50.000 4.63 0.00 40.69 3.55
7357 10465 1.212751 GATGTGCGGTTTGGAAGCC 59.787 57.895 0.00 0.00 0.00 4.35
7362 10470 2.642700 CGGTTTGGAAGCCGTTGG 59.357 61.111 6.51 0.00 46.03 3.77
7392 10807 3.388350 TGGTTATTTTTGTTGACCCCCAC 59.612 43.478 0.00 0.00 0.00 4.61
7455 10870 1.143813 CCTCCAGTAATCCCATGGCT 58.856 55.000 6.09 0.00 33.92 4.75
7484 10899 3.365969 GGTTTGAAACATTGGCGGTAGAG 60.366 47.826 10.53 0.00 0.00 2.43
7512 11354 1.079503 CCTGAAGTTGGCTTAGACGC 58.920 55.000 0.00 0.00 34.61 5.19
7518 11360 2.622436 AGTTGGCTTAGACGCATCTTC 58.378 47.619 0.00 0.00 36.29 2.87
7562 11404 1.656095 GTCGCAGAGATTCTTTGGACG 59.344 52.381 6.36 2.87 36.95 4.79
7603 11445 3.363970 CGTCAGGAGATTTGGTTTTGTCG 60.364 47.826 0.00 0.00 0.00 4.35
7604 11446 3.564225 GTCAGGAGATTTGGTTTTGTCGT 59.436 43.478 0.00 0.00 0.00 4.34
7605 11447 3.813166 TCAGGAGATTTGGTTTTGTCGTC 59.187 43.478 0.00 0.00 0.00 4.20
7632 11481 2.757314 AGAAACTAGTACGTACTGGCCC 59.243 50.000 33.23 22.43 38.22 5.80
7680 11529 3.191539 GTGTAGCCGCTGCAGCTC 61.192 66.667 34.22 25.00 41.83 4.09
7705 11555 4.003648 CTGACCTACCTTGCTCGAATTTT 58.996 43.478 0.00 0.00 0.00 1.82
7706 11556 4.394729 TGACCTACCTTGCTCGAATTTTT 58.605 39.130 0.00 0.00 0.00 1.94
7707 11557 4.215399 TGACCTACCTTGCTCGAATTTTTG 59.785 41.667 0.00 0.00 0.00 2.44
7758 11611 1.858091 CAGCACAGTTCAGTCGAGTT 58.142 50.000 0.00 0.00 0.00 3.01
7763 11616 3.309388 CACAGTTCAGTCGAGTTACTGG 58.691 50.000 25.06 15.64 45.69 4.00
7770 11623 6.202954 AGTTCAGTCGAGTTACTGGAATTTTG 59.797 38.462 0.00 0.00 45.69 2.44
7773 11626 4.819630 AGTCGAGTTACTGGAATTTTGCAA 59.180 37.500 0.00 0.00 0.00 4.08
7774 11627 5.298276 AGTCGAGTTACTGGAATTTTGCAAA 59.702 36.000 8.05 8.05 0.00 3.68
7775 11628 5.974751 GTCGAGTTACTGGAATTTTGCAAAA 59.025 36.000 25.76 25.76 0.00 2.44
7776 11629 5.974751 TCGAGTTACTGGAATTTTGCAAAAC 59.025 36.000 26.05 14.51 0.00 2.43
7777 11630 5.108405 CGAGTTACTGGAATTTTGCAAAACG 60.108 40.000 26.05 15.88 33.03 3.60
7778 11631 5.897050 AGTTACTGGAATTTTGCAAAACGA 58.103 33.333 26.05 11.25 33.03 3.85
7779 11632 6.512297 AGTTACTGGAATTTTGCAAAACGAT 58.488 32.000 26.05 15.38 33.03 3.73
7780 11633 6.640907 AGTTACTGGAATTTTGCAAAACGATC 59.359 34.615 26.05 21.66 33.03 3.69
7781 11634 5.200368 ACTGGAATTTTGCAAAACGATCT 57.800 34.783 26.05 7.94 0.00 2.75
7782 11635 4.984161 ACTGGAATTTTGCAAAACGATCTG 59.016 37.500 26.05 19.10 0.00 2.90
7783 11636 5.193663 TGGAATTTTGCAAAACGATCTGA 57.806 34.783 26.05 12.42 0.00 3.27
7784 11637 5.595885 TGGAATTTTGCAAAACGATCTGAA 58.404 33.333 26.05 11.72 0.00 3.02
7785 11638 5.461737 TGGAATTTTGCAAAACGATCTGAAC 59.538 36.000 26.05 12.04 0.00 3.18
7786 11639 5.461737 GGAATTTTGCAAAACGATCTGAACA 59.538 36.000 26.05 0.25 0.00 3.18
7787 11640 6.146021 GGAATTTTGCAAAACGATCTGAACAT 59.854 34.615 26.05 3.67 0.00 2.71
7788 11641 7.328249 GGAATTTTGCAAAACGATCTGAACATA 59.672 33.333 26.05 0.00 0.00 2.29
7789 11642 8.761575 AATTTTGCAAAACGATCTGAACATAT 57.238 26.923 26.05 3.01 0.00 1.78
7790 11643 9.853555 AATTTTGCAAAACGATCTGAACATATA 57.146 25.926 26.05 0.00 0.00 0.86
7792 11645 9.502145 TTTTGCAAAACGATCTGAACATATATC 57.498 29.630 20.46 0.00 0.00 1.63
7793 11646 7.189693 TGCAAAACGATCTGAACATATATCC 57.810 36.000 0.00 0.00 0.00 2.59
7794 11647 6.992123 TGCAAAACGATCTGAACATATATCCT 59.008 34.615 0.00 0.00 0.00 3.24
7795 11648 7.171508 TGCAAAACGATCTGAACATATATCCTC 59.828 37.037 0.00 0.00 0.00 3.71
7796 11649 7.360438 GCAAAACGATCTGAACATATATCCTCC 60.360 40.741 0.00 0.00 0.00 4.30
7797 11650 5.568685 ACGATCTGAACATATATCCTCCG 57.431 43.478 0.00 0.00 0.00 4.63
7798 11651 5.254115 ACGATCTGAACATATATCCTCCGA 58.746 41.667 0.00 0.00 0.00 4.55
7799 11652 5.888724 ACGATCTGAACATATATCCTCCGAT 59.111 40.000 0.00 0.00 0.00 4.18
