Multiple sequence alignment - TraesCS5B01G260700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G260700 chr5B 100.000 5360 0 0 1 5360 445172805 445178164 0.000000e+00 9899.0
1 TraesCS5B01G260700 chr5B 92.573 929 62 4 1968 2894 517548856 517547933 0.000000e+00 1327.0
2 TraesCS5B01G260700 chr5B 95.216 648 23 5 2883 3526 565895894 565895251 0.000000e+00 1018.0
3 TraesCS5B01G260700 chr5B 83.732 209 30 3 500 706 179240998 179241204 1.520000e-45 195.0
4 TraesCS5B01G260700 chr5B 92.000 75 5 1 1 74 420730279 420730353 2.640000e-18 104.0
5 TraesCS5B01G260700 chr2B 94.910 1395 61 8 1504 2894 739540000 739538612 0.000000e+00 2174.0
6 TraesCS5B01G260700 chr2B 94.468 1392 64 9 1504 2888 24192742 24194127 0.000000e+00 2132.0
7 TraesCS5B01G260700 chr2B 93.345 1172 66 7 1500 2666 682344161 682342997 0.000000e+00 1722.0
8 TraesCS5B01G260700 chr2B 92.521 936 56 11 3236 4168 682342941 682342017 0.000000e+00 1328.0
9 TraesCS5B01G260700 chr2B 97.092 619 16 2 3522 4139 564433085 564433702 0.000000e+00 1042.0
10 TraesCS5B01G260700 chr2B 95.679 648 25 3 3522 4168 421089486 421088841 0.000000e+00 1038.0
11 TraesCS5B01G260700 chr2B 94.453 649 30 4 2883 3526 300557507 300558154 0.000000e+00 994.0
12 TraesCS5B01G260700 chr2B 95.710 606 21 3 2925 3526 421090291 421089687 0.000000e+00 970.0
13 TraesCS5B01G260700 chr2B 95.710 606 20 4 2925 3526 421091386 421090783 0.000000e+00 970.0
14 TraesCS5B01G260700 chr2B 93.529 649 38 4 3522 4168 798312876 798312230 0.000000e+00 963.0
15 TraesCS5B01G260700 chr2B 92.284 648 44 3 3522 4168 300558409 300559051 0.000000e+00 915.0
16 TraesCS5B01G260700 chr2B 90.801 674 31 12 2883 3526 798313802 798313130 0.000000e+00 872.0
17 TraesCS5B01G260700 chr2B 92.373 590 44 1 4771 5360 522097703 522098291 0.000000e+00 839.0
18 TraesCS5B01G260700 chr4A 94.464 1391 65 9 1505 2888 651203151 651204536 0.000000e+00 2132.0
19 TraesCS5B01G260700 chr4A 94.467 1211 56 7 1691 2894 16342702 16341496 0.000000e+00 1855.0
20 TraesCS5B01G260700 chr4A 90.353 425 35 4 3105 3526 545847581 545847160 2.180000e-153 553.0
21 TraesCS5B01G260700 chr4A 93.233 133 9 0 1213 1345 601060002 601060134 4.240000e-46 196.0
22 TraesCS5B01G260700 chr2A 94.185 1393 72 7 1505 2894 49425975 49424589 0.000000e+00 2115.0
23 TraesCS5B01G260700 chr2A 87.160 405 34 13 2493 2894 105547070 105546681 1.370000e-120 444.0
24 TraesCS5B01G260700 chr2A 83.871 217 31 3 500 714 719467333 719467547 2.530000e-48 204.0
25 TraesCS5B01G260700 chr2A 83.256 215 32 3 500 712 43393822 43394034 1.520000e-45 195.0
26 TraesCS5B01G260700 chr2A 92.000 75 5 1 1 74 719466870 719466944 2.640000e-18 104.0
27 TraesCS5B01G260700 chr2A 88.000 75 9 0 4183 4257 706200534 706200460 7.390000e-14 89.8
28 TraesCS5B01G260700 chr5D 93.546 1441 58 13 1 1437 373762120 373763529 0.000000e+00 2113.0
29 TraesCS5B01G260700 chr5D 85.938 320 27 9 4169 4473 373763603 373763919 5.180000e-85 326.0
30 TraesCS5B01G260700 chr3B 92.521 1404 89 8 1501 2894 298272420 298271023 0.000000e+00 1997.0
31 TraesCS5B01G260700 chr3B 89.340 591 62 1 4770 5360 493646633 493646044 0.000000e+00 741.0
32 TraesCS5B01G260700 chr3B 88.612 281 28 3 2610 2888 776950547 776950825 6.650000e-89 339.0
33 TraesCS5B01G260700 chr3B 87.000 200 22 3 196 392 552491416 552491614 6.990000e-54 222.0
34 TraesCS5B01G260700 chr1A 94.402 1054 53 5 1506 2555 491373804 491372753 0.000000e+00 1615.0
35 TraesCS5B01G260700 chr1A 93.939 1056 50 9 1504 2555 552256537 552255492 0.000000e+00 1583.0
36 TraesCS5B01G260700 chr1A 91.994 662 21 10 2888 3522 97870179 97870835 0.000000e+00 900.0
37 TraesCS5B01G260700 chr1A 90.687 655 38 14 2888 3528 491372754 491372109 0.000000e+00 850.0
38 TraesCS5B01G260700 chr1A 90.780 141 9 3 972 1108 397769738 397769878 9.170000e-43 185.0
39 TraesCS5B01G260700 chr7A 93.094 1057 63 7 1505 2555 605840387 605839335 0.000000e+00 1539.0
40 TraesCS5B01G260700 chr7A 91.194 670 27 14 2888 3528 605839336 605838670 0.000000e+00 881.0
41 TraesCS5B01G260700 chr7A 82.254 417 68 6 4947 5360 733028346 733027933 6.600000e-94 355.0
42 TraesCS5B01G260700 chr7A 80.674 445 50 28 998 1432 677871397 677871815 4.030000e-81 313.0
43 TraesCS5B01G260700 chr7A 92.000 75 5 1 1 74 171431714 171431788 2.640000e-18 104.0
44 TraesCS5B01G260700 chr1B 97.063 647 17 2 3522 4167 669656632 669655987 0.000000e+00 1088.0
45 TraesCS5B01G260700 chr1B 95.756 589 20 3 2883 3467 669657375 669656788 0.000000e+00 944.0
46 TraesCS5B01G260700 chr1B 95.693 534 20 3 3638 4170 32779000 32779531 0.000000e+00 856.0
47 TraesCS5B01G260700 chr1B 90.832 589 54 0 4772 5360 529857092 529857680 0.000000e+00 789.0
48 TraesCS5B01G260700 chr1B 84.071 226 32 2 1212 1436 428801989 428802211 1.170000e-51 215.0
49 TraesCS5B01G260700 chr1B 97.321 112 3 0 997 1108 428801714 428801825 1.970000e-44 191.0
50 TraesCS5B01G260700 chr1B 90.000 70 7 0 4188 4257 428802292 428802361 2.060000e-14 91.6
51 TraesCS5B01G260700 chr7B 96.774 589 19 0 4772 5360 651786316 651786904 0.000000e+00 983.0
52 TraesCS5B01G260700 chr7B 96.167 600 19 4 2883 3480 481828473 481829070 0.000000e+00 977.0
53 TraesCS5B01G260700 chr7B 96.265 589 22 0 4772 5360 651630170 651630758 0.000000e+00 966.0
54 TraesCS5B01G260700 chr7B 84.434 212 29 3 500 709 68110965 68111174 7.040000e-49 206.0
55 TraesCS5B01G260700 chr7B 83.902 205 30 2 500 702 528913685 528913888 5.480000e-45 193.0
56 TraesCS5B01G260700 chr7B 92.000 75 5 1 1 74 68110502 68110576 2.640000e-18 104.0
57 TraesCS5B01G260700 chr6B 95.318 534 18 5 3638 4169 627543182 627542654 0.000000e+00 841.0
58 TraesCS5B01G260700 chr6B 95.131 534 19 5 3638 4169 627510855 627510327 0.000000e+00 835.0
59 TraesCS5B01G260700 chr6B 91.518 224 19 0 1214 1437 192738424 192738647 5.210000e-80 309.0
60 TraesCS5B01G260700 chr6B 93.827 81 5 0 4179 4259 192738717 192738797 7.290000e-24 122.0
61 TraesCS5B01G260700 chr6B 92.000 75 5 1 1 74 408675038 408675112 2.640000e-18 104.0
62 TraesCS5B01G260700 chr6B 91.026 78 6 1 1 77 704837599 704837522 2.640000e-18 104.0
63 TraesCS5B01G260700 chr6B 94.286 35 2 0 4319 4353 192738854 192738888 3.000000e-03 54.7
64 TraesCS5B01G260700 chr3A 90.155 386 32 5 2505 2888 651594070 651594451 1.040000e-136 497.0
65 TraesCS5B01G260700 chr6D 90.365 384 28 4 1 383 14069636 14070011 3.730000e-136 496.0
66 TraesCS5B01G260700 chr6D 92.664 259 19 0 438 696 14070377 14070635 1.820000e-99 374.0
67 TraesCS5B01G260700 chr6D 91.964 224 18 0 1214 1437 106049082 106049305 1.120000e-81 315.0
68 TraesCS5B01G260700 chr6D 84.151 265 30 6 851 1106 106048691 106048952 4.150000e-61 246.0
69 TraesCS5B01G260700 chr6D 93.827 81 5 0 4179 4259 106049375 106049455 7.290000e-24 122.0
70 TraesCS5B01G260700 chr6D 94.286 35 2 0 4319 4353 106049512 106049546 3.000000e-03 54.7
71 TraesCS5B01G260700 chr5A 87.915 422 36 6 2469 2888 44407700 44408108 2.900000e-132 483.0
