Multiple sequence alignment - TraesCS5B01G259100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G259100 chr5B 100.000 9187 0 0 1 9187 441540514 441531328 0.000000e+00 16966.0
1 TraesCS5B01G259100 chr5B 96.970 396 11 1 1 395 359269157 359269552 0.000000e+00 664.0
2 TraesCS5B01G259100 chr5A 96.007 6436 193 28 1845 8248 474585980 474579577 0.000000e+00 10403.0
3 TraesCS5B01G259100 chr5A 94.557 790 31 7 659 1436 474587192 474586403 0.000000e+00 1210.0
4 TraesCS5B01G259100 chr5A 92.308 494 20 10 8371 8864 474579025 474578550 0.000000e+00 686.0
5 TraesCS5B01G259100 chr5A 92.020 401 20 3 1458 1847 474586414 474586015 3.750000e-153 553.0
6 TraesCS5B01G259100 chr5A 87.658 316 36 2 1 314 466585553 466585867 1.890000e-96 364.0
7 TraesCS5B01G259100 chr5A 89.109 303 18 9 8855 9156 474578503 474578215 6.780000e-96 363.0
8 TraesCS5B01G259100 chr5A 100.000 30 0 0 9158 9187 474578151 474578122 1.000000e-03 56.5
9 TraesCS5B01G259100 chr5D 96.119 5927 175 27 1845 7730 371670765 371664853 0.000000e+00 9620.0
10 TraesCS5B01G259100 chr5D 91.979 1309 62 26 7903 9187 371664607 371663318 0.000000e+00 1796.0
11 TraesCS5B01G259100 chr5D 92.637 1168 46 15 692 1852 371671929 371670795 0.000000e+00 1644.0
12 TraesCS5B01G259100 chr5D 93.199 397 24 2 1 395 527179621 527180016 1.720000e-161 580.0
13 TraesCS5B01G259100 chr5D 90.909 231 21 0 396 626 26068546 26068316 2.490000e-80 311.0
14 TraesCS5B01G259100 chr5D 90.043 231 23 0 396 626 26046357 26046127 5.390000e-77 300.0
15 TraesCS5B01G259100 chr5D 90.043 231 23 0 396 626 26049252 26049022 5.390000e-77 300.0
16 TraesCS5B01G259100 chr5D 88.421 95 10 1 7754 7847 382868402 382868496 7.540000e-21 113.0
17 TraesCS5B01G259100 chr7A 92.371 367 25 3 1 365 85646818 85647183 3.800000e-143 520.0
18 TraesCS5B01G259100 chr7A 87.463 335 41 1 1 334 617691893 617692227 1.450000e-102 385.0
19 TraesCS5B01G259100 chr7A 89.655 145 12 1 1071 1212 217587313 217587169 2.040000e-41 182.0
20 TraesCS5B01G259100 chr3A 91.136 361 28 4 6 365 726422034 726422391 3.860000e-133 486.0
21 TraesCS5B01G259100 chr6D 86.387 382 50 2 1 380 266954110 266954491 5.130000e-112 416.0
22 TraesCS5B01G259100 chr6D 90.909 88 8 0 7760 7847 438275701 438275614 1.620000e-22 119.0
23 TraesCS5B01G259100 chr6D 90.909 88 7 1 7765 7852 146072904 146072818 5.830000e-22 117.0
24 TraesCS5B01G259100 chr6B 86.446 332 39 4 7 334 578462653 578462324 8.770000e-95 359.0
25 TraesCS5B01G259100 chr2D 90.637 267 21 4 396 658 553361866 553361600 1.470000e-92 351.0
26 TraesCS5B01G259100 chr1D 85.714 308 35 8 1 303 345238568 345238871 5.350000e-82 316.0
27 TraesCS5B01G259100 chr4D 87.391 230 27 2 396 623 346193224 346193453 7.070000e-66 263.0
28 TraesCS5B01G259100 chr4D 86.792 106 9 5 7757 7861 403409527 403409628 7.540000e-21 113.0
29 TraesCS5B01G259100 chr7D 73.768 751 152 29 3750 4485 205552158 205551438 4.260000e-63 254.0
30 TraesCS5B01G259100 chr7D 89.655 145 12 1 1071 1212 205554140 205553996 2.040000e-41 182.0
31 TraesCS5B01G259100 chr7D 86.275 102 14 0 7755 7856 519264637 519264536 2.710000e-20 111.0