7800 11653 6.183360 ACGATCTGAACATATATCCTCCGATG 60.183 42.308 0.00 0.00 0.00 3.84
7801 11654 5.921962 TCTGAACATATATCCTCCGATGG 57.078 43.478 0.00 0.00 0.00 3.51
7802 11655 5.580022 TCTGAACATATATCCTCCGATGGA 58.420 41.667 0.00 0.00 40.82 3.41
7804 11657 6.097412 TCTGAACATATATCCTCCGATGGATG 59.903 42.308 16.11 6.47 45.58 3.51
7805 11658 4.679373 ACATATATCCTCCGATGGATGC 57.321 45.455 16.11 0.00 45.58 3.91
7806 11659 4.033009 ACATATATCCTCCGATGGATGCA 58.967 43.478 16.11 0.00 45.58 3.96
7807 11660 4.141846 ACATATATCCTCCGATGGATGCAC 60.142 45.833 16.11 0.00 45.58 4.57
7808 11661 0.603065 TATCCTCCGATGGATGCACG 59.397 55.000 16.11 0.00 45.58 5.34
7809 11662 2.721971 ATCCTCCGATGGATGCACGC 62.722 60.000 8.09 0.00 44.48 5.34
7810 11663 2.202919 CTCCGATGGATGCACGCA 60.203 61.111 0.00 0.00 0.00 5.24
7811 11664 2.511373 TCCGATGGATGCACGCAC 60.511 61.111 0.00 0.00 0.00 5.34
7812 11665 3.576356 CCGATGGATGCACGCACC 61.576 66.667 0.00 0.00 0.00 5.01
7813 11666 2.819154 CGATGGATGCACGCACCA 60.819 61.111 13.30 13.30 38.09 4.17
7814 11667 2.397754 CGATGGATGCACGCACCAA 61.398 57.895 14.44 0.00 37.24 3.67
7815 11668 1.137404 GATGGATGCACGCACCAAC 59.863 57.895 14.44 9.92 37.24 3.77
7816 11669 1.585267 GATGGATGCACGCACCAACA 61.585 55.000 14.44 4.03 37.24 3.33
7817 11670 1.177895 ATGGATGCACGCACCAACAA 61.178 50.000 14.44 0.00 37.24 2.83
7818 11671 1.361993 GGATGCACGCACCAACAAA 59.638 52.632 0.00 0.00 0.00 2.83
7819 11672 0.664166 GGATGCACGCACCAACAAAG 60.664 55.000 0.00 0.00 0.00 2.77
7820 11673 1.277495 GATGCACGCACCAACAAAGC 61.277 55.000 0.00 0.00 0.00 3.51
7821 11674 1.737355 ATGCACGCACCAACAAAGCT 61.737 50.000 0.00 0.00 0.00 3.74
7822 11675 1.098129 TGCACGCACCAACAAAGCTA 61.098 50.000 0.00 0.00 0.00 3.32
7823 11676 0.660300 GCACGCACCAACAAAGCTAC 60.660 55.000 0.00 0.00 0.00 3.58
7824 11677 0.384230 CACGCACCAACAAAGCTACG 60.384 55.000 0.00 0.00 0.00 3.51
7825 11678 1.206578 CGCACCAACAAAGCTACGG 59.793 57.895 0.00 0.00 0.00 4.02
7826 11679 1.225376 CGCACCAACAAAGCTACGGA 61.225 55.000 0.00 0.00 0.00 4.69
7827 11680 0.237498 GCACCAACAAAGCTACGGAC 59.763 55.000 0.00 0.00 0.00 4.79
7828 11681 0.511221 CACCAACAAAGCTACGGACG 59.489 55.000 0.00 0.00 0.00 4.79
7829 11682 1.226030 ACCAACAAAGCTACGGACGC 61.226 55.000 0.00 0.00 0.00 5.19
7830 11683 1.495951 CAACAAAGCTACGGACGCC 59.504 57.895 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 7.641249 AGCTAGTATATATACTCCCTCCGTTT 58.359 38.462 25.29 4.35 42.31 3.60
59 60 7.951245 GGCCATTAGCTAGTATATATACTCCCT 59.049 40.741 25.29 22.34 39.43 4.20
62 63 9.357161 ACAGGCCATTAGCTAGTATATATACTC 57.643 37.037 25.29 14.22 39.43 2.59
66 67 9.488762 TGTAACAGGCCATTAGCTAGTATATAT 57.511 33.333 5.01 0.00 43.05 0.86
86 87 9.454859 TGGAATATGTATGTCATTGTTGTAACA 57.545 29.630 0.00 0.00 37.91 2.41
87 88 9.935682 CTGGAATATGTATGTCATTGTTGTAAC 57.064 33.333 0.00 0.00 37.91 2.50
90 91 7.067372 CCACTGGAATATGTATGTCATTGTTGT 59.933 37.037 0.00 0.00 37.91 3.32
110 111 2.224209 ACGACTGAGGTAAAACCACTGG 60.224 50.000 0.00 0.00 41.95 4.00
111 112 2.800544 CACGACTGAGGTAAAACCACTG 59.199 50.000 0.00 0.00 41.95 3.66
114 115 2.168936 ACACACGACTGAGGTAAAACCA 59.831 45.455 0.00 0.00 41.95 3.67
120 121 1.110518 TGGCACACACGACTGAGGTA 61.111 55.000 0.00 0.00 0.00 3.08
137 138 8.328758 AGAATATGGTGGGTGTAATGTATATGG 58.671 37.037 0.00 0.00 0.00 2.74
173 174 8.896744 CCTTGCTCATACTCAATTCAAATCTTA 58.103 33.333 0.00 0.00 0.00 2.10
183 184 4.080356 TGGCTTACCTTGCTCATACTCAAT 60.080 41.667 0.00 0.00 36.63 2.57
195 196 6.279882 TCAAAACTTCATTTGGCTTACCTTG 58.720 36.000 0.48 0.00 40.04 3.61
209 210 5.930837 ACCTCAACCAAATCAAAACTTCA 57.069 34.783 0.00 0.00 0.00 3.02
210 211 7.413988 CCAAAACCTCAACCAAATCAAAACTTC 60.414 37.037 0.00 0.00 0.00 3.01