72 TraesCS5B01G260700 chr5A 79.480 346 39 20 4175 4500 475614557 475614890 3.250000e-52 217.0
73 TraesCS5B01G260700 chr2D 82.136 515 45 20 196 708 617151934 617151465 1.080000e-106 398.0
74 TraesCS5B01G260700 chr2D 87.179 78 10 0 4179 4256 565590582 565590505 7.390000e-14 89.8
75 TraesCS5B01G260700 chr2D 87.838 74 9 0 4184 4257 565860993 565860920 2.660000e-13 87.9
76 TraesCS5B01G260700 chr2D 88.732 71 8 0 4183 4253 642783390 642783460 2.660000e-13 87.9
77 TraesCS5B01G260700 chr1D 81.574 521 50 23 196 708 485172565 485173047 6.510000e-104 388.0
78 TraesCS5B01G260700 chr1D 80.989 526 55 24 196 713 485171024 485171512 5.070000e-100 375.0
79 TraesCS5B01G260700 chr1D 83.799 358 40 8 1 355 485170788 485171130 1.860000e-84 324.0
80 TraesCS5B01G260700 chr1D 84.141 227 32 2 1211 1436 316678677 316678900 3.250000e-52 217.0
81 TraesCS5B01G260700 chr1D 95.726 117 5 0 992 1108 316678426 316678542 7.090000e-44 189.0
82 TraesCS5B01G260700 chr6A 91.667 228 18 1 1211 1437 129317231 129317458 1.120000e-81 315.0
83 TraesCS5B01G260700 chr6A 89.823 226 23 0 4775 5000 510884353 510884578 1.890000e-74 291.0
84 TraesCS5B01G260700 chr6A 83.895 267 32 8 851 1109 129316844 129317107 1.490000e-60 244.0
85 TraesCS5B01G260700 chr6A 93.827 81 5 0 4179 4259 129317532 129317612 7.290000e-24 122.0
86 TraesCS5B01G260700 chr4B 82.633 357 42 9 1 355 602259462 602259124 1.130000e-76 298.0
87 TraesCS5B01G260700 chr4B 78.278 511 72 26 196 705 602259227 602258755 5.250000e-75 292.0
88 TraesCS5B01G260700 chr4B 92.308 130 10 0 1216 1345 5466302 5466431 9.170000e-43 185.0
89 TraesCS5B01G260700 chr4B 91.549 71 6 0 1 71 194232186 194232256 1.230000e-16 99.0
90 TraesCS5B01G260700 chr7D 83.710 221 27 6 1215 1432 586765906 586766120 3.270000e-47 200.0
91 TraesCS5B01G260700 chr7D 97.248 109 3 0 998 1106 586765714 586765822 9.170000e-43 185.0
92 TraesCS5B01G260700 chr4D 90.840 131 12 0 1215 1345 373933615 373933485 5.520000e-40 176.0
93 TraesCS5B01G260700 chr4D 95.455 110 5 0 999 1108 373933836 373933727 5.520000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G260700 chr5B 445172805 445178164 5359 False 9899.000000 9899 100.000000 1 5360 1 chr5B.!!$F3 5359
1 TraesCS5B01G260700 chr5B 517547933 517548856 923 True 1327.000000 1327 92.573000 1968 2894 1 chr5B.!!$R1 926
2 TraesCS5B01G260700 chr5B 565895251 565895894 643 True 1018.000000 1018 95.216000 2883 3526 1 chr5B.!!$R2 643
3 TraesCS5B01G260700 chr2B 739538612 739540000 1388 True 2174.000000 2174 94.910000 1504 2894 1 chr2B.!!$R1 1390
4 TraesCS5B01G260700 chr2B 24192742 24194127 1385 False 2132.000000 2132 94.468000 1504 2888 1 chr2B.!!$F1 1384
5 TraesCS5B01G260700 chr2B 682342017 682344161 2144 True 1525.000000 1722 92.933000 1500 4168 2 chr2B.!!$R3 2668
6 TraesCS5B01G260700 chr2B 564433085 564433702 617 False 1042.000000 1042 97.092000 3522 4139 1 chr2B.!!$F3 617
7 TraesCS5B01G260700 chr2B 421088841 421091386 2545 True 992.666667 1038 95.699667 2925 4168 3 chr2B.!!$R2 1243
8 TraesCS5B01G260700 chr2B 300557507 300559051 1544 False 954.500000 994 93.368500 2883 4168 2 chr2B.!!$F4 1285
9 TraesCS5B01G260700 chr2B 798312230 798313802 1572 True 917.500000 963 92.165000 2883 4168 2 chr2B.!!$R4 1285
10 TraesCS5B01G260700 chr2B 522097703 522098291 588 False 839.000000 839 92.373000 4771 5360 1 chr2B.!!$F2 589
11 TraesCS5B01G260700 chr4A 651203151 651204536 1385 False 2132.000000 2132 94.464000 1505 2888 1 chr4A.!!$F2 1383
12 TraesCS5B01G260700 chr4A 16341496 16342702 1206 True 1855.000000 1855 94.467000 1691 2894 1 chr4A.!!$R1 1203
13 TraesCS5B01G260700 chr2A 49424589 49425975 1386 True 2115.000000 2115 94.185000 1505 2894 1 chr2A.!!$R1 1389
14 TraesCS5B01G260700 chr5D 373762120 373763919 1799 False 1219.500000 2113 89.742000 1 4473 2 chr5D.!!$F1 4472
15 TraesCS5B01G260700 chr3B 298271023 298272420 1397 True 1997.000000 1997 92.521000 1501 2894 1 chr3B.!!$R1 1393
16 TraesCS5B01G260700 chr3B 493646044 493646633 589 True 741.000000 741 89.340000 4770 5360 1 chr3B.!!$R2 590
17 TraesCS5B01G260700 chr1A 552255492 552256537 1045 True 1583.000000 1583 93.939000 1504 2555 1 chr1A.!!$R1 1051
18 TraesCS5B01G260700 chr1A 491372109 491373804 1695 True 1232.500000 1615 92.544500 1506 3528 2 chr1A.!!$R2 2022
19 TraesCS5B01G260700 chr1A 97870179 97870835 656 False 900.000000 900 91.994000 2888 3522 1 chr1A.!!$F1 634
20 TraesCS5B01G260700 chr7A 605838670 605840387 1717 True 1210.000000 1539 92.144000 1505 3528 2 chr7A.!!$R2 2023
21 TraesCS5B01G260700 chr1B 669655987 669657375 1388 True 1016.000000 1088 96.409500 2883 4167 2 chr1B.!!$R1 1284
22 TraesCS5B01G260700 chr1B 32779000 32779531 531 False 856.000000 856 95.693000 3638 4170 1 chr1B.!!$F1 532
23 TraesCS5B01G260700 chr1B 529857092 529857680 588 False 789.000000 789 90.832000 4772 5360 1 chr1B.!!$F2 588
24 TraesCS5B01G260700 chr7B 651786316 651786904 588 False 983.000000 983 96.774000 4772 5360 1 chr7B.!!$F4 588
25 TraesCS5B01G260700 chr7B 481828473 481829070 597 False 977.000000 977 96.167000 2883 3480 1 chr7B.!!$F1 597
26 TraesCS5B01G260700 chr7B 651630170 651630758 588 False 966.000000 966 96.265000 4772 5360 1 chr7B.!!$F3 588
27 TraesCS5B01G260700 chr6B 627542654 627543182 528 True 841.000000 841 95.318000 3638 4169 1 chr6B.!!$R2 531
28 TraesCS5B01G260700 chr6B 627510327 627510855 528 True 835.000000 835 95.131000 3638 4169 1 chr6B.!!$R1 531
29 TraesCS5B01G260700 chr6D 14069636 14070635 999 False 435.000000 496 91.514500 1 696 2 chr6D.!!$F1 695
30 TraesCS5B01G260700 chr1D 485170788 485173047 2259 False 362.333333 388 82.120667 1 713 3 chr1D.!!$F2 712
31 TraesCS5B01G260700 chr6A 129316844 129317612 768 False 227.000000 315 89.796333 851 4259 3 chr6A.!!$F2 3408
32 TraesCS5B01G260700 chr4B 602258755 602259462 707 True 295.000000 298 80.455500 1 705 2 chr4B.!!$R1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 526 0.036388 GGTGGGAGATTGCGACAAGA 60.036 55.000 0.00 0.00 0.00 3.02 F
1473 1963 0.107897 TCCCGTGTGACATGCATACC 60.108 55.000 0.00 0.00 35.41 2.73 F
1498 1988 0.462759 GGCTGCTACCATGGACTGAC 60.463 60.000 21.47 9.81 0.00 3.51 F
1500 1990 0.532573 CTGCTACCATGGACTGACGT 59.467 55.000 21.47 0.00 0.00 4.34 F
1501 1991 0.973632 TGCTACCATGGACTGACGTT 59.026 50.000 21.47 0.00 0.00 3.99 F
4170 6903 1.126846 CGGTAAAGAGACTTTGCGCTG 59.873 52.381 9.73 0.99 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 2190 0.036765 CATGCATGCAACCAGCCTTT 60.037 50.000 26.68 0.80 44.83 3.11 R
3310 5040 5.531634 TGTTTCAAATGAGTGAAATCTGGC 58.468 37.500 3.88 0.00 46.31 4.85 R
3529 5526 0.467844 CCATCCCGCAAATCCATGGA 60.468 55.000 18.88 18.88 36.84 3.41 R
4170 6903 0.111089 CTGCAACGAAGAGCAACGTC 60.111 55.000 0.00 0.00 41.87 4.34 R
4172 6905 1.205064 CCTGCAACGAAGAGCAACG 59.795 57.895 0.00 0.00 40.72 4.10 R