32 TraesCS5B01G259100 chr7D 78.824 170 29 7 396 561 134766604 134766438 3.510000e-19 108.0
33 TraesCS5B01G259100 chrUn 83.262 233 32 3 396 626 22380935 22381162 3.360000e-49 207.0
34 TraesCS5B01G259100 chr7B 89.655 145 12 1 1071 1212 196868474 196868618 2.040000e-41 182.0
35 TraesCS5B01G259100 chr7B 84.762 105 14 2 7756 7859 24406925 24407028 4.540000e-18 104.0
36 TraesCS5B01G259100 chr1A 89.565 115 12 0 512 626 552049126 552049012 7.430000e-31 147.0
37 TraesCS5B01G259100 chr2B 90.000 90 8 1 7757 7846 601199829 601199917 2.100000e-21 115.0
38 TraesCS5B01G259100 chr2B 97.059 34 0 1 626 659 769969262 769969230 1.000000e-03 56.5
39 TraesCS5B01G259100 chr3B 89.655 87 9 0 7761 7847 654335636 654335550 2.710000e-20 111.0
40 TraesCS5B01G259100 chr6A 87.368 95 10 2 7754 7846 149957673 149957767 3.510000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G259100 chr5B 441531328 441540514 9186 True 16966.000000 16966 100.000000 1 9187 1 chr5B.!!$R1 9186
1 TraesCS5B01G259100 chr5A 474578122 474587192 9070 True 2211.916667 10403 94.000167 659 9187 6 chr5A.!!$R1 8528
2 TraesCS5B01G259100 chr5D 371663318 371671929 8611 True 4353.333333 9620 93.578333 692 9187 3 chr5D.!!$R3 8495
3 TraesCS5B01G259100 chr5D 26046127 26049252 3125 True 300.000000 300 90.043000 396 626 2 chr5D.!!$R2 230
4 TraesCS5B01G259100 chr7D 205551438 205554140 2702 True 218.000000 254 81.711500 1071 4485 2 chr7D.!!$R3 3414

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 335 0.029300 CAACAAGACCCGTGTTGCAG 59.971 55.000 11.46 0.0 46.63 4.41 F
518 519 0.034767 CAGGTGTGTCTGGATGGCAT 60.035 55.000 0.00 0.0 30.58 4.40 F
608 609 0.329931 TGGTTGTCGGGGCATGTATT 59.670 50.000 0.00 0.0 0.00 1.89 F
1542 2719 0.378257 ACTCTGCGCACTGTTTTGTG 59.622 50.000 5.66 0.0 40.62 3.33 F
1701 2888 1.000385 TGTGCTCTTTGGGAAAATGCG 60.000 47.619 0.00 0.0 0.00 4.73 F
2745 3977 1.069668 GGTCTACCGTGGTGTTTGAGT 59.930 52.381 0.72 0.0 0.00 3.41 F
3937 5829 1.200948 CTTTCTTGCAGCTACCTTGCC 59.799 52.381 0.00 0.0 40.81 4.52 F
4332 6677 2.104963 GGTGAGGGTGCTATTCCTAAGG 59.895 54.545 0.00 0.0 32.74 2.69 F
4904 7251 3.112263 ACTCGGGGTGATCCAAGATTAA 58.888 45.455 0.00 0.0 37.22 1.40 F
6432 8792 0.179000 ATGATCTTCCTGACGGGCAC 59.821 55.000 0.00 0.0 34.39 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 3450 0.111639 GCCTACACCCTTTGTTCCCA 59.888 55.000 0.00 0.00 39.91 4.37 R
2552 3784 2.297315 CAGAGAGTAAGACACTGGCACA 59.703 50.000 0.00 0.00 37.72 4.57 R
2639 3871 3.561725 CAGTCCTTGTTCAAGAGTGGAAC 59.438 47.826 13.29 0.00 43.78 3.62 R
2745 3977 1.202710 ACAAACACGTGGATGGCTGTA 60.203 47.619 21.57 0.00 0.00 2.74 R
3679 5340 3.370209 GGACATTAAGGTACTGTGGACCC 60.370 52.174 0.00 0.00 40.86 4.46 R
4652 6999 3.826157 CAGAAATAAGCCCAACTCCAACA 59.174 43.478 0.00 0.00 0.00 3.33 R
4821 7168 1.137872 AGTGGCATGCTAGACTGCTAC 59.862 52.381 18.92 19.24 46.54 3.58 R
6142 8493 0.172803 AGTAAGGCGCCTAACAGACG 59.827 55.000 33.07 0.00 0.00 4.18 R
6778 9148 0.542702 AACATCCACCTGCCCCTTTG 60.543 55.000 0.00 0.00 0.00 2.77 R
