Multiple sequence alignment - TraesCS5B01G260200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G260200 chr5B 100.000 2609 0 0 1 2609 442820769 442823377 0.000000e+00 4819.0
1 TraesCS5B01G260200 chr5B 83.203 1411 154 40 1043 2408 442851081 442852453 0.000000e+00 1216.0
2 TraesCS5B01G260200 chr5B 79.236 419 79 7 11 424 332640096 332640511 4.250000e-73 285.0
3 TraesCS5B01G260200 chr5B 83.630 281 44 2 13 291 421286267 421285987 1.990000e-66 263.0
4 TraesCS5B01G260200 chr5B 88.018 217 26 0 1294 1510 442857982 442858198 9.260000e-65 257.0
5 TraesCS5B01G260200 chr5B 89.655 174 15 3 2422 2594 442852640 442852811 4.370000e-53 219.0
6 TraesCS5B01G260200 chr5B 90.850 153 11 2 1370 1522 442912374 442912523 4.400000e-48 202.0
7 TraesCS5B01G260200 chr5B 79.478 268 42 9 2310 2575 289740050 289739794 7.420000e-41 178.0
8 TraesCS5B01G260200 chr5B 89.189 148 9 2 1544 1690 442912794 442912935 7.420000e-41 178.0
9 TraesCS5B01G260200 chr5B 85.484 62 9 0 1769 1830 642479122 642479183 6.030000e-07 65.8
10 TraesCS5B01G260200 chr5B 85.484 62 9 0 1769 1830 642488336 642488397 6.030000e-07 65.8
11 TraesCS5B01G260200 chr5B 85.484 62 9 0 1769 1830 642573406 642573467 6.030000e-07 65.8
12 TraesCS5B01G260200 chr5A 81.751 2044 238 59 618 2594 475596131 475598106 0.000000e+00 1583.0
13 TraesCS5B01G260200 chr5A 86.876 541 56 11 977 1510 475599361 475599893 2.240000e-165 592.0
14 TraesCS5B01G260200 chr5A 90.698 43 4 0 1753 1795 639862129 639862171 1.010000e-04 58.4
15 TraesCS5B01G260200 chr5D 90.000 720 50 9 970 1678 372454178 372454886 0.000000e+00 911.0
16 TraesCS5B01G260200 chr5D 87.525 497 22 19 501 957 372453633 372454129 2.950000e-149 538.0
17 TraesCS5B01G260200 chr5D 86.559 372 46 3 1169 1539 372507934 372508302 8.690000e-110 407.0
18 TraesCS5B01G260200 chr5D 80.814 516 89 8 2095 2604 372455247 372455758 1.880000e-106 396.0
19 TraesCS5B01G260200 chr5D 83.848 421 60 5 10 424 356334708 356334290 6.770000e-106 394.0
20 TraesCS5B01G260200 chr5D 83.333 324 52 2 10 332 291930569 291930891 5.460000e-77 298.0
21 TraesCS5B01G260200 chr5D 84.375 64 10 0 1750 1813 511589480 511589543 2.170000e-06 63.9
22 TraesCS5B01G260200 chr5D 86.792 53 7 0 2180 2232 163482913 163482861 2.800000e-05 60.2
23 TraesCS5B01G260200 chr5D 87.500 48 6 0 1750 1797 511524626 511524673 3.630000e-04 56.5
24 TraesCS5B01G260200 chr2D 85.669 314 41 4 10 322 284574522 284574212 6.960000e-86 327.0
25 TraesCS5B01G260200 chr2A 85.032 314 44 3 10 322 333732267 333732578 1.510000e-82 316.0
26 TraesCS5B01G260200 chr2A 80.428 327 58 6 10 332 769061303 769061627 7.210000e-61 244.0
27 TraesCS5B01G260200 chr4A 74.194 341 64 17 10 330 729171791 729171455 1.270000e-23 121.0
28 TraesCS5B01G260200 chr3B 76.606 218 47 4 108 321 43614029 43614246 1.640000e-22 117.0
29 TraesCS5B01G260200 chrUn 84.034 119 10 7 209 327 290406225 290406334 3.550000e-19 106.0
30 TraesCS5B01G260200 chrUn 84.034 119 10 7 209 327 291563265 291563156 3.550000e-19 106.0
31 TraesCS5B01G260200 chr1B 83.158 95 16 0 330 424 17491855 17491949 1.290000e-13 87.9
32 TraesCS5B01G260200 chr1B 81.250 96 16 2 330 424 17445527 17445621 2.780000e-10 76.8
33 TraesCS5B01G260200 chr1B 82.353 85 15 0 330 414 17411914 17411998 1.000000e-09 75.0
34 TraesCS5B01G260200 chr1B 82.353 85 15 0 330 414 17420440 17420524 1.000000e-09 75.0
35 TraesCS5B01G260200 chr1B 81.053 95 17 1 330 424 17431823 17431916 1.000000e-09 75.0
36 TraesCS5B01G260200 chr1B 82.353 85 15 0 330 414 17434020 17434104 1.000000e-09 75.0
37 TraesCS5B01G260200 chr1B 82.143 84 15 0 330 413 17511891 17511974 3.600000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G260200 chr5B 442820769 442823377 2608 False 4819.0 4819 100.0000 1 2609 1 chr5B.!!$F2 2608
1 TraesCS5B01G260200 chr5B 442851081 442852811 1730 False 717.5 1216 86.4290 1043 2594 2 chr5B.!!$F7 1551
2 TraesCS5B01G260200 chr5A 475596131 475599893 3762 False 1087.5 1583 84.3135 618 2594 2 chr5A.!!$F2 1976
3 TraesCS5B01G260200 chr5D 372453633 372455758 2125 False 615.0 911 86.1130 501 2604 3 chr5D.!!$F5 2103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.033504 GAGTGAACCGCCTGAGAACA 59.966 55.0 0.00 0.0 0.00 3.18 F
96 97 0.036010 AGGCACTACTTGAAGCGCAT 60.036 50.0 11.47 0.0 36.02 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1063 1149 1.547820 CAGAAGCTCTCTGTGCCTACA 59.452 52.381 14.26 0.0 45.76 2.74 R
2023 2185 0.109532 TGCAGGAAAACGGACATCCA 59.890 50.000 0.00 0.0 35.62 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.828933 GAGTGAACCGCCTGAGAAC 58.171 57.895 0.00 0.00 0.00 3.01
19 20 0.033504 GAGTGAACCGCCTGAGAACA 59.966 55.000 0.00 0.00 0.00 3.18
20 21 0.687354 AGTGAACCGCCTGAGAACAT 59.313 50.000 0.00 0.00 0.00 2.71
21 22 1.072331 AGTGAACCGCCTGAGAACATT 59.928 47.619 0.00 0.00 0.00 2.71
22 23 1.464997 GTGAACCGCCTGAGAACATTC 59.535 52.381 0.00 0.00 0.00 2.67
23 24 0.721718 GAACCGCCTGAGAACATTCG 59.278 55.000 0.00 0.00 0.00 3.34
24 25 0.673644 AACCGCCTGAGAACATTCGG 60.674 55.000 0.00 0.00 42.28 4.30
25 26 1.079127 CCGCCTGAGAACATTCGGT 60.079 57.895 0.00 0.00 36.65 4.69
26 27 0.174845 CCGCCTGAGAACATTCGGTA 59.825 55.000 0.00 0.00 36.65 4.02
27 28 1.278238 CGCCTGAGAACATTCGGTAC 58.722 55.000 0.00 0.00 0.00 3.34
28 29 1.403647 CGCCTGAGAACATTCGGTACA 60.404 52.381 0.00 0.00 0.00 2.90
29 30 2.738643 CGCCTGAGAACATTCGGTACAT 60.739 50.000 0.00 0.00 0.00 2.29
30 31 3.270877 GCCTGAGAACATTCGGTACATT 58.729 45.455 0.00 0.00 0.00 2.71
31 32 4.439057 GCCTGAGAACATTCGGTACATTA 58.561 43.478 0.00 0.00 0.00 1.90
32 33 4.270325 GCCTGAGAACATTCGGTACATTAC 59.730 45.833 0.00 0.00 0.00 1.89
33 34 4.809426 CCTGAGAACATTCGGTACATTACC 59.191 45.833 0.00 0.00 45.52 2.85
45 46 2.656947 ACATTACCAATGGGGATCCG 57.343 50.000 5.45 0.00 43.21 4.18
46 47 1.144913 ACATTACCAATGGGGATCCGG 59.855 52.381 5.45 3.14 43.21 5.14
47 48 1.144913 CATTACCAATGGGGATCCGGT 59.855 52.381 12.30 12.30 41.15 5.28
48 49 1.300927 TTACCAATGGGGATCCGGTT 58.699 50.000 12.82 0.00 41.15 4.44
49 50 0.548989 TACCAATGGGGATCCGGTTG 59.451 55.000 12.82 12.82 41.15 3.77
50 51 1.211567 ACCAATGGGGATCCGGTTGA 61.212 55.000 18.58 0.00 41.15 3.18
51 52 0.466189 CCAATGGGGATCCGGTTGAG 60.466 60.000 18.58 8.98 40.01 3.02
52 53 1.103398 CAATGGGGATCCGGTTGAGC 61.103 60.000 14.01 0.00 34.91 4.26
53 54 2.608970 AATGGGGATCCGGTTGAGCG 62.609 60.000 5.45 0.00 35.24 5.03
54 55 3.467226 GGGGATCCGGTTGAGCGA 61.467 66.667 5.45 0.00 0.00 4.93
55 56 2.107141 GGGATCCGGTTGAGCGAG 59.893 66.667 5.45 0.00 0.00 5.03
56 57 2.423898 GGGATCCGGTTGAGCGAGA 61.424 63.158 5.45 0.67 0.00 4.04
57 58 1.066587 GGATCCGGTTGAGCGAGAG 59.933 63.158 0.00 0.00 0.00 3.20
73 74 3.706698 CGAGAGCACGATCCAAATAAGA 58.293 45.455 0.00 0.00 35.09 2.10
74 75 4.302455 CGAGAGCACGATCCAAATAAGAT 58.698 43.478 0.00 0.00 35.09 2.40
75 76 4.747108 CGAGAGCACGATCCAAATAAGATT 59.253 41.667 0.00 0.00 35.09 2.40
76 77 5.107683 CGAGAGCACGATCCAAATAAGATTC 60.108 44.000 0.00 0.00 35.09 2.52
77 78 5.674525 AGAGCACGATCCAAATAAGATTCA 58.325 37.500 0.00 0.00 0.00 2.57
78 79 5.757320 AGAGCACGATCCAAATAAGATTCAG 59.243 40.000 0.00 0.00 0.00 3.02
79 80 4.818546 AGCACGATCCAAATAAGATTCAGG 59.181 41.667 0.00 0.00 0.00 3.86
80 81 4.555511 GCACGATCCAAATAAGATTCAGGC 60.556 45.833 0.00 0.00 0.00 4.85
81 82 4.576053 CACGATCCAAATAAGATTCAGGCA 59.424 41.667 0.00 0.00 0.00 4.75
82 83 4.576463 ACGATCCAAATAAGATTCAGGCAC 59.424 41.667 0.00 0.00 0.00 5.01
83 84 4.818546 CGATCCAAATAAGATTCAGGCACT 59.181 41.667 0.00 0.00 43.88 4.40
84 85 5.991606 CGATCCAAATAAGATTCAGGCACTA 59.008 40.000 0.00 0.00 36.02 2.74
85 86 6.073548 CGATCCAAATAAGATTCAGGCACTAC 60.074 42.308 0.00 0.00 36.02 2.73
86 87 6.313519 TCCAAATAAGATTCAGGCACTACT 57.686 37.500 0.00 0.00 36.02 2.57
87 88 6.721318 TCCAAATAAGATTCAGGCACTACTT 58.279 36.000 0.00 0.00 36.02 2.24
88 89 6.599244 TCCAAATAAGATTCAGGCACTACTTG 59.401 38.462 0.00 0.00 36.02 3.16
89 90 6.599244 CCAAATAAGATTCAGGCACTACTTGA 59.401 38.462 0.00 0.00 36.02 3.02
90 91 7.121168 CCAAATAAGATTCAGGCACTACTTGAA 59.879 37.037 0.00 0.00 36.02 2.69
91 92 7.856145 AATAAGATTCAGGCACTACTTGAAG 57.144 36.000 0.00 0.00 36.02 3.02
92 93 3.604582 AGATTCAGGCACTACTTGAAGC 58.395 45.455 0.00 0.00 36.02 3.86
93 94 1.795768 TTCAGGCACTACTTGAAGCG 58.204 50.000 0.00 0.00 36.02 4.68
94 95 0.670546 TCAGGCACTACTTGAAGCGC 60.671 55.000 0.00 0.00 36.02 5.92
95 96 0.950555 CAGGCACTACTTGAAGCGCA 60.951 55.000 11.47 0.00 36.02 6.09
96 97 0.036010 AGGCACTACTTGAAGCGCAT 60.036 50.000 11.47 0.00 36.02 4.73
97 98 0.375106 GGCACTACTTGAAGCGCATC 59.625 55.000 11.47 8.28 0.00 3.91
98 99 0.375106 GCACTACTTGAAGCGCATCC 59.625 55.000 11.47 0.00 0.00 3.51
99 100 0.647410 CACTACTTGAAGCGCATCCG 59.353 55.000 11.47 3.63 37.57 4.18
100 101 0.530744 ACTACTTGAAGCGCATCCGA 59.469 50.000 11.47 0.00 36.29 4.55
101 102 1.203928 CTACTTGAAGCGCATCCGAG 58.796 55.000 11.47 10.79 36.29 4.63
102 103 0.179111 TACTTGAAGCGCATCCGAGG 60.179 55.000 11.47 0.00 36.29 4.63
103 104 1.153568 CTTGAAGCGCATCCGAGGA 60.154 57.895 11.47 0.00 36.29 3.71
104 105 0.531532 CTTGAAGCGCATCCGAGGAT 60.532 55.000 11.47 0.00 36.29 3.24
105 106 0.530650 TTGAAGCGCATCCGAGGATC 60.531 55.000 11.47 0.00 36.29 3.36
122 123 6.150396 GAGGATCGAGAACCTAGAATTTCA 57.850 41.667 1.74 0.00 36.57 2.69
123 124 6.739331 AGGATCGAGAACCTAGAATTTCAT 57.261 37.500 0.00 0.00 34.47 2.57
124 125 7.841282 AGGATCGAGAACCTAGAATTTCATA 57.159 36.000 0.00 0.00 34.47 2.15
125 126 8.251383 AGGATCGAGAACCTAGAATTTCATAA 57.749 34.615 0.00 0.00 34.47 1.90
126 127 8.145122 AGGATCGAGAACCTAGAATTTCATAAC 58.855 37.037 0.00 0.00 34.47 1.89
127 128 7.385478 GGATCGAGAACCTAGAATTTCATAACC 59.615 40.741 0.00 0.00 0.00 2.85
128 129 7.177832 TCGAGAACCTAGAATTTCATAACCA 57.822 36.000 0.00 0.00 0.00 3.67
129 130 7.265673 TCGAGAACCTAGAATTTCATAACCAG 58.734 38.462 0.00 0.00 0.00 4.00
130 131 6.018669 CGAGAACCTAGAATTTCATAACCAGC 60.019 42.308 0.00 0.00 0.00 4.85
131 132 6.963322 AGAACCTAGAATTTCATAACCAGCT 58.037 36.000 0.00 0.00 0.00 4.24
132 133 7.051000 AGAACCTAGAATTTCATAACCAGCTC 58.949 38.462 0.00 0.00 0.00 4.09
133 134 5.685728 ACCTAGAATTTCATAACCAGCTCC 58.314 41.667 0.00 0.00 0.00 4.70
134 135 5.191722 ACCTAGAATTTCATAACCAGCTCCA 59.808 40.000 0.00 0.00 0.00 3.86
135 136 6.122277 CCTAGAATTTCATAACCAGCTCCAA 58.878 40.000 0.00 0.00 0.00 3.53
136 137 5.904362 AGAATTTCATAACCAGCTCCAAC 57.096 39.130 0.00 0.00 0.00 3.77
137 138 5.324409 AGAATTTCATAACCAGCTCCAACA 58.676 37.500 0.00 0.00 0.00 3.33
138 139 5.954150 AGAATTTCATAACCAGCTCCAACAT 59.046 36.000 0.00 0.00 0.00 2.71
139 140 5.587388 ATTTCATAACCAGCTCCAACATG 57.413 39.130 0.00 0.00 0.00 3.21
140 141 3.998913 TCATAACCAGCTCCAACATGA 57.001 42.857 0.00 0.00 0.00 3.07
141 142 4.508551 TCATAACCAGCTCCAACATGAT 57.491 40.909 0.00 0.00 0.00 2.45
142 143 4.858850 TCATAACCAGCTCCAACATGATT 58.141 39.130 0.00 0.00 0.00 2.57
143 144 5.263599 TCATAACCAGCTCCAACATGATTT 58.736 37.500 0.00 0.00 0.00 2.17
144 145 3.947910 AACCAGCTCCAACATGATTTG 57.052 42.857 0.00 0.00 0.00 2.32
145 146 2.880443 ACCAGCTCCAACATGATTTGT 58.120 42.857 0.00 0.00 41.53 2.83
147 148 4.406456 ACCAGCTCCAACATGATTTGTTA 58.594 39.130 0.00 0.00 46.90 2.41
148 149 4.832266 ACCAGCTCCAACATGATTTGTTAA 59.168 37.500 0.00 0.00 46.90 2.01
149 150 5.047802 ACCAGCTCCAACATGATTTGTTAAG 60.048 40.000 0.00 0.00 46.90 1.85
150 151 4.860907 CAGCTCCAACATGATTTGTTAAGC 59.139 41.667 0.00 13.13 46.90 3.09
151 152 4.523943 AGCTCCAACATGATTTGTTAAGCA 59.476 37.500 18.92 0.00 46.90 3.91
152 153 5.186409 AGCTCCAACATGATTTGTTAAGCAT 59.814 36.000 18.92 1.27 46.90 3.79
153 154 5.517770 GCTCCAACATGATTTGTTAAGCATC 59.482 40.000 0.00 0.00 46.90 3.91
154 155 6.587206 TCCAACATGATTTGTTAAGCATCA 57.413 33.333 0.00 0.00 46.90 3.07
155 156 6.990798 TCCAACATGATTTGTTAAGCATCAA 58.009 32.000 0.00 0.00 46.90 2.57
156 157 7.613585 TCCAACATGATTTGTTAAGCATCAAT 58.386 30.769 0.00 0.00 46.90 2.57
157 158 7.546316 TCCAACATGATTTGTTAAGCATCAATG 59.454 33.333 0.00 0.00 46.90 2.82
158 159 7.546316 CCAACATGATTTGTTAAGCATCAATGA 59.454 33.333 0.00 0.00 46.90 2.57
159 160 8.377681 CAACATGATTTGTTAAGCATCAATGAC 58.622 33.333 0.00 0.00 46.90 3.06
160 161 7.604549 ACATGATTTGTTAAGCATCAATGACA 58.395 30.769 0.00 0.00 38.26 3.58
161 162 8.255206 ACATGATTTGTTAAGCATCAATGACAT 58.745 29.630 0.00 0.00 38.26 3.06
162 163 8.752254 CATGATTTGTTAAGCATCAATGACATC 58.248 33.333 0.00 0.00 38.26 3.06
163 164 8.058667 TGATTTGTTAAGCATCAATGACATCT 57.941 30.769 0.00 0.00 0.00 2.90
164 165 8.186163 TGATTTGTTAAGCATCAATGACATCTC 58.814 33.333 0.00 0.00 0.00 2.75
165 166 6.441093 TTGTTAAGCATCAATGACATCTCC 57.559 37.500 0.00 0.00 0.00 3.71
166 167 5.499313 TGTTAAGCATCAATGACATCTCCA 58.501 37.500 0.00 0.00 0.00 3.86
167 168 6.124340 TGTTAAGCATCAATGACATCTCCAT 58.876 36.000 0.00 0.00 0.00 3.41
168 169 7.281841 TGTTAAGCATCAATGACATCTCCATA 58.718 34.615 0.00 0.00 0.00 2.74
169 170 7.774625 TGTTAAGCATCAATGACATCTCCATAA 59.225 33.333 0.00 0.00 0.00 1.90
170 171 6.630444 AAGCATCAATGACATCTCCATAAC 57.370 37.500 0.00 0.00 0.00 1.89
171 172 5.687780 AGCATCAATGACATCTCCATAACA 58.312 37.500 0.00 0.00 0.00 2.41
172 173 5.530171 AGCATCAATGACATCTCCATAACAC 59.470 40.000 0.00 0.00 0.00 3.32
173 174 5.530171 GCATCAATGACATCTCCATAACACT 59.470 40.000 0.00 0.00 0.00 3.55
174 175 6.039047 GCATCAATGACATCTCCATAACACTT 59.961 38.462 0.00 0.00 0.00 3.16
175 176 7.637229 CATCAATGACATCTCCATAACACTTC 58.363 38.462 0.00 0.00 0.00 3.01
176 177 5.812127 TCAATGACATCTCCATAACACTTCG 59.188 40.000 0.00 0.00 0.00 3.79
177 178 4.801330 TGACATCTCCATAACACTTCGT 57.199 40.909 0.00 0.00 0.00 3.85
178 179 5.907866 TGACATCTCCATAACACTTCGTA 57.092 39.130 0.00 0.00 0.00 3.43
179 180 5.891451 TGACATCTCCATAACACTTCGTAG 58.109 41.667 0.00 0.00 0.00 3.51
180 181 5.417894 TGACATCTCCATAACACTTCGTAGT 59.582 40.000 0.00 0.00 34.00 2.73
181 182 6.071560 TGACATCTCCATAACACTTCGTAGTT 60.072 38.462 0.00 0.00 30.26 2.24
182 183 6.100004 ACATCTCCATAACACTTCGTAGTTG 58.900 40.000 0.00 0.00 30.26 3.16
183 184 5.717078 TCTCCATAACACTTCGTAGTTGT 57.283 39.130 0.00 0.00 30.26 3.32
184 185 5.466819 TCTCCATAACACTTCGTAGTTGTG 58.533 41.667 0.00 0.00 36.84 3.33
185 186 5.242171 TCTCCATAACACTTCGTAGTTGTGA 59.758 40.000 0.00 0.00 38.59 3.58
186 187 6.032956 TCCATAACACTTCGTAGTTGTGAT 57.967 37.500 0.00 0.00 38.59 3.06
187 188 6.460781 TCCATAACACTTCGTAGTTGTGATT 58.539 36.000 0.00 0.00 38.59 2.57
188 189 6.932400 TCCATAACACTTCGTAGTTGTGATTT 59.068 34.615 0.00 0.00 38.59 2.17
189 190 7.442969 TCCATAACACTTCGTAGTTGTGATTTT 59.557 33.333 0.00 0.00 38.59 1.82
190 191 8.714179 CCATAACACTTCGTAGTTGTGATTTTA 58.286 33.333 0.00 0.00 38.59 1.52
193 194 7.956420 ACACTTCGTAGTTGTGATTTTATCA 57.044 32.000 0.00 0.00 36.25 2.15
194 195 8.547967 ACACTTCGTAGTTGTGATTTTATCAT 57.452 30.769 0.00 0.00 35.39 2.45
195 196 8.656849 ACACTTCGTAGTTGTGATTTTATCATC 58.343 33.333 0.00 0.00 35.39 2.92
196 197 8.116753 CACTTCGTAGTTGTGATTTTATCATCC 58.883 37.037 0.00 0.00 35.39 3.51
197 198 8.041323 ACTTCGTAGTTGTGATTTTATCATCCT 58.959 33.333 0.00 0.00 42.04 3.24
198 199 9.529325 CTTCGTAGTTGTGATTTTATCATCCTA 57.471 33.333 0.00 0.00 42.04 2.94
200 201 9.476202 TCGTAGTTGTGATTTTATCATCCTATG 57.524 33.333 0.00 0.00 42.04 2.23
201 202 9.261180 CGTAGTTGTGATTTTATCATCCTATGT 57.739 33.333 0.00 0.00 42.04 2.29
220 221 9.045223 TCCTATGTACTTCATTTGAATCATTCG 57.955 33.333 0.00 0.00 37.91 3.34
221 222 7.800380 CCTATGTACTTCATTTGAATCATTCGC 59.200 37.037 0.00 0.00 37.91 4.70
222 223 6.741992 TGTACTTCATTTGAATCATTCGCT 57.258 33.333 0.00 0.00 33.01 4.93
223 224 6.545508 TGTACTTCATTTGAATCATTCGCTG 58.454 36.000 0.00 0.00 33.01 5.18
224 225 5.633830 ACTTCATTTGAATCATTCGCTGT 57.366 34.783 0.00 0.00 33.01 4.40
225 226 5.396484 ACTTCATTTGAATCATTCGCTGTG 58.604 37.500 0.00 0.00 33.01 3.66
226 227 5.048504 ACTTCATTTGAATCATTCGCTGTGT 60.049 36.000 0.00 0.00 33.01 3.72
227 228 5.375417 TCATTTGAATCATTCGCTGTGTT 57.625 34.783 0.00 0.00 0.00 3.32
228 229 5.771469 TCATTTGAATCATTCGCTGTGTTT 58.229 33.333 0.00 0.00 0.00 2.83
229 230 5.630264 TCATTTGAATCATTCGCTGTGTTTG 59.370 36.000 0.00 0.00 0.00 2.93
230 231 4.827304 TTGAATCATTCGCTGTGTTTGA 57.173 36.364 0.00 0.00 0.00 2.69
231 232 4.827304 TGAATCATTCGCTGTGTTTGAA 57.173 36.364 0.00 0.00 0.00 2.69
232 233 5.375417 TGAATCATTCGCTGTGTTTGAAT 57.625 34.783 0.00 0.00 32.77 2.57
233 234 5.771469 TGAATCATTCGCTGTGTTTGAATT 58.229 33.333 0.00 0.00 30.23 2.17
234 235 6.215121 TGAATCATTCGCTGTGTTTGAATTT 58.785 32.000 0.00 0.00 30.23 1.82
235 236 6.144241 TGAATCATTCGCTGTGTTTGAATTTG 59.856 34.615 0.00 0.00 30.23 2.32
236 237 5.180367 TCATTCGCTGTGTTTGAATTTGA 57.820 34.783 0.00 0.00 30.23 2.69
237 238 5.586339 TCATTCGCTGTGTTTGAATTTGAA 58.414 33.333 0.00 0.00 30.23 2.69
238 239 6.215121 TCATTCGCTGTGTTTGAATTTGAAT 58.785 32.000 0.00 0.00 30.23 2.57
239 240 7.366513 TCATTCGCTGTGTTTGAATTTGAATA 58.633 30.769 0.00 0.00 30.23 1.75
240 241 7.864882 TCATTCGCTGTGTTTGAATTTGAATAA 59.135 29.630 0.00 0.00 30.23 1.40
241 242 8.649841 CATTCGCTGTGTTTGAATTTGAATAAT 58.350 29.630 0.00 0.00 30.23 1.28
242 243 8.586570 TTCGCTGTGTTTGAATTTGAATAATT 57.413 26.923 0.00 0.00 0.00 1.40
243 244 8.586570 TCGCTGTGTTTGAATTTGAATAATTT 57.413 26.923 0.00 0.00 0.00 1.82
244 245 9.684448 TCGCTGTGTTTGAATTTGAATAATTTA 57.316 25.926 0.00 0.00 0.00 1.40
349 350 5.813080 ATAGTCAAGTTTATTTCGGTGGC 57.187 39.130 0.00 0.00 0.00 5.01
350 351 2.817844 AGTCAAGTTTATTTCGGTGGCC 59.182 45.455 0.00 0.00 0.00 5.36
364 365 3.378911 GGTGGCCGAAAATGAAAAGAA 57.621 42.857 0.00 0.00 0.00 2.52
365 366 3.925379 GGTGGCCGAAAATGAAAAGAAT 58.075 40.909 0.00 0.00 0.00 2.40
366 367 4.314961 GGTGGCCGAAAATGAAAAGAATT 58.685 39.130 0.00 0.00 0.00 2.17
367 368 4.754618 GGTGGCCGAAAATGAAAAGAATTT 59.245 37.500 0.00 0.00 42.41 1.82
368 369 5.334028 GGTGGCCGAAAATGAAAAGAATTTG 60.334 40.000 0.00 0.00 39.02 2.32
369 370 5.465056 GTGGCCGAAAATGAAAAGAATTTGA 59.535 36.000 0.00 0.00 39.02 2.69
370 371 5.465056 TGGCCGAAAATGAAAAGAATTTGAC 59.535 36.000 0.00 0.00 39.02 3.18
371 372 5.465056 GGCCGAAAATGAAAAGAATTTGACA 59.535 36.000 0.00 0.00 39.02 3.58
372 373 6.018343 GGCCGAAAATGAAAAGAATTTGACAA 60.018 34.615 0.00 0.00 39.02 3.18
373 374 7.405769 GCCGAAAATGAAAAGAATTTGACAAA 58.594 30.769 2.48 2.48 39.02 2.83
374 375 7.907563 GCCGAAAATGAAAAGAATTTGACAAAA 59.092 29.630 4.41 0.00 39.02 2.44
375 376 9.766277 CCGAAAATGAAAAGAATTTGACAAAAA 57.234 25.926 4.41 0.00 39.02 1.94
390 391 8.553459 TTTGACAAAAATAAAAACTTGCTCCA 57.447 26.923 0.00 0.00 0.00 3.86
391 392 8.729805 TTGACAAAAATAAAAACTTGCTCCAT 57.270 26.923 0.00 0.00 0.00 3.41
392 393 8.729805 TGACAAAAATAAAAACTTGCTCCATT 57.270 26.923 0.00 0.00 0.00 3.16
393 394 9.823647 TGACAAAAATAAAAACTTGCTCCATTA 57.176 25.926 0.00 0.00 0.00 1.90
406 407 9.914131 AACTTGCTCCATTAAATTTAAGAGTTC 57.086 29.630 20.08 10.76 0.00 3.01
407 408 8.237267 ACTTGCTCCATTAAATTTAAGAGTTCG 58.763 33.333 20.08 13.85 0.00 3.95
408 409 6.551736 TGCTCCATTAAATTTAAGAGTTCGC 58.448 36.000 20.08 15.22 0.00 4.70
409 410 5.971792 GCTCCATTAAATTTAAGAGTTCGCC 59.028 40.000 20.08 7.19 0.00 5.54
410 411 6.183360 GCTCCATTAAATTTAAGAGTTCGCCT 60.183 38.462 20.08 0.91 0.00 5.52
411 412 7.012044 GCTCCATTAAATTTAAGAGTTCGCCTA 59.988 37.037 20.08 0.00 0.00 3.93
412 413 8.433421 TCCATTAAATTTAAGAGTTCGCCTAG 57.567 34.615 15.45 0.00 0.00 3.02
413 414 8.262227 TCCATTAAATTTAAGAGTTCGCCTAGA 58.738 33.333 15.45 0.62 0.00 2.43
414 415 9.057089 CCATTAAATTTAAGAGTTCGCCTAGAT 57.943 33.333 15.45 0.00 0.00 1.98
416 417 8.658499 TTAAATTTAAGAGTTCGCCTAGATCC 57.342 34.615 6.54 0.00 0.00 3.36
417 418 3.984508 TTAAGAGTTCGCCTAGATCCG 57.015 47.619 0.00 0.00 0.00 4.18
418 419 2.054232 AAGAGTTCGCCTAGATCCGA 57.946 50.000 0.00 0.00 0.00 4.55
419 420 1.310904 AGAGTTCGCCTAGATCCGAC 58.689 55.000 0.00 0.00 32.60 4.79
420 421 0.311477 GAGTTCGCCTAGATCCGACC 59.689 60.000 0.00 0.00 32.60 4.79
421 422 0.395311 AGTTCGCCTAGATCCGACCA 60.395 55.000 0.00 0.00 32.60 4.02
422 423 0.458669 GTTCGCCTAGATCCGACCAA 59.541 55.000 0.00 0.00 32.60 3.67
423 424 1.134907 GTTCGCCTAGATCCGACCAAA 60.135 52.381 0.00 0.00 32.60 3.28
424 425 1.410004 TCGCCTAGATCCGACCAAAT 58.590 50.000 0.00 0.00 0.00 2.32
425 426 1.760613 TCGCCTAGATCCGACCAAATT 59.239 47.619 0.00 0.00 0.00 1.82
426 427 2.169769 TCGCCTAGATCCGACCAAATTT 59.830 45.455 0.00 0.00 0.00 1.82
427 428 3.385433 TCGCCTAGATCCGACCAAATTTA 59.615 43.478 0.00 0.00 0.00 1.40
428 429 3.493503 CGCCTAGATCCGACCAAATTTAC 59.506 47.826 0.00 0.00 0.00 2.01
429 430 4.704965 GCCTAGATCCGACCAAATTTACT 58.295 43.478 0.00 0.00 0.00 2.24
430 431 4.750598 GCCTAGATCCGACCAAATTTACTC 59.249 45.833 0.00 0.00 0.00 2.59
431 432 5.298347 CCTAGATCCGACCAAATTTACTCC 58.702 45.833 0.00 0.00 0.00 3.85
432 433 4.837093 AGATCCGACCAAATTTACTCCA 57.163 40.909 0.00 0.00 0.00 3.86
433 434 4.514401 AGATCCGACCAAATTTACTCCAC 58.486 43.478 0.00 0.00 0.00 4.02
434 435 4.225267 AGATCCGACCAAATTTACTCCACT 59.775 41.667 0.00 0.00 0.00 4.00
435 436 5.424252 AGATCCGACCAAATTTACTCCACTA 59.576 40.000 0.00 0.00 0.00 2.74
436 437 5.687166 TCCGACCAAATTTACTCCACTAT 57.313 39.130 0.00 0.00 0.00 2.12
437 438 6.795144 TCCGACCAAATTTACTCCACTATA 57.205 37.500 0.00 0.00 0.00 1.31
438 439 6.812998 TCCGACCAAATTTACTCCACTATAG 58.187 40.000 0.00 0.00 0.00 1.31
439 440 5.465724 CCGACCAAATTTACTCCACTATAGC 59.534 44.000 0.00 0.00 0.00 2.97
440 441 6.281405 CGACCAAATTTACTCCACTATAGCT 58.719 40.000 0.00 0.00 0.00 3.32
441 442 7.431249 CGACCAAATTTACTCCACTATAGCTA 58.569 38.462 0.00 0.00 0.00 3.32
442 443 7.924412 CGACCAAATTTACTCCACTATAGCTAA 59.076 37.037 0.00 0.00 0.00 3.09
443 444 8.959705 ACCAAATTTACTCCACTATAGCTAAC 57.040 34.615 0.00 0.00 0.00 2.34
444 445 8.769359 ACCAAATTTACTCCACTATAGCTAACT 58.231 33.333 0.00 0.00 0.00 2.24
445 446 9.262358 CCAAATTTACTCCACTATAGCTAACTC 57.738 37.037 0.00 0.00 0.00 3.01
450 451 9.863650 TTTACTCCACTATAGCTAACTCTATGT 57.136 33.333 0.00 0.00 32.07 2.29
451 452 9.863650 TTACTCCACTATAGCTAACTCTATGTT 57.136 33.333 0.00 0.00 42.31 2.71
452 453 8.770010 ACTCCACTATAGCTAACTCTATGTTT 57.230 34.615 0.00 0.00 39.89 2.83
453 454 8.852135 ACTCCACTATAGCTAACTCTATGTTTC 58.148 37.037 0.00 0.00 39.89 2.78
454 455 8.179509 TCCACTATAGCTAACTCTATGTTTCC 57.820 38.462 0.00 0.00 39.89 3.13
455 456 8.005388 TCCACTATAGCTAACTCTATGTTTCCT 58.995 37.037 0.00 0.00 39.89 3.36
456 457 8.301002 CCACTATAGCTAACTCTATGTTTCCTC 58.699 40.741 0.00 0.00 39.89 3.71
457 458 8.301002 CACTATAGCTAACTCTATGTTTCCTCC 58.699 40.741 0.00 0.00 39.89 4.30
458 459 8.228905 ACTATAGCTAACTCTATGTTTCCTCCT 58.771 37.037 0.00 0.00 39.89 3.69
459 460 5.862678 AGCTAACTCTATGTTTCCTCCTC 57.137 43.478 0.00 0.00 39.89 3.71
460 461 5.524535 AGCTAACTCTATGTTTCCTCCTCT 58.475 41.667 0.00 0.00 39.89 3.69
461 462 6.674573 AGCTAACTCTATGTTTCCTCCTCTA 58.325 40.000 0.00 0.00 39.89 2.43
462 463 7.302184 AGCTAACTCTATGTTTCCTCCTCTAT 58.698 38.462 0.00 0.00 39.89 1.98
463 464 7.232534 AGCTAACTCTATGTTTCCTCCTCTATG 59.767 40.741 0.00 0.00 39.89 2.23
464 465 5.799827 ACTCTATGTTTCCTCCTCTATGC 57.200 43.478 0.00 0.00 0.00 3.14
465 466 5.463154 ACTCTATGTTTCCTCCTCTATGCT 58.537 41.667 0.00 0.00 0.00 3.79
466 467 5.902431 ACTCTATGTTTCCTCCTCTATGCTT 59.098 40.000 0.00 0.00 0.00 3.91
467 468 6.385467 ACTCTATGTTTCCTCCTCTATGCTTT 59.615 38.462 0.00 0.00 0.00 3.51
468 469 7.092668 ACTCTATGTTTCCTCCTCTATGCTTTT 60.093 37.037 0.00 0.00 0.00 2.27
469 470 8.319057 TCTATGTTTCCTCCTCTATGCTTTTA 57.681 34.615 0.00 0.00 0.00 1.52
470 471 8.424918 TCTATGTTTCCTCCTCTATGCTTTTAG 58.575 37.037 0.00 0.00 0.00 1.85
471 472 5.745227 TGTTTCCTCCTCTATGCTTTTAGG 58.255 41.667 0.00 0.00 0.00 2.69
472 473 5.126779 GTTTCCTCCTCTATGCTTTTAGGG 58.873 45.833 0.00 0.00 0.00 3.53
473 474 4.280789 TCCTCCTCTATGCTTTTAGGGA 57.719 45.455 0.00 0.00 0.00 4.20
474 475 4.631234 TCCTCCTCTATGCTTTTAGGGAA 58.369 43.478 0.00 0.00 0.00 3.97
475 476 5.227593 TCCTCCTCTATGCTTTTAGGGAAT 58.772 41.667 0.00 0.00 0.00 3.01
476 477 5.308237 TCCTCCTCTATGCTTTTAGGGAATC 59.692 44.000 0.00 0.00 0.00 2.52
477 478 5.215252 TCCTCTATGCTTTTAGGGAATCG 57.785 43.478 0.00 0.00 0.00 3.34
478 479 4.040461 TCCTCTATGCTTTTAGGGAATCGG 59.960 45.833 0.00 0.00 0.00 4.18
479 480 3.740115 TCTATGCTTTTAGGGAATCGGC 58.260 45.455 0.00 0.00 0.00 5.54
480 481 2.736670 ATGCTTTTAGGGAATCGGCT 57.263 45.000 0.00 0.00 0.00 5.52
481 482 2.038387 TGCTTTTAGGGAATCGGCTC 57.962 50.000 0.00 0.00 0.00 4.70
482 483 0.938008 GCTTTTAGGGAATCGGCTCG 59.062 55.000 0.00 0.00 0.00 5.03
483 484 1.472728 GCTTTTAGGGAATCGGCTCGA 60.473 52.381 0.00 0.00 41.13 4.04
484 485 2.474816 CTTTTAGGGAATCGGCTCGAG 58.525 52.381 8.45 8.45 39.91 4.04
485 486 1.771565 TTTAGGGAATCGGCTCGAGA 58.228 50.000 18.75 0.00 39.91 4.04
486 487 1.996798 TTAGGGAATCGGCTCGAGAT 58.003 50.000 18.75 0.00 39.91 2.75
487 488 1.248486 TAGGGAATCGGCTCGAGATG 58.752 55.000 18.75 7.36 39.91 2.90
488 489 1.666234 GGGAATCGGCTCGAGATGC 60.666 63.158 18.75 0.54 39.91 3.91
489 490 1.365633 GGAATCGGCTCGAGATGCT 59.634 57.895 18.75 0.00 39.91 3.79
490 491 0.665972 GGAATCGGCTCGAGATGCTC 60.666 60.000 18.75 5.06 39.91 4.26
491 492 0.665972 GAATCGGCTCGAGATGCTCC 60.666 60.000 18.75 6.26 39.91 4.70
492 493 1.395045 AATCGGCTCGAGATGCTCCA 61.395 55.000 18.75 0.00 39.91 3.86
493 494 1.395045 ATCGGCTCGAGATGCTCCAA 61.395 55.000 18.75 0.00 39.91 3.53
494 495 1.153568 CGGCTCGAGATGCTCCAAA 60.154 57.895 18.75 0.00 0.00 3.28
495 496 1.150567 CGGCTCGAGATGCTCCAAAG 61.151 60.000 18.75 0.00 0.00 2.77
516 517 2.029828 GCACAGAAACGAGAGGAGAAGA 60.030 50.000 0.00 0.00 0.00 2.87
536 538 7.810260 AGAAGATTCTCCAAATTATAGCCACT 58.190 34.615 0.00 0.00 29.94 4.00
540 542 9.512588 AGATTCTCCAAATTATAGCCACTAATG 57.487 33.333 0.00 0.00 0.00 1.90
561 563 1.219664 CGATAGAAACCGGTGGCCA 59.780 57.895 8.52 0.00 39.76 5.36
627 633 6.021596 GCGTGAGGTACATTTGTTAATCAAG 58.978 40.000 0.00 0.00 37.35 3.02
669 676 0.322187 GCGTACCATCCAAACCCAGT 60.322 55.000 0.00 0.00 0.00 4.00
676 683 1.187567 ATCCAAACCCAGTTGCTGCC 61.188 55.000 0.00 0.00 0.00 4.85
677 684 2.336088 CAAACCCAGTTGCTGCCG 59.664 61.111 0.00 0.00 0.00 5.69
678 685 2.123897 AAACCCAGTTGCTGCCGT 60.124 55.556 0.00 0.00 0.00 5.68
679 686 2.193536 AAACCCAGTTGCTGCCGTC 61.194 57.895 0.00 0.00 0.00 4.79
683 690 3.716006 CAGTTGCTGCCGTCGGTG 61.716 66.667 13.94 7.57 0.00 4.94
686 693 4.243008 TTGCTGCCGTCGGTGGAA 62.243 61.111 13.94 10.83 0.00 3.53
687 694 4.680237 TGCTGCCGTCGGTGGAAG 62.680 66.667 13.94 7.05 37.78 3.46
699 731 1.336755 CGGTGGAAGAAAACAACAGGG 59.663 52.381 0.00 0.00 0.00 4.45
770 808 0.784778 GTCGCCACTCTTTGAACGAG 59.215 55.000 0.00 0.00 35.20 4.18
796 837 0.179240 CGCTTTAGCAGTCAACGCAG 60.179 55.000 2.29 0.00 42.21 5.18
814 855 2.429069 CACGGCCTTTTGCTTCGC 60.429 61.111 0.00 0.00 40.92 4.70
816 857 3.722295 CGGCCTTTTGCTTCGCGA 61.722 61.111 3.71 3.71 40.92 5.87
891 933 2.953821 CCGCCGTTGCTGTCAAAT 59.046 55.556 0.00 0.00 33.37 2.32
904 946 1.069935 TCAAATCCGTGGTGCGACA 59.930 52.632 0.00 0.00 44.77 4.35
957 999 2.900167 GAACCCAACACGTTCCCGC 61.900 63.158 0.00 0.00 37.70 6.13
958 1000 3.700831 AACCCAACACGTTCCCGCA 62.701 57.895 0.00 0.00 37.70 5.69
1012 1091 7.069331 ACATCTTTACATTTCCTCAAACCAACA 59.931 33.333 0.00 0.00 0.00 3.33
1038 1124 0.927537 ACATCACACAACACACGACG 59.072 50.000 0.00 0.00 0.00 5.12
1047 1133 2.246789 CAACACACGACGCAAAAACTT 58.753 42.857 0.00 0.00 0.00 2.66
1056 1142 4.095610 CGACGCAAAAACTTCTGAAACTT 58.904 39.130 0.00 0.00 0.00 2.66
1063 1149 6.487103 CAAAAACTTCTGAAACTTAGCGTCT 58.513 36.000 0.00 0.00 0.00 4.18
1131 1220 1.211969 GACGGTGCAGAGCTTCGTA 59.788 57.895 9.28 0.00 37.77 3.43
1154 1243 4.735132 CGAGGGCGCCTTCAACGA 62.735 66.667 34.32 0.00 31.76 3.85
1225 1314 3.242291 CCTACCCCGAGATGGCCC 61.242 72.222 0.00 0.00 35.87 5.80
1267 1356 1.595993 CCTCGAGAAGCACTTCGGGA 61.596 60.000 15.71 5.71 43.97 5.14
1431 1520 2.192979 GGGCTCGGATTCATGCCA 59.807 61.111 13.27 0.00 46.53 4.92
1540 1641 8.625786 TGTACTAGTGTATGTTACAGAGTGAA 57.374 34.615 5.39 0.64 39.77 3.18
1541 1642 8.509690 TGTACTAGTGTATGTTACAGAGTGAAC 58.490 37.037 5.39 0.00 39.77 3.18
1542 1643 6.921914 ACTAGTGTATGTTACAGAGTGAACC 58.078 40.000 0.00 0.00 39.77 3.62
1553 1654 3.327757 ACAGAGTGAACCAGGCATTAAGA 59.672 43.478 0.00 0.00 0.00 2.10
1639 1740 6.409704 TCAATGGCATTCAGCTATATCTACC 58.590 40.000 10.36 0.00 44.46 3.18
1715 1850 3.404224 AGAGTCATCGAGTAGCCGATA 57.596 47.619 0.00 0.00 46.26 2.92
1744 1879 7.743104 ACTGATAAATCATCCGATTAAATCGC 58.257 34.615 0.00 0.00 41.12 4.58
1790 1925 7.674772 ACCGATTAGCCTATTAATCCTCTACTT 59.325 37.037 0.00 0.00 36.93 2.24
1801 1936 0.826715 CCTCTACTTGCCAGCTAGCA 59.173 55.000 18.83 1.52 42.17 3.49
1820 1955 2.147958 CAAAGCAGCTACCCGTTAACA 58.852 47.619 6.39 0.00 0.00 2.41
1836 1971 6.212955 CCGTTAACAATTTTCTCACCAATGT 58.787 36.000 6.39 0.00 0.00 2.71
1881 2042 5.389830 CGAGTAAAATGTCGGGCATATGATG 60.390 44.000 6.97 0.00 36.67 3.07
1892 2053 4.142902 CGGGCATATGATGAAATAACGACC 60.143 45.833 6.97 0.00 0.00 4.79
1893 2054 5.003804 GGGCATATGATGAAATAACGACCT 58.996 41.667 6.97 0.00 0.00 3.85
1934 2095 0.821711 TCACGTTTCTGCCAAAGGGG 60.822 55.000 0.00 0.00 40.85 4.79
1935 2096 1.530655 ACGTTTCTGCCAAAGGGGG 60.531 57.895 0.00 0.00 37.04 5.40
1945 2106 0.539669 CCAAAGGGGGTCTCCAACAC 60.540 60.000 0.00 0.00 37.22 3.32
1964 2125 3.570125 ACACTCACTCTCAAATCGTCTGA 59.430 43.478 0.00 0.00 0.00 3.27
1967 2128 5.061933 CACTCACTCTCAAATCGTCTGAATG 59.938 44.000 0.00 0.00 0.00 2.67
1997 2159 5.221224 GGACCCATTTTATCATTCAATGCGA 60.221 40.000 0.00 0.00 0.00 5.10
2010 2172 4.356405 TCAATGCGATATCCCATCAGTT 57.644 40.909 3.37 0.00 0.00 3.16
2016 2178 2.225019 CGATATCCCATCAGTTTGCAGC 59.775 50.000 0.00 0.00 0.00 5.25
2023 2185 2.129555 ATCAGTTTGCAGCCCGGTCT 62.130 55.000 0.00 0.00 0.00 3.85
2033 2195 3.075005 CCCGGTCTGGATGTCCGT 61.075 66.667 0.00 0.00 43.93 4.69
2037 2199 1.076332 CGGTCTGGATGTCCGTTTTC 58.924 55.000 0.00 0.00 41.29 2.29
2040 2202 2.076863 GTCTGGATGTCCGTTTTCCTG 58.923 52.381 0.00 0.00 39.43 3.86
2045 2207 2.231235 GGATGTCCGTTTTCCTGCAAAT 59.769 45.455 0.00 0.00 0.00 2.32
2051 2213 2.035832 CCGTTTTCCTGCAAATGAAGGT 59.964 45.455 7.33 0.00 41.86 3.50
2066 2228 2.090999 TGAAGGTAAACCAAGGGGCTTT 60.091 45.455 1.26 0.00 38.89 3.51
2067 2229 3.140519 TGAAGGTAAACCAAGGGGCTTTA 59.859 43.478 1.26 0.00 38.89 1.85
2081 2243 3.636764 GGGGCTTTATGAACATTCGGATT 59.363 43.478 0.00 0.00 0.00 3.01
2086 2248 6.092748 GCTTTATGAACATTCGGATTGTTGT 58.907 36.000 19.56 11.95 37.43 3.32
2092 2254 2.223144 ACATTCGGATTGTTGTCACGTG 59.777 45.455 9.94 9.94 0.00 4.49
2126 2303 4.441695 CTCTCCCTTGCTCGCGCA 62.442 66.667 8.75 0.00 46.24 6.09
2218 2395 1.666011 GGACGCAACCTCTCACTGA 59.334 57.895 0.00 0.00 0.00 3.41
2227 2404 0.463204 CCTCTCACTGATGCCGACAT 59.537 55.000 0.00 0.00 39.98 3.06
2307 2484 5.168569 GTTCAATACCGAAGAGATGTGACA 58.831 41.667 0.00 0.00 0.00 3.58
2342 2519 2.663826 TTGCCGCATTTAAATGGGTC 57.336 45.000 31.51 24.77 44.93 4.46
2372 2551 4.850859 TCGCCAACGTCATTAAACATAG 57.149 40.909 0.00 0.00 41.18 2.23
2374 2553 5.113383 TCGCCAACGTCATTAAACATAGAT 58.887 37.500 0.00 0.00 41.18 1.98
2417 2598 1.270971 CGTCCGTATTAACACACCCG 58.729 55.000 0.00 0.00 0.00 5.28
2418 2599 1.001624 GTCCGTATTAACACACCCGC 58.998 55.000 0.00 0.00 0.00 6.13
2419 2600 0.896923 TCCGTATTAACACACCCGCT 59.103 50.000 0.00 0.00 0.00 5.52
2420 2601 1.275856 TCCGTATTAACACACCCGCTT 59.724 47.619 0.00 0.00 0.00 4.68
2425 2779 0.948678 TTAACACACCCGCTTCTTGC 59.051 50.000 0.00 0.00 38.57 4.01
2507 2861 4.579869 GTTTTGCTTCACATCCTCCTCTA 58.420 43.478 0.00 0.00 0.00 2.43
2519 2873 0.755686 CTCCTCTATGCACCACCTCC 59.244 60.000 0.00 0.00 0.00 4.30
2520 2874 0.691078 TCCTCTATGCACCACCTCCC 60.691 60.000 0.00 0.00 0.00 4.30
2557 2911 1.339610 CTAGCGCATTGTAGGAGAGCT 59.660 52.381 11.47 0.00 41.27 4.09
2564 2918 4.450053 GCATTGTAGGAGAGCTTCTCAAT 58.550 43.478 13.06 9.92 45.12 2.57
2581 2935 7.487822 TTCTCAATGAAGTAGAAGGATGAGT 57.512 36.000 0.00 0.00 35.66 3.41
2584 2938 7.179160 TCTCAATGAAGTAGAAGGATGAGTTGA 59.821 37.037 0.00 0.00 35.66 3.18
2594 2948 1.271597 GGATGAGTTGACTGCCCTTGT 60.272 52.381 0.00 0.00 0.00 3.16
2608 2962 3.612247 CTTGTGGACGGCTCCCAGG 62.612 68.421 0.00 0.00 35.34 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.033504 TGTTCTCAGGCGGTTCACTC 59.966 55.000 0.00 0.00 0.00 3.51
1 2 0.687354 ATGTTCTCAGGCGGTTCACT 59.313 50.000 0.00 0.00 0.00 3.41
2 3 1.464997 GAATGTTCTCAGGCGGTTCAC 59.535 52.381 0.00 0.00 0.00 3.18
3 4 1.808411 GAATGTTCTCAGGCGGTTCA 58.192 50.000 0.00 0.00 0.00 3.18
4 5 0.721718 CGAATGTTCTCAGGCGGTTC 59.278 55.000 0.00 0.00 0.00 3.62
5 6 0.673644 CCGAATGTTCTCAGGCGGTT 60.674 55.000 0.00 0.00 38.49 4.44
6 7 1.079127 CCGAATGTTCTCAGGCGGT 60.079 57.895 0.00 0.00 38.49 5.68
7 8 0.174845 TACCGAATGTTCTCAGGCGG 59.825 55.000 0.00 0.00 44.23 6.13
8 9 1.278238 GTACCGAATGTTCTCAGGCG 58.722 55.000 0.00 0.00 0.00 5.52
9 10 2.380084 TGTACCGAATGTTCTCAGGC 57.620 50.000 0.00 0.00 0.00 4.85
10 11 4.809426 GGTAATGTACCGAATGTTCTCAGG 59.191 45.833 0.00 0.00 39.39 3.86
11 12 5.968387 GGTAATGTACCGAATGTTCTCAG 57.032 43.478 0.00 0.00 39.39 3.35
24 25 3.408634 CGGATCCCCATTGGTAATGTAC 58.591 50.000 6.06 0.00 37.18 2.90
25 26 2.373836 CCGGATCCCCATTGGTAATGTA 59.626 50.000 6.06 0.00 37.18 2.29
26 27 1.144913 CCGGATCCCCATTGGTAATGT 59.855 52.381 6.06 0.00 37.18 2.71
27 28 1.144913 ACCGGATCCCCATTGGTAATG 59.855 52.381 9.46 0.00 38.63 1.90
28 29 1.529744 ACCGGATCCCCATTGGTAAT 58.470 50.000 9.46 0.00 34.77 1.89
29 30 1.064314 CAACCGGATCCCCATTGGTAA 60.064 52.381 9.46 0.00 34.77 2.85
30 31 0.548989 CAACCGGATCCCCATTGGTA 59.451 55.000 9.46 0.00 34.77 3.25
31 32 1.211567 TCAACCGGATCCCCATTGGT 61.212 55.000 9.46 4.11 32.06 3.67
32 33 0.466189 CTCAACCGGATCCCCATTGG 60.466 60.000 9.46 3.38 32.06 3.16
33 34 1.103398 GCTCAACCGGATCCCCATTG 61.103 60.000 9.46 8.45 32.29 2.82
34 35 1.227383 GCTCAACCGGATCCCCATT 59.773 57.895 9.46 0.00 0.00 3.16
35 36 2.919043 GCTCAACCGGATCCCCAT 59.081 61.111 9.46 0.00 0.00 4.00
36 37 3.781307 CGCTCAACCGGATCCCCA 61.781 66.667 9.46 0.00 0.00 4.96
37 38 3.447025 CTCGCTCAACCGGATCCCC 62.447 68.421 9.46 0.00 0.00 4.81
38 39 2.107141 CTCGCTCAACCGGATCCC 59.893 66.667 9.46 0.00 0.00 3.85
39 40 1.066587 CTCTCGCTCAACCGGATCC 59.933 63.158 9.46 0.00 0.00 3.36
40 41 1.590259 GCTCTCGCTCAACCGGATC 60.590 63.158 9.46 0.00 0.00 3.36
41 42 2.351244 TGCTCTCGCTCAACCGGAT 61.351 57.895 9.46 0.00 36.97 4.18
42 43 2.989253 TGCTCTCGCTCAACCGGA 60.989 61.111 9.46 0.00 36.97 5.14
43 44 2.811317 GTGCTCTCGCTCAACCGG 60.811 66.667 0.00 0.00 36.97 5.28
44 45 2.874010 ATCGTGCTCTCGCTCAACCG 62.874 60.000 0.00 0.00 36.97 4.44
45 46 1.142778 GATCGTGCTCTCGCTCAACC 61.143 60.000 0.00 0.00 36.97 3.77
46 47 1.142778 GGATCGTGCTCTCGCTCAAC 61.143 60.000 0.00 0.00 36.97 3.18
47 48 1.139734 GGATCGTGCTCTCGCTCAA 59.860 57.895 0.00 0.00 36.97 3.02
48 49 1.595093 TTGGATCGTGCTCTCGCTCA 61.595 55.000 0.00 0.00 36.97 4.26
49 50 0.458543 TTTGGATCGTGCTCTCGCTC 60.459 55.000 0.00 0.00 36.97 5.03
50 51 0.176680 ATTTGGATCGTGCTCTCGCT 59.823 50.000 0.00 0.00 36.97 4.93
51 52 1.852942 TATTTGGATCGTGCTCTCGC 58.147 50.000 0.00 0.00 0.00 5.03
52 53 3.706698 TCTTATTTGGATCGTGCTCTCG 58.293 45.455 0.00 0.00 0.00 4.04
53 54 5.755375 TGAATCTTATTTGGATCGTGCTCTC 59.245 40.000 0.00 0.00 0.00 3.20
54 55 5.674525 TGAATCTTATTTGGATCGTGCTCT 58.325 37.500 0.00 0.00 0.00 4.09
55 56 5.049818 CCTGAATCTTATTTGGATCGTGCTC 60.050 44.000 0.00 0.00 0.00 4.26
56 57 4.818546 CCTGAATCTTATTTGGATCGTGCT 59.181 41.667 0.00 0.00 0.00 4.40
57 58 4.555511 GCCTGAATCTTATTTGGATCGTGC 60.556 45.833 0.00 0.00 0.00 5.34
58 59 4.576053 TGCCTGAATCTTATTTGGATCGTG 59.424 41.667 0.00 0.00 0.00 4.35
59 60 4.576463 GTGCCTGAATCTTATTTGGATCGT 59.424 41.667 0.00 0.00 0.00 3.73
60 61 4.818546 AGTGCCTGAATCTTATTTGGATCG 59.181 41.667 0.00 0.00 0.00 3.69
61 62 6.995091 AGTAGTGCCTGAATCTTATTTGGATC 59.005 38.462 0.00 0.00 0.00 3.36
62 63 6.904626 AGTAGTGCCTGAATCTTATTTGGAT 58.095 36.000 0.00 0.00 0.00 3.41
63 64 6.313519 AGTAGTGCCTGAATCTTATTTGGA 57.686 37.500 0.00 0.00 0.00 3.53
64 65 6.599244 TCAAGTAGTGCCTGAATCTTATTTGG 59.401 38.462 0.00 0.00 0.00 3.28
65 66 7.615582 TCAAGTAGTGCCTGAATCTTATTTG 57.384 36.000 0.00 0.00 0.00 2.32
66 67 7.148171 GCTTCAAGTAGTGCCTGAATCTTATTT 60.148 37.037 0.00 0.00 0.00 1.40
67 68 6.317391 GCTTCAAGTAGTGCCTGAATCTTATT 59.683 38.462 0.00 0.00 0.00 1.40
68 69 5.819901 GCTTCAAGTAGTGCCTGAATCTTAT 59.180 40.000 0.00 0.00 0.00 1.73
69 70 5.178797 GCTTCAAGTAGTGCCTGAATCTTA 58.821 41.667 0.00 0.00 0.00 2.10
70 71 4.006319 GCTTCAAGTAGTGCCTGAATCTT 58.994 43.478 0.00 0.00 0.00 2.40
71 72 3.604582 GCTTCAAGTAGTGCCTGAATCT 58.395 45.455 0.00 0.00 0.00 2.40
72 73 2.349886 CGCTTCAAGTAGTGCCTGAATC 59.650 50.000 0.00 0.00 0.00 2.52
73 74 2.350522 CGCTTCAAGTAGTGCCTGAAT 58.649 47.619 0.00 0.00 0.00 2.57
74 75 1.795768 CGCTTCAAGTAGTGCCTGAA 58.204 50.000 0.00 0.00 0.00 3.02
75 76 0.670546 GCGCTTCAAGTAGTGCCTGA 60.671 55.000 0.00 0.00 43.99 3.86
76 77 1.790387 GCGCTTCAAGTAGTGCCTG 59.210 57.895 0.00 0.00 43.99 4.85
77 78 4.285851 GCGCTTCAAGTAGTGCCT 57.714 55.556 0.00 0.00 43.99 4.75
80 81 0.647410 CGGATGCGCTTCAAGTAGTG 59.353 55.000 22.93 2.14 0.00 2.74
81 82 0.530744 TCGGATGCGCTTCAAGTAGT 59.469 50.000 22.93 0.00 0.00 2.73
82 83 1.203928 CTCGGATGCGCTTCAAGTAG 58.796 55.000 22.93 11.08 0.00 2.57
83 84 0.179111 CCTCGGATGCGCTTCAAGTA 60.179 55.000 22.93 5.93 0.00 2.24
84 85 1.448540 CCTCGGATGCGCTTCAAGT 60.449 57.895 22.93 0.00 0.00 3.16
85 86 0.531532 ATCCTCGGATGCGCTTCAAG 60.532 55.000 22.93 18.15 32.98 3.02
86 87 0.530650 GATCCTCGGATGCGCTTCAA 60.531 55.000 22.93 10.73 34.60 2.69
87 88 1.068083 GATCCTCGGATGCGCTTCA 59.932 57.895 22.93 4.33 34.60 3.02
88 89 2.018866 CGATCCTCGGATGCGCTTC 61.019 63.158 14.55 14.55 36.00 3.86
89 90 2.028190 CGATCCTCGGATGCGCTT 59.972 61.111 9.73 0.55 36.00 4.68
90 91 2.907407 TCGATCCTCGGATGCGCT 60.907 61.111 9.73 0.00 40.88 5.92
91 92 2.407846 TTCTCGATCCTCGGATGCGC 62.408 60.000 0.00 0.00 40.88 6.09
92 93 0.661780 GTTCTCGATCCTCGGATGCG 60.662 60.000 2.58 0.00 40.88 4.73
93 94 0.319125 GGTTCTCGATCCTCGGATGC 60.319 60.000 2.58 0.00 40.88 3.91
94 95 1.323412 AGGTTCTCGATCCTCGGATG 58.677 55.000 2.58 0.00 40.88 3.51
95 96 2.372504 TCTAGGTTCTCGATCCTCGGAT 59.627 50.000 0.00 0.00 40.88 4.18
96 97 1.767088 TCTAGGTTCTCGATCCTCGGA 59.233 52.381 7.13 5.53 40.88 4.55
97 98 2.257691 TCTAGGTTCTCGATCCTCGG 57.742 55.000 7.13 3.75 40.88 4.63
98 99 4.839668 AATTCTAGGTTCTCGATCCTCG 57.160 45.455 7.13 2.91 42.10 4.63
99 100 6.150396 TGAAATTCTAGGTTCTCGATCCTC 57.850 41.667 7.13 0.00 35.51 3.71
100 101 6.739331 ATGAAATTCTAGGTTCTCGATCCT 57.261 37.500 8.57 8.57 37.80 3.24
101 102 7.385478 GGTTATGAAATTCTAGGTTCTCGATCC 59.615 40.741 0.00 0.00 0.00 3.36
102 103 7.926555 TGGTTATGAAATTCTAGGTTCTCGATC 59.073 37.037 0.00 0.00 0.00 3.69
103 104 7.792032 TGGTTATGAAATTCTAGGTTCTCGAT 58.208 34.615 0.00 0.00 0.00 3.59
104 105 7.177832 TGGTTATGAAATTCTAGGTTCTCGA 57.822 36.000 0.00 0.00 0.00 4.04
105 106 6.018669 GCTGGTTATGAAATTCTAGGTTCTCG 60.019 42.308 0.00 0.00 0.00 4.04
106 107 7.051000 AGCTGGTTATGAAATTCTAGGTTCTC 58.949 38.462 0.00 0.00 0.00 2.87
107 108 6.963322 AGCTGGTTATGAAATTCTAGGTTCT 58.037 36.000 0.00 0.00 0.00 3.01
108 109 6.261158 GGAGCTGGTTATGAAATTCTAGGTTC 59.739 42.308 0.00 0.00 0.00 3.62
109 110 6.122964 GGAGCTGGTTATGAAATTCTAGGTT 58.877 40.000 0.00 0.00 0.00 3.50
110 111 5.191722 TGGAGCTGGTTATGAAATTCTAGGT 59.808 40.000 0.00 0.00 0.00 3.08
111 112 5.684704 TGGAGCTGGTTATGAAATTCTAGG 58.315 41.667 0.00 0.00 0.00 3.02
112 113 6.599244 TGTTGGAGCTGGTTATGAAATTCTAG 59.401 38.462 0.00 0.00 0.00 2.43
113 114 6.480763 TGTTGGAGCTGGTTATGAAATTCTA 58.519 36.000 0.00 0.00 0.00 2.10
114 115 5.324409 TGTTGGAGCTGGTTATGAAATTCT 58.676 37.500 0.00 0.00 0.00 2.40
115 116 5.643379 TGTTGGAGCTGGTTATGAAATTC 57.357 39.130 0.00 0.00 0.00 2.17
116 117 5.716228 TCATGTTGGAGCTGGTTATGAAATT 59.284 36.000 0.00 0.00 0.00 1.82
117 118 5.263599 TCATGTTGGAGCTGGTTATGAAAT 58.736 37.500 0.00 0.00 0.00 2.17
118 119 4.661222 TCATGTTGGAGCTGGTTATGAAA 58.339 39.130 0.00 0.00 0.00 2.69
119 120 4.299586 TCATGTTGGAGCTGGTTATGAA 57.700 40.909 0.00 0.00 0.00 2.57
120 121 3.998913 TCATGTTGGAGCTGGTTATGA 57.001 42.857 0.00 0.00 0.00 2.15
121 122 5.105635 ACAAATCATGTTGGAGCTGGTTATG 60.106 40.000 0.00 0.00 40.06 1.90
122 123 5.018809 ACAAATCATGTTGGAGCTGGTTAT 58.981 37.500 0.00 0.00 40.06 1.89
123 124 4.406456 ACAAATCATGTTGGAGCTGGTTA 58.594 39.130 0.00 0.00 40.06 2.85
124 125 3.233507 ACAAATCATGTTGGAGCTGGTT 58.766 40.909 0.00 0.00 40.06 3.67
125 126 2.880443 ACAAATCATGTTGGAGCTGGT 58.120 42.857 0.00 0.00 40.06 4.00
135 136 7.604549 TGTCATTGATGCTTAACAAATCATGT 58.395 30.769 0.00 0.00 46.82 3.21
136 137 8.642908 ATGTCATTGATGCTTAACAAATCATG 57.357 30.769 0.00 0.00 30.76 3.07
137 138 8.692710 AGATGTCATTGATGCTTAACAAATCAT 58.307 29.630 0.00 0.00 30.76 2.45
138 139 8.058667 AGATGTCATTGATGCTTAACAAATCA 57.941 30.769 0.00 0.00 0.00 2.57
139 140 7.646922 GGAGATGTCATTGATGCTTAACAAATC 59.353 37.037 0.00 0.00 0.00 2.17
140 141 7.123098 TGGAGATGTCATTGATGCTTAACAAAT 59.877 33.333 0.00 0.00 0.00 2.32
141 142 6.433716 TGGAGATGTCATTGATGCTTAACAAA 59.566 34.615 0.00 0.00 0.00 2.83
142 143 5.945191 TGGAGATGTCATTGATGCTTAACAA 59.055 36.000 0.00 0.00 0.00 2.83
143 144 5.499313 TGGAGATGTCATTGATGCTTAACA 58.501 37.500 0.00 0.00 0.00 2.41
144 145 6.630444 ATGGAGATGTCATTGATGCTTAAC 57.370 37.500 0.00 0.00 0.00 2.01
145 146 7.774625 TGTTATGGAGATGTCATTGATGCTTAA 59.225 33.333 0.00 0.00 0.00 1.85
146 147 7.227314 GTGTTATGGAGATGTCATTGATGCTTA 59.773 37.037 0.00 0.00 0.00 3.09
147 148 6.039047 GTGTTATGGAGATGTCATTGATGCTT 59.961 38.462 0.00 0.00 0.00 3.91
148 149 5.530171 GTGTTATGGAGATGTCATTGATGCT 59.470 40.000 0.00 0.00 0.00 3.79
149 150 5.530171 AGTGTTATGGAGATGTCATTGATGC 59.470 40.000 0.00 0.00 0.00 3.91
150 151 7.517893 CGAAGTGTTATGGAGATGTCATTGATG 60.518 40.741 0.00 0.00 0.00 3.07
151 152 6.481313 CGAAGTGTTATGGAGATGTCATTGAT 59.519 38.462 0.00 0.00 0.00 2.57
152 153 5.812127 CGAAGTGTTATGGAGATGTCATTGA 59.188 40.000 0.00 0.00 0.00 2.57
153 154 5.582269 ACGAAGTGTTATGGAGATGTCATTG 59.418 40.000 0.00 0.00 42.51 2.82
154 155 5.734720 ACGAAGTGTTATGGAGATGTCATT 58.265 37.500 0.00 0.00 42.51 2.57
155 156 5.344743 ACGAAGTGTTATGGAGATGTCAT 57.655 39.130 0.00 0.00 42.51 3.06
156 157 4.801330 ACGAAGTGTTATGGAGATGTCA 57.199 40.909 0.00 0.00 42.51 3.58
157 158 5.892568 ACTACGAAGTGTTATGGAGATGTC 58.107 41.667 0.00 0.00 45.73 3.06
158 159 5.916661 ACTACGAAGTGTTATGGAGATGT 57.083 39.130 0.00 0.00 45.73 3.06
159 160 6.035005 CACAACTACGAAGTGTTATGGAGATG 59.965 42.308 0.00 0.00 45.73 2.90
160 161 6.071560 TCACAACTACGAAGTGTTATGGAGAT 60.072 38.462 0.00 0.00 45.73 2.75
161 162 5.242171 TCACAACTACGAAGTGTTATGGAGA 59.758 40.000 0.00 0.00 45.73 3.71
162 163 5.466819 TCACAACTACGAAGTGTTATGGAG 58.533 41.667 0.00 0.00 45.73 3.86
163 164 5.456548 TCACAACTACGAAGTGTTATGGA 57.543 39.130 0.00 0.00 45.73 3.41
164 165 6.721571 AATCACAACTACGAAGTGTTATGG 57.278 37.500 0.00 0.00 45.73 2.74
167 168 9.478768 TGATAAAATCACAACTACGAAGTGTTA 57.521 29.630 0.00 0.00 36.10 2.41
168 169 8.373048 TGATAAAATCACAACTACGAAGTGTT 57.627 30.769 0.00 0.00 36.10 3.32
169 170 7.956420 TGATAAAATCACAACTACGAAGTGT 57.044 32.000 0.00 0.00 36.10 3.55
170 171 8.116753 GGATGATAAAATCACAACTACGAAGTG 58.883 37.037 0.00 0.00 42.00 3.16
171 172 8.041323 AGGATGATAAAATCACAACTACGAAGT 58.959 33.333 0.00 0.00 43.88 3.01
172 173 8.425577 AGGATGATAAAATCACAACTACGAAG 57.574 34.615 0.00 0.00 43.01 3.79
174 175 9.476202 CATAGGATGATAAAATCACAACTACGA 57.524 33.333 0.00 0.00 43.01 3.43
175 176 9.261180 ACATAGGATGATAAAATCACAACTACG 57.739 33.333 0.00 0.00 43.01 3.51
194 195 9.045223 CGAATGATTCAAATGAAGTACATAGGA 57.955 33.333 5.95 0.00 38.38 2.94
195 196 7.800380 GCGAATGATTCAAATGAAGTACATAGG 59.200 37.037 5.95 5.06 38.38 2.57
196 197 8.554528 AGCGAATGATTCAAATGAAGTACATAG 58.445 33.333 5.95 6.80 38.38 2.23
197 198 8.337532 CAGCGAATGATTCAAATGAAGTACATA 58.662 33.333 5.95 0.00 38.38 2.29
198 199 7.148188 ACAGCGAATGATTCAAATGAAGTACAT 60.148 33.333 5.95 5.13 41.45 2.29
199 200 6.149308 ACAGCGAATGATTCAAATGAAGTACA 59.851 34.615 5.95 3.21 37.48 2.90
200 201 6.467047 CACAGCGAATGATTCAAATGAAGTAC 59.533 38.462 5.95 0.00 37.48 2.73
201 202 6.149308 ACACAGCGAATGATTCAAATGAAGTA 59.851 34.615 5.95 0.00 37.48 2.24
202 203 5.048504 ACACAGCGAATGATTCAAATGAAGT 60.049 36.000 5.95 3.19 37.48 3.01
203 204 5.396484 ACACAGCGAATGATTCAAATGAAG 58.604 37.500 5.95 2.68 37.48 3.02
204 205 5.375417 ACACAGCGAATGATTCAAATGAA 57.625 34.783 5.95 0.00 38.56 2.57
205 206 5.375417 AACACAGCGAATGATTCAAATGA 57.625 34.783 5.95 0.00 0.00 2.57
206 207 5.630264 TCAAACACAGCGAATGATTCAAATG 59.370 36.000 5.95 3.25 0.00 2.32
207 208 5.771469 TCAAACACAGCGAATGATTCAAAT 58.229 33.333 5.95 0.00 0.00 2.32
208 209 5.180367 TCAAACACAGCGAATGATTCAAA 57.820 34.783 5.95 0.00 0.00 2.69
209 210 4.827304 TCAAACACAGCGAATGATTCAA 57.173 36.364 5.95 0.00 0.00 2.69
210 211 4.827304 TTCAAACACAGCGAATGATTCA 57.173 36.364 5.95 0.00 0.00 2.57
211 212 6.363088 TCAAATTCAAACACAGCGAATGATTC 59.637 34.615 0.00 0.00 30.00 2.52
212 213 6.215121 TCAAATTCAAACACAGCGAATGATT 58.785 32.000 0.00 0.00 30.00 2.57
213 214 5.771469 TCAAATTCAAACACAGCGAATGAT 58.229 33.333 0.00 0.00 30.00 2.45
214 215 5.180367 TCAAATTCAAACACAGCGAATGA 57.820 34.783 0.00 0.00 30.00 2.57
215 216 5.886715 TTCAAATTCAAACACAGCGAATG 57.113 34.783 0.00 0.00 30.00 2.67
216 217 8.761575 ATTATTCAAATTCAAACACAGCGAAT 57.238 26.923 0.00 0.00 0.00 3.34
217 218 8.586570 AATTATTCAAATTCAAACACAGCGAA 57.413 26.923 0.00 0.00 0.00 4.70
218 219 8.586570 AAATTATTCAAATTCAAACACAGCGA 57.413 26.923 0.00 0.00 0.00 4.93
323 324 9.216117 GCCACCGAAATAAACTTGACTATATAT 57.784 33.333 0.00 0.00 0.00 0.86
324 325 7.658575 GGCCACCGAAATAAACTTGACTATATA 59.341 37.037 0.00 0.00 0.00 0.86
325 326 6.485648 GGCCACCGAAATAAACTTGACTATAT 59.514 38.462 0.00 0.00 0.00 0.86
326 327 5.818857 GGCCACCGAAATAAACTTGACTATA 59.181 40.000 0.00 0.00 0.00 1.31
327 328 4.638865 GGCCACCGAAATAAACTTGACTAT 59.361 41.667 0.00 0.00 0.00 2.12
328 329 4.004982 GGCCACCGAAATAAACTTGACTA 58.995 43.478 0.00 0.00 0.00 2.59
329 330 2.817844 GGCCACCGAAATAAACTTGACT 59.182 45.455 0.00 0.00 0.00 3.41
330 331 3.211803 GGCCACCGAAATAAACTTGAC 57.788 47.619 0.00 0.00 0.00 3.18
344 345 3.378911 TTCTTTTCATTTTCGGCCACC 57.621 42.857 2.24 0.00 0.00 4.61
345 346 5.465056 TCAAATTCTTTTCATTTTCGGCCAC 59.535 36.000 2.24 0.00 0.00 5.01
346 347 5.465056 GTCAAATTCTTTTCATTTTCGGCCA 59.535 36.000 2.24 0.00 0.00 5.36
347 348 5.465056 TGTCAAATTCTTTTCATTTTCGGCC 59.535 36.000 0.00 0.00 0.00 6.13
348 349 6.523676 TGTCAAATTCTTTTCATTTTCGGC 57.476 33.333 0.00 0.00 0.00 5.54
349 350 9.766277 TTTTTGTCAAATTCTTTTCATTTTCGG 57.234 25.926 0.00 0.00 0.00 4.30
364 365 9.171877 TGGAGCAAGTTTTTATTTTTGTCAAAT 57.828 25.926 0.00 0.00 0.00 2.32
365 366 8.553459 TGGAGCAAGTTTTTATTTTTGTCAAA 57.447 26.923 0.00 0.00 0.00 2.69
366 367 8.729805 ATGGAGCAAGTTTTTATTTTTGTCAA 57.270 26.923 0.00 0.00 0.00 3.18
367 368 8.729805 AATGGAGCAAGTTTTTATTTTTGTCA 57.270 26.923 0.00 0.00 0.00 3.58
380 381 9.914131 GAACTCTTAAATTTAATGGAGCAAGTT 57.086 29.630 19.56 14.96 0.00 2.66
381 382 8.237267 CGAACTCTTAAATTTAATGGAGCAAGT 58.763 33.333 19.56 9.86 0.00 3.16
382 383 7.218963 GCGAACTCTTAAATTTAATGGAGCAAG 59.781 37.037 19.56 14.11 0.00 4.01
383 384 7.027161 GCGAACTCTTAAATTTAATGGAGCAA 58.973 34.615 19.56 0.00 0.00 3.91
384 385 6.404293 GGCGAACTCTTAAATTTAATGGAGCA 60.404 38.462 19.56 0.00 0.00 4.26
385 386 5.971792 GGCGAACTCTTAAATTTAATGGAGC 59.028 40.000 19.56 15.38 0.00 4.70
386 387 7.321745 AGGCGAACTCTTAAATTTAATGGAG 57.678 36.000 18.65 18.65 0.00 3.86
387 388 8.262227 TCTAGGCGAACTCTTAAATTTAATGGA 58.738 33.333 10.97 5.58 0.00 3.41
388 389 8.433421 TCTAGGCGAACTCTTAAATTTAATGG 57.567 34.615 10.97 9.24 0.00 3.16
390 391 9.274206 GGATCTAGGCGAACTCTTAAATTTAAT 57.726 33.333 10.97 0.00 0.00 1.40
391 392 7.437267 CGGATCTAGGCGAACTCTTAAATTTAA 59.563 37.037 10.16 10.16 0.00 1.52
392 393 6.921857 CGGATCTAGGCGAACTCTTAAATTTA 59.078 38.462 0.00 0.00 0.00 1.40
393 394 5.753921 CGGATCTAGGCGAACTCTTAAATTT 59.246 40.000 0.00 0.00 0.00 1.82
394 395 5.068723 TCGGATCTAGGCGAACTCTTAAATT 59.931 40.000 0.00 0.00 0.00 1.82
395 396 4.583489 TCGGATCTAGGCGAACTCTTAAAT 59.417 41.667 0.00 0.00 0.00 1.40
396 397 3.949754 TCGGATCTAGGCGAACTCTTAAA 59.050 43.478 0.00 0.00 0.00 1.52
397 398 3.314635 GTCGGATCTAGGCGAACTCTTAA 59.685 47.826 0.00 0.00 0.00 1.85
398 399 2.877168 GTCGGATCTAGGCGAACTCTTA 59.123 50.000 0.00 0.00 0.00 2.10
399 400 1.677052 GTCGGATCTAGGCGAACTCTT 59.323 52.381 0.00 0.00 0.00 2.85
400 401 1.310904 GTCGGATCTAGGCGAACTCT 58.689 55.000 0.00 0.00 0.00 3.24
401 402 0.311477 GGTCGGATCTAGGCGAACTC 59.689 60.000 0.55 0.00 0.00 3.01
402 403 0.395311 TGGTCGGATCTAGGCGAACT 60.395 55.000 8.31 0.00 0.00 3.01
403 404 0.458669 TTGGTCGGATCTAGGCGAAC 59.541 55.000 0.77 0.77 0.00 3.95
404 405 1.187974 TTTGGTCGGATCTAGGCGAA 58.812 50.000 0.00 0.00 0.00 4.70
405 406 1.410004 ATTTGGTCGGATCTAGGCGA 58.590 50.000 0.00 0.00 0.00 5.54
406 407 2.240493 AATTTGGTCGGATCTAGGCG 57.760 50.000 0.00 0.00 0.00 5.52
407 408 4.704965 AGTAAATTTGGTCGGATCTAGGC 58.295 43.478 0.00 0.00 0.00 3.93
408 409 5.163343 TGGAGTAAATTTGGTCGGATCTAGG 60.163 44.000 0.00 0.00 0.00 3.02
409 410 5.753921 GTGGAGTAAATTTGGTCGGATCTAG 59.246 44.000 0.00 0.00 0.00 2.43
410 411 5.424252 AGTGGAGTAAATTTGGTCGGATCTA 59.576 40.000 0.00 0.00 0.00 1.98
411 412 4.225267 AGTGGAGTAAATTTGGTCGGATCT 59.775 41.667 0.00 0.00 0.00 2.75
412 413 4.514401 AGTGGAGTAAATTTGGTCGGATC 58.486 43.478 0.00 0.00 0.00 3.36
413 414 4.569719 AGTGGAGTAAATTTGGTCGGAT 57.430 40.909 0.00 0.00 0.00 4.18
414 415 5.687166 ATAGTGGAGTAAATTTGGTCGGA 57.313 39.130 0.00 0.00 0.00 4.55
415 416 5.465724 GCTATAGTGGAGTAAATTTGGTCGG 59.534 44.000 0.00 0.00 0.00 4.79
416 417 6.281405 AGCTATAGTGGAGTAAATTTGGTCG 58.719 40.000 0.00 0.00 0.00 4.79
417 418 9.043079 GTTAGCTATAGTGGAGTAAATTTGGTC 57.957 37.037 0.00 0.00 0.00 4.02
418 419 8.769359 AGTTAGCTATAGTGGAGTAAATTTGGT 58.231 33.333 0.00 0.00 0.00 3.67
419 420 9.262358 GAGTTAGCTATAGTGGAGTAAATTTGG 57.738 37.037 0.00 0.00 0.00 3.28
424 425 9.863650 ACATAGAGTTAGCTATAGTGGAGTAAA 57.136 33.333 0.84 0.00 30.20 2.01
425 426 9.863650 AACATAGAGTTAGCTATAGTGGAGTAA 57.136 33.333 0.84 0.00 39.09 2.24
426 427 9.863650 AAACATAGAGTTAGCTATAGTGGAGTA 57.136 33.333 0.84 0.00 40.26 2.59
427 428 8.770010 AAACATAGAGTTAGCTATAGTGGAGT 57.230 34.615 0.84 0.00 40.26 3.85
428 429 8.301002 GGAAACATAGAGTTAGCTATAGTGGAG 58.699 40.741 0.84 0.00 40.26 3.86
429 430 8.005388 AGGAAACATAGAGTTAGCTATAGTGGA 58.995 37.037 0.84 0.00 40.26 4.02
430 431 8.184304 AGGAAACATAGAGTTAGCTATAGTGG 57.816 38.462 0.84 0.00 40.26 4.00
431 432 8.301002 GGAGGAAACATAGAGTTAGCTATAGTG 58.699 40.741 0.84 0.00 40.26 2.74
432 433 8.228905 AGGAGGAAACATAGAGTTAGCTATAGT 58.771 37.037 0.84 0.00 40.26 2.12
433 434 8.644374 AGGAGGAAACATAGAGTTAGCTATAG 57.356 38.462 0.00 0.00 40.26 1.31
434 435 8.449625 AGAGGAGGAAACATAGAGTTAGCTATA 58.550 37.037 0.00 0.00 40.26 1.31
435 436 7.302184 AGAGGAGGAAACATAGAGTTAGCTAT 58.698 38.462 0.00 0.00 40.26 2.97
436 437 6.674573 AGAGGAGGAAACATAGAGTTAGCTA 58.325 40.000 0.00 0.00 40.26 3.32
437 438 5.524535 AGAGGAGGAAACATAGAGTTAGCT 58.475 41.667 0.00 0.00 40.26 3.32
438 439 5.862678 AGAGGAGGAAACATAGAGTTAGC 57.137 43.478 0.00 0.00 40.26 3.09
439 440 7.232534 AGCATAGAGGAGGAAACATAGAGTTAG 59.767 40.741 0.00 0.00 40.26 2.34
440 441 7.069986 AGCATAGAGGAGGAAACATAGAGTTA 58.930 38.462 0.00 0.00 40.26 2.24
441 442 5.902431 AGCATAGAGGAGGAAACATAGAGTT 59.098 40.000 0.00 0.00 43.89 3.01
442 443 5.463154 AGCATAGAGGAGGAAACATAGAGT 58.537 41.667 0.00 0.00 0.00 3.24
443 444 6.418057 AAGCATAGAGGAGGAAACATAGAG 57.582 41.667 0.00 0.00 0.00 2.43
444 445 6.814954 AAAGCATAGAGGAGGAAACATAGA 57.185 37.500 0.00 0.00 0.00 1.98
445 446 7.659390 CCTAAAAGCATAGAGGAGGAAACATAG 59.341 40.741 0.00 0.00 0.00 2.23
446 447 7.420214 CCCTAAAAGCATAGAGGAGGAAACATA 60.420 40.741 0.00 0.00 0.00 2.29
447 448 6.360618 CCTAAAAGCATAGAGGAGGAAACAT 58.639 40.000 0.00 0.00 0.00 2.71
448 449 5.339200 CCCTAAAAGCATAGAGGAGGAAACA 60.339 44.000 0.00 0.00 0.00 2.83
449 450 5.104485 TCCCTAAAAGCATAGAGGAGGAAAC 60.104 44.000 0.00 0.00 0.00 2.78
450 451 5.036916 TCCCTAAAAGCATAGAGGAGGAAA 58.963 41.667 0.00 0.00 0.00 3.13
451 452 4.631234 TCCCTAAAAGCATAGAGGAGGAA 58.369 43.478 0.00 0.00 0.00 3.36
452 453 4.280789 TCCCTAAAAGCATAGAGGAGGA 57.719 45.455 0.00 0.00 0.00 3.71
453 454 5.555966 GATTCCCTAAAAGCATAGAGGAGG 58.444 45.833 0.00 0.00 0.00 4.30
454 455 5.233988 CGATTCCCTAAAAGCATAGAGGAG 58.766 45.833 0.00 0.00 0.00 3.69
455 456 4.040461 CCGATTCCCTAAAAGCATAGAGGA 59.960 45.833 0.00 0.00 0.00 3.71
456 457 4.319177 CCGATTCCCTAAAAGCATAGAGG 58.681 47.826 0.00 0.00 0.00 3.69
457 458 3.748568 GCCGATTCCCTAAAAGCATAGAG 59.251 47.826 0.00 0.00 0.00 2.43
458 459 3.391296 AGCCGATTCCCTAAAAGCATAGA 59.609 43.478 0.00 0.00 0.00 1.98
459 460 3.744660 AGCCGATTCCCTAAAAGCATAG 58.255 45.455 0.00 0.00 0.00 2.23
460 461 3.740115 GAGCCGATTCCCTAAAAGCATA 58.260 45.455 0.00 0.00 0.00 3.14
461 462 2.576615 GAGCCGATTCCCTAAAAGCAT 58.423 47.619 0.00 0.00 0.00 3.79
462 463 1.742411 CGAGCCGATTCCCTAAAAGCA 60.742 52.381 0.00 0.00 0.00 3.91
463 464 0.938008 CGAGCCGATTCCCTAAAAGC 59.062 55.000 0.00 0.00 0.00 3.51
464 465 2.100916 TCTCGAGCCGATTCCCTAAAAG 59.899 50.000 7.81 0.00 34.61 2.27
465 466 2.104967 TCTCGAGCCGATTCCCTAAAA 58.895 47.619 7.81 0.00 34.61 1.52
466 467 1.771565 TCTCGAGCCGATTCCCTAAA 58.228 50.000 7.81 0.00 34.61 1.85
467 468 1.613925 CATCTCGAGCCGATTCCCTAA 59.386 52.381 7.81 0.00 34.61 2.69
468 469 1.248486 CATCTCGAGCCGATTCCCTA 58.752 55.000 7.81 0.00 34.61 3.53
469 470 2.045280 CATCTCGAGCCGATTCCCT 58.955 57.895 7.81 0.00 34.61 4.20
470 471 1.666234 GCATCTCGAGCCGATTCCC 60.666 63.158 7.81 0.00 34.61 3.97
471 472 0.665972 GAGCATCTCGAGCCGATTCC 60.666 60.000 7.81 0.00 34.61 3.01
472 473 0.665972 GGAGCATCTCGAGCCGATTC 60.666 60.000 7.81 1.60 34.61 2.52
473 474 1.365633 GGAGCATCTCGAGCCGATT 59.634 57.895 7.81 0.00 34.61 3.34
474 475 1.395045 TTGGAGCATCTCGAGCCGAT 61.395 55.000 7.81 0.00 34.61 4.18
475 476 1.604147 TTTGGAGCATCTCGAGCCGA 61.604 55.000 7.81 0.00 33.73 5.54
476 477 1.150567 CTTTGGAGCATCTCGAGCCG 61.151 60.000 7.81 1.68 33.73 5.52
477 478 2.687842 CTTTGGAGCATCTCGAGCC 58.312 57.895 7.81 3.05 33.73 4.70
488 489 2.478134 CTCTCGTTTCTGTGCTTTGGAG 59.522 50.000 0.00 0.00 0.00 3.86
489 490 2.483876 CTCTCGTTTCTGTGCTTTGGA 58.516 47.619 0.00 0.00 0.00 3.53
490 491 1.532868 CCTCTCGTTTCTGTGCTTTGG 59.467 52.381 0.00 0.00 0.00 3.28
491 492 2.478134 CTCCTCTCGTTTCTGTGCTTTG 59.522 50.000 0.00 0.00 0.00 2.77
492 493 2.365617 TCTCCTCTCGTTTCTGTGCTTT 59.634 45.455 0.00 0.00 0.00 3.51
493 494 1.964223 TCTCCTCTCGTTTCTGTGCTT 59.036 47.619 0.00 0.00 0.00 3.91
494 495 1.621992 TCTCCTCTCGTTTCTGTGCT 58.378 50.000 0.00 0.00 0.00 4.40
495 496 2.029828 TCTTCTCCTCTCGTTTCTGTGC 60.030 50.000 0.00 0.00 0.00 4.57
496 497 3.924918 TCTTCTCCTCTCGTTTCTGTG 57.075 47.619 0.00 0.00 0.00 3.66
497 498 4.770010 AGAATCTTCTCCTCTCGTTTCTGT 59.230 41.667 0.00 0.00 29.94 3.41
498 499 5.323371 AGAATCTTCTCCTCTCGTTTCTG 57.677 43.478 0.00 0.00 29.94 3.02
499 500 5.576447 GAGAATCTTCTCCTCTCGTTTCT 57.424 43.478 8.47 0.00 46.20 2.52
516 517 8.448008 TCCATTAGTGGCTATAATTTGGAGAAT 58.552 33.333 0.00 0.00 45.63 2.40
527 528 7.309621 GGTTTCTATCGTCCATTAGTGGCTATA 60.310 40.741 0.00 0.00 45.63 1.31
536 538 3.181473 CCACCGGTTTCTATCGTCCATTA 60.181 47.826 2.97 0.00 0.00 1.90
540 542 0.808847 GCCACCGGTTTCTATCGTCC 60.809 60.000 2.97 0.00 0.00 4.79
600 606 5.600908 TTAACAAATGTACCTCACGCTTC 57.399 39.130 0.00 0.00 0.00 3.86
627 633 1.529865 GTTCAACAGACGCCTTACCAC 59.470 52.381 0.00 0.00 0.00 4.16
669 676 4.243008 TTCCACCGACGGCAGCAA 62.243 61.111 15.39 0.00 0.00 3.91
676 683 1.666700 TGTTGTTTTCTTCCACCGACG 59.333 47.619 0.00 0.00 0.00 5.12
677 684 2.032924 CCTGTTGTTTTCTTCCACCGAC 59.967 50.000 0.00 0.00 0.00 4.79
678 685 2.294074 CCTGTTGTTTTCTTCCACCGA 58.706 47.619 0.00 0.00 0.00 4.69
679 686 1.336755 CCCTGTTGTTTTCTTCCACCG 59.663 52.381 0.00 0.00 0.00 4.94
681 688 1.686587 CCCCCTGTTGTTTTCTTCCAC 59.313 52.381 0.00 0.00 0.00 4.02
683 690 1.686587 CACCCCCTGTTGTTTTCTTCC 59.313 52.381 0.00 0.00 0.00 3.46
686 693 2.291930 TGAACACCCCCTGTTGTTTTCT 60.292 45.455 0.00 0.00 43.60 2.52
687 694 2.100749 CTGAACACCCCCTGTTGTTTTC 59.899 50.000 0.00 0.00 43.60 2.29
699 731 0.181350 CCCATAGAGCCTGAACACCC 59.819 60.000 0.00 0.00 0.00 4.61
748 786 0.232303 GTTCAAAGAGTGGCGACGTG 59.768 55.000 0.00 0.00 0.00 4.49
796 837 2.429069 CGAAGCAAAAGGCCGTGC 60.429 61.111 18.20 18.20 46.50 5.34
814 855 3.549150 CGCGCTCTGGAAAGCTCG 61.549 66.667 5.56 0.00 43.07 5.03
911 953 1.095228 AACTGTGGTGTTCGCTGGTG 61.095 55.000 0.00 0.00 0.00 4.17
957 999 4.389992 CACCTATTTATATCTGGCGCACTG 59.610 45.833 10.83 2.89 0.00 3.66
958 1000 4.569943 CACCTATTTATATCTGGCGCACT 58.430 43.478 10.83 0.00 0.00 4.40
1012 1091 4.060900 GTGTGTTGTGTGATGTGATCTCT 58.939 43.478 0.00 0.00 0.00 3.10
1038 1124 5.034797 ACGCTAAGTTTCAGAAGTTTTTGC 58.965 37.500 0.00 0.00 31.14 3.68
1047 1133 3.367087 GCCTACAGACGCTAAGTTTCAGA 60.367 47.826 0.00 0.00 0.00 3.27
1063 1149 1.547820 CAGAAGCTCTCTGTGCCTACA 59.452 52.381 14.26 0.00 45.76 2.74
1225 1314 1.670590 GGAGGCTCATGATCTCCCG 59.329 63.158 24.13 4.00 40.76 5.14
1366 1455 1.961180 ATCTCCGCCCGGAACTCTTG 61.961 60.000 0.73 0.00 44.66 3.02
1431 1520 1.593787 CTCGACCACCATCTGCACT 59.406 57.895 0.00 0.00 0.00 4.40
1540 1641 2.503356 CCTCACTCTCTTAATGCCTGGT 59.497 50.000 0.00 0.00 0.00 4.00
1541 1642 2.768527 TCCTCACTCTCTTAATGCCTGG 59.231 50.000 0.00 0.00 0.00 4.45
1542 1643 4.686191 ATCCTCACTCTCTTAATGCCTG 57.314 45.455 0.00 0.00 0.00 4.85
1671 1772 9.219603 TCTACTTGGATCAATTCTTAAACAGTG 57.780 33.333 0.00 0.00 0.00 3.66
1672 1773 9.442047 CTCTACTTGGATCAATTCTTAAACAGT 57.558 33.333 0.00 0.00 0.00 3.55
1674 1775 9.436957 GACTCTACTTGGATCAATTCTTAAACA 57.563 33.333 0.00 0.00 0.00 2.83
1675 1776 9.436957 TGACTCTACTTGGATCAATTCTTAAAC 57.563 33.333 0.00 0.00 0.00 2.01
1679 1780 6.983307 CGATGACTCTACTTGGATCAATTCTT 59.017 38.462 0.00 0.00 0.00 2.52
1685 1820 4.527944 ACTCGATGACTCTACTTGGATCA 58.472 43.478 0.00 0.00 0.00 2.92
1686 1821 5.334569 GCTACTCGATGACTCTACTTGGATC 60.335 48.000 0.00 0.00 0.00 3.36
1687 1822 4.517453 GCTACTCGATGACTCTACTTGGAT 59.483 45.833 0.00 0.00 0.00 3.41
1689 1824 3.003897 GGCTACTCGATGACTCTACTTGG 59.996 52.174 0.00 0.00 0.00 3.61
1691 1826 2.873472 CGGCTACTCGATGACTCTACTT 59.127 50.000 0.00 0.00 0.00 2.24
1742 1877 8.218441 TCGGTAAATTAATCGATCAAATAAGCG 58.782 33.333 20.22 20.22 0.00 4.68
1783 1918 2.680312 TTGCTAGCTGGCAAGTAGAG 57.320 50.000 30.95 1.35 45.64 2.43
1801 1936 2.554370 TGTTAACGGGTAGCTGCTTT 57.446 45.000 7.79 0.00 0.00 3.51
1862 1997 5.850557 TTTCATCATATGCCCGACATTTT 57.149 34.783 0.00 0.00 40.38 1.82
1866 2001 4.450757 CGTTATTTCATCATATGCCCGACA 59.549 41.667 0.00 0.00 0.00 4.35
1923 2084 2.080336 TTGGAGACCCCCTTTGGCAG 62.080 60.000 0.00 0.00 0.00 4.85
1934 2095 1.964223 TGAGAGTGAGTGTTGGAGACC 59.036 52.381 0.00 0.00 0.00 3.85
1935 2096 3.735237 TTGAGAGTGAGTGTTGGAGAC 57.265 47.619 0.00 0.00 0.00 3.36
1945 2106 5.061933 CACATTCAGACGATTTGAGAGTGAG 59.938 44.000 0.00 0.00 35.22 3.51
1967 2128 5.186797 TGAATGATAAAATGGGTCCCAACAC 59.813 40.000 16.55 4.48 36.95 3.32
1997 2159 2.590821 GGCTGCAAACTGATGGGATAT 58.409 47.619 0.50 0.00 0.00 1.63
2010 2172 3.329889 ATCCAGACCGGGCTGCAA 61.330 61.111 33.23 22.12 34.56 4.08
2023 2185 0.109532 TGCAGGAAAACGGACATCCA 59.890 50.000 0.00 0.00 35.62 3.41
2033 2195 5.129485 TGGTTTACCTTCATTTGCAGGAAAA 59.871 36.000 3.16 0.00 36.82 2.29
2037 2199 4.559153 CTTGGTTTACCTTCATTTGCAGG 58.441 43.478 0.00 0.00 36.82 4.85
2040 2202 3.306710 CCCCTTGGTTTACCTTCATTTGC 60.307 47.826 0.00 0.00 36.82 3.68
2045 2207 1.154430 AGCCCCTTGGTTTACCTTCA 58.846 50.000 0.00 0.00 36.82 3.02
2066 2228 5.163903 CGTGACAACAATCCGAATGTTCATA 60.164 40.000 0.00 0.00 38.90 2.15
2067 2229 4.378356 CGTGACAACAATCCGAATGTTCAT 60.378 41.667 0.00 0.00 38.90 2.57
2086 2248 0.470341 TTTGGATGGGTCACACGTGA 59.530 50.000 25.01 0.00 37.24 4.35
2092 2254 3.339141 GAGAGAGTTTTGGATGGGTCAC 58.661 50.000 0.00 0.00 0.00 3.67
2100 2277 2.039084 GAGCAAGGGAGAGAGTTTTGGA 59.961 50.000 0.00 0.00 0.00 3.53
2126 2303 2.175878 ACTGCTTCGCTTGAGAATGT 57.824 45.000 0.00 0.00 0.00 2.71
2128 2305 1.198637 GCAACTGCTTCGCTTGAGAAT 59.801 47.619 0.00 0.00 38.21 2.40
2164 2341 0.247460 AATGCAGCGCTGACACTCTA 59.753 50.000 40.21 16.12 0.00 2.43
2206 2383 0.247736 GTCGGCATCAGTGAGAGGTT 59.752 55.000 0.00 0.00 0.00 3.50
2218 2395 1.002624 ACCGGTTCAATGTCGGCAT 60.003 52.632 0.00 0.00 46.87 4.40
2268 2445 4.586235 ACAGGTGTGGGCACTGGC 62.586 66.667 0.00 0.00 44.65 4.85
2271 2448 0.185901 ATTGAACAGGTGTGGGCACT 59.814 50.000 0.00 0.00 44.65 4.40
2278 2455 3.576982 TCTCTTCGGTATTGAACAGGTGT 59.423 43.478 0.00 0.00 0.00 4.16
2307 2484 2.741878 CGGCAAATATCAGTCCCGTCTT 60.742 50.000 0.00 0.00 0.00 3.01
2372 2551 1.200948 GTTGGTTTCTCTGCCTGCATC 59.799 52.381 0.00 0.00 0.00 3.91
2374 2553 0.183492 AGTTGGTTTCTCTGCCTGCA 59.817 50.000 0.00 0.00 0.00 4.41
2408 2589 3.432186 GCAAGAAGCGGGTGTGTT 58.568 55.556 0.00 0.00 0.00 3.32
2417 2598 3.066814 CCAGCCAGGGCAAGAAGC 61.067 66.667 13.63 0.00 44.88 3.86
2467 2821 0.105408 ACGAGGTGTAGTGCGGTTTT 59.895 50.000 0.00 0.00 0.00 2.43
2519 2873 2.360350 AGCTTGTGGTCATGGCGG 60.360 61.111 0.00 0.00 0.00 6.13
2520 2874 0.108186 TAGAGCTTGTGGTCATGGCG 60.108 55.000 0.00 0.00 42.66 5.69
2544 2898 5.946942 TCATTGAGAAGCTCTCCTACAAT 57.053 39.130 9.71 0.00 42.73 2.71
2557 2911 7.487822 ACTCATCCTTCTACTTCATTGAGAA 57.512 36.000 0.00 0.00 34.78 2.87
2564 2918 5.567623 GCAGTCAACTCATCCTTCTACTTCA 60.568 44.000 0.00 0.00 0.00 3.02
2577 2931 0.179020 CCACAAGGGCAGTCAACTCA 60.179 55.000 0.00 0.00 0.00 3.41
2581 2935 1.227823 CGTCCACAAGGGCAGTCAA 60.228 57.895 0.00 0.00 40.51 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.