5204 7984 0.258774 AGGTGGTGCAGGTTTTGTCT 59.741 50.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.983930 GCGCGACTCTGACCTCTGT 61.984 63.158 12.10 0.00 0.00 3.41
31 32 1.857318 CGCGACTCTGACCTCTGTGT 61.857 60.000 0.00 0.00 0.00 3.72
40 41 0.320771 GACCTCTGTGTGAACGGCAT 60.321 55.000 0.00 0.00 0.00 4.40
111 112 2.177594 CTGCTGCTTCCCTTCCGACT 62.178 60.000 0.00 0.00 0.00 4.18
288 400 2.935481 CTGGCAACCTCCCCCTCA 60.935 66.667 0.00 0.00 0.00 3.86
344 456 1.946475 GCTCGCTACCTTCCCTTCGT 61.946 60.000 0.00 0.00 0.00 3.85
401 517 0.636647 GGATTTGGGGGTGGGAGATT 59.363 55.000 0.00 0.00 0.00 2.40
402 518 1.689258 GGATTTGGGGGTGGGAGATTG 60.689 57.143 0.00 0.00 0.00 2.67
403 519 0.325577 ATTTGGGGGTGGGAGATTGC 60.326 55.000 0.00 0.00 0.00 3.56
404 520 2.779742 TTTGGGGGTGGGAGATTGCG 62.780 60.000 0.00 0.00 0.00 4.85
405 521 3.407967 GGGGGTGGGAGATTGCGA 61.408 66.667 0.00 0.00 0.00 5.10
406 522 2.124695 GGGGTGGGAGATTGCGAC 60.125 66.667 0.00 0.00 0.00 5.19
407 523 2.668632 GGGTGGGAGATTGCGACA 59.331 61.111 0.00 0.00 0.00 4.35
408 524 1.002624 GGGTGGGAGATTGCGACAA 60.003 57.895 0.00 0.00 0.00 3.18
409 525 1.026718 GGGTGGGAGATTGCGACAAG 61.027 60.000 0.00 0.00 0.00 3.16
410 526 0.036388 GGTGGGAGATTGCGACAAGA 60.036 55.000 0.00 0.00 0.00 3.02
411 527 1.407437 GGTGGGAGATTGCGACAAGAT 60.407 52.381 0.00 0.00 0.00 2.40
412 528 2.359900 GTGGGAGATTGCGACAAGATT 58.640 47.619 0.00 0.00 0.00 2.40
413 529 2.749621 GTGGGAGATTGCGACAAGATTT 59.250 45.455 0.00 0.00 0.00 2.17
414 530 3.191371 GTGGGAGATTGCGACAAGATTTT 59.809 43.478 0.00 0.00 0.00 1.82
415 531 3.191162 TGGGAGATTGCGACAAGATTTTG 59.809 43.478 0.00 0.00 40.24 2.44
416 532 3.428045 GGGAGATTGCGACAAGATTTTGG 60.428 47.826 0.57 0.00 38.66 3.28
417 533 3.428045 GGAGATTGCGACAAGATTTTGGG 60.428 47.826 0.57 0.00 38.66 4.12
418 534 2.493278 AGATTGCGACAAGATTTTGGGG 59.507 45.455 0.57 0.00 38.66 4.96
419 535 1.698506 TTGCGACAAGATTTTGGGGT 58.301 45.000 0.57 0.00 38.66 4.95
420 536 0.958091 TGCGACAAGATTTTGGGGTG 59.042 50.000 0.57 0.00 38.66 4.61
421 537 0.243636 GCGACAAGATTTTGGGGTGG 59.756 55.000 0.57 0.00 38.66 4.61
422 538 0.887933 CGACAAGATTTTGGGGTGGG 59.112 55.000 0.57 0.00 38.66 4.61
423 539 1.546773 CGACAAGATTTTGGGGTGGGA 60.547 52.381 0.57 0.00 38.66 4.37
424 540 2.171003 GACAAGATTTTGGGGTGGGAG 58.829 52.381 0.57 0.00 38.66 4.30
425 541 1.786441 ACAAGATTTTGGGGTGGGAGA 59.214 47.619 0.57 0.00 38.66 3.71
426 542 2.383338 ACAAGATTTTGGGGTGGGAGAT 59.617 45.455 0.57 0.00 38.66 2.75
478 920 2.760374 CGAGGAGAGACTTGCAGTTTT 58.240 47.619 0.00 0.00 0.00 2.43
487 929 7.047460 AGAGACTTGCAGTTTTGAAATGAAT 57.953 32.000 0.00 0.00 0.00 2.57
568 1012 1.378762 CTCCCACCCAACGGACAAT 59.621 57.895 0.00 0.00 0.00 2.71
571 1015 1.074072 CCACCCAACGGACAATGGA 59.926 57.895 0.00 0.00 39.12 3.41
587 1031 2.954684 GGACCGACCAGATGGCACA 61.955 63.158 0.00 0.00 40.44 4.57
626 1070 1.690633 AGCGGGACACCTGATGGAT 60.691 57.895 0.36 0.00 37.04 3.41
639 1083 3.615937 CCTGATGGATGCGATTAAGATCG 59.384 47.826 4.55 4.55 45.93 3.69
702 1146 4.869861 CACAGCTGCACTTTTTAGGTTTTT 59.130 37.500 15.27 0.00 0.00 1.94
706 1150 4.682050 GCTGCACTTTTTAGGTTTTTGGGA 60.682 41.667 0.00 0.00 0.00 4.37
707 1151 5.422214 TGCACTTTTTAGGTTTTTGGGAA 57.578 34.783 0.00 0.00 0.00 3.97
708 1152 5.805728 TGCACTTTTTAGGTTTTTGGGAAA 58.194 33.333 0.00 0.00 0.00 3.13
709 1153 6.238648 TGCACTTTTTAGGTTTTTGGGAAAA 58.761 32.000 0.00 0.00 32.53 2.29
825 1269 1.126079 CGATACGCGCGGACTAATTT 58.874 50.000 35.22 9.53 0.00 1.82
899 1343 3.108376 CCTCCCCCTGGCTCTATATAAC 58.892 54.545 0.00 0.00 0.00 1.89
1109 1559 1.337823 CCAGGACAAGGAAGGTACGTG 60.338 57.143 0.00 0.00 0.00 4.49
1159 1631 0.742990 TCGCCGCCAATTTTCGATCT 60.743 50.000 0.00 0.00 0.00 2.75
1161 1633 0.732571 GCCGCCAATTTTCGATCTGA 59.267 50.000 0.00 0.00 0.00 3.27
1178 1650 5.809562 CGATCTGAGCTCATCTGTTAACTTT 59.190 40.000 18.63 0.00 0.00 2.66
1203 1675 4.691175 TCTTGATCTGCTCTACTTGATGC 58.309 43.478 0.00 0.00 0.00 3.91
1207 1679 3.683365 TCTGCTCTACTTGATGCACAA 57.317 42.857 0.00 0.00 36.97 3.33
1297 1771 2.380410 CGCTGGCCGACTACAACAC 61.380 63.158 0.00 0.00 40.02 3.32
1458 1942 0.810031 CACGCACCCTTAGATTCCCG 60.810 60.000 0.00 0.00 0.00 5.14
1460 1944 0.810031 CGCACCCTTAGATTCCCGTG 60.810 60.000 0.00 0.00 0.00 4.94
1471 1961 2.170397 AGATTCCCGTGTGACATGCATA 59.830 45.455 0.00 0.00 0.00 3.14
1473 1963 0.107897 TCCCGTGTGACATGCATACC 60.108 55.000 0.00 0.00 35.41 2.73
1475 1965 1.138069 CCCGTGTGACATGCATACCTA 59.862 52.381 0.00 0.00 35.41 3.08
1477 1967 2.201732 CGTGTGACATGCATACCTACC 58.798 52.381 0.00 0.00 35.41 3.18
1480 1970 2.170397 TGTGACATGCATACCTACCTGG 59.830 50.000 0.00 0.00 42.93 4.45
1488 1978 1.344763 CATACCTACCTGGCTGCTACC 59.655 57.143 0.00 0.00 40.22 3.18
1498 1988 0.462759 GGCTGCTACCATGGACTGAC 60.463 60.000 21.47 9.81 0.00 3.51
1499 1989 0.807667 GCTGCTACCATGGACTGACG 60.808 60.000 21.47 3.05 0.00 4.35
1500 1990 0.532573 CTGCTACCATGGACTGACGT 59.467 55.000 21.47 0.00 0.00 4.34
1501 1991 0.973632 TGCTACCATGGACTGACGTT 59.026 50.000 21.47 0.00 0.00 3.99
1502 1992 1.337728 TGCTACCATGGACTGACGTTG 60.338 52.381 21.47 0.00 0.00 4.10
1677 2173 5.757850 ATTGTCAGTTTTTGTCAGGAGAC 57.242 39.130 0.00 0.00 45.19 3.36
1694 2190 9.877178 GTCAGGAGACAGAGAAAATATTAAGAA 57.123 33.333 0.00 0.00 44.34 2.52
1700 2196 9.746457 AGACAGAGAAAATATTAAGAAAAGGCT 57.254 29.630 0.00 0.00 0.00 4.58
1745 2251 4.629122 TCTCTCTCTCCCCATCAAAAGAT 58.371 43.478 0.00 0.00 0.00 2.40
2009 2558 8.817100 CACTCATTTAAAATATACGAGCTCACA 58.183 33.333 15.40 0.00 0.00 3.58
2071 2623 9.071276 CATATTTCACCCATATCTTTAAGCTGT 57.929 33.333 0.00 0.00 0.00 4.40
2496 3118 8.710835 AACAAGGTTCACGTATTTTGAAAAAT 57.289 26.923 6.29 6.29 41.24 1.82
2559 3181 9.965824 GATTTGGAAAACTGATTCACTCTTTAA 57.034 29.630 0.00 0.00 0.00 1.52
2563 3185 9.581099 TGGAAAACTGATTCACTCTTTAAAAAC 57.419 29.630 0.00 0.00 0.00 2.43
2686 3308 6.596621 TCACGGGACAATGGATATATTTCAA 58.403 36.000 0.00 0.00 0.00 2.69
2687 3309 7.057264 TCACGGGACAATGGATATATTTCAAA 58.943 34.615 0.00 0.00 0.00 2.69
2688 3310 7.558081 TCACGGGACAATGGATATATTTCAAAA 59.442 33.333 0.00 0.00 0.00 2.44
2689 3311 8.194104 CACGGGACAATGGATATATTTCAAAAA 58.806 33.333 0.00 0.00 0.00 1.94
2901 3527 9.143631 CTTGTTTCAAGATCAATTTTGGATACC 57.856 33.333 3.73 0.00 0.00 2.73
3138 3767 6.729690 ATCCAATTTCACTCAGTTCCAAAA 57.270 33.333 0.00 0.00 0.00 2.44
3245 3876 6.638610 ACCAATTTGACATCTTTTCACACAA 58.361 32.000 0.00 0.00 0.00 3.33
3258 3889 7.577979 TCTTTTCACACAACGGAATAACATAC 58.422 34.615 0.00 0.00 0.00 2.39
3565 5562 3.428532 GATGGGAGATTTGGATGATGGG 58.571 50.000 0.00 0.00 0.00 4.00
4057 6789 9.613428 TTGACTATATACAAAACATTAGCTGCT 57.387 29.630 7.57 7.57 0.00 4.24
4170 6903 1.126846 CGGTAAAGAGACTTTGCGCTG 59.873 52.381 9.73 0.99 0.00 5.18
4171 6904 2.413837 GGTAAAGAGACTTTGCGCTGA 58.586 47.619 9.73 0.00 0.00 4.26
4172 6905 2.157863 GGTAAAGAGACTTTGCGCTGAC 59.842 50.000 9.73 0.00 0.00 3.51
4279 7016 1.264826 TCGTTTGTTTTTCGGCTAGCC 59.735 47.619 24.75 24.75 0.00 3.93
4283 7020 4.055360 GTTTGTTTTTCGGCTAGCCATTT 58.945 39.130 32.47 0.00 35.37 2.32
4312 7059 7.747155 TCCAACTTTATTTGACGGTTTGATA 57.253 32.000 0.00 0.00 0.00 2.15
4314 7061 8.455682 TCCAACTTTATTTGACGGTTTGATATC 58.544 33.333 0.00 0.00 0.00 1.63
4322 7069 6.567687 TTGACGGTTTGATATCATTTGTGT 57.432 33.333 6.17 2.27 0.00 3.72
4363 7110 4.320057 CCAAGAAGAAGTTCATGTGAGTGC 60.320 45.833 5.50 0.00 34.82 4.40
4366 7113 3.758755 AGAAGTTCATGTGAGTGCTCA 57.241 42.857 5.50 0.00 37.24 4.26
4370 7117 2.028658 AGTTCATGTGAGTGCTCATCGT 60.029 45.455 5.11 0.00 42.18 3.73
4377 7124 1.203928 GAGTGCTCATCGTCGGATTG 58.796 55.000 0.00 0.00 0.00 2.67
4381 7128 1.951130 CTCATCGTCGGATTGGGCG 60.951 63.158 0.00 0.00 0.00 6.13
4382 7129 2.202878 CATCGTCGGATTGGGCGT 60.203 61.111 0.00 0.00 0.00 5.68
4418 7165 2.872858 GGACCAGCTGAATAAATCGTCC 59.127 50.000 17.39 16.32 32.44 4.79
4431 7178 0.169230 ATCGTCCTAGCATCGATCGC 59.831 55.000 11.09 10.63 39.58 4.58
4441 7188 1.153901 ATCGATCGCGTCCGTGTTT 60.154 52.632 11.09 4.55 38.98 2.83
4450 7197 2.285718 CGCGTCCGTGTTTGAGTTTTTA 60.286 45.455 0.00 0.00 0.00 1.52
4455 7202 5.796437 CGTCCGTGTTTGAGTTTTTAAGTTT 59.204 36.000 0.00 0.00 0.00 2.66
4456 7203 6.237097 CGTCCGTGTTTGAGTTTTTAAGTTTG 60.237 38.462 0.00 0.00 0.00 2.93
4459 7206 7.866393 TCCGTGTTTGAGTTTTTAAGTTTGAAA 59.134 29.630 0.00 0.00 0.00 2.69
4460 7207 8.488764 CCGTGTTTGAGTTTTTAAGTTTGAAAA 58.511 29.630 0.00 0.00 0.00 2.29
4461 7208 9.511022 CGTGTTTGAGTTTTTAAGTTTGAAAAG 57.489 29.630 0.00 0.00 0.00 2.27
4468 7215 9.841880 GAGTTTTTAAGTTTGAAAAGTCAGTCT 57.158 29.630 17.69 3.81 41.70 3.24
4474 7221 7.923414 AAGTTTGAAAAGTCAGTCTAAGTGT 57.077 32.000 0.00 0.00 34.49 3.55
4475 7222 7.541122 AGTTTGAAAAGTCAGTCTAAGTGTC 57.459 36.000 0.00 0.00 34.49 3.67
4476 7223 7.331791 AGTTTGAAAAGTCAGTCTAAGTGTCT 58.668 34.615 0.00 0.00 34.49 3.41
4477 7224 8.475639 AGTTTGAAAAGTCAGTCTAAGTGTCTA 58.524 33.333 0.00 0.00 34.49 2.59
4478 7225 8.756864 GTTTGAAAAGTCAGTCTAAGTGTCTAG 58.243 37.037 0.00 0.00 34.49 2.43
4479 7226 7.584122 TGAAAAGTCAGTCTAAGTGTCTAGT 57.416 36.000 0.00 0.00 0.00 2.57
4480 7227 7.649973 TGAAAAGTCAGTCTAAGTGTCTAGTC 58.350 38.462 0.00 0.00 0.00 2.59
4481 7228 7.284716 TGAAAAGTCAGTCTAAGTGTCTAGTCA 59.715 37.037 0.00 0.00 0.00 3.41
4482 7229 6.811253 AAGTCAGTCTAAGTGTCTAGTCAG 57.189 41.667 0.00 0.00 0.00 3.51
4483 7230 5.871834 AGTCAGTCTAAGTGTCTAGTCAGT 58.128 41.667 0.00 0.00 0.00 3.41
4484 7231 6.300703 AGTCAGTCTAAGTGTCTAGTCAGTT 58.699 40.000 13.44 13.44 35.51 3.16
4485 7232 6.428771 AGTCAGTCTAAGTGTCTAGTCAGTTC 59.571 42.308 12.48 1.13 33.69 3.01
4486 7233 5.408909 TCAGTCTAAGTGTCTAGTCAGTTCG 59.591 44.000 12.48 7.77 33.69 3.95
4487 7234 5.179742 CAGTCTAAGTGTCTAGTCAGTTCGT 59.820 44.000 12.48 0.00 33.69 3.85
4488 7235 5.179742 AGTCTAAGTGTCTAGTCAGTTCGTG 59.820 44.000 12.48 6.20 33.69 4.35
4489 7236 5.049543 GTCTAAGTGTCTAGTCAGTTCGTGT 60.050 44.000 12.48 0.00 33.69 4.49
4490 7237 6.146837 GTCTAAGTGTCTAGTCAGTTCGTGTA 59.853 42.308 12.48 0.00 33.69 2.90
4491 7238 5.762825 AAGTGTCTAGTCAGTTCGTGTAA 57.237 39.130 4.45 0.00 0.00 2.41
4492 7239 5.359716 AGTGTCTAGTCAGTTCGTGTAAG 57.640 43.478 0.00 0.00 0.00 2.34
4493 7240 3.913163 GTGTCTAGTCAGTTCGTGTAAGC 59.087 47.826 0.00 0.00 0.00 3.09
4494 7241 3.566742 TGTCTAGTCAGTTCGTGTAAGCA 59.433 43.478 0.00 0.00 0.00 3.91
4495 7242 4.217767 TGTCTAGTCAGTTCGTGTAAGCAT 59.782 41.667 0.00 0.00 0.00 3.79
4496 7243 4.559251 GTCTAGTCAGTTCGTGTAAGCATG 59.441 45.833 0.00 0.00 0.00 4.06
4497 7244 2.688507 AGTCAGTTCGTGTAAGCATGG 58.311 47.619 0.00 0.00 32.65 3.66
4498 7245 1.128692 GTCAGTTCGTGTAAGCATGGC 59.871 52.381 0.00 0.00 32.65 4.40
4499 7246 1.155889 CAGTTCGTGTAAGCATGGCA 58.844 50.000 0.00 0.00 32.65 4.92
4500 7247 1.739466 CAGTTCGTGTAAGCATGGCAT 59.261 47.619 0.00 0.00 32.65 4.40
4501 7248 2.009774 AGTTCGTGTAAGCATGGCATC 58.990 47.619 0.00 0.00 32.65 3.91
4502 7249 1.064060 GTTCGTGTAAGCATGGCATCC 59.936 52.381 0.00 0.00 32.65 3.51
4503 7250 0.541392 TCGTGTAAGCATGGCATCCT 59.459 50.000 0.00 0.00 32.65 3.24
4504 7251 0.940126 CGTGTAAGCATGGCATCCTC 59.060 55.000 0.00 0.00 0.00 3.71
4505 7252 1.743431 CGTGTAAGCATGGCATCCTCA 60.743 52.381 0.00 0.00 0.00 3.86
4506 7253 2.368439 GTGTAAGCATGGCATCCTCAA 58.632 47.619 0.00 0.00 0.00 3.02
4507 7254 2.754552 GTGTAAGCATGGCATCCTCAAA 59.245 45.455 0.00 0.00 0.00 2.69
4508 7255 3.193267 GTGTAAGCATGGCATCCTCAAAA 59.807 43.478 0.00 0.00 0.00 2.44
4509 7256 3.831333 TGTAAGCATGGCATCCTCAAAAA 59.169 39.130 0.00 0.00 0.00 1.94
4528 7275 2.989422 AAAGTTCGTGTAAGCATGGC 57.011 45.000 0.00 0.00 32.65 4.40
4529 7276 0.796312 AAGTTCGTGTAAGCATGGCG 59.204 50.000 0.00 0.00 32.65 5.69
4530 7277 0.037697 AGTTCGTGTAAGCATGGCGA 60.038 50.000 0.00 0.00 32.65 5.54
4531 7278 1.006832 GTTCGTGTAAGCATGGCGAT 58.993 50.000 0.00 0.00 32.65 4.58
4532 7279 2.159156 AGTTCGTGTAAGCATGGCGATA 60.159 45.455 0.00 0.00 32.65 2.92
4533 7280 1.847818 TCGTGTAAGCATGGCGATAC 58.152 50.000 0.00 0.00 32.65 2.24
4534 7281 0.502695 CGTGTAAGCATGGCGATACG 59.497 55.000 0.00 0.00 31.74 3.06
4535 7282 1.847818 GTGTAAGCATGGCGATACGA 58.152 50.000 0.00 0.00 31.74 3.43
4536 7283 2.404215 GTGTAAGCATGGCGATACGAT 58.596 47.619 0.00 0.00 31.74 3.73
4537 7284 3.571571 GTGTAAGCATGGCGATACGATA 58.428 45.455 0.00 0.00 31.74 2.92
4538 7285 4.174009 GTGTAAGCATGGCGATACGATAT 58.826 43.478 0.00 0.00 31.74 1.63
4539 7286 4.031765 GTGTAAGCATGGCGATACGATATG 59.968 45.833 0.00 0.00 31.74 1.78
4540 7287 3.319137 AAGCATGGCGATACGATATGT 57.681 42.857 0.00 0.00 0.00 2.29
4541 7288 2.881074 AGCATGGCGATACGATATGTC 58.119 47.619 0.00 0.00 0.00 3.06
4542 7289 2.231235 AGCATGGCGATACGATATGTCA 59.769 45.455 0.00 0.00 0.00 3.58
4543 7290 2.993220 GCATGGCGATACGATATGTCAA 59.007 45.455 0.00 0.00 0.00 3.18
4544 7291 3.618594 GCATGGCGATACGATATGTCAAT 59.381 43.478 0.00 0.00 0.00 2.57
4545 7292 4.493057 GCATGGCGATACGATATGTCAATG 60.493 45.833 0.00 0.00 0.00 2.82
4546 7293 4.513198 TGGCGATACGATATGTCAATGA 57.487 40.909 0.00 0.00 0.00 2.57
4547 7294 4.877282 TGGCGATACGATATGTCAATGAA 58.123 39.130 0.00 0.00 0.00 2.57
4548 7295 4.923281 TGGCGATACGATATGTCAATGAAG 59.077 41.667 0.00 0.00 0.00 3.02
4549 7296 4.327357 GGCGATACGATATGTCAATGAAGG 59.673 45.833 0.00 0.00 0.00 3.46
4550 7297 4.923871 GCGATACGATATGTCAATGAAGGT 59.076 41.667 0.00 0.00 0.00 3.50
4551 7298 5.061064 GCGATACGATATGTCAATGAAGGTC 59.939 44.000 0.00 0.00 0.00 3.85
4552 7299 5.573282 CGATACGATATGTCAATGAAGGTCC 59.427 44.000 0.00 0.00 0.00 4.46
4553 7300 4.753516 ACGATATGTCAATGAAGGTCCA 57.246 40.909 0.00 0.00 0.00 4.02
4554 7301 4.442706 ACGATATGTCAATGAAGGTCCAC 58.557 43.478 0.00 0.00 0.00 4.02
4555 7302 3.809832 CGATATGTCAATGAAGGTCCACC 59.190 47.826 0.00 0.00 0.00 4.61
4569 7316 2.435372 TCCACCTGGATATTTGGCAC 57.565 50.000 0.00 0.00 39.78 5.01
4570 7317 1.638070 TCCACCTGGATATTTGGCACA 59.362 47.619 0.00 0.00 39.78 4.57
4571 7318 2.244510 TCCACCTGGATATTTGGCACAT 59.755 45.455 0.00 0.00 39.78 3.21
4572 7319 3.033184 CCACCTGGATATTTGGCACATT 58.967 45.455 0.00 0.00 35.76 2.71
4573 7320 3.451902 CCACCTGGATATTTGGCACATTT 59.548 43.478 0.00 0.00 35.76 2.32
4574 7321 4.080975 CCACCTGGATATTTGGCACATTTT 60.081 41.667 0.00 0.00 35.76 1.82
4575 7322 5.490159 CACCTGGATATTTGGCACATTTTT 58.510 37.500 0.00 0.00 39.30 1.94
4597 7344 7.880160 TTTTTCTTCTCAGGTTCATCTTGAA 57.120 32.000 0.00 0.00 33.32 2.69
4624 7371 4.829064 TTTTTCTCAGTTAACATGCGCT 57.171 36.364 9.73 0.00 0.00 5.92
4625 7372 4.829064 TTTTCTCAGTTAACATGCGCTT 57.171 36.364 9.73 0.00 0.00 4.68
4626 7373 4.829064 TTTCTCAGTTAACATGCGCTTT 57.171 36.364 9.73 1.43 0.00 3.51
4627 7374 3.811722 TCTCAGTTAACATGCGCTTTG 57.188 42.857 9.73 9.30 0.00 2.77
4628 7375 2.483877 TCTCAGTTAACATGCGCTTTGG 59.516 45.455 9.73 0.00 0.00 3.28
4629 7376 2.483877 CTCAGTTAACATGCGCTTTGGA 59.516 45.455 9.73 0.00 0.00 3.53
4630 7377 2.483877 TCAGTTAACATGCGCTTTGGAG 59.516 45.455 9.73 0.00 0.00 3.86
4631 7378 2.483877 CAGTTAACATGCGCTTTGGAGA 59.516 45.455 9.73 0.00 0.00 3.71
4632 7379 3.058293 CAGTTAACATGCGCTTTGGAGAA 60.058 43.478 9.73 0.13 0.00 2.87
4633 7380 3.568007 AGTTAACATGCGCTTTGGAGAAA 59.432 39.130 9.73 0.00 0.00 2.52
4634 7381 2.422276 AACATGCGCTTTGGAGAAAC 57.578 45.000 9.73 0.00 0.00 2.78
4635 7382 1.317613 ACATGCGCTTTGGAGAAACA 58.682 45.000 9.73 0.00 0.00 2.83
4636 7383 1.680735 ACATGCGCTTTGGAGAAACAA 59.319 42.857 9.73 0.00 0.00 2.83
4637 7384 2.287788 ACATGCGCTTTGGAGAAACAAG 60.288 45.455 9.73 0.00 0.00 3.16
4638 7385 1.674359 TGCGCTTTGGAGAAACAAGA 58.326 45.000 9.73 0.00 0.00 3.02
4639 7386 2.229792 TGCGCTTTGGAGAAACAAGAT 58.770 42.857 9.73 0.00 0.00 2.40
4640 7387 3.407698 TGCGCTTTGGAGAAACAAGATA 58.592 40.909 9.73 0.00 0.00 1.98
4641 7388 3.818210 TGCGCTTTGGAGAAACAAGATAA 59.182 39.130 9.73 0.00 0.00 1.75
4642 7389 4.458989 TGCGCTTTGGAGAAACAAGATAAT 59.541 37.500 9.73 0.00 0.00 1.28
4643 7390 4.795278 GCGCTTTGGAGAAACAAGATAATG 59.205 41.667 0.00 0.00 0.00 1.90
4644 7391 5.391950 GCGCTTTGGAGAAACAAGATAATGA 60.392 40.000 0.00 0.00 0.00 2.57
4645 7392 6.678900 GCGCTTTGGAGAAACAAGATAATGAT 60.679 38.462 0.00 0.00 0.00 2.45
4646 7393 7.253422 CGCTTTGGAGAAACAAGATAATGATT 58.747 34.615 0.00 0.00 0.00 2.57
4647 7394 7.430502 CGCTTTGGAGAAACAAGATAATGATTC 59.569 37.037 0.00 0.00 33.65 2.52
4648 7395 7.430502 GCTTTGGAGAAACAAGATAATGATTCG 59.569 37.037 0.00 0.00 37.23 3.34
4649 7396 6.925610 TGGAGAAACAAGATAATGATTCGG 57.074 37.500 0.00 0.00 37.23 4.30
4650 7397 5.822519 TGGAGAAACAAGATAATGATTCGGG 59.177 40.000 0.00 0.00 37.23 5.14
4651 7398 5.823045 GGAGAAACAAGATAATGATTCGGGT 59.177 40.000 0.00 0.00 37.23 5.28
4652 7399 6.318900 GGAGAAACAAGATAATGATTCGGGTT 59.681 38.462 0.00 0.00 37.23 4.11
4653 7400 7.088589 AGAAACAAGATAATGATTCGGGTTG 57.911 36.000 0.00 0.00 37.23 3.77
4654 7401 6.659242 AGAAACAAGATAATGATTCGGGTTGT 59.341 34.615 0.00 0.00 37.23 3.32
4655 7402 5.818136 ACAAGATAATGATTCGGGTTGTG 57.182 39.130 0.00 0.00 0.00 3.33
4656 7403 5.253330 ACAAGATAATGATTCGGGTTGTGT 58.747 37.500 0.00 0.00 0.00 3.72
4657 7404 5.710099 ACAAGATAATGATTCGGGTTGTGTT 59.290 36.000 0.00 0.00 0.00 3.32
4658 7405 5.818136 AGATAATGATTCGGGTTGTGTTG 57.182 39.130 0.00 0.00 0.00 3.33
4659 7406 5.253330 AGATAATGATTCGGGTTGTGTTGT 58.747 37.500 0.00 0.00 0.00 3.32
4660 7407 3.641437 AATGATTCGGGTTGTGTTGTG 57.359 42.857 0.00 0.00 0.00 3.33
4661 7408 2.333688 TGATTCGGGTTGTGTTGTGA 57.666 45.000 0.00 0.00 0.00 3.58
4662 7409 2.857483 TGATTCGGGTTGTGTTGTGAT 58.143 42.857 0.00 0.00 0.00 3.06
4663 7410 3.218453 TGATTCGGGTTGTGTTGTGATT 58.782 40.909 0.00 0.00 0.00 2.57
4664 7411 3.634448 TGATTCGGGTTGTGTTGTGATTT 59.366 39.130 0.00 0.00 0.00 2.17
4665 7412 4.098654 TGATTCGGGTTGTGTTGTGATTTT 59.901 37.500 0.00 0.00 0.00 1.82
4666 7413 4.457834 TTCGGGTTGTGTTGTGATTTTT 57.542 36.364 0.00 0.00 0.00 1.94
4700 7447 2.603953 GTGTAACTACGTTCCTCTGCC 58.396 52.381 0.00 0.00 0.00 4.85
4701 7448 1.547372 TGTAACTACGTTCCTCTGCCC 59.453 52.381 0.00 0.00 0.00 5.36
4702 7449 1.547372 GTAACTACGTTCCTCTGCCCA 59.453 52.381 0.00 0.00 0.00 5.36
4703 7450 0.320697 AACTACGTTCCTCTGCCCAC 59.679 55.000 0.00 0.00 0.00 4.61
4704 7451 1.218316 CTACGTTCCTCTGCCCACC 59.782 63.158 0.00 0.00 0.00 4.61
4705 7452 2.240162 CTACGTTCCTCTGCCCACCC 62.240 65.000 0.00 0.00 0.00 4.61
4706 7453 4.410400 CGTTCCTCTGCCCACCCC 62.410 72.222 0.00 0.00 0.00 4.95
4707 7454 4.410400 GTTCCTCTGCCCACCCCG 62.410 72.222 0.00 0.00 0.00 5.73
4708 7455 4.649705 TTCCTCTGCCCACCCCGA 62.650 66.667 0.00 0.00 0.00 5.14
4709 7456 4.649705 TCCTCTGCCCACCCCGAA 62.650 66.667 0.00 0.00 0.00 4.30
4710 7457 3.646715 CCTCTGCCCACCCCGAAA 61.647 66.667 0.00 0.00 0.00 3.46
4711 7458 2.434331 CTCTGCCCACCCCGAAAA 59.566 61.111 0.00 0.00 0.00 2.29
4712 7459 1.000896 CTCTGCCCACCCCGAAAAT 60.001 57.895 0.00 0.00 0.00 1.82
4713 7460 0.254747 CTCTGCCCACCCCGAAAATA 59.745 55.000 0.00 0.00 0.00 1.40
4714 7461 0.034863 TCTGCCCACCCCGAAAATAC 60.035 55.000 0.00 0.00 0.00 1.89
4715 7462 1.000646 TGCCCACCCCGAAAATACC 60.001 57.895 0.00 0.00 0.00 2.73
4716 7463 1.305287 GCCCACCCCGAAAATACCT 59.695 57.895 0.00 0.00 0.00 3.08
4717 7464 0.547553 GCCCACCCCGAAAATACCTA 59.452 55.000 0.00 0.00 0.00 3.08
4718 7465 1.748244 GCCCACCCCGAAAATACCTAC 60.748 57.143 0.00 0.00 0.00 3.18
4719 7466 1.560611 CCCACCCCGAAAATACCTACA 59.439 52.381 0.00 0.00 0.00 2.74
4720 7467 2.173996 CCCACCCCGAAAATACCTACAT 59.826 50.000 0.00 0.00 0.00 2.29
4721 7468 3.473625 CCACCCCGAAAATACCTACATC 58.526 50.000 0.00 0.00 0.00 3.06
4722 7469 3.128349 CACCCCGAAAATACCTACATCG 58.872 50.000 0.00 0.00 0.00 3.84
4725 7472 3.464111 CCGAAAATACCTACATCGGGT 57.536 47.619 4.67 0.00 46.97 5.28
4726 7473 3.800531 CCGAAAATACCTACATCGGGTT 58.199 45.455 4.67 0.00 46.97 4.11
4727 7474 3.805971 CCGAAAATACCTACATCGGGTTC 59.194 47.826 4.67 0.00 46.97 3.62
4728 7475 4.442472 CCGAAAATACCTACATCGGGTTCT 60.442 45.833 4.67 0.00 46.97 3.01
4729 7476 4.743644 CGAAAATACCTACATCGGGTTCTC 59.256 45.833 0.00 0.00 38.19 2.87
4730 7477 4.684484 AAATACCTACATCGGGTTCTCC 57.316 45.455 0.00 0.00 38.19 3.71
4731 7478 3.614568 ATACCTACATCGGGTTCTCCT 57.385 47.619 0.00 0.00 38.19 3.69
4732 7479 1.486211 ACCTACATCGGGTTCTCCTG 58.514 55.000 0.00 0.00 41.27 3.86
4744 7491 7.792364 TCGGGTTCTCCTGATATGTATATTT 57.208 36.000 0.00 0.00 43.49 1.40
4745 7492 8.202461 TCGGGTTCTCCTGATATGTATATTTT 57.798 34.615 0.00 0.00 43.49 1.82
4746 7493 8.656806 TCGGGTTCTCCTGATATGTATATTTTT 58.343 33.333 0.00 0.00 43.49 1.94
4791 7538 6.327279 ACCTTATTTTTGAGCTAAAACGCT 57.673 33.333 0.00 0.00 44.33 5.07
4865 7612 1.063717 CAGCCACCCAGGGATTACATT 60.064 52.381 14.54 0.00 38.09 2.71
5058 7805 3.259123 GGTTCTGGATTTGTTGGCAATCT 59.741 43.478 1.92 0.00 34.18 2.40
5079 7826 2.093106 GTCTCCATCTCCACGTACTGT 58.907 52.381 0.00 0.00 0.00 3.55
5204 7984 1.611261 CCCCCTGGTGGTCTCGTAA 60.611 63.158 0.00 0.00 0.00 3.18
5255 8035 0.031449 GAGTCCGTAGCTCCATCTGC 59.969 60.000 0.00 0.00 0.00 4.26
5273 8053 3.326006 TCTGCATTTATTTTTGCCCACCA 59.674 39.130 0.00 0.00 38.08 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
336 448 1.153901 GCGATTCACGACGAAGGGA 60.154 57.895 0.00 0.00 45.77 4.20
344 456 2.577059 GGGTGGAGCGATTCACGA 59.423 61.111 5.92 0.00 45.77 4.35
401 517 0.958091 CACCCCAAAATCTTGTCGCA 59.042 50.000 0.00 0.00 0.00 5.10
402 518 0.243636 CCACCCCAAAATCTTGTCGC 59.756 55.000 0.00 0.00 0.00 5.19
403 519 0.887933 CCCACCCCAAAATCTTGTCG 59.112 55.000 0.00 0.00 0.00 4.35
404 520 2.171003 CTCCCACCCCAAAATCTTGTC 58.829 52.381 0.00 0.00 0.00 3.18
405 521 1.786441 TCTCCCACCCCAAAATCTTGT 59.214 47.619 0.00 0.00 0.00 3.16
406 522 2.603075 TCTCCCACCCCAAAATCTTG 57.397 50.000 0.00 0.00 0.00 3.02
407 523 3.444029 CAATCTCCCACCCCAAAATCTT 58.556 45.455 0.00 0.00 0.00 2.40
408 524 2.889756 GCAATCTCCCACCCCAAAATCT 60.890 50.000 0.00 0.00 0.00 2.40
409 525 1.482182 GCAATCTCCCACCCCAAAATC 59.518 52.381 0.00 0.00 0.00 2.17
410 526 1.571955 GCAATCTCCCACCCCAAAAT 58.428 50.000 0.00 0.00 0.00 1.82
411 527 0.897863 CGCAATCTCCCACCCCAAAA 60.898 55.000 0.00 0.00 0.00 2.44
412 528 1.304052 CGCAATCTCCCACCCCAAA 60.304 57.895 0.00 0.00 0.00 3.28
413 529 2.354729 CGCAATCTCCCACCCCAA 59.645 61.111 0.00 0.00 0.00 4.12
414 530 3.727258 CCGCAATCTCCCACCCCA 61.727 66.667 0.00 0.00 0.00 4.96
415 531 4.506255 CCCGCAATCTCCCACCCC 62.506 72.222 0.00 0.00 0.00 4.95
416 532 2.284515 AATCCCGCAATCTCCCACCC 62.285 60.000 0.00 0.00 0.00 4.61
417 533 0.395724 AAATCCCGCAATCTCCCACC 60.396 55.000 0.00 0.00 0.00 4.61
418 534 0.740737 CAAATCCCGCAATCTCCCAC 59.259 55.000 0.00 0.00 0.00 4.61
419 535 0.395586 CCAAATCCCGCAATCTCCCA 60.396 55.000 0.00 0.00 0.00 4.37
420 536 1.109323 CCCAAATCCCGCAATCTCCC 61.109 60.000 0.00 0.00 0.00 4.30
421 537 1.109323 CCCCAAATCCCGCAATCTCC 61.109 60.000 0.00 0.00 0.00 3.71
422 538 1.109323 CCCCCAAATCCCGCAATCTC 61.109 60.000 0.00 0.00 0.00 2.75
423 539 1.076044 CCCCCAAATCCCGCAATCT 60.076 57.895 0.00 0.00 0.00 2.40
424 540 3.537388 CCCCCAAATCCCGCAATC 58.463 61.111 0.00 0.00 0.00 2.67
478 920 5.494724 CTCCCACTTCTCTCATTCATTTCA 58.505 41.667 0.00 0.00 0.00 2.69
487 929 0.041833 CTCCCCTCCCACTTCTCTCA 59.958 60.000 0.00 0.00 0.00 3.27
564 1008 0.253044 CCATCTGGTCGGTCCATTGT 59.747 55.000 0.00 0.00 46.12 2.71
568 1012 2.606213 TGCCATCTGGTCGGTCCA 60.606 61.111 0.00 0.00 45.01 4.02
571 1015 2.665000 CTGTGCCATCTGGTCGGT 59.335 61.111 0.00 0.00 37.57 4.69
587 1031 3.188786 GGTTTCATCGCTCGCGCT 61.189 61.111 5.56 0.00 39.59 5.92
646 1090 1.939785 CGAGCATACACGTCTCCGC 60.940 63.158 0.00 0.00 37.70 5.54
825 1269 1.335496 CATGCATGGATGATCGCAACA 59.665 47.619 21.61 0.00 38.01 3.33
899 1343 3.566853 CAGTAGTGCATGGCGCCG 61.567 66.667 23.90 9.82 40.23 6.46
985 1435 1.375908 GCATCTTGCAGGGACGACA 60.376 57.895 0.00 0.00 44.26 4.35
1109 1559 1.143305 CGGCAGATCGATCCATTCAC 58.857 55.000 21.66 6.01 0.00 3.18
1159 1631 6.763355 AGAGAAAAGTTAACAGATGAGCTCA 58.237 36.000 20.79 20.79 0.00 4.26
1161 1633 7.220030 TCAAGAGAAAAGTTAACAGATGAGCT 58.780 34.615 8.61 0.00 0.00 4.09
1178 1650 6.571605 CATCAAGTAGAGCAGATCAAGAGAA 58.428 40.000 0.00 0.00 0.00 2.87
1219 1693 3.626924 GCTGGTCCGGCGGGATAT 61.627 66.667 27.98 0.00 46.14 1.63
1241 1715 4.027884 TTCCCGGCGAAGATCAGA 57.972 55.556 9.30 0.00 0.00 3.27
1297 1771 2.182030 GCGTCGACTCCTTCTGGG 59.818 66.667 14.70 0.00 0.00 4.45
1448 1932 2.027653 TGCATGTCACACGGGAATCTAA 60.028 45.455 0.00 0.00 0.00 2.10
1458 1942 3.198068 CAGGTAGGTATGCATGTCACAC 58.802 50.000 10.16 0.00 0.00 3.82
1460 1944 2.838736 CCAGGTAGGTATGCATGTCAC 58.161 52.381 10.16 0.00 0.00 3.67
1471 1961 0.326618 ATGGTAGCAGCCAGGTAGGT 60.327 55.000 0.00 0.00 42.47 3.08
1473 1963 0.107456 CCATGGTAGCAGCCAGGTAG 59.893 60.000 2.57 0.00 42.47 3.18
1475 1965 1.616327 TCCATGGTAGCAGCCAGGT 60.616 57.895 12.58 0.00 42.47 4.00
1477 1967 0.463295 CAGTCCATGGTAGCAGCCAG 60.463 60.000 12.58 0.00 42.47 4.85
1480 1970 0.807667 CGTCAGTCCATGGTAGCAGC 60.808 60.000 12.58 0.00 0.00 5.25
1499 1989 4.436451 CGGTAAATTTTCCTAGTCGGCAAC 60.436 45.833 11.56 0.00 0.00 4.17
1500 1990 3.685756 CGGTAAATTTTCCTAGTCGGCAA 59.314 43.478 11.56 0.00 0.00 4.52
1501 1991 3.264104 CGGTAAATTTTCCTAGTCGGCA 58.736 45.455 11.56 0.00 0.00 5.69
1502 1992 2.610833 CCGGTAAATTTTCCTAGTCGGC 59.389 50.000 11.56 0.00 0.00 5.54
1677 2173 8.743714 ACCAGCCTTTTCTTAATATTTTCTCTG 58.256 33.333 0.00 0.00 0.00 3.35
1687 2183 4.824289 CATGCAACCAGCCTTTTCTTAAT 58.176 39.130 0.00 0.00 44.83 1.40
1694 2190 0.036765 CATGCATGCAACCAGCCTTT 60.037 50.000 26.68 0.80 44.83 3.11
1700 2196 7.329499 AGAATATTTTAACATGCATGCAACCA 58.671 30.769 26.68 7.52 0.00 3.67
1838 2344 9.745018 ATTGATCTTATTTTCAAGGTCTTCTCA 57.255 29.630 0.00 0.00 36.73 3.27
2071 2623 4.401202 GTCAGTTTTTGGAAGGAGTGGAAA 59.599 41.667 0.00 0.00 0.00 3.13
2336 2899 6.862209 TGAAATCGGGTTCTGAAATTATTGG 58.138 36.000 0.00 0.00 0.00 3.16
2351 2914 9.364989 TGCTTTTTAGAAATAATTGAAATCGGG 57.635 29.630 0.00 0.00 0.00 5.14
2529 3151 7.939039 AGAGTGAATCAGTTTTCCAAATCAGTA 59.061 33.333 0.00 0.00 0.00 2.74
2692 3314 8.404000 GCATGTGAGAAATGAGATACTTGATTT 58.596 33.333 0.00 0.00 0.00 2.17
2693 3315 7.555195 TGCATGTGAGAAATGAGATACTTGATT 59.445 33.333 0.00 0.00 0.00 2.57
2694 3316 7.012138 GTGCATGTGAGAAATGAGATACTTGAT 59.988 37.037 0.00 0.00 0.00 2.57
2705 3327 7.532571 TCTGAAATTAGTGCATGTGAGAAATG 58.467 34.615 0.00 0.00 0.00 2.32
3245 3876 6.460781 TGAGTGTGAAAGTATGTTATTCCGT 58.539 36.000 0.00 0.00 0.00 4.69
3310 5040 5.531634 TGTTTCAAATGAGTGAAATCTGGC 58.468 37.500 3.88 0.00 46.31 4.85
3529 5526 0.467844 CCATCCCGCAAATCCATGGA 60.468 55.000 18.88 18.88 36.84 3.41
4170 6903 0.111089 CTGCAACGAAGAGCAACGTC 60.111 55.000 0.00 0.00 41.87 4.34
4171 6904 1.498865 CCTGCAACGAAGAGCAACGT 61.499 55.000 0.00 0.00 44.57 3.99
4172 6905 1.205064 CCTGCAACGAAGAGCAACG 59.795 57.895 0.00 0.00 40.72 4.10
4283 7020 9.250624 CAAACCGTCAAATAAAGTTGGATAAAA 57.749 29.630 0.00 0.00 0.00 1.52
4286 7023 7.747155 TCAAACCGTCAAATAAAGTTGGATA 57.253 32.000 0.00 0.00 0.00 2.59
4290 7037 9.787532 ATGATATCAAACCGTCAAATAAAGTTG 57.212 29.630 9.99 0.00 0.00 3.16
4300 7047 6.205658 TGAACACAAATGATATCAAACCGTCA 59.794 34.615 9.99 5.33 0.00 4.35
4303 7050 8.464770 AAATGAACACAAATGATATCAAACCG 57.535 30.769 9.99 1.61 0.00 4.44
4312 7059 6.751157 TCAGCTGAAAATGAACACAAATGAT 58.249 32.000 15.67 0.00 0.00 2.45
4314 7061 5.404366 CCTCAGCTGAAAATGAACACAAATG 59.596 40.000 18.85 0.00 0.00 2.32
4322 7069 1.203038 TGGGCCTCAGCTGAAAATGAA 60.203 47.619 18.85 0.00 39.73 2.57
4363 7110 1.951130 CGCCCAATCCGACGATGAG 60.951 63.158 0.00 0.00 0.00 2.90
4366 7113 2.106332 GACGCCCAATCCGACGAT 59.894 61.111 0.00 0.00 0.00 3.73