8251 10799 0.107752 CCAGCCCTGAGAGCTTCTTC 60.108 60.000 0.00 0.00 38.95 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.138665 TTACCATCACCCAGCGGA 57.861 55.556 0.00 0.00 0.00 5.54
18 19 2.615244 TTACCATCACCCAGCGGAT 58.385 52.632 0.00 0.00 0.00 4.18
19 20 0.468226 TTACCATCACCCAGCGGATC 59.532 55.000 0.00 0.00 0.00 3.36
20 21 1.744320 TACCATCACCCAGCGGATCG 61.744 60.000 0.00 0.00 0.00 3.69
53 54 3.721706 CCACCTCCCCTGCCTCAC 61.722 72.222 0.00 0.00 0.00 3.51
54 55 2.930019 CACCTCCCCTGCCTCACA 60.930 66.667 0.00 0.00 0.00 3.58
55 56 2.930562 ACCTCCCCTGCCTCACAC 60.931 66.667 0.00 0.00 0.00 3.82
56 57 4.087892 CCTCCCCTGCCTCACACG 62.088 72.222 0.00 0.00 0.00 4.49
57 58 3.314331 CTCCCCTGCCTCACACGT 61.314 66.667 0.00 0.00 0.00 4.49
58 59 3.596066 CTCCCCTGCCTCACACGTG 62.596 68.421 15.48 15.48 0.00 4.49
59 60 3.941188 CCCCTGCCTCACACGTGT 61.941 66.667 17.22 17.22 0.00 4.49
60 61 2.357517 CCCTGCCTCACACGTGTC 60.358 66.667 20.49 8.30 0.00 3.67
61 62 2.357517 CCTGCCTCACACGTGTCC 60.358 66.667 20.49 8.16 0.00 4.02
62 63 2.357517 CTGCCTCACACGTGTCCC 60.358 66.667 20.49 7.79 0.00 4.46
63 64 3.157949 TGCCTCACACGTGTCCCA 61.158 61.111 20.49 10.41 0.00 4.37
64 65 2.357517 GCCTCACACGTGTCCCAG 60.358 66.667 20.49 14.43 0.00 4.45
65 66 3.138625 CCTCACACGTGTCCCAGT 58.861 61.111 20.49 0.00 0.00 4.00
66 67 1.300931 CCTCACACGTGTCCCAGTG 60.301 63.158 20.49 6.75 43.46 3.66
67 68 1.739667 CTCACACGTGTCCCAGTGA 59.260 57.895 20.49 11.14 40.56 3.41
68 69 1.739667 TCACACGTGTCCCAGTGAG 59.260 57.895 20.49 5.03 40.56 3.51
69 70 0.753848 TCACACGTGTCCCAGTGAGA 60.754 55.000 20.49 7.66 40.56 3.27
70 71 0.318441 CACACGTGTCCCAGTGAGAT 59.682 55.000 20.49 0.00 40.56 2.75
71 72 1.048601 ACACGTGTCCCAGTGAGATT 58.951 50.000 17.22 0.00 40.56 2.40
72 73 1.000955 ACACGTGTCCCAGTGAGATTC 59.999 52.381 17.22 0.00 40.56 2.52
73 74 0.608640 ACGTGTCCCAGTGAGATTCC 59.391 55.000 0.00 0.00 0.00 3.01
74 75 0.608130 CGTGTCCCAGTGAGATTCCA 59.392 55.000 0.00 0.00 0.00 3.53
75 76 1.673033 CGTGTCCCAGTGAGATTCCAC 60.673 57.143 0.00 0.00 37.32 4.02
76 77 1.347707 GTGTCCCAGTGAGATTCCACA 59.652 52.381 0.00 0.00 39.42 4.17
77 78 1.347707 TGTCCCAGTGAGATTCCACAC 59.652 52.381 0.00 0.00 39.42 3.82
78 79 1.347707 GTCCCAGTGAGATTCCACACA 59.652 52.381 12.05 0.00 39.42 3.72
79 80 1.347707 TCCCAGTGAGATTCCACACAC 59.652 52.381 12.05 0.00 39.42 3.82
80 81 1.349026 CCCAGTGAGATTCCACACACT 59.651 52.381 12.05 0.00 43.05 3.55
81 82 2.567169 CCCAGTGAGATTCCACACACTA 59.433 50.000 12.05 0.00 40.84 2.74
82 83 3.198635 CCCAGTGAGATTCCACACACTAT 59.801 47.826 12.05 0.00 40.84 2.12
83 84 4.437239 CCAGTGAGATTCCACACACTATC 58.563 47.826 12.05 0.00 40.84 2.08
84 85 4.437239 CAGTGAGATTCCACACACTATCC 58.563 47.826 12.05 0.00 40.84 2.59
85 86 4.161189 CAGTGAGATTCCACACACTATCCT 59.839 45.833 12.05 0.00 40.84 3.24
86 87 4.780021 AGTGAGATTCCACACACTATCCTT 59.220 41.667 12.05 0.00 40.96 3.36
87 88 5.249393 AGTGAGATTCCACACACTATCCTTT 59.751 40.000 12.05 0.00 40.96 3.11
88 89 5.352569 GTGAGATTCCACACACTATCCTTTG 59.647 44.000 0.00 0.00 37.04 2.77
89 90 5.013079 TGAGATTCCACACACTATCCTTTGT 59.987 40.000 0.00 0.00 0.00 2.83
90 91 5.491982 AGATTCCACACACTATCCTTTGTC 58.508 41.667 0.00 0.00 0.00 3.18
91 92 3.313012 TCCACACACTATCCTTTGTCG 57.687 47.619 0.00 0.00 0.00 4.35
92 93 2.894765 TCCACACACTATCCTTTGTCGA 59.105 45.455 0.00 0.00 0.00 4.20
93 94 3.322541 TCCACACACTATCCTTTGTCGAA 59.677 43.478 0.00 0.00 0.00 3.71
94 95 3.432252 CCACACACTATCCTTTGTCGAAC 59.568 47.826 0.00 0.00 0.00 3.95
95 96 3.121279 CACACACTATCCTTTGTCGAACG 59.879 47.826 0.00 0.00 0.00 3.95
96 97 2.092211 CACACTATCCTTTGTCGAACGC 59.908 50.000 0.00 0.00 0.00 4.84
97 98 2.288579 ACACTATCCTTTGTCGAACGCA 60.289 45.455 0.00 0.00 0.00 5.24
98 99 2.930040 CACTATCCTTTGTCGAACGCAT 59.070 45.455 0.00 0.00 0.00 4.73
99 100 3.370978 CACTATCCTTTGTCGAACGCATT 59.629 43.478 0.00 0.00 0.00 3.56
100 101 4.000988 ACTATCCTTTGTCGAACGCATTT 58.999 39.130 0.00 0.00 0.00 2.32
101 102 2.961522 TCCTTTGTCGAACGCATTTC 57.038 45.000 0.00 0.00 0.00 2.17
102 103 2.489971 TCCTTTGTCGAACGCATTTCT 58.510 42.857 0.00 0.00 31.20 2.52
103 104 2.223144 TCCTTTGTCGAACGCATTTCTG 59.777 45.455 0.00 0.00 31.20 3.02
104 105 1.971962 CTTTGTCGAACGCATTTCTGC 59.028 47.619 0.00 0.00 45.31 4.26
118 119 2.042686 TTCTGCAACAGAAGCTGTGT 57.957 45.000 5.94 0.00 44.62 3.72
119 120 2.042686 TCTGCAACAGAAGCTGTGTT 57.957 45.000 8.57 8.57 44.62 3.32
120 121 2.368439 TCTGCAACAGAAGCTGTGTTT 58.632 42.857 11.18 0.00 44.62 2.83
121 122 2.355756 TCTGCAACAGAAGCTGTGTTTC 59.644 45.455 11.18 8.10 44.62 2.78
122 123 2.357009 CTGCAACAGAAGCTGTGTTTCT 59.643 45.455 11.18 0.00 44.62 2.52
141 142 7.406553 TGTTTCTGAAACATATATAGCGTTGC 58.593 34.615 27.14 1.41 45.79 4.17
142 143 7.065204 TGTTTCTGAAACATATATAGCGTTGCA 59.935 33.333 27.14 7.81 45.79 4.08
143 144 7.546778 TTCTGAAACATATATAGCGTTGCAA 57.453 32.000 0.00 0.00 27.85 4.08
144 145 7.728847 TCTGAAACATATATAGCGTTGCAAT 57.271 32.000 0.59 0.00 27.85 3.56
145 146 7.575365 TCTGAAACATATATAGCGTTGCAATG 58.425 34.615 14.54 14.54 27.85 2.82
146 147 6.667370 TGAAACATATATAGCGTTGCAATGG 58.333 36.000 19.93 8.34 0.00 3.16
147 148 6.262049 TGAAACATATATAGCGTTGCAATGGT 59.738 34.615 25.22 25.22 0.00 3.55
148 149 5.862924 ACATATATAGCGTTGCAATGGTC 57.137 39.130 25.58 7.37 0.00 4.02
149 150 5.551233 ACATATATAGCGTTGCAATGGTCT 58.449 37.500 25.58 18.57 0.00 3.85
150 151 6.697395 ACATATATAGCGTTGCAATGGTCTA 58.303 36.000 25.58 20.04 0.00 2.59
151 152 6.590292 ACATATATAGCGTTGCAATGGTCTAC 59.410 38.462 25.58 5.90 0.00 2.59
152 153 1.635844 TAGCGTTGCAATGGTCTACG 58.364 50.000 25.58 13.30 36.17 3.51
153 154 0.037697 AGCGTTGCAATGGTCTACGA 60.038 50.000 17.41 0.00 35.35 3.43
154 155 0.094730 GCGTTGCAATGGTCTACGAC 59.905 55.000 19.93 2.71 35.35 4.34
155 156 0.365523 CGTTGCAATGGTCTACGACG 59.634 55.000 11.00 0.00 35.35 5.12
156 157 1.705256 GTTGCAATGGTCTACGACGA 58.295 50.000 0.59 0.00 32.65 4.20
157 158 1.654105 GTTGCAATGGTCTACGACGAG 59.346 52.381 0.59 0.00 32.65 4.18
158 159 0.885879 TGCAATGGTCTACGACGAGT 59.114 50.000 0.00 0.00 32.65 4.18
159 160 1.135489 TGCAATGGTCTACGACGAGTC 60.135 52.381 0.00 0.00 32.65 3.36
160 161 1.132643 GCAATGGTCTACGACGAGTCT 59.867 52.381 0.00 0.00 32.65 3.24
161 162 2.353889 GCAATGGTCTACGACGAGTCTA 59.646 50.000 0.00 0.00 32.65 2.59
162 163 3.788135 GCAATGGTCTACGACGAGTCTAC 60.788 52.174 0.00 0.00 32.65 2.59
163 164 1.633561 TGGTCTACGACGAGTCTACG 58.366 55.000 0.00 4.70 39.31 3.51
165 166 1.996191 GGTCTACGACGAGTCTACGTT 59.004 52.381 14.48 2.92 46.52 3.99
166 167 2.413453 GGTCTACGACGAGTCTACGTTT 59.587 50.000 14.48 0.00 46.52 3.60
167 168 3.120511 GGTCTACGACGAGTCTACGTTTT 60.121 47.826 14.48 0.00 46.52 2.43
168 169 3.837448 GTCTACGACGAGTCTACGTTTTG 59.163 47.826 14.48 7.79 46.52 2.44
169 170 2.763249 ACGACGAGTCTACGTTTTGT 57.237 45.000 0.00 0.00 46.52 2.83
170 171 3.878086 ACGACGAGTCTACGTTTTGTA 57.122 42.857 0.00 0.00 46.52 2.41
171 172 4.209452 ACGACGAGTCTACGTTTTGTAA 57.791 40.909 0.00 0.00 46.52 2.41
172 173 4.787598 ACGACGAGTCTACGTTTTGTAAT 58.212 39.130 0.00 0.00 46.52 1.89
173 174 5.927030 ACGACGAGTCTACGTTTTGTAATA 58.073 37.500 0.00 0.00 46.52 0.98
174 175 6.370593 ACGACGAGTCTACGTTTTGTAATAA 58.629 36.000 0.00 0.00 46.52 1.40
175 176 6.855914 ACGACGAGTCTACGTTTTGTAATAAA 59.144 34.615 0.00 0.00 46.52 1.40
176 177 7.378461 ACGACGAGTCTACGTTTTGTAATAAAA 59.622 33.333 0.00 0.00 46.52 1.52
177 178 8.368126 CGACGAGTCTACGTTTTGTAATAAAAT 58.632 33.333 0.00 0.00 46.52 1.82
211 212 3.904136 AATTTCTGCAACAAGACCTCG 57.096 42.857 0.00 0.00 0.00 4.63
212 213 1.593196 TTTCTGCAACAAGACCTCGG 58.407 50.000 0.00 0.00 0.00 4.63
213 214 0.468226 TTCTGCAACAAGACCTCGGT 59.532 50.000 0.00 0.00 0.00 4.69
214 215 0.468226 TCTGCAACAAGACCTCGGTT 59.532 50.000 0.00 0.00 0.00 4.44
215 216 0.588252 CTGCAACAAGACCTCGGTTG 59.412 55.000 0.00 0.00 43.53 3.77
217 218 2.701587 CAACAAGACCTCGGTTGCA 58.298 52.632 0.00 0.00 35.95 4.08
218 219 1.021202 CAACAAGACCTCGGTTGCAA 58.979 50.000 0.00 0.00 35.95 4.08
219 220 1.403679 CAACAAGACCTCGGTTGCAAA 59.596 47.619 0.00 0.00 35.95 3.68
220 221 1.757682 ACAAGACCTCGGTTGCAAAA 58.242 45.000 0.00 0.00 0.00 2.44
221 222 2.096248 ACAAGACCTCGGTTGCAAAAA 58.904 42.857 0.00 0.00 0.00 1.94
269 270 6.370433 AAAAAGTGCAACAAAACAACTGTT 57.630 29.167 0.00 0.00 41.43 3.16
276 277 5.588568 CAACAAAACAACTGTTGCAGAAA 57.411 34.783 19.82 0.00 45.07 2.52
277 278 5.983475 CAACAAAACAACTGTTGCAGAAAA 58.017 33.333 19.82 0.00 45.07 2.29
278 279 6.425504 CAACAAAACAACTGTTGCAGAAAAA 58.574 32.000 19.82 0.00 45.07 1.94
279 280 6.799926 ACAAAACAACTGTTGCAGAAAAAT 57.200 29.167 19.82 0.00 38.44 1.82
280 281 7.200778 ACAAAACAACTGTTGCAGAAAAATT 57.799 28.000 19.82 2.00 38.44 1.82
281 282 7.297391 ACAAAACAACTGTTGCAGAAAAATTC 58.703 30.769 19.82 0.00 38.44 2.17
282 283 7.173047 ACAAAACAACTGTTGCAGAAAAATTCT 59.827 29.630 19.82 0.00 38.29 2.40
294 295 5.859205 AGAAAAATTCTGCAACAAGACCT 57.141 34.783 0.00 0.00 38.91 3.85
295 296 6.959639 AGAAAAATTCTGCAACAAGACCTA 57.040 33.333 0.00 0.00 38.91 3.08
296 297 7.530426 AGAAAAATTCTGCAACAAGACCTAT 57.470 32.000 0.00 0.00 38.91 2.57
297 298 7.373493 AGAAAAATTCTGCAACAAGACCTATG 58.627 34.615 0.00 0.00 38.91 2.23
298 299 6.655078 AAAATTCTGCAACAAGACCTATGT 57.345 33.333 0.00 0.00 0.00 2.29
299 300 6.655078 AAATTCTGCAACAAGACCTATGTT 57.345 33.333 0.00 0.00 41.50 2.71
309 310 7.759489 AACAAGACCTATGTTGCAGAAATAA 57.241 32.000 0.00 0.00 39.43 1.40
310 311 7.944729 ACAAGACCTATGTTGCAGAAATAAT 57.055 32.000 0.00 0.00 32.28 1.28
311 312 7.989826 ACAAGACCTATGTTGCAGAAATAATC 58.010 34.615 0.00 0.00 32.28 1.75
312 313 7.067494 ACAAGACCTATGTTGCAGAAATAATCC 59.933 37.037 0.00 0.00 32.28 3.01
313 314 6.904626 AGACCTATGTTGCAGAAATAATCCT 58.095 36.000 0.00 0.00 0.00 3.24
314 315 6.769822 AGACCTATGTTGCAGAAATAATCCTG 59.230 38.462 0.00 0.00 0.00 3.86
324 325 5.644644 CAGAAATAATCCTGCAACAAGACC 58.355 41.667 0.00 0.00 0.00 3.85
325 326 4.706962 AGAAATAATCCTGCAACAAGACCC 59.293 41.667 0.00 0.00 0.00 4.46
326 327 2.107950 TAATCCTGCAACAAGACCCG 57.892 50.000 0.00 0.00 0.00 5.28
327 328 0.110486 AATCCTGCAACAAGACCCGT 59.890 50.000 0.00 0.00 0.00 5.28
328 329 0.606401 ATCCTGCAACAAGACCCGTG 60.606 55.000 0.00 0.00 0.00 4.94
329 330 1.525995 CCTGCAACAAGACCCGTGT 60.526 57.895 0.00 0.00 0.00 4.49
330 331 1.101049 CCTGCAACAAGACCCGTGTT 61.101 55.000 0.00 0.00 39.79 3.32
333 334 2.102554 CAACAAGACCCGTGTTGCA 58.897 52.632 11.46 0.00 46.63 4.08
334 335 0.029300 CAACAAGACCCGTGTTGCAG 59.971 55.000 11.46 0.00 46.63 4.41
335 336 0.107410 AACAAGACCCGTGTTGCAGA 60.107 50.000 4.75 0.00 37.80 4.26
336 337 0.107410 ACAAGACCCGTGTTGCAGAA 60.107 50.000 4.75 0.00 37.36 3.02
337 338 0.588252 CAAGACCCGTGTTGCAGAAG 59.412 55.000 0.00 0.00 0.00 2.85
338 339 0.180406 AAGACCCGTGTTGCAGAAGT 59.820 50.000 0.00 0.00 0.00 3.01
339 340 1.045407 AGACCCGTGTTGCAGAAGTA 58.955 50.000 0.00 0.00 0.00 2.24
340 341 1.414919 AGACCCGTGTTGCAGAAGTAA 59.585 47.619 0.00 0.00 0.00 2.24
341 342 2.038557 AGACCCGTGTTGCAGAAGTAAT 59.961 45.455 0.00 0.00 0.00 1.89
342 343 2.415512 GACCCGTGTTGCAGAAGTAATC 59.584 50.000 0.00 0.00 0.00 1.75
343 344 1.737793 CCCGTGTTGCAGAAGTAATCC 59.262 52.381 0.00 0.00 0.00 3.01
344 345 2.615493 CCCGTGTTGCAGAAGTAATCCT 60.615 50.000 0.00 0.00 0.00 3.24
345 346 2.416547 CCGTGTTGCAGAAGTAATCCTG 59.583 50.000 0.00 0.00 0.00 3.86
353 354 4.691860 CAGAAGTAATCCTGCAACAAGG 57.308 45.455 0.00 0.00 38.84 3.61
354 355 3.084786 AGAAGTAATCCTGCAACAAGGC 58.915 45.455 0.00 0.00 37.24 4.35
355 356 1.839424 AGTAATCCTGCAACAAGGCC 58.161 50.000 0.00 0.00 37.24 5.19
356 357 1.355720 AGTAATCCTGCAACAAGGCCT 59.644 47.619 0.00 0.00 37.24 5.19
357 358 1.474077 GTAATCCTGCAACAAGGCCTG 59.526 52.381 5.69 2.82 37.24 4.85
358 359 0.178953 AATCCTGCAACAAGGCCTGT 60.179 50.000 5.69 3.60 41.27 4.00
359 360 0.896940 ATCCTGCAACAAGGCCTGTG 60.897 55.000 5.69 9.84 38.67 3.66
360 361 1.829533 CCTGCAACAAGGCCTGTGT 60.830 57.895 5.69 10.57 38.67 3.72
361 362 1.394266 CCTGCAACAAGGCCTGTGTT 61.394 55.000 20.79 20.79 38.67 3.32
363 364 4.736165 CAACAAGGCCTGTGTTGC 57.264 55.556 30.45 0.00 46.63 4.17
364 365 1.815196 CAACAAGGCCTGTGTTGCA 59.185 52.632 30.45 0.00 46.63 4.08
365 366 0.175302 CAACAAGGCCTGTGTTGCAA 59.825 50.000 30.45 0.00 46.63 4.08
366 367 1.122227 AACAAGGCCTGTGTTGCAAT 58.878 45.000 23.84 7.58 38.67 3.56
367 368 1.993956 ACAAGGCCTGTGTTGCAATA 58.006 45.000 5.69 0.00 36.69 1.90
368 369 2.315176 ACAAGGCCTGTGTTGCAATAA 58.685 42.857 5.69 0.00 36.69 1.40
369 370 2.297033 ACAAGGCCTGTGTTGCAATAAG 59.703 45.455 5.69 0.45 36.69 1.73
370 371 1.549203 AGGCCTGTGTTGCAATAAGG 58.451 50.000 3.11 16.62 0.00 2.69
371 372 1.075374 AGGCCTGTGTTGCAATAAGGA 59.925 47.619 22.34 1.12 0.00 3.36
372 373 1.892474 GGCCTGTGTTGCAATAAGGAA 59.108 47.619 22.34 0.54 0.00 3.36
373 374 2.094545 GGCCTGTGTTGCAATAAGGAAG 60.095 50.000 22.34 8.62 0.00 3.46
374 375 2.094545 GCCTGTGTTGCAATAAGGAAGG 60.095 50.000 22.34 15.94 0.00 3.46
375 376 2.094545 CCTGTGTTGCAATAAGGAAGGC 60.095 50.000 16.15 0.00 0.00 4.35
376 377 2.557924 CTGTGTTGCAATAAGGAAGGCA 59.442 45.455 0.59 0.00 0.00 4.75
377 378 2.295909 TGTGTTGCAATAAGGAAGGCAC 59.704 45.455 0.59 3.15 35.74 5.01
378 379 1.539388 TGTTGCAATAAGGAAGGCACG 59.461 47.619 0.59 0.00 35.74 5.34
379 380 1.539827 GTTGCAATAAGGAAGGCACGT 59.460 47.619 0.59 0.00 35.74 4.49
380 381 1.448985 TGCAATAAGGAAGGCACGTC 58.551 50.000 0.00 0.00 35.71 4.34
394 395 2.395690 CGTCCGAACGCTCAATGC 59.604 61.111 0.00 0.00 42.82 3.56
424 425 2.288948 GCCATTGTGTTGCAGGATTTGA 60.289 45.455 0.00 0.00 0.00 2.69
471 472 1.296867 CGGTAGCAGCATTTTCGCG 60.297 57.895 0.00 0.00 36.85 5.87
518 519 0.034767 CAGGTGTGTCTGGATGGCAT 60.035 55.000 0.00 0.00 30.58 4.40
524 525 2.504996 TGTGTCTGGATGGCATACATGA 59.495 45.455 13.90 10.05 40.72 3.07
525 526 3.136992 TGTGTCTGGATGGCATACATGAT 59.863 43.478 13.90 0.00 40.72 2.45
549 550 2.325583 TGTTTCTGAAACAGAGCGGT 57.674 45.000 27.14 0.00 45.79 5.68
570 571 0.370273 GTTGCAGGAATAGTCACGCG 59.630 55.000 3.53 3.53 0.00 6.01
586 587 2.530497 GCGCGCGGTAATTGGATCA 61.530 57.895 33.06 0.00 0.00 2.92
589 590 1.512926 GCGCGGTAATTGGATCAGAT 58.487 50.000 8.83 0.00 0.00 2.90
603 604 1.077501 CAGATGGTTGTCGGGGCAT 60.078 57.895 0.00 0.00 0.00 4.40
604 605 1.077501 AGATGGTTGTCGGGGCATG 60.078 57.895 0.00 0.00 0.00 4.06
608 609 0.329931 TGGTTGTCGGGGCATGTATT 59.670 50.000 0.00 0.00 0.00 1.89
616 617 1.101049 GGGGCATGTATTGGACGGTG 61.101 60.000 0.00 0.00 0.00 4.94
633 647 1.084289 GTGGTACAGGCGAAACATCC 58.916 55.000 0.00 0.00 41.80 3.51
823 837 4.980903 CCGCAACACCGCAGCAAC 62.981 66.667 0.00 0.00 0.00 4.17
1238 1530 2.111878 CATCCATCCGCCCTCCAC 59.888 66.667 0.00 0.00 0.00 4.02
1250 1542 1.852626 CCTCCACCCCCAGAGGTTT 60.853 63.158 0.00 0.00 44.01 3.27
1284 1576 1.209128 CGATCGTATCACTGGCAACC 58.791 55.000 7.03 0.00 0.00 3.77
1307 1605 5.076182 CAGCTAGGGATTCTAGAGTCATGA 58.924 45.833 16.22 0.00 46.48 3.07
1308 1606 5.183713 CAGCTAGGGATTCTAGAGTCATGAG 59.816 48.000 16.22 10.27 46.48 2.90
1313 1611 4.898861 GGGATTCTAGAGTCATGAGACCTT 59.101 45.833 16.22 0.00 46.15 3.50
1358 2521 0.815095 GGATTCCCCGTGCGATTTTT 59.185 50.000 0.00 0.00 0.00 1.94
1368 2531 1.131504 GTGCGATTTTTATCCCGTGCA 59.868 47.619 0.00 0.00 0.00 4.57
1372 2535 3.485743 GCGATTTTTATCCCGTGCATTTC 59.514 43.478 0.00 0.00 0.00 2.17
1373 2536 4.041723 CGATTTTTATCCCGTGCATTTCC 58.958 43.478 0.00 0.00 0.00 3.13
1461 2631 3.425359 CGTGAATGATTCTGCCAGTGTTC 60.425 47.826 6.73 0.00 0.00 3.18
1496 2666 2.549329 GCGTGATGGTATGATGATTGCA 59.451 45.455 0.00 0.00 0.00 4.08
1542 2719 0.378257 ACTCTGCGCACTGTTTTGTG 59.622 50.000 5.66 0.00 40.62 3.33
1568 2745 4.888917 GACCTTATAGAGTCCATTGCTCC 58.111 47.826 0.00 0.00 33.69 4.70
1699 2886 4.057406 TGTTGTGCTCTTTGGGAAAATG 57.943 40.909 0.00 0.00 0.00 2.32
1701 2888 1.000385 TGTGCTCTTTGGGAAAATGCG 60.000 47.619 0.00 0.00 0.00 4.73
1717 2904 2.293677 TGCGTAGTCATCATGTGTCC 57.706 50.000 0.00 0.00 0.00 4.02
1718 2905 1.134818 TGCGTAGTCATCATGTGTCCC 60.135 52.381 0.00 0.00 0.00 4.46
2277 3509 8.439964 ACTACCCTTAAAGTAGTTCCACAATA 57.560 34.615 10.71 0.00 46.41 1.90
2552 3784 5.715753 CACTACCTTACTACCCTCTCTTTGT 59.284 44.000 0.00 0.00 0.00 2.83
2639 3871 5.121298 CACATTCATCTATACTCCCATTGCG 59.879 44.000 0.00 0.00 0.00 4.85
2658 3890 2.833794 CGTTCCACTCTTGAACAAGGA 58.166 47.619 13.46 2.61 41.70 3.36
2677 3909 5.234466 AGGACTGAGAAGCAAATGTAACT 57.766 39.130 0.00 0.00 0.00 2.24
2702 3934 6.855763 TTGATTGGGTCAAATCAAGCTAAT 57.144 33.333 8.89 0.00 46.51 1.73
2705 3937 4.314522 TGGGTCAAATCAAGCTAATGGA 57.685 40.909 0.00 0.00 0.00 3.41
2745 3977 1.069668 GGTCTACCGTGGTGTTTGAGT 59.930 52.381 0.72 0.00 0.00 3.41
3243 4826 6.432783 ACCAAAGCAGTGCATTGTTATAGTAA 59.567 34.615 26.28 0.00 35.80 2.24
3679 5340 5.280945 CACCAGTAAGTGTTGAATTGTTGG 58.719 41.667 0.00 0.00 32.89 3.77
3937 5829 1.200948 CTTTCTTGCAGCTACCTTGCC 59.799 52.381 0.00 0.00 40.81 4.52
4332 6677 2.104963 GGTGAGGGTGCTATTCCTAAGG 59.895 54.545 0.00 0.00 32.74 2.69
4652 6999 3.361786 ACTACCTTTTTGTTGTGCAGGT 58.638 40.909 0.00 0.00 0.00 4.00
4904 7251 3.112263 ACTCGGGGTGATCCAAGATTAA 58.888 45.455 0.00 0.00 37.22 1.40
4997 7344 5.498393 TGGATTATGGCGGTTAAGTACAAA 58.502 37.500 0.00 0.00 0.00 2.83
5007 7354 8.256605 TGGCGGTTAAGTACAAATGTATAACTA 58.743 33.333 12.97 1.76 31.57 2.24
5008 7355 9.097257 GGCGGTTAAGTACAAATGTATAACTAA 57.903 33.333 12.97 2.19 31.57 2.24
5127 7475 4.516698 GGGATATGAATTGTGCACTGGTAG 59.483 45.833 19.41 0.00 0.00 3.18
5366 7714 4.557205 ACTTCTCGTAAGTTGTAAGCCTG 58.443 43.478 0.92 0.00 39.48 4.85
5601 7952 5.983118 CCAAAATTGACCAGTAACCAAGTTC 59.017 40.000 0.00 0.00 29.49 3.01
5791 8142 5.233902 GTCAGATTCTACTTGCAGCATGTAG 59.766 44.000 30.05 30.05 40.87 2.74
5989 8340 9.907576 TGCGATTTTTGTTGTTTACTTAATTTG 57.092 25.926 0.00 0.00 0.00 2.32
6026 8377 8.768955 CAACTAATGCAGGTCTTCATATTAGTC 58.231 37.037 0.00 0.00 39.23 2.59
6042 8393 4.642445 TTAGTCGCAAGGTATCATTCGA 57.358 40.909 0.00 0.00 38.47 3.71
6044 8395 3.643763 AGTCGCAAGGTATCATTCGATC 58.356 45.455 0.00 0.00 38.47 3.69
6142 8493 6.959671 TGTTCCATTTGTCAAACTTGTTTC 57.040 33.333 0.00 0.00 0.00 2.78
6173 8529 3.124560 GCGCCTTACTAGGTTTCTCATC 58.875 50.000 0.00 0.00 44.00 2.92
6220 8576 9.836864 AATGTCTTCTCTTGTGCATACATATTA 57.163 29.630 0.00 0.00 36.53 0.98
6295 8651 5.068234 TCTGGTATAGCGGTATGTATTGC 57.932 43.478 17.16 0.00 0.00 3.56
6313 8669 2.448453 TGCCATCAAACATGCTCATCA 58.552 42.857 0.00 0.00 0.00 3.07
6331 8687 9.227777 TGCTCATCAGATCATCAAATAAATAGG 57.772 33.333 0.00 0.00 0.00 2.57
6369 8729 1.610522 CTTGCTGTTTCCