Multiple sequence alignment - TraesCS5B01G260500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G260500 chr5B 100.000 4770 0 0 1 4770 443287961 443292730 0.000000e+00 8809.0
1 TraesCS5B01G260500 chr5B 85.118 1700 218 12 2077 3750 460942530 460944220 0.000000e+00 1705.0
2 TraesCS5B01G260500 chr5B 76.812 1242 257 28 2524 3748 460494942 460493715 0.000000e+00 669.0
3 TraesCS5B01G260500 chr5B 91.243 354 28 3 252 603 22047173 22047525 3.340000e-131 479.0
4 TraesCS5B01G260500 chr5B 83.857 477 32 14 3481 3949 460938434 460938873 3.440000e-111 412.0
5 TraesCS5B01G260500 chr5B 92.058 277 17 4 1735 2009 460941418 460941691 7.490000e-103 385.0
6 TraesCS5B01G260500 chr5B 81.205 415 61 9 1 411 5416139 5416540 7.700000e-83 318.0
7 TraesCS5B01G260500 chr5B 84.751 341 24 9 914 1228 460940533 460940871 2.770000e-82 316.0
8 TraesCS5B01G260500 chr5B 94.118 170 9 1 1347 1516 405526490 405526322 1.700000e-64 257.0
9 TraesCS5B01G260500 chr5B 78.571 126 14 7 706 828 460940382 460940497 2.380000e-08 71.3
10 TraesCS5B01G260500 chr5D 97.432 3271 41 6 1508 4770 373214852 373218087 0.000000e+00 5535.0
11 TraesCS5B01G260500 chr5D 92.972 1679 115 3 2079 3755 384143049 384144726 0.000000e+00 2444.0
12 TraesCS5B01G260500 chr5D 85.622 1697 212 9 2079 3750 384153738 384155427 0.000000e+00 1753.0
13 TraesCS5B01G260500 chr5D 84.850 1637 211 11 2078 3686 404880869 404882496 0.000000e+00 1615.0
14 TraesCS5B01G260500 chr5D 95.914 979 34 4 252 1229 373213600 373214573 0.000000e+00 1581.0
15 TraesCS5B01G260500 chr5D 87.227 642 48 19 1 610 458640787 458640148 0.000000e+00 701.0
16 TraesCS5B01G260500 chr5D 76.741 1264 264 24 2524 3772 384019216 384017968 0.000000e+00 678.0
17 TraesCS5B01G260500 chr5D 94.239 243 14 0 3 245 373213302 373213544 5.830000e-99 372.0
18 TraesCS5B01G260500 chr5D 91.255 263 19 3 1742 2003 384152629 384152888 5.870000e-94 355.0
19 TraesCS5B01G260500 chr5D 94.222 225 11 1 1742 1966 404879029 404879251 4.570000e-90 342.0
20 TraesCS5B01G260500 chr5D 88.321 274 21 4 1737 2009 384141316 384141579 7.700000e-83 318.0
21 TraesCS5B01G260500 chr5D 83.235 340 30 7 914 1228 384151770 384152107 2.170000e-73 287.0
22 TraesCS5B01G260500 chr5D 87.273 220 17 5 1516 1735 404878663 404878871 1.720000e-59 241.0
23 TraesCS5B01G260500 chr5D 85.408 233 21 7 1511 1743 384140951 384141170 3.710000e-56 230.0
24 TraesCS5B01G260500 chr5D 92.308 117 8 1 997 1112 404878076 404878192 1.060000e-36 165.0
25 TraesCS5B01G260500 chr5D 93.578 109 4 2 3812 3919 384144751 384144857 4.940000e-35 159.0
26 TraesCS5B01G260500 chr5D 98.000 50 1 0 1300 1349 373214804 373214853 2.360000e-13 87.9
27 TraesCS5B01G260500 chr5D 83.333 96 4 7 767 856 384151685 384151774 1.420000e-10 78.7
28 TraesCS5B01G260500 chr5A 89.334 2297 178 31 1508 3756 484833191 484835468 0.000000e+00 2822.0
29 TraesCS5B01G260500 chr5A 91.548 1680 136 6 2079 3755 484589237 484590913 0.000000e+00 2311.0
30 TraesCS5B01G260500 chr5A 85.024 1696 219 12 2078 3746 509126602 509124915 0.000000e+00 1692.0
31 TraesCS5B01G260500 chr5A 83.333 1278 181 7 2077 3330 484839522 484840791 0.000000e+00 1151.0
32 TraesCS5B01G260500 chr5A 94.074 270 12 3 1742 2009 509128327 509128060 1.600000e-109 407.0
33 TraesCS5B01G260500 chr5A 84.234 444 30 16 924 1350 509137597 509137177 3.460000e-106 396.0
34 TraesCS5B01G260500 chr5A 88.686 274 20 4 1737 2009 484587554 484587817 1.660000e-84 324.0
35 TraesCS5B01G260500 chr5A 95.238 168 7 1 1347 1514 376346767 376346933 1.020000e-66 265.0
36 TraesCS5B01G260500 chr5A 91.304 184 12 2 1742 1925 484838484 484838663 1.030000e-61 248.0