4396 7143 2.540101 GACGATTTATTCAGCTGGTCCG 59.460 50.000 15.13 10.34 0.00 4.79
4404 7151 5.461526 TCGATGCTAGGACGATTTATTCAG 58.538 41.667 5.17 0.00 0.00 3.02
4405 7152 5.447624 TCGATGCTAGGACGATTTATTCA 57.552 39.130 5.17 0.00 0.00 2.57
4418 7165 1.794003 CGGACGCGATCGATGCTAG 60.794 63.158 21.57 4.53 39.41 3.42
4431 7178 4.900664 ACTTAAAAACTCAAACACGGACG 58.099 39.130 0.00 0.00 0.00 4.79
4441 7188 9.620660 GACTGACTTTTCAAACTTAAAAACTCA 57.379 29.630 0.00 0.00 0.00 3.41
4450 7197 7.824779 AGACACTTAGACTGACTTTTCAAACTT 59.175 33.333 0.00 0.00 0.00 2.66
4455 7202 7.284716 TGACTAGACACTTAGACTGACTTTTCA 59.715 37.037 0.00 0.00 0.00 2.69
4456 7203 7.649973 TGACTAGACACTTAGACTGACTTTTC 58.350 38.462 0.00 0.00 0.00 2.29
4459 7206 6.300703 ACTGACTAGACACTTAGACTGACTT 58.699 40.000 0.00 0.00 0.00 3.01
4460 7207 5.871834 ACTGACTAGACACTTAGACTGACT 58.128 41.667 0.00 0.00 0.00 3.41
4461 7208 6.563222 AACTGACTAGACACTTAGACTGAC 57.437 41.667 0.00 0.00 0.00 3.51
4462 7209 5.408909 CGAACTGACTAGACACTTAGACTGA 59.591 44.000 0.00 0.00 0.00 3.41
4463 7210 5.179742 ACGAACTGACTAGACACTTAGACTG 59.820 44.000 0.00 0.00 0.00 3.51
4464 7211 5.179742 CACGAACTGACTAGACACTTAGACT 59.820 44.000 0.00 0.00 0.00 3.24
4465 7212 5.049543 ACACGAACTGACTAGACACTTAGAC 60.050 44.000 0.00 0.00 0.00 2.59
4468 7215 6.567321 GCTTACACGAACTGACTAGACACTTA 60.567 42.308 0.00 0.00 0.00 2.24
4470 7217 4.320348 GCTTACACGAACTGACTAGACACT 60.320 45.833 0.00 0.00 0.00 3.55
4471 7218 3.913163 GCTTACACGAACTGACTAGACAC 59.087 47.826 0.00 0.00 0.00 3.67
4472 7219 3.566742 TGCTTACACGAACTGACTAGACA 59.433 43.478 0.00 0.00 0.00 3.41
4473 7220 4.156664 TGCTTACACGAACTGACTAGAC 57.843 45.455 0.00 0.00 0.00 2.59
4474 7221 4.380550 CCATGCTTACACGAACTGACTAGA 60.381 45.833 0.00 0.00 0.00 2.43
4475 7222 3.859961 CCATGCTTACACGAACTGACTAG 59.140 47.826 0.00 0.00 0.00 2.57
4476 7223 3.845178 CCATGCTTACACGAACTGACTA 58.155 45.455 0.00 0.00 0.00 2.59
4477 7224 2.688507 CCATGCTTACACGAACTGACT 58.311 47.619 0.00 0.00 0.00 3.41
4478 7225 1.128692 GCCATGCTTACACGAACTGAC 59.871 52.381 0.00 0.00 0.00 3.51
4479 7226 1.270571 TGCCATGCTTACACGAACTGA 60.271 47.619 0.00 0.00 0.00 3.41
4480 7227 1.155889 TGCCATGCTTACACGAACTG 58.844 50.000 0.00 0.00 0.00 3.16
4481 7228 2.009774 GATGCCATGCTTACACGAACT 58.990 47.619 0.00 0.00 0.00 3.01
4482 7229 1.064060 GGATGCCATGCTTACACGAAC 59.936 52.381 0.00 0.00 0.00 3.95
4483 7230 1.065491 AGGATGCCATGCTTACACGAA 60.065 47.619 0.00 0.00 0.00 3.85
4484 7231 0.541392 AGGATGCCATGCTTACACGA 59.459 50.000 0.00 0.00 0.00 4.35
4485 7232 0.940126 GAGGATGCCATGCTTACACG 59.060 55.000 0.00 0.00 0.00 4.49
4486 7233 2.042686 TGAGGATGCCATGCTTACAC 57.957 50.000 0.00 0.00 0.00 2.90
4487 7234 2.804986 TTGAGGATGCCATGCTTACA 57.195 45.000 0.00 0.00 0.00 2.41
4488 7235 4.454728 TTTTTGAGGATGCCATGCTTAC 57.545 40.909 0.00 0.00 0.00 2.34
4507 7254 3.638484 GCCATGCTTACACGAACTTTTT 58.362 40.909 0.00 0.00 0.00 1.94
4508 7255 2.350388 CGCCATGCTTACACGAACTTTT 60.350 45.455 0.00 0.00 0.00 2.27
4509 7256 1.196808 CGCCATGCTTACACGAACTTT 59.803 47.619 0.00 0.00 0.00 2.66
4510 7257 0.796312 CGCCATGCTTACACGAACTT 59.204 50.000 0.00 0.00 0.00 2.66
4511 7258 0.037697 TCGCCATGCTTACACGAACT 60.038 50.000 0.00 0.00 0.00 3.01
4512 7259 1.006832 ATCGCCATGCTTACACGAAC 58.993 50.000 0.00 0.00 36.22 3.95
4513 7260 2.198406 GTATCGCCATGCTTACACGAA 58.802 47.619 0.00 0.00 36.22 3.85
4514 7261 1.847818 GTATCGCCATGCTTACACGA 58.152 50.000 0.00 0.00 37.15 4.35
4515 7262 0.502695 CGTATCGCCATGCTTACACG 59.497 55.000 0.00 0.00 0.00 4.49
4516 7263 1.847818 TCGTATCGCCATGCTTACAC 58.152 50.000 0.00 0.00 0.00 2.90
4517 7264 2.812358 ATCGTATCGCCATGCTTACA 57.188 45.000 0.00 0.00 0.00 2.41
4518 7265 4.174009 ACATATCGTATCGCCATGCTTAC 58.826 43.478 0.00 0.00 0.00 2.34
4519 7266 4.082463 TGACATATCGTATCGCCATGCTTA 60.082 41.667 0.00 0.00 0.00 3.09
4520 7267 3.254060 GACATATCGTATCGCCATGCTT 58.746 45.455 0.00 0.00 0.00 3.91
4521 7268 2.231235 TGACATATCGTATCGCCATGCT 59.769 45.455 0.00 0.00 0.00 3.79
4522 7269 2.606108 TGACATATCGTATCGCCATGC 58.394 47.619 0.00 0.00 0.00 4.06
4523 7270 4.864247 TCATTGACATATCGTATCGCCATG 59.136 41.667 0.00 0.00 0.00 3.66
4524 7271 5.072040 TCATTGACATATCGTATCGCCAT 57.928 39.130 0.00 0.00 0.00 4.40
4525 7272 4.513198 TCATTGACATATCGTATCGCCA 57.487 40.909 0.00 0.00 0.00 5.69
4526 7273 4.327357 CCTTCATTGACATATCGTATCGCC 59.673 45.833 0.00 0.00 0.00 5.54
4527 7274 4.923871 ACCTTCATTGACATATCGTATCGC 59.076 41.667 0.00 0.00 0.00 4.58
4528 7275 5.573282 GGACCTTCATTGACATATCGTATCG 59.427 44.000 0.00 0.00 0.00 2.92
4529 7276 6.366332 GTGGACCTTCATTGACATATCGTATC 59.634 42.308 0.00 0.00 0.00 2.24
4530 7277 6.223852 GTGGACCTTCATTGACATATCGTAT 58.776 40.000 0.00 0.00 0.00 3.06
4531 7278 5.452776 GGTGGACCTTCATTGACATATCGTA 60.453 44.000 0.00 0.00 0.00 3.43
4532 7279 4.442706 GTGGACCTTCATTGACATATCGT 58.557 43.478 0.00 0.00 0.00 3.73
4533 7280 3.809832 GGTGGACCTTCATTGACATATCG 59.190 47.826 0.00 0.00 0.00 2.92
4534 7281 4.818546 CAGGTGGACCTTCATTGACATATC 59.181 45.833 0.00 0.00 46.09 1.63
4535 7282 4.385643 CCAGGTGGACCTTCATTGACATAT 60.386 45.833 0.00 0.00 46.09 1.78
4536 7283 3.054434 CCAGGTGGACCTTCATTGACATA 60.054 47.826 0.00 0.00 46.09 2.29
4537 7284 2.291153 CCAGGTGGACCTTCATTGACAT 60.291 50.000 0.00 0.00 46.09 3.06
4538 7285 1.073763 CCAGGTGGACCTTCATTGACA 59.926 52.381 0.00 0.00 46.09 3.58
4539 7286 1.351017 TCCAGGTGGACCTTCATTGAC 59.649 52.381 0.00 0.00 46.09 3.18
4540 7287 1.741028 TCCAGGTGGACCTTCATTGA 58.259 50.000 0.00 0.00 46.09 2.57
4551 7298 2.142356 TGTGCCAAATATCCAGGTGG 57.858 50.000 0.00 0.00 0.00 4.61
4552 7299 4.741321 AAATGTGCCAAATATCCAGGTG 57.259 40.909 0.00 0.00 0.00 4.00
4553 7300 5.760484 AAAAATGTGCCAAATATCCAGGT 57.240 34.783 0.00 0.00 0.00 4.00
4573 7320 7.880160 TTCAAGATGAACCTGAGAAGAAAAA 57.120 32.000 0.00 0.00 30.26 1.94
4603 7350 4.829064 AGCGCATGTTAACTGAGAAAAA 57.171 36.364 11.47 0.00 0.00 1.94
4604 7351 4.829064 AAGCGCATGTTAACTGAGAAAA 57.171 36.364 11.47 0.00 0.00 2.29
4605 7352 4.536065 CAAAGCGCATGTTAACTGAGAAA 58.464 39.130 11.47 0.00 0.00 2.52
4606 7353 3.058293 CCAAAGCGCATGTTAACTGAGAA 60.058 43.478 11.47 0.00 0.00 2.87
4607 7354 2.483877 CCAAAGCGCATGTTAACTGAGA 59.516 45.455 11.47 0.00 0.00 3.27
4608 7355 2.483877 TCCAAAGCGCATGTTAACTGAG 59.516 45.455 11.47 5.90 0.00 3.35
4609 7356 2.483877 CTCCAAAGCGCATGTTAACTGA 59.516 45.455 11.47 0.00 0.00 3.41
4610 7357 2.483877 TCTCCAAAGCGCATGTTAACTG 59.516 45.455 11.47 4.14 0.00 3.16
4611 7358 2.778299 TCTCCAAAGCGCATGTTAACT 58.222 42.857 11.47 0.00 0.00 2.24
4612 7359 3.552604 TTCTCCAAAGCGCATGTTAAC 57.447 42.857 11.47 0.00 0.00 2.01
4613 7360 3.316588 TGTTTCTCCAAAGCGCATGTTAA 59.683 39.130 11.47 0.00 0.00 2.01
4614 7361 2.881513 TGTTTCTCCAAAGCGCATGTTA 59.118 40.909 11.47 0.00 0.00 2.41
4615 7362 1.680735 TGTTTCTCCAAAGCGCATGTT 59.319 42.857 11.47 0.00 0.00 2.71
4616 7363 1.317613 TGTTTCTCCAAAGCGCATGT 58.682 45.000 11.47 0.00 0.00 3.21
4617 7364 2.030893 TCTTGTTTCTCCAAAGCGCATG 60.031 45.455 11.47 8.38 0.00 4.06
4618 7365 2.229792 TCTTGTTTCTCCAAAGCGCAT 58.770 42.857 11.47 0.00 0.00 4.73
4619 7366 1.674359 TCTTGTTTCTCCAAAGCGCA 58.326 45.000 11.47 0.00 0.00 6.09
4620 7367 2.997485 ATCTTGTTTCTCCAAAGCGC 57.003 45.000 0.00 0.00 0.00 5.92
4621 7368 6.182039 TCATTATCTTGTTTCTCCAAAGCG 57.818 37.500 0.00 0.00 0.00 4.68
4622 7369 7.430502 CGAATCATTATCTTGTTTCTCCAAAGC 59.569 37.037 0.00 0.00 0.00 3.51
4623 7370 7.912250 CCGAATCATTATCTTGTTTCTCCAAAG 59.088 37.037 0.00 0.00 0.00 2.77
4624 7371 7.148086 CCCGAATCATTATCTTGTTTCTCCAAA 60.148 37.037 0.00 0.00 0.00 3.28
4625 7372 6.318648 CCCGAATCATTATCTTGTTTCTCCAA 59.681 38.462 0.00 0.00 0.00 3.53
4626 7373 5.822519 CCCGAATCATTATCTTGTTTCTCCA 59.177 40.000 0.00 0.00 0.00 3.86
4627 7374 5.823045 ACCCGAATCATTATCTTGTTTCTCC 59.177 40.000 0.00 0.00 0.00 3.71
4628 7375 6.927294 ACCCGAATCATTATCTTGTTTCTC 57.073 37.500 0.00 0.00 0.00 2.87
4629 7376 6.659242 ACAACCCGAATCATTATCTTGTTTCT 59.341 34.615 0.00 0.00 0.00 2.52
4630 7377 6.747280 CACAACCCGAATCATTATCTTGTTTC 59.253 38.462 0.00 0.00 0.00 2.78
4631 7378 6.208599 ACACAACCCGAATCATTATCTTGTTT 59.791 34.615 0.00 0.00 0.00 2.83
4632 7379 5.710099 ACACAACCCGAATCATTATCTTGTT 59.290 36.000 0.00 0.00 0.00 2.83
4633 7380 5.253330 ACACAACCCGAATCATTATCTTGT 58.747 37.500 0.00 0.00 0.00 3.16
4634 7381 5.818136 ACACAACCCGAATCATTATCTTG 57.182 39.130 0.00 0.00 0.00 3.02
4635 7382 5.710099 ACAACACAACCCGAATCATTATCTT 59.290 36.000 0.00 0.00 0.00 2.40
4636 7383 5.123820 CACAACACAACCCGAATCATTATCT 59.876 40.000 0.00 0.00 0.00 1.98
4637 7384 5.123186 TCACAACACAACCCGAATCATTATC 59.877 40.000 0.00 0.00 0.00 1.75
4638 7385 5.007034 TCACAACACAACCCGAATCATTAT 58.993 37.500 0.00 0.00 0.00 1.28
4639 7386 4.390264 TCACAACACAACCCGAATCATTA 58.610 39.130 0.00 0.00 0.00 1.90
4640 7387 3.218453 TCACAACACAACCCGAATCATT 58.782 40.909 0.00 0.00 0.00 2.57
4641 7388 2.857483 TCACAACACAACCCGAATCAT 58.143 42.857 0.00 0.00 0.00 2.45
4642 7389 2.333688 TCACAACACAACCCGAATCA 57.666 45.000 0.00 0.00 0.00 2.57
4643 7390 3.915437 AATCACAACACAACCCGAATC 57.085 42.857 0.00 0.00 0.00 2.52
4644 7391 4.664150 AAAATCACAACACAACCCGAAT 57.336 36.364 0.00 0.00 0.00 3.34
4645 7392 4.457834 AAAAATCACAACACAACCCGAA 57.542 36.364 0.00 0.00 0.00 4.30
4663 7410 6.797454 AGTTACACTTTGTTGCGGATAAAAA 58.203 32.000 0.00 0.00 0.00 1.94
4664 7411 6.380095 AGTTACACTTTGTTGCGGATAAAA 57.620 33.333 0.00 0.00 0.00 1.52
4665 7412 6.346758 CGTAGTTACACTTTGTTGCGGATAAA 60.347 38.462 0.00 0.00 0.00 1.40
4666 7413 5.118971 CGTAGTTACACTTTGTTGCGGATAA 59.881 40.000 0.00 0.00 0.00 1.75
4667 7414 4.622313 CGTAGTTACACTTTGTTGCGGATA 59.378 41.667 0.00 0.00 0.00 2.59
4668 7415 3.430895 CGTAGTTACACTTTGTTGCGGAT 59.569 43.478 0.00 0.00 0.00 4.18
4669 7416 2.796031 CGTAGTTACACTTTGTTGCGGA 59.204 45.455 0.00 0.00 0.00 5.54
4670 7417 2.540931 ACGTAGTTACACTTTGTTGCGG 59.459 45.455 0.00 0.00 37.78 5.69
4671 7418 3.847037 ACGTAGTTACACTTTGTTGCG 57.153 42.857 0.00 0.00 37.78 4.85
4686 7433 1.218316 GGTGGGCAGAGGAACGTAG 59.782 63.158 0.00 0.00 0.00 3.51
4687 7434 2.288025 GGGTGGGCAGAGGAACGTA 61.288 63.158 0.00 0.00 0.00 3.57
4688 7435 3.637273 GGGTGGGCAGAGGAACGT 61.637 66.667 0.00 0.00 0.00 3.99
4689 7436 4.410400 GGGGTGGGCAGAGGAACG 62.410 72.222 0.00 0.00 0.00 3.95
4690 7437 4.410400 CGGGGTGGGCAGAGGAAC 62.410 72.222 0.00 0.00 0.00 3.62
4691 7438 4.649705 TCGGGGTGGGCAGAGGAA 62.650 66.667 0.00 0.00 0.00 3.36
4692 7439 4.649705 TTCGGGGTGGGCAGAGGA 62.650 66.667 0.00 0.00 0.00 3.71
4693 7440 2.499303 ATTTTCGGGGTGGGCAGAGG 62.499 60.000 0.00 0.00 0.00 3.69
4694 7441 0.254747 TATTTTCGGGGTGGGCAGAG 59.745 55.000 0.00 0.00 0.00 3.35
4695 7442 0.034863 GTATTTTCGGGGTGGGCAGA 60.035 55.000 0.00 0.00 0.00 4.26
4696 7443 1.035385 GGTATTTTCGGGGTGGGCAG 61.035 60.000 0.00 0.00 0.00 4.85
4697 7444 1.000646 GGTATTTTCGGGGTGGGCA 60.001 57.895 0.00 0.00 0.00 5.36
4698 7445 0.547553 TAGGTATTTTCGGGGTGGGC 59.452 55.000 0.00 0.00 0.00 5.36
4699 7446 1.560611 TGTAGGTATTTTCGGGGTGGG 59.439 52.381 0.00 0.00 0.00 4.61
4700 7447 3.473625 GATGTAGGTATTTTCGGGGTGG 58.526 50.000 0.00 0.00 0.00 4.61
4701 7448 3.128349 CGATGTAGGTATTTTCGGGGTG 58.872 50.000 0.00 0.00 0.00 4.61
4702 7449 2.103601 CCGATGTAGGTATTTTCGGGGT 59.896 50.000 1.85 0.00 44.24 4.95
4703 7450 2.762745 CCGATGTAGGTATTTTCGGGG 58.237 52.381 1.85 0.00 44.24 5.73
4705 7452 3.464111 ACCCGATGTAGGTATTTTCGG 57.536 47.619 2.80 2.80 46.79 4.30
4706 7453 4.690122 AGAACCCGATGTAGGTATTTTCG 58.310 43.478 0.00 0.00 36.27 3.46
4707 7454 5.055144 GGAGAACCCGATGTAGGTATTTTC 58.945 45.833 0.00 0.00 36.27 2.29
4708 7455 4.720273 AGGAGAACCCGATGTAGGTATTTT 59.280 41.667 0.00 0.00 40.87 1.82
4709 7456 4.101119 CAGGAGAACCCGATGTAGGTATTT 59.899 45.833 0.00 0.00 40.87 1.40
4710 7457 3.641906 CAGGAGAACCCGATGTAGGTATT 59.358 47.826 0.00 0.00 40.87 1.89
4711 7458 3.117246 TCAGGAGAACCCGATGTAGGTAT 60.117 47.826 0.00 0.00 40.87 2.73
4712 7459 2.242965 TCAGGAGAACCCGATGTAGGTA 59.757 50.000 0.00 0.00 40.87 3.08
4713 7460 1.006758 TCAGGAGAACCCGATGTAGGT 59.993 52.381 0.00 0.00 40.87 3.08
4714 7461 1.776662 TCAGGAGAACCCGATGTAGG 58.223 55.000 0.00 0.00 40.87 3.18
4715 7462 4.524714 ACATATCAGGAGAACCCGATGTAG 59.475 45.833 0.00 0.00 40.87 2.74
4716 7463 4.480115 ACATATCAGGAGAACCCGATGTA 58.520 43.478 0.00 0.00 40.87 2.29
4717 7464 3.309296 ACATATCAGGAGAACCCGATGT 58.691 45.455 0.00 0.00 40.87 3.06
4718 7465 5.667539 ATACATATCAGGAGAACCCGATG 57.332 43.478 0.00 0.00 40.87 3.84
4719 7466 7.979786 AATATACATATCAGGAGAACCCGAT 57.020 36.000 0.00 0.00 40.87 4.18
4720 7467 7.792364 AAATATACATATCAGGAGAACCCGA 57.208 36.000 0.00 0.00 40.87 5.14
4721 7468 8.848474 AAAAATATACATATCAGGAGAACCCG 57.152 34.615 0.00 0.00 40.87 5.28
4764 7511 9.777575 GCGTTTTAGCTCAAAAATAAGGTATTA 57.222 29.630 0.00 0.00 37.85 0.98
4765 7512 8.520351 AGCGTTTTAGCTCAAAAATAAGGTATT 58.480 29.630 0.00 0.00 45.67 1.89
4766 7513 8.051901 AGCGTTTTAGCTCAAAAATAAGGTAT 57.948 30.769 0.00 0.00 45.67 2.73
4767 7514 7.443259 AGCGTTTTAGCTCAAAAATAAGGTA 57.557 32.000 0.00 0.00 45.67 3.08
4768 7515 6.327279 AGCGTTTTAGCTCAAAAATAAGGT 57.673 33.333 0.00 0.00 45.67 3.50
4791 7538 5.611374 CCTGATAAATAAAGAGCCGGAAGA 58.389 41.667 5.05 0.00 0.00 2.87
4885 7632 3.758300 CGAGGCATGCGTTAAATCTTTT 58.242 40.909 15.04 0.00 0.00 2.27
4921 7668 2.279918 CCGGCGGACTAATTCGGG 60.280 66.667 24.41 0.00 37.35 5.14
5058 7805 5.161776 CTACAGTACGTGGAGATGGAGACA 61.162 50.000 0.00 0.00 40.01 3.41
5079 7826 1.984570 AGCGCAGAACTCAGGGCTA 60.985 57.895 11.47 0.00 46.58 3.93
5204 7984 0.258774 AGGTGGTGCAGGTTTTGTCT 59.741 50.000 0.00 0.00 0.00 3.41
5255 8035 4.384056 TGTGTGGTGGGCAAAAATAAATG 58.616 39.130 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.