227 228 8.575649 TCAAATCTAATCTAACCCAAAACCTC 57.424 34.615 0.00 0.00 0.00 3.85
315 316 0.740737 AGGCCGTGCATTAATTCAGC 59.259 50.000 0.00 0.00 0.00 4.26
316 317 3.814842 TCATAGGCCGTGCATTAATTCAG 59.185 43.478 0.00 0.00 0.00 3.02
329 330 6.039270 TCAAATCTTACCAAAATCATAGGCCG 59.961 38.462 0.00 0.00 0.00 6.13
373 377 4.451900 AGTTTTCACTCATTTCGGTCTGT 58.548 39.130 0.00 0.00 0.00 3.41
384 388 8.786826 TCAGTCTTTTCTTTAGTTTTCACTCA 57.213 30.769 0.00 0.00 34.06 3.41
396 400 8.966868 TGGTTCACTTATTTCAGTCTTTTCTTT 58.033 29.630 0.00 0.00 0.00 2.52
399 403 8.188139 TGTTGGTTCACTTATTTCAGTCTTTTC 58.812 33.333 0.00 0.00 0.00 2.29
413 419 8.232913 ACATGTTTTAGTATGTTGGTTCACTT 57.767 30.769 0.00 0.00 34.00 3.16
468 475 2.245546 TGGGACGGAGGGAGTATAAGAA 59.754 50.000 0.00 0.00 0.00 2.52
476 483 2.330216 AGAATATTGGGACGGAGGGAG 58.670 52.381 0.00 0.00 0.00 4.30
477 484 2.438021 CAAGAATATTGGGACGGAGGGA 59.562 50.000 0.00 0.00 0.00 4.20
478 485 2.172717 ACAAGAATATTGGGACGGAGGG 59.827 50.000 0.00 0.00 0.00 4.30
479 486 3.134804 AGACAAGAATATTGGGACGGAGG 59.865 47.826 0.00 0.00 0.00 4.30
480 487 4.408182 AGACAAGAATATTGGGACGGAG 57.592 45.455 0.00 0.00 0.00 4.63
481 488 4.837093 AAGACAAGAATATTGGGACGGA 57.163 40.909 0.00 0.00 0.00 4.69
482 489 5.914033 TCTAAGACAAGAATATTGGGACGG 58.086 41.667 0.00 0.00 0.00 4.79
483 490 8.338259 CAAATCTAAGACAAGAATATTGGGACG 58.662 37.037 0.00 0.00 0.00 4.79
484 491 9.178758 ACAAATCTAAGACAAGAATATTGGGAC 57.821 33.333 0.00 0.00 0.00 4.46
485 492 9.753674 AACAAATCTAAGACAAGAATATTGGGA 57.246 29.630 0.00 0.00 0.00 4.37
494 501 8.717821 CCGTATTTGAACAAATCTAAGACAAGA 58.282 33.333 14.68 0.00 40.99 3.02
495 502 8.717821 TCCGTATTTGAACAAATCTAAGACAAG 58.282 33.333 14.68 4.35 40.99 3.16
496 503 8.610248 TCCGTATTTGAACAAATCTAAGACAA 57.390 30.769 14.68 0.00 40.99 3.18
497 504 8.664798 CATCCGTATTTGAACAAATCTAAGACA 58.335 33.333 14.68 0.00 40.99 3.41
498 505 8.665685 ACATCCGTATTTGAACAAATCTAAGAC 58.334 33.333 14.68 7.71 40.99 3.01
499 506 8.786826 ACATCCGTATTTGAACAAATCTAAGA 57.213 30.769 14.68 9.29 40.99 2.10
503 510 8.964476 AGATACATCCGTATTTGAACAAATCT 57.036 30.769 14.68 2.50 40.99 2.40
505 512 9.832445 ACTAGATACATCCGTATTTGAACAAAT 57.168 29.630 15.41 15.41 42.95 2.32
506 513 9.661563 AACTAGATACATCCGTATTTGAACAAA 57.338 29.630 0.00 2.48 38.48 2.83
508 515 9.740239 GTAACTAGATACATCCGTATTTGAACA 57.260 33.333 5.35 0.00 38.48 3.18
509 516 8.899776 CGTAACTAGATACATCCGTATTTGAAC 58.100 37.037 10.40 0.00 38.48 3.18
510 517 8.623903 ACGTAACTAGATACATCCGTATTTGAA 58.376 33.333 10.40 0.00 38.48 2.69
511 518 8.158169 ACGTAACTAGATACATCCGTATTTGA 57.842 34.615 10.40 0.00 38.48 2.69
512 519 8.792831 AACGTAACTAGATACATCCGTATTTG 57.207 34.615 10.40 0.00 38.48 2.32
513 520 9.807649 AAAACGTAACTAGATACATCCGTATTT 57.192 29.630 10.40 4.25 38.48 1.40
516 523 9.109393 ACTAAAACGTAACTAGATACATCCGTA 57.891 33.333 10.40 0.00 0.00 4.02
517 524 7.912250 CACTAAAACGTAACTAGATACATCCGT 59.088 37.037 10.40 0.16 0.00 4.69
518 525 7.912250 ACACTAAAACGTAACTAGATACATCCG 59.088 37.037 10.40 0.00 0.00 4.18
519 526 9.578439 AACACTAAAACGTAACTAGATACATCC 57.422 33.333 10.40 0.00 0.00 3.51
529 536 9.578439 GGATGTATCTAACACTAAAACGTAACT 57.422 33.333 0.00 0.00 42.09 2.24
530 537 8.526681 CGGATGTATCTAACACTAAAACGTAAC 58.473 37.037 0.00 0.00 42.09 2.50
531 538 8.243426 ACGGATGTATCTAACACTAAAACGTAA 58.757 33.333 0.00 0.00 42.09 3.18
532 539 7.761409 ACGGATGTATCTAACACTAAAACGTA 58.239 34.615 0.00 0.00 42.09 3.57
533 540 6.624423 ACGGATGTATCTAACACTAAAACGT 58.376 36.000 0.00 0.00 42.09 3.99
534 541 8.792831 ATACGGATGTATCTAACACTAAAACG 57.207 34.615 0.00 0.00 42.09 3.60
563 570 9.581289 TCCCAAAATTCTTGTCTTAGATTTGTA 57.419 29.630 0.00 0.00 28.79 2.41
564 571 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
565 572 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
566 573 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
567 574 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
568 575 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
569 576 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
570 577 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
571 578 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
572 579 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
573 580 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
574 581 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
575 582 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
576 583 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
577 584 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
578 585 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
579 586 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
580 587 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
581 588 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
582 589 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
583 590 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
584 591 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
585 592 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
586 593 5.482878 TGAATATAAATACTCCCTCCGTCCC 59.517 44.000 0.00 0.00 0.00 4.46
587 594 6.210984 AGTGAATATAAATACTCCCTCCGTCC 59.789 42.308 0.00 0.00 0.00 4.79
588 595 7.229581 AGTGAATATAAATACTCCCTCCGTC 57.770 40.000 0.00 0.00 0.00 4.79
589 596 8.896722 ATAGTGAATATAAATACTCCCTCCGT 57.103 34.615 0.00 0.00 0.00 4.69
624 631 3.370103 CCGCTAAAATGTTACTCCCTCCA 60.370 47.826 0.00 0.00 0.00 3.86
625 632 3.203716 CCGCTAAAATGTTACTCCCTCC 58.796 50.000 0.00 0.00 0.00 4.30
648 655 3.627577 CGTAGCAAACCTAGCCATCATTT 59.372 43.478 0.00 0.00 0.00 2.32
670 677 3.753272 TCTTTAATGACTTGCACTCCTGC 59.247 43.478 0.00 0.00 44.52 4.85
671 678 5.240891 TCTCTTTAATGACTTGCACTCCTG 58.759 41.667 0.00 0.00 0.00 3.86
672 679 5.247110 TCTCTCTTTAATGACTTGCACTCCT 59.753 40.000 0.00 0.00 0.00 3.69
676 683 7.865707 TCTTTTCTCTCTTTAATGACTTGCAC 58.134 34.615 0.00 0.00 0.00 4.57
695 702 3.093057 AGGCTGAAATCCCCTCTTTTC 57.907 47.619 0.00 0.00 33.44 2.29
705 717 8.677300 TCATCACAGTTTATTTAGGCTGAAATC 58.323 33.333 0.00 0.00 31.51 2.17
707 719 7.994425 TCATCACAGTTTATTTAGGCTGAAA 57.006 32.000 0.00 0.00 33.57 2.69
709 721 7.067372 CCATTCATCACAGTTTATTTAGGCTGA 59.933 37.037 0.00 0.00 33.57 4.26
736 748 2.747989 CCTTCCCCTTTTACTCTTTCGC 59.252 50.000 0.00 0.00 0.00 4.70
842 870 2.938956 AACAACCCTCTCCTGTTCTG 57.061 50.000 0.00 0.00 0.00 3.02
924 969 3.918328 TTGGGGGACGGAGGAGGAC 62.918 68.421 0.00 0.00 0.00 3.85
925 970 2.486410 AATTGGGGGACGGAGGAGGA 62.486 60.000 0.00 0.00 0.00 3.71
926 971 1.571773 AAATTGGGGGACGGAGGAGG 61.572 60.000 0.00 0.00 0.00 4.30
927 972 0.107165 GAAATTGGGGGACGGAGGAG 60.107 60.000 0.00 0.00 0.00 3.69
1098 1383 1.939082 CGGAGGAGGAGGAGGAGGAA 61.939 65.000 0.00 0.00 0.00 3.36
1727 2069 0.463654 GACATTATGCGGCAGGGTGA 60.464 55.000 9.25 0.00 0.00 4.02
1732 2074 3.467043 GCATGACATTATGCGGCAG 57.533 52.632 9.25 0.00 43.36 4.85
1739 2081 2.868583 GCTGTGACGAGCATGACATTAT 59.131 45.455 0.00 0.00 38.95 1.28
1953 2295 3.054875 TGGTCTCTGATCCAAGTCCATTG 60.055 47.826 6.39 0.00 38.74 2.82
2028 2376 2.283966 AGGAGTACCTGCTGGCGT 60.284 61.111 9.95 0.00 45.92 5.68
2219 2572 6.064717 ACCCAGATAGGTTGATTTTCTATGC 58.935 40.000 0.00 0.00 36.44 3.14
2301 2654 0.537143 GGTTGTGTGCCACATCCTCA 60.537 55.000 19.85 0.00 45.51 3.86
2547 2903 0.823460 CACTGGGTTTTGCCTGTGTT 59.177 50.000 0.00 0.00 37.12 3.32
2781 3137 3.359695 AGTGCCGTACCAAATTACCAT 57.640 42.857 0.00 0.00 0.00 3.55
2812 3168 7.067981 AGCTTATCCAATTCAGATTTCCAAGTC 59.932 37.037 0.00 0.00 0.00 3.01
2954 3349 4.734398 TTCAAGGAAAAACATGCACTGT 57.266 36.364 0.00 0.00 40.84 3.55
2969 3364 7.517417 GCATTCATACGTATGAGACTTTCAAGG 60.517 40.741 30.96 19.55 42.99 3.61
3042 3443 8.038944 TCTTTTGTTAGCTTATACTACTGGGTG 58.961 37.037 0.00 0.00 0.00 4.61
3326 3731 4.948004 CACAGGGAGTATATCGGTAGCATA 59.052 45.833 0.00 0.00 0.00 3.14
3338 3743 8.557450 ACAAATATTTAGGAACACAGGGAGTAT 58.443 33.333 0.00 0.00 0.00 2.12
3339 3744 7.924541 ACAAATATTTAGGAACACAGGGAGTA 58.075 34.615 0.00 0.00 0.00 2.59
3341 3746 7.112779 AGACAAATATTTAGGAACACAGGGAG 58.887 38.462 0.00 0.00 0.00 4.30
3342 3747 7.027874 AGACAAATATTTAGGAACACAGGGA 57.972 36.000 0.00 0.00 0.00 4.20
3343 3748 7.703058 AAGACAAATATTTAGGAACACAGGG 57.297 36.000 0.00 0.00 0.00 4.45
3361 3766 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3362 3767 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
3368 3773 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
3369 3774 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
3370 3775 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3372 3777 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
3373 3778 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
3374 3779 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
3375 3780 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
3376 3781 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
3377 3782 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3379 3784 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3380 3785 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3381 3786 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3382 3787 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3384 3789 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
3385 3790 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
3387 3792 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
3408 3813 9.601217 AGTGAATCTACGCTTTAAAATATGTCT 57.399 29.630 0.00 0.00 0.00 3.41
3409 3814 9.851043 GAGTGAATCTACGCTTTAAAATATGTC 57.149 33.333 0.00 0.00 0.00 3.06
3410 3815 9.378551 TGAGTGAATCTACGCTTTAAAATATGT 57.621 29.630 0.00 0.00 0.00 2.29
3414 3819 8.730680 ACAATGAGTGAATCTACGCTTTAAAAT 58.269 29.630 0.00 0.00 0.00 1.82
3415 3820 8.094798 ACAATGAGTGAATCTACGCTTTAAAA 57.905 30.769 0.00 0.00 0.00 1.52
3416 3821 7.667043 ACAATGAGTGAATCTACGCTTTAAA 57.333 32.000 0.00 0.00 0.00 1.52
3432 3837 3.447586 ACTACATACGGAGCACAATGAGT 59.552 43.478 0.00 0.00 0.00 3.41
3433 3838 4.045104 GACTACATACGGAGCACAATGAG 58.955 47.826 0.00 0.00 0.00 2.90
3434 3839 3.445805 TGACTACATACGGAGCACAATGA 59.554 43.478 0.00 0.00 0.00 2.57
3435 3840 3.551890 GTGACTACATACGGAGCACAATG 59.448 47.826 0.00 0.00 0.00 2.82
3436 3841 3.447586 AGTGACTACATACGGAGCACAAT 59.552 43.478 0.00 0.00 0.00 2.71
3437 3842 2.823747 AGTGACTACATACGGAGCACAA 59.176 45.455 0.00 0.00 0.00 3.33
3438 3843 2.443416 AGTGACTACATACGGAGCACA 58.557 47.619 0.00 0.00 0.00 4.57
3439 3844 3.179830 CAAGTGACTACATACGGAGCAC 58.820 50.000 0.00 0.00 0.00 4.40
3440 3845 2.416836 GCAAGTGACTACATACGGAGCA 60.417 50.000 0.00 0.00 0.00 4.26
3441 3846 2.159226 AGCAAGTGACTACATACGGAGC 60.159 50.000 0.00 0.00 0.00 4.70
3442 3847 3.784701 AGCAAGTGACTACATACGGAG 57.215 47.619 0.00 0.00 0.00 4.63
3443 3848 5.648178 TTTAGCAAGTGACTACATACGGA 57.352 39.130 0.00 0.00 0.00 4.69
3444 3849 6.757010 AGATTTTAGCAAGTGACTACATACGG 59.243 38.462 0.00 0.00 0.00 4.02
3445 3850 7.702772 AGAGATTTTAGCAAGTGACTACATACG 59.297 37.037 0.00 0.00 0.00 3.06
3446 3851 8.934507 AGAGATTTTAGCAAGTGACTACATAC 57.065 34.615 0.00 0.00 0.00 2.39
3448 3853 8.972127 TCTAGAGATTTTAGCAAGTGACTACAT 58.028 33.333 0.00 0.00 0.00 2.29
3449 3854 8.349568 TCTAGAGATTTTAGCAAGTGACTACA 57.650 34.615 0.00 0.00 0.00 2.74
3450 3855 9.640963 TTTCTAGAGATTTTAGCAAGTGACTAC 57.359 33.333 0.00 0.00 0.00 2.73
3451 3856 9.862371 CTTTCTAGAGATTTTAGCAAGTGACTA 57.138 33.333 0.00 0.00 0.00 2.59
3452 3857 8.589338 TCTTTCTAGAGATTTTAGCAAGTGACT 58.411 33.333 0.00 0.00 0.00 3.41
3453 3858 8.652463 GTCTTTCTAGAGATTTTAGCAAGTGAC 58.348 37.037 0.00 0.00 0.00 3.67
3454 3859 8.367911 TGTCTTTCTAGAGATTTTAGCAAGTGA 58.632 33.333 0.00 0.00 0.00 3.41
3455 3860 8.539770 TGTCTTTCTAGAGATTTTAGCAAGTG 57.460 34.615 0.00 0.00 0.00 3.16
3456 3861 9.561069 TTTGTCTTTCTAGAGATTTTAGCAAGT 57.439 29.630 0.00 0.00 0.00 3.16
3472 3877 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
3473 3878 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
3474 3879 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
3475 3880 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
3476 3881 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
3477 3882 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
3478 3883 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
3479 3884 7.391833 GCTACTCCCTCCATTCCTAAATATTTG 59.608 40.741 11.05 1.40 0.00 2.32
3480 3885 7.073725 TGCTACTCCCTCCATTCCTAAATATTT 59.926 37.037 5.89 5.89 0.00 1.40
3481 3886 6.562608 TGCTACTCCCTCCATTCCTAAATATT 59.437 38.462 0.00 0.00 0.00 1.28
3482 3887 6.091555 TGCTACTCCCTCCATTCCTAAATAT 58.908 40.000 0.00 0.00 0.00 1.28
3483 3888 5.473273 TGCTACTCCCTCCATTCCTAAATA 58.527 41.667 0.00 0.00 0.00 1.40
3484 3889 4.307259 TGCTACTCCCTCCATTCCTAAAT 58.693 43.478 0.00 0.00 0.00 1.40
3485 3890 3.731431 TGCTACTCCCTCCATTCCTAAA 58.269 45.455 0.00 0.00 0.00 1.85
3486 3891 3.414759 TGCTACTCCCTCCATTCCTAA 57.585 47.619 0.00 0.00 0.00 2.69
3487 3892 3.637821 ATGCTACTCCCTCCATTCCTA 57.362 47.619 0.00 0.00 0.00 2.94
3488 3893 2.503869 ATGCTACTCCCTCCATTCCT 57.496 50.000 0.00 0.00 0.00 3.36
3489 3894 2.972713 TGTATGCTACTCCCTCCATTCC 59.027 50.000 0.00 0.00 0.00 3.01
3490 3895 4.689612 TTGTATGCTACTCCCTCCATTC 57.310 45.455 0.00 0.00 0.00 2.67
3491 3896 5.193679 GTTTTGTATGCTACTCCCTCCATT 58.806 41.667 0.00 0.00 0.00 3.16
3493 3898 3.585289 TGTTTTGTATGCTACTCCCTCCA 59.415 43.478 0.00 0.00 0.00 3.86
3498 3903 5.858581 CAGCTTTTGTTTTGTATGCTACTCC 59.141 40.000 0.00 0.00 0.00 3.85
3499 3904 5.858581 CCAGCTTTTGTTTTGTATGCTACTC 59.141 40.000 0.00 0.00 0.00 2.59
3501 3906 4.923281 CCCAGCTTTTGTTTTGTATGCTAC 59.077 41.667 0.00 0.00 0.00 3.58
3515 3920 5.358160 GCAAGACTACAATATCCCAGCTTTT 59.642 40.000 0.00 0.00 0.00 2.27
3570 4079 4.873010 AGTGAGACATCTCCTTAGGCTTA 58.127 43.478 6.44 0.00 42.20 3.09
3571 4080 3.718723 AGTGAGACATCTCCTTAGGCTT 58.281 45.455 6.44 0.00 42.20 4.35
3702 4229 3.870559 CCTACACCCTCACCCCTATATT 58.129 50.000 0.00 0.00 0.00 1.28
3854 4610 5.849858 TCACGTTTTAAACATGCGTAGATC 58.150 37.500 8.61 0.00 34.27 2.75
3859 5840 4.742438 ATCTCACGTTTTAAACATGCGT 57.258 36.364 8.61 0.00 36.13 5.24
4079 6062 5.958380 ACTTGGGACAGATCTGTACTTATCA 59.042 40.000 32.17 20.96 45.05 2.15
4287 6766 7.542130 CCTTTCTGAAAATAAATGTGCCACTAC 59.458 37.037 4.18 0.00 0.00 2.73
4349 6968 6.294473 CAGCATTAACTCCTTGATCACCTAT 58.706 40.000 0.00 0.00 0.00 2.57
4468 7096 5.153950 AGGGTCAAGACAGCTAAAACTAG 57.846 43.478 2.29 0.00 0.00 2.57
4580 7209 7.147724 ACCTCATATCGGTAGAAACAAATCTCA 60.148 37.037 0.00 0.00 31.69 3.27
4588 7218 6.394025 AAGAGACCTCATATCGGTAGAAAC 57.606 41.667 0.00 0.00 34.19 2.78
4762 7428 6.503524 TCCACTGTTTGTTTTTGCTCTAATC 58.496 36.000 0.00 0.00 0.00 1.75
4868 7534 0.250234 TTGTCCATCAAGCCTCCTCG 59.750 55.000 0.00 0.00 0.00 4.63
4882 7548 5.147162 CGACAAAACTATTTCAGCTTGTCC 58.853 41.667 7.06 0.00 42.29 4.02
4905 7571 0.110295 AAAATTGCCCCAACAAGCCC 59.890 50.000 0.00 0.00 31.96 5.19
5516 8187 4.319177 AGCTAATATGTCGCCAAATCCTC 58.681 43.478 0.00 0.00 0.00 3.71
5827 8676 6.550938 AGTGAGAGATGGTATGAATCACAA 57.449 37.500 5.36 0.00 38.38 3.33
5859 8708 8.737168 TCAATGTTTCCTCCTAAATCTACATG 57.263 34.615 0.00 0.00 0.00 3.21
6075 8930 8.900781 ACTAGGACCAAAAGAAGAACTAAAAAC 58.099 33.333 0.00 0.00 0.00 2.43
6391 9329 7.450124 TTGCCATTAAATTTGCACAATTCAT 57.550 28.000 0.00 2.35 32.63 2.57
6418 9356 2.092753 AGATAGGGACAATGTGCTGGTG 60.093 50.000 4.63 0.00 0.00 4.17
6419 9357 2.092753 CAGATAGGGACAATGTGCTGGT 60.093 50.000 4.63 0.00 0.00 4.00
6565 9504 3.094062 GCATGCTCTCCACGGCCTA 62.094 63.158 11.37 0.00 0.00 3.93
6748 9691 1.146263 CCTTGAGGGACGGGTATGC 59.854 63.158 0.00 0.00 37.23 3.14
6849 9792 1.144298 GTACCACTTTGGGTTCCCACT 59.856 52.381 10.41 0.00 43.37 4.00
6850 9793 1.133730 TGTACCACTTTGGGTTCCCAC 60.134 52.381 10.41 0.00 43.37 4.61
6851 9794 1.223501 TGTACCACTTTGGGTTCCCA 58.776 50.000 6.46 6.46 43.37 4.37
6852 9795 2.597578 ATGTACCACTTTGGGTTCCC 57.402 50.000 0.12 0.12 43.37 3.97
6853 9796 4.100344 ACAAAATGTACCACTTTGGGTTCC 59.900 41.667 13.04 0.00 43.37 3.62
6854 9797 5.270893 ACAAAATGTACCACTTTGGGTTC 57.729 39.130 13.04 0.00 43.37 3.62
6878 9821 4.139786 AGGGTTGTCGCTAACTCGATATA 58.860 43.478 0.00 0.00 40.84 0.86
7062 10170 2.030893 CAGCAGCAAAAAGGAATCGACA 60.031 45.455 0.00 0.00 0.00 4.35
7077 10185 5.113502 AGAAACAGAACATTAACAGCAGC 57.886 39.130 0.00 0.00 0.00 5.25
7080 10188 5.241728 AGGGAAGAAACAGAACATTAACAGC 59.758 40.000 0.00 0.00 0.00 4.40
7081 10189 6.486657 TCAGGGAAGAAACAGAACATTAACAG 59.513 38.462 0.00 0.00 0.00 3.16
7104 10212 1.198094 TCGATCCAAACAGGGCCTCA 61.198 55.000 0.95 0.00 38.24 3.86
7105 10213 0.462759 CTCGATCCAAACAGGGCCTC 60.463 60.000 0.95 0.00 38.24 4.70
7126 10234 1.234821 GGGATCACACGAAGTTTGCA 58.765 50.000 0.00 0.00 41.61 4.08
7145 10253 1.201181 TGGATTTTCCAATGAACGCCG 59.799 47.619 0.00 0.00 45.00 6.46
7225 10333 2.575735 TCTGCTGTTGGGATGATTGGTA 59.424 45.455 0.00 0.00 0.00 3.25
7227 10335 2.133281 TCTGCTGTTGGGATGATTGG 57.867 50.000 0.00 0.00 0.00 3.16
7228 10336 2.361119 CCATCTGCTGTTGGGATGATTG 59.639 50.000 11.80 0.00 39.12 2.67
7229 10337 2.024655 ACCATCTGCTGTTGGGATGATT 60.025 45.455 20.84 0.76 39.12 2.57
7230 10338 1.567649 ACCATCTGCTGTTGGGATGAT 59.432 47.619 20.84 1.37 39.12 2.45
7327 10435 1.295357 CGCACATCTGCAACCGGTTA 61.295 55.000 21.79 4.41 44.50 2.85
7357 10465 2.762535 ATAACCAGACTCCACCAACG 57.237 50.000 0.00 0.00 0.00 4.10
7362 10470 6.206498 GTCAACAAAAATAACCAGACTCCAC 58.794 40.000 0.00 0.00 0.00 4.02
7392 10807 4.981794 AGTTTCGACCAGTTTCACAAAAG 58.018 39.130 0.00 0.00 0.00 2.27
7402 10817 0.180406 ACCAGCAAGTTTCGACCAGT 59.820 50.000 0.00 0.00 0.00 4.00
7455 10870 1.339610 CAATGTTTCAAACCCCGAGCA 59.660 47.619 0.00 0.00 0.00 4.26
7464 10879 3.482436 ACTCTACCGCCAATGTTTCAAA 58.518 40.909 0.00 0.00 0.00 2.69
7484 10899 1.669265 GCCAACTTCAGGCGGTAATAC 59.331 52.381 0.00 0.00 43.15 1.89
7512 11354 2.099141 TTTCTCGGTGCTGGAAGATG 57.901 50.000 0.00 0.00 34.07 2.90
7518 11360 2.409870 GGCCATTTCTCGGTGCTGG 61.410 63.158 0.00 0.00 0.00 4.85
7562 11404 4.693566 TGACGTCTTCCATGTTTATTCACC 59.306 41.667 17.92 0.00 0.00 4.02
7603 11445 2.413453 ACGTACTAGTTTCTCGACCGAC 59.587 50.000 0.00 0.00 0.00 4.79
7604 11446 2.688507 ACGTACTAGTTTCTCGACCGA 58.311 47.619 0.00 0.00 0.00 4.69
7605 11447 3.614616 AGTACGTACTAGTTTCTCGACCG 59.385 47.826 26.36 0.00 34.13 4.79
7632 11481 2.102084 TGATTCTGAATCAGCCGAGGAG 59.898 50.000 25.05 0.00 42.69 3.69
7680 11529 1.908483 GAGCAAGGTAGGTCAGGGG 59.092 63.158 0.00 0.00 36.11 4.79
7705 11555 4.285807 GCATACGTATTTGTCATGCCAA 57.714 40.909 5.03 0.00 36.78 4.52
7706 11556 3.961477 GCATACGTATTTGTCATGCCA 57.039 42.857 5.03 0.00 36.78 4.92
7758 11611 6.016693 TCAGATCGTTTTGCAAAATTCCAGTA 60.017 34.615 26.24 9.12 0.00 2.74
7763 11616 6.509317 TGTTCAGATCGTTTTGCAAAATTC 57.491 33.333 26.24 21.17 0.00 2.17
7770 11623 7.360438 GGAGGATATATGTTCAGATCGTTTTGC 60.360 40.741 0.00 0.00 0.00 3.68
7773 11626 6.208797 TCGGAGGATATATGTTCAGATCGTTT 59.791 38.462 0.00 0.00 0.00 3.60
7774 11627 5.710567 TCGGAGGATATATGTTCAGATCGTT 59.289 40.000 0.00 0.00 0.00 3.85
7775 11628 5.254115 TCGGAGGATATATGTTCAGATCGT 58.746 41.667 0.00 0.00 0.00 3.73
7776 11629 5.819825 TCGGAGGATATATGTTCAGATCG 57.180 43.478 0.00 0.00 0.00 3.69
7777 11630 6.322456 TCCATCGGAGGATATATGTTCAGATC 59.678 42.308 0.00 0.00 31.23 2.75
7778 11631 6.197903 TCCATCGGAGGATATATGTTCAGAT 58.802 40.000 0.00 0.00 31.23 2.90
7779 11632 5.580022 TCCATCGGAGGATATATGTTCAGA 58.420 41.667 0.00 0.00 31.23 3.27
7780 11633 5.921962 TCCATCGGAGGATATATGTTCAG 57.078 43.478 0.00 0.00 31.23 3.02
7781 11634 5.395657 GCATCCATCGGAGGATATATGTTCA 60.396 44.000 8.87 0.00 46.54 3.18
7782 11635 5.053145 GCATCCATCGGAGGATATATGTTC 58.947 45.833 8.87 0.00 46.54 3.18
7783 11636 4.471025 TGCATCCATCGGAGGATATATGTT 59.529 41.667 8.87 0.00 46.54 2.71
7784 11637 4.033009 TGCATCCATCGGAGGATATATGT 58.967 43.478 8.87 0.00 46.54 2.29
7785 11638 4.375272 GTGCATCCATCGGAGGATATATG 58.625 47.826 8.87 1.31 46.54 1.78
7786 11639 3.068732 CGTGCATCCATCGGAGGATATAT 59.931 47.826 8.87 0.00 46.54 0.86
7787 11640 2.427095 CGTGCATCCATCGGAGGATATA 59.573 50.000 8.87 0.39 46.54 0.86
7788 11641 1.205655 CGTGCATCCATCGGAGGATAT 59.794 52.381 8.87 0.00 46.54 1.63
7789 11642 0.603065 CGTGCATCCATCGGAGGATA 59.397 55.000 8.87 0.00 46.54 2.59
7791 11644 2.814604 CGTGCATCCATCGGAGGA 59.185 61.111 0.00 0.00 43.01 3.71
7792 11645 2.969238 GCGTGCATCCATCGGAGG 60.969 66.667 0.00 0.00 36.49 4.30
7793 11646 2.202919 TGCGTGCATCCATCGGAG 60.203 61.111 0.00 0.00 34.05 4.63
7794 11647 2.511373 GTGCGTGCATCCATCGGA 60.511 61.111 0.00 0.00 35.55 4.55
7795 11648 3.576356 GGTGCGTGCATCCATCGG 61.576 66.667 0.00 0.00 0.00 4.18
7796 11649 2.397754 TTGGTGCGTGCATCCATCG 61.398 57.895 14.08 0.00 31.12 3.84
7797 11650 1.137404 GTTGGTGCGTGCATCCATC 59.863 57.895 14.08 10.86 31.12 3.51
7798 11651 1.177895 TTGTTGGTGCGTGCATCCAT 61.178 50.000 14.08 0.00 31.12 3.41
7799 11652 1.387295 TTTGTTGGTGCGTGCATCCA 61.387 50.000 2.12 7.28 0.00 3.41
7800 11653 0.664166 CTTTGTTGGTGCGTGCATCC 60.664 55.000 2.12 4.76 0.00 3.51
7801 11654 1.277495 GCTTTGTTGGTGCGTGCATC 61.277 55.000 0.00 0.00 0.00 3.91
7802 11655 1.300080 GCTTTGTTGGTGCGTGCAT 60.300 52.632 0.00 0.00 0.00 3.96
7803 11656 1.098129 TAGCTTTGTTGGTGCGTGCA 61.098 50.000 0.00 0.00 0.00 4.57
7804 11657 0.660300 GTAGCTTTGTTGGTGCGTGC 60.660 55.000 0.00 0.00 0.00 5.34
7805 11658 0.384230 CGTAGCTTTGTTGGTGCGTG 60.384 55.000 0.00 0.00 38.38 5.34
7806 11659 1.503818 CCGTAGCTTTGTTGGTGCGT 61.504 55.000 0.00 0.00 40.74 5.24
7807 11660 1.206578 CCGTAGCTTTGTTGGTGCG 59.793 57.895 0.00 0.00 41.67 5.34
7808 11661 0.237498 GTCCGTAGCTTTGTTGGTGC 59.763 55.000 0.00 0.00 0.00 5.01
7809 11662 0.511221 CGTCCGTAGCTTTGTTGGTG 59.489 55.000 0.00 0.00 0.00 4.17
7810 11663 1.226030 GCGTCCGTAGCTTTGTTGGT 61.226 55.000 0.00 0.00 0.00 3.67
7811 11664 1.495951 GCGTCCGTAGCTTTGTTGG 59.504 57.895 0.00 0.00 0.00 3.77
7812 11665 1.495951 GGCGTCCGTAGCTTTGTTG 59.504 57.895 0.00 0.00 34.52 3.33
7813 11666 2.025418 CGGCGTCCGTAGCTTTGTT 61.025 57.895 9.69 0.00 42.73 2.83
7814 11667 2.431942 CGGCGTCCGTAGCTTTGT 60.432 61.111 9.69 0.00 42.73 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.