37 TraesCS5B01G260500 chr5A 85.408 233 21 7 1511 1743 484587192 484587411 3.710000e-56 230.0
38 TraesCS5B01G260500 chr5A 81.739 230 25 5 878 1103 484837725 484837941 4.910000e-40 176.0
39 TraesCS5B01G260500 chr5A 88.028 142 10 5 3812 3949 484590938 484591076 1.370000e-35 161.0
40 TraesCS5B01G260500 chr5A 86.614 127 14 2 1612 1738 509128606 509128483 2.320000e-28 137.0
41 TraesCS5B01G260500 chr5A 100.000 33 0 0 1318 1350 484838083 484838115 1.430000e-05 62.1
42 TraesCS5B01G260500 chr5A 100.000 29 0 0 770 798 484837666 484837694 2.000000e-03 54.7
43 TraesCS5B01G260500 chrUn 88.430 605 63 6 3 603 56398737 56398136 0.000000e+00 723.0
44 TraesCS5B01G260500 chr7D 87.005 631 52 16 1 603 608224929 608224301 0.000000e+00 684.0
45 TraesCS5B01G260500 chr1A 90.722 388 29 6 220 605 2158489 2158107 1.180000e-140 510.0
46 TraesCS5B01G260500 chr1A 86.247 429 31 7 4199 4626 372220037 372219636 1.580000e-119 440.0
47 TraesCS5B01G260500 chr1A 83.204 387 33 19 4386 4770 372219814 372219458 4.600000e-85 326.0
48 TraesCS5B01G260500 chr1A 95.210 167 8 0 1343 1509 254348910 254349076 1.020000e-66 265.0
49 TraesCS5B01G260500 chr6D 91.785 353 27 2 252 603 277054656 277054305 1.540000e-134 490.0
50 TraesCS5B01G260500 chr6D 92.742 248 18 0 1 248 277054959 277054712 4.540000e-95 359.0
51 TraesCS5B01G260500 chr2D 91.136 361 29 3 252 609 638873381 638873741 2.000000e-133 486.0
52 TraesCS5B01G260500 chr2D 93.676 253 14 1 1 253 618298092 618297842 1.250000e-100 377.0
53 TraesCS5B01G260500 chr2D 92.105 266 17 3 1 263 638873081 638873345 5.830000e-99 372.0
54 TraesCS5B01G260500 chr2D 95.322 171 6 2 1344 1512 27073322 27073492 2.190000e-68 270.0
55 TraesCS5B01G260500 chr1D 91.573 356 24 5 253 603 458395763 458396117 2.000000e-133 486.0
56 TraesCS5B01G260500 chr1B 83.811 488 58 12 1 479 11852844 11853319 1.220000e-120 444.0
57 TraesCS5B01G260500 chr1B 93.642 173 10 1 1342 1513 136439988 136440160 1.700000e-64 257.0
58 TraesCS5B01G260500 chr3D 91.339 254 16 1 1 248 96675005 96674752 4.570000e-90 342.0
59 TraesCS5B01G260500 chr3D 96.341 164 6 0 1346 1509 525470950 525471113 2.190000e-68 270.0
60 TraesCS5B01G260500 chr3D 96.341 164 6 0 1347 1510 548543960 548543797 2.190000e-68 270.0
61 TraesCS5B01G260500 chr2B 95.181 166 8 0 1345 1510 134256687 134256852 3.660000e-66 263.0
62 TraesCS5B01G260500 chr7B 93.182 176 8 4 1347 1519 411745439 411745265 6.130000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G260500 chr5B 443287961 443292730 4769 False 8809.000000 8809 100.000000 1 4770 1 chr5B.!!$F3 4769
1 TraesCS5B01G260500 chr5B 460493715 460494942 1227 True 669.000000 669 76.812000 2524 3748 1 chr5B.!!$R2 1224
2 TraesCS5B01G260500 chr5B 460938434 460944220 5786 False 577.860000 1705 84.871000 706 3949 5 chr5B.!!$F4 3243
3 TraesCS5B01G260500 chr5D 373213302 373218087 4785 False 1893.975000 5535 96.396250 3 4770 4 chr5D.!!$F1 4767
4 TraesCS5B01G260500 chr5D 384140951 384144857 3906 False 787.750000 2444 90.069750 1511 3919 4 chr5D.!!$F2 2408
5 TraesCS5B01G260500 chr5D 458640148 458640787 639 True 701.000000 701 87.227000 1 610 1 chr5D.!!$R2 609
6 TraesCS5B01G260500 chr5D 384017968 384019216 1248 True 678.000000 678 76.741000 2524 3772 1 chr5D.!!$R1 1248
7 TraesCS5B01G260500 chr5D 384151685 384155427 3742 False 618.425000 1753 85.861250 767 3750 4 chr5D.!!$F3 2983
8 TraesCS5B01G260500 chr5D 404878076 404882496 4420 False 590.750000 1615 89.663250 997 3686 4 chr5D.!!$F4 2689
9 TraesCS5B01G260500 chr5A 484587192 484591076 3884 False 756.500000 2311 88.417500 1511 3949 4 chr5A.!!$F2 2438
10 TraesCS5B01G260500 chr5A 484833191 484840791 7600 False 752.300000 2822 90.951667 770 3756 6 chr5A.!!$F3 2986
11 TraesCS5B01G260500 chr5A 509124915 509128606 3691 True 745.333333 1692 88.570667 1612 3746 3 chr5A.!!$R2 2134
12 TraesCS5B01G260500 chrUn 56398136 56398737 601 True 723.000000 723 88.430000 3 603 1 chrUn.!!$R1 600
13 TraesCS5B01G260500 chr7D 608224301 608224929 628 True 684.000000 684 87.005000 1 603 1 chr7D.!!$R1 602
14 TraesCS5B01G260500 chr1A 372219458 372220037 579 True 383.000000 440 84.725500 4199 4770 2 chr1A.!!$R2 571
15 TraesCS5B01G260500 chr6D 277054305 277054959 654 True 424.500000 490 92.263500 1 603 2 chr6D.!!$R1 602
16 TraesCS5B01G260500 chr2D 638873081 638873741 660 False 429.000000 486 91.620500 1 609 2 chr2D.!!$F2 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 657 0.105224 TCTTTTTCGGCGTCCTGTGA 59.895 50.000 6.85 0.0 0.0 3.58 F
631 709 0.872388 GCACAAACCTAGTTCCCGTG 59.128 55.000 0.00 0.0 0.0 4.94 F
2392 5977 1.342076 TGTGGAGAGGACGGAATAGCT 60.342 52.381 0.00 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2422 6007 0.683973 TGCATGGGCGGTTTTTCAAT 59.316 45.0 0.00 0.0 45.35 2.57 R
3139 6733 6.305272 AGAACTGGTGTATCAATCATCTGT 57.695 37.5 0.00 0.0 31.34 3.41 R
4075 7690 0.303796 GCACGCGCCTTAACTTATCC 59.696 55.0 5.73 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.030562 CTTGCTCCGGACCAACGT 59.969 61.111 8.15 0.00 0.00 3.99
78 79 2.612212 GACGCAAAGAAGAGGAACAACA 59.388 45.455 0.00 0.00 0.00 3.33
135 136 2.433318 GCGGCGACAAGAAGCTCT 60.433 61.111 12.98 0.00 0.00 4.09
180 181 5.047448 CGTGACCTCATCCTGAATCAGATAT 60.047 44.000 12.53 2.07 32.44 1.63
336 411 2.298163 ACGTTTGATGTACTCCTTCCGT 59.702 45.455 0.00 0.00 0.00 4.69
385 460 9.498176 AACTACTACGTGTCCTTTTATTTGATT 57.502 29.630 0.00 0.00 0.00 2.57
577 655 1.228657 GCTCTTTTTCGGCGTCCTGT 61.229 55.000 6.85 0.00 0.00 4.00
579 657 0.105224 TCTTTTTCGGCGTCCTGTGA 59.895 50.000 6.85 0.00 0.00 3.58
631 709 0.872388 GCACAAACCTAGTTCCCGTG 59.128 55.000 0.00 0.00 0.00 4.94
1154 2562 9.875708 AGATTCTTGTAGGTTGATCTAGTCTAT 57.124 33.333 0.00 0.00 0.00 1.98
1251 2746 8.652290 GGTAGTATAGAAGGATTTTGTGGATCT 58.348 37.037 0.00 0.00 0.00 2.75
1299 2794 6.014584 TGTGTCTGTTGTTCATATGTACTCCT 60.015 38.462 12.92 0.00 0.00 3.69
1300 2795 7.177744 TGTGTCTGTTGTTCATATGTACTCCTA 59.822 37.037 12.92 0.00 0.00 2.94
1302 2797 6.979238 GTCTGTTGTTCATATGTACTCCTACC 59.021 42.308 12.92 0.00 0.00 3.18
1303 2798 6.097839 TCTGTTGTTCATATGTACTCCTACCC 59.902 42.308 12.92 0.00 0.00 3.69
1304 2799 5.163488 TGTTGTTCATATGTACTCCTACCCG 60.163 44.000 12.92 0.00 0.00 5.28
1353 2925 3.532542 GTGTAGCCACTCAAATACTCCC 58.467 50.000 0.00 0.00 38.61 4.30
1354 2926 3.197983 GTGTAGCCACTCAAATACTCCCT 59.802 47.826 0.00 0.00 38.61 4.20
1355 2927 3.451178 TGTAGCCACTCAAATACTCCCTC 59.549 47.826 0.00 0.00 0.00 4.30
1356 2928 1.840635 AGCCACTCAAATACTCCCTCC 59.159 52.381 0.00 0.00 0.00 4.30
1357 2929 1.473434 GCCACTCAAATACTCCCTCCG 60.473 57.143 0.00 0.00 0.00 4.63
1358 2930 1.831736 CCACTCAAATACTCCCTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
1359 2931 2.236395 CCACTCAAATACTCCCTCCGTT 59.764 50.000 0.00 0.00 0.00 4.44
1360 2932 3.522553 CACTCAAATACTCCCTCCGTTC 58.477 50.000 0.00 0.00 0.00 3.95
1361 2933 2.500504 ACTCAAATACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 0.00 3.62
1362 2934 2.766828 CTCAAATACTCCCTCCGTTCCT 59.233 50.000 0.00 0.00 0.00 3.36
1363 2935 3.958798 CTCAAATACTCCCTCCGTTCCTA 59.041 47.826 0.00 0.00 0.00 2.94
1364 2936 4.355549 TCAAATACTCCCTCCGTTCCTAA 58.644 43.478 0.00 0.00 0.00 2.69
1365 2937 4.778958 TCAAATACTCCCTCCGTTCCTAAA 59.221 41.667 0.00 0.00 0.00 1.85
1366 2938 5.427481 TCAAATACTCCCTCCGTTCCTAAAT 59.573 40.000 0.00 0.00 0.00 1.40
1367 2939 6.612456 TCAAATACTCCCTCCGTTCCTAAATA 59.388 38.462 0.00 0.00 0.00 1.40
1368 2940 7.291651 TCAAATACTCCCTCCGTTCCTAAATAT 59.708 37.037 0.00 0.00 0.00 1.28
1369 2941 8.591072 CAAATACTCCCTCCGTTCCTAAATATA 58.409 37.037 0.00 0.00 0.00 0.86
1370 2942 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
1371 2943 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1372 2944 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1373 2945 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1374 2946 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1375 2947 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1376 2948 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1377 2949 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1378 2950 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
1379 2951 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
1380 2952 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
1381 2953 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
1382 2954 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
1399 2971 4.698575 GGAGAGATTCCACTATGAACCAC 58.301 47.826 0.00 0.00 46.01 4.16
1400 2972 4.162320 GGAGAGATTCCACTATGAACCACA 59.838 45.833 0.00 0.00 46.01 4.17
1401 2973 5.163258 GGAGAGATTCCACTATGAACCACAT 60.163 44.000 0.00 0.00 46.01 3.21
1402 2974 6.042093 GGAGAGATTCCACTATGAACCACATA 59.958 42.308 0.00 0.00 46.01 2.29
1403 2975 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
1404 2976 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
1405 2977 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
1406 2978 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
1407 2979 3.383505 TCCACTATGAACCACATACGGAG 59.616 47.826 0.00 0.00 40.07 4.63
1423 2995 4.618920 ACGGAGTAAAATGAGTGAACCT 57.381 40.909 0.00 0.00 41.94 3.50
1424 2996 5.733620 ACGGAGTAAAATGAGTGAACCTA 57.266 39.130 0.00 0.00 41.94 3.08
1425 2997 6.295719 ACGGAGTAAAATGAGTGAACCTAT 57.704 37.500 0.00 0.00 41.94 2.57
1426 2998 7.414222 ACGGAGTAAAATGAGTGAACCTATA 57.586 36.000 0.00 0.00 41.94 1.31
1427 2999 7.263496 ACGGAGTAAAATGAGTGAACCTATAC 58.737 38.462 0.00 0.00 41.94 1.47
1428 3000 7.123847 ACGGAGTAAAATGAGTGAACCTATACT 59.876 37.037 0.00 0.00 41.94 2.12
1429 3001 7.648510 CGGAGTAAAATGAGTGAACCTATACTC 59.351 40.741 0.00 0.00 42.77 2.59
1430 3002 8.697292 GGAGTAAAATGAGTGAACCTATACTCT 58.303 37.037 0.00 0.00 42.86 3.24
1437 3009 8.894768 ATGAGTGAACCTATACTCTAAAATGC 57.105 34.615 0.00 0.00 42.86 3.56
1438 3010 7.847096 TGAGTGAACCTATACTCTAAAATGCA 58.153 34.615 0.00 0.00 42.86 3.96
1439 3011 8.486210 TGAGTGAACCTATACTCTAAAATGCAT 58.514 33.333 0.00 0.00 42.86 3.96
1440 3012 8.894768 AGTGAACCTATACTCTAAAATGCATC 57.105 34.615 0.00 0.00 0.00 3.91
1441 3013 8.709308 AGTGAACCTATACTCTAAAATGCATCT 58.291 33.333 0.00 0.00 0.00 2.90
1442 3014 9.982651 GTGAACCTATACTCTAAAATGCATCTA 57.017 33.333 0.00 0.00 0.00 1.98
1443 3015 9.982651 TGAACCTATACTCTAAAATGCATCTAC 57.017 33.333 0.00 0.00 0.00 2.59
1444 3016 9.982651 GAACCTATACTCTAAAATGCATCTACA 57.017 33.333 0.00 0.00 0.00 2.74
1451 3023 8.839310 ACTCTAAAATGCATCTACATACATCC 57.161 34.615 0.00 0.00 0.00 3.51
1452 3024 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
1453 3025 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
1454 3026 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
1455 3027 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
1466 3038 6.951256 CATACATCCGTATGTGGTTCATAG 57.049 41.667 3.56 0.00 46.70 2.23
1467 3039 6.455647 CATACATCCGTATGTGGTTCATAGT 58.544 40.000 3.56 0.00 46.70 2.12
1468 3040 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
1469 3041 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
1470 3042 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
1471 3043 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
1472 3044 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
1473 3045 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
1474 3046 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
1475 3047 6.201044 CCGTATGTGGTTCATAGTGAAATCTC 59.799 42.308 0.00 0.00 38.22 2.75
1476 3048 6.980978 CGTATGTGGTTCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 38.22 3.10
1477 3049 8.135529 CGTATGTGGTTCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 38.22 2.43
1478 3050 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
1479 3051 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
1480 3052 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
1481 3053 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
1482 3054 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
1483 3055 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
1484 3056 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
1485 3057 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
1503 3075 8.440771 ACAAAGACTTATATTTAGGGATGGAGG 58.559 37.037 0.00 0.00 0.00 4.30
1504 3076 7.575499 AAGACTTATATTTAGGGATGGAGGG 57.425 40.000 0.00 0.00 0.00 4.30
1505 3077 6.886637 AGACTTATATTTAGGGATGGAGGGA 58.113 40.000 0.00 0.00 0.00 4.20
1506 3078 6.962902 AGACTTATATTTAGGGATGGAGGGAG 59.037 42.308 0.00 0.00 0.00 4.30
1595 3275 1.630244 GCTGCCGTGCTTAGTCTGTG 61.630 60.000 0.00 0.00 0.00 3.66
2048 4817 2.858260 GCACATTTTCACGGTGAACCAG 60.858 50.000 22.33 16.13 35.89 4.00
2309 5894 5.467063 TGTGTGTCTCATGCATTTAAACGTA 59.533 36.000 0.00 0.00 0.00 3.57
2392 5977 1.342076 TGTGGAGAGGACGGAATAGCT 60.342 52.381 0.00 0.00 0.00 3.32
2422 6007 7.406031 TTTTACCAACAAAGTTGACCACATA 57.594 32.000 11.19 0.00 0.00 2.29
3772 7383 2.281002 CCGCCGATGCCATGATCA 60.281 61.111 0.00 0.00 0.00 2.92
3773 7384 1.893335 CCGCCGATGCCATGATCAA 60.893 57.895 0.00 0.00 0.00 2.57
3775 7386 1.656441 GCCGATGCCATGATCAACC 59.344 57.895 0.00 0.00 0.00 3.77
3776 7387 1.102809 GCCGATGCCATGATCAACCA 61.103 55.000 0.00 0.00 0.00 3.67
3777 7388 0.664761 CCGATGCCATGATCAACCAC 59.335 55.000 0.00 0.00 0.00 4.16
3778 7389 0.664761 CGATGCCATGATCAACCACC 59.335 55.000 0.00 0.00 0.00 4.61
3779 7390 0.664761 GATGCCATGATCAACCACCG 59.335 55.000 0.00 0.00 0.00 4.94
3780 7391 1.386525 ATGCCATGATCAACCACCGC 61.387 55.000 0.00 0.00 0.00 5.68
3781 7392 2.774799 GCCATGATCAACCACCGCC 61.775 63.158 0.00 0.00 0.00 6.13
3782 7393 2.472059 CCATGATCAACCACCGCCG 61.472 63.158 0.00 0.00 0.00 6.46
3783 7394 1.449423 CATGATCAACCACCGCCGA 60.449 57.895 0.00 0.00 0.00 5.54
3784 7395 0.815213 CATGATCAACCACCGCCGAT 60.815 55.000 0.00 0.00 0.00 4.18
3785 7396 0.815213 ATGATCAACCACCGCCGATG 60.815 55.000 0.00 0.00 0.00 3.84
3786 7397 2.823829 GATCAACCACCGCCGATGC 61.824 63.158 0.00 0.00 0.00 3.91
3789 7400 4.424711 AACCACCGCCGATGCCAT 62.425 61.111 0.00 0.00 0.00 4.40
3791 7402 4.854924 CCACCGCCGATGCCATGA 62.855 66.667 0.00 0.00 0.00 3.07
3792 7403 2.592574 CACCGCCGATGCCATGAT 60.593 61.111 0.00 0.00 0.00 2.45
3974 7589 0.881796 GCTGTTTGGGTAGCCAGTTC 59.118 55.000 14.38 9.11 33.89 3.01
4122 7737 0.896019 ATCCGGATGTAGGAGGCGAG 60.896 60.000 18.33 0.00 41.66 5.03
4140 7756 2.427453 CGAGATAACAGCCACCTACAGT 59.573 50.000 0.00 0.00 0.00 3.55
4227 7848 3.587923 CCTTCTCTCTTCTTCTGCACTG 58.412 50.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.070786 GTTGGTCCGGAGCAAGTCA 59.929 57.895 41.21 23.52 43.73 3.41
34 35 1.796459 GAGCTTTTAGTTTCACGGCGA 59.204 47.619 16.62 0.00 0.00 5.54
78 79 0.035056 CCCATCAAGAAGGCGAGGTT 60.035 55.000 0.00 0.00 0.00 3.50
135 136 2.047655 CGCCAAGAACCACGCCTA 60.048 61.111 0.00 0.00 0.00 3.93
336 411 2.549349 GGCGTACAGAAAAGGAAGGACA 60.549 50.000 0.00 0.00 0.00 4.02
385 460 2.279851 CGGTGCCACAGTTCGACA 60.280 61.111 0.00 0.00 0.00 4.35
461 538 2.258726 GGCGCCCCATATTCGAACC 61.259 63.158 18.11 0.00 0.00 3.62
512 589 4.426313 CCCCTGGGGTTCGCTTCC 62.426 72.222 24.54 0.00 38.25 3.46
572 650 3.691342 CCGTTCGGCCTCACAGGA 61.691 66.667 0.00 0.00 37.67 3.86
631 709 1.495878 CTCTATGTCAGCCACGCATC 58.504 55.000 0.00 0.00 0.00 3.91
702 780 1.864711 TGCTAGCGAGACAACAACAAC 59.135 47.619 10.77 0.00 0.00 3.32
703 781 2.232756 TGCTAGCGAGACAACAACAA 57.767 45.000 10.77 0.00 0.00 2.83
704 782 2.232756 TTGCTAGCGAGACAACAACA 57.767 45.000 10.77 0.00 0.00 3.33
1207 2616 6.869206 ACTACCATAGAAACCTTAGCTCAA 57.131 37.500 0.00 0.00 0.00 3.02
1299 2794 6.334102 AGCAAATTTTTCATAACACGGGTA 57.666 33.333 0.00 0.00 0.00 3.69
1300 2795 5.208463 AGCAAATTTTTCATAACACGGGT 57.792 34.783 0.00 0.00 0.00 5.28
1302 2797 9.347934 TGTTATAGCAAATTTTTCATAACACGG 57.652 29.630 16.73 0.00 35.21 4.94
1347 2919 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1348 2920 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1349 2921 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1350 2922 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1351 2923 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1352 2924 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
1353 2925 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
1354 2926 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
1355 2927 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
1356 2928 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
1375 2947 8.954344 ATGTGGTTCATAGTGGAATCTCTCCAA 61.954 40.741 0.00 0.00 44.66 3.53
1376 2948 7.548782 ATGTGGTTCATAGTGGAATCTCTCCA 61.549 42.308 0.00 0.00 42.66 3.86
1377 2949 4.162320 TGTGGTTCATAGTGGAATCTCTCC 59.838 45.833 0.00 0.00 45.64 3.71
1378 2950 5.344743 TGTGGTTCATAGTGGAATCTCTC 57.655 43.478 0.00 0.00 0.00 3.20
1379 2951 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
1380 2952 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
1381 2953 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
1382 2954 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
1383 2955 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
1384 2956 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
1385 2957 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
1386 2958 3.132289 ACTCCGTATGTGGTTCATAGTGG 59.868 47.826 0.00 0.00 39.36 4.00
1387 2959 4.386867 ACTCCGTATGTGGTTCATAGTG 57.613 45.455 0.00 0.00 39.36 2.74
1388 2960 6.534475 TTTACTCCGTATGTGGTTCATAGT 57.466 37.500 0.00 0.00 39.36 2.12
1389 2961 7.709182 TCATTTTACTCCGTATGTGGTTCATAG 59.291 37.037 0.00 0.00 39.36 2.23
1390 2962 7.557724 TCATTTTACTCCGTATGTGGTTCATA 58.442 34.615 0.00 0.00 37.91 2.15
1391 2963 6.411376 TCATTTTACTCCGTATGTGGTTCAT 58.589 36.000 0.00 0.00 40.25 2.57
1392 2964 5.795972 TCATTTTACTCCGTATGTGGTTCA 58.204 37.500 0.00 0.00 0.00 3.18
1393 2965 5.873164 ACTCATTTTACTCCGTATGTGGTTC 59.127 40.000 0.00 0.00 0.00 3.62
1394 2966 5.642063 CACTCATTTTACTCCGTATGTGGTT 59.358 40.000 0.00 0.00 0.00 3.67
1395 2967 5.046878 TCACTCATTTTACTCCGTATGTGGT 60.047 40.000 0.00 0.00 0.00 4.16
1396 2968 5.416083 TCACTCATTTTACTCCGTATGTGG 58.584 41.667 0.00 0.00 0.00 4.17
1397 2969 6.183360 GGTTCACTCATTTTACTCCGTATGTG 60.183 42.308 0.00 0.00 0.00 3.21
1398 2970 5.873164 GGTTCACTCATTTTACTCCGTATGT 59.127 40.000 0.00 0.00 0.00 2.29
1399 2971 6.106673 AGGTTCACTCATTTTACTCCGTATG 58.893 40.000 0.00 0.00 0.00 2.39
1400 2972 6.295719 AGGTTCACTCATTTTACTCCGTAT 57.704 37.500 0.00 0.00 0.00 3.06
1401 2973 5.733620 AGGTTCACTCATTTTACTCCGTA 57.266 39.130 0.00 0.00 0.00 4.02
1402 2974 4.618920 AGGTTCACTCATTTTACTCCGT 57.381 40.909 0.00 0.00 0.00 4.69
1403 2975 7.490000 AGTATAGGTTCACTCATTTTACTCCG 58.510 38.462 0.00 0.00 0.00 4.63
1404 2976 8.697292 AGAGTATAGGTTCACTCATTTTACTCC 58.303 37.037 4.70 0.00 42.99 3.85
1411 2983 9.331282 GCATTTTAGAGTATAGGTTCACTCATT 57.669 33.333 4.70 0.00 42.99 2.57
1412 2984 8.486210 TGCATTTTAGAGTATAGGTTCACTCAT 58.514 33.333 4.70 0.00 42.99 2.90
1413 2985 7.847096 TGCATTTTAGAGTATAGGTTCACTCA 58.153 34.615 4.70 0.00 42.99 3.41
1414 2986 8.894768 ATGCATTTTAGAGTATAGGTTCACTC 57.105 34.615 0.00 0.00 41.25 3.51
1415 2987 8.709308 AGATGCATTTTAGAGTATAGGTTCACT 58.291 33.333 0.00 0.00 0.00 3.41
1416 2988 8.894768 AGATGCATTTTAGAGTATAGGTTCAC 57.105 34.615 0.00 0.00 0.00 3.18
1417 2989 9.982651 GTAGATGCATTTTAGAGTATAGGTTCA 57.017 33.333 0.00 0.00 0.00 3.18
1418 2990 9.982651 TGTAGATGCATTTTAGAGTATAGGTTC 57.017 33.333 0.00 0.00 0.00 3.62
1425 2997 9.929180 GGATGTATGTAGATGCATTTTAGAGTA 57.071 33.333 0.00 0.00 35.26 2.59
1426 2998 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
1427 2999 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
1428 3000 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
1429 3001 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
1444 3016 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
1445 3017 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
1446 3018 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
1447 3019 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
1448 3020 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
1449 3021 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
1450 3022 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
1451 3023 6.980978 AGAGATTTCACTATGAACCACATACG 59.019 38.462 0.00 0.00 35.89 3.06
1452 3024 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
1453 3025 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
1454 3026 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
1455 3027 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
1456 3028 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
1457 3029 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
1458 3030 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
1459 3031 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
1477 3049 8.440771 CCTCCATCCCTAAATATAAGTCTTTGT 58.559 37.037 0.00 0.00 0.00 2.83
1478 3050 7.885399 CCCTCCATCCCTAAATATAAGTCTTTG 59.115 40.741 0.00 0.00 0.00 2.77
1479 3051 7.799583 TCCCTCCATCCCTAAATATAAGTCTTT 59.200 37.037 0.00 0.00 0.00 2.52
1480 3052 7.321530 TCCCTCCATCCCTAAATATAAGTCTT 58.678 38.462 0.00 0.00 0.00 3.01
1481 3053 6.886637 TCCCTCCATCCCTAAATATAAGTCT 58.113 40.000 0.00 0.00 0.00 3.24
1482 3054 6.731448 ACTCCCTCCATCCCTAAATATAAGTC 59.269 42.308 0.00 0.00 0.00 3.01
1483 3055 6.644882 ACTCCCTCCATCCCTAAATATAAGT 58.355 40.000 0.00 0.00 0.00 2.24
1484 3056 8.862091 ATACTCCCTCCATCCCTAAATATAAG 57.138 38.462 0.00 0.00 0.00 1.73
1486 3058 9.725206 GTAATACTCCCTCCATCCCTAAATATA 57.275 37.037 0.00 0.00 0.00 0.86
1487 3059 8.191110 TGTAATACTCCCTCCATCCCTAAATAT 58.809 37.037 0.00 0.00 0.00 1.28
1488 3060 7.550042 TGTAATACTCCCTCCATCCCTAAATA 58.450 38.462 0.00 0.00 0.00 1.40
1489 3061 6.399013 TGTAATACTCCCTCCATCCCTAAAT 58.601 40.000 0.00 0.00 0.00 1.40
1490 3062 5.795079 TGTAATACTCCCTCCATCCCTAAA 58.205 41.667 0.00 0.00 0.00 1.85
1491 3063 5.427857 TGTAATACTCCCTCCATCCCTAA 57.572 43.478 0.00 0.00 0.00 2.69
1492 3064 5.633473 ATGTAATACTCCCTCCATCCCTA 57.367 43.478 0.00 0.00 0.00 3.53
1493 3065 4.510303 ATGTAATACTCCCTCCATCCCT 57.490 45.455 0.00 0.00 0.00 4.20
1494 3066 5.342866 ACTATGTAATACTCCCTCCATCCC 58.657 45.833 0.00 0.00 0.00 3.85
1495 3067 7.363968 GCTTACTATGTAATACTCCCTCCATCC 60.364 44.444 0.00 0.00 0.00 3.51
1496 3068 7.178628 TGCTTACTATGTAATACTCCCTCCATC 59.821 40.741 0.00 0.00 0.00 3.51
1497 3069 7.016914 TGCTTACTATGTAATACTCCCTCCAT 58.983 38.462 0.00 0.00 0.00 3.41
1498 3070 6.378745 TGCTTACTATGTAATACTCCCTCCA 58.621 40.000 0.00 0.00 0.00 3.86
1499 3071 6.912951 TGCTTACTATGTAATACTCCCTCC 57.087 41.667 0.00 0.00 0.00 4.30
1500 3072 9.021807 TGTATGCTTACTATGTAATACTCCCTC 57.978 37.037 10.74 0.00 0.00 4.30
1501 3073 8.951614 TGTATGCTTACTATGTAATACTCCCT 57.048 34.615 10.74 0.00 0.00 4.20
1595 3275 0.684805 AGGATCGTCTCAGACCCCAC 60.685 60.000 0.00 0.00 0.00 4.61
1785 3696 3.489355 TGTCAACCATTGAATCTGCTGT 58.511 40.909 0.00 0.00 42.15 4.40
1790 3701 5.474876 GTCCTTTCTGTCAACCATTGAATCT 59.525 40.000 0.00 0.00 42.15 2.40
2048 4817 6.430000 TGTCTTGGTTCTAAAAGAATAGTGGC 59.570 38.462 0.00 0.00 36.50 5.01
2309 5894 2.103263 GGTTCGGATAGCATCTCCAAGT 59.897 50.000 0.00 0.00 32.72 3.16
2392 5977 8.750298 TGGTCAACTTTGTTGGTAAAATTTCTA 58.250 29.630 10.05 0.00 0.00 2.10
2422 6007 0.683973 TGCATGGGCGGTTTTTCAAT 59.316 45.000 0.00 0.00 45.35 2.57
3139 6733 6.305272 AGAACTGGTGTATCAATCATCTGT 57.695 37.500 0.00 0.00 31.34 3.41
3772 7383 4.424711 ATGGCATCGGCGGTGGTT 62.425 61.111 23.12 0.00 42.47 3.67
3775 7386 2.121564 GAATCATGGCATCGGCGGTG 62.122 60.000 17.35 17.35 42.47 4.94
3776 7387 1.893808 GAATCATGGCATCGGCGGT 60.894 57.895 7.21 0.00 42.47 5.68
3777 7388 2.620112 GGAATCATGGCATCGGCGG 61.620 63.158 7.21 0.00 42.47 6.13
3778 7389 1.598962 AGGAATCATGGCATCGGCG 60.599 57.895 0.00 0.00 42.47 6.46
3779 7390 0.820891 ACAGGAATCATGGCATCGGC 60.821 55.000 0.00 0.00 40.13 5.54
3780 7391 0.949397 CACAGGAATCATGGCATCGG 59.051 55.000 0.00 0.00 0.00 4.18
3781 7392 1.671979 ACACAGGAATCATGGCATCG 58.328 50.000 0.00 0.00 0.00 3.84
3782 7393 5.126061 ACTTTTACACAGGAATCATGGCATC 59.874 40.000 0.00 0.00 0.00 3.91
3783 7394 5.018809 ACTTTTACACAGGAATCATGGCAT 58.981 37.500 0.00 0.00 0.00 4.40
3784 7395 4.406456 ACTTTTACACAGGAATCATGGCA 58.594 39.130 0.00 0.00 0.00 4.92
3785 7396 5.391312 AACTTTTACACAGGAATCATGGC 57.609 39.130 0.00 0.00 0.00 4.40
3786 7397 5.105756 GGGAACTTTTACACAGGAATCATGG 60.106 44.000 0.00 0.00 0.00 3.66
3787 7398 5.391950 CGGGAACTTTTACACAGGAATCATG 60.392 44.000 0.00 0.00 0.00 3.07
3788 7399 4.700213 CGGGAACTTTTACACAGGAATCAT 59.300 41.667 0.00 0.00 0.00 2.45
3789 7400 4.069304 CGGGAACTTTTACACAGGAATCA 58.931 43.478 0.00 0.00 0.00 2.57
3790 7401 3.119955 GCGGGAACTTTTACACAGGAATC 60.120 47.826 0.00 0.00 0.00 2.52
3791 7402 2.817844 GCGGGAACTTTTACACAGGAAT 59.182 45.455 0.00 0.00 0.00 3.01
3792 7403 2.223745 GCGGGAACTTTTACACAGGAA 58.776 47.619 0.00 0.00 0.00 3.36
3998 7613 7.081976 AGATTGATGTTAAAAACGGCTGTTAC 58.918 34.615 12.24 6.72 37.31 2.50
4075 7690 0.303796 GCACGCGCCTTAACTTATCC 59.696 55.000 5.73 0.00 0.00 2.59
4122 7737 2.165845 ACGACTGTAGGTGGCTGTTATC 59.834 50.000 0.00 0.00 0.00 1.75
4140 7756 2.405191 CTCGAGCGCATCAGACGA 59.595 61.111 11.47 9.65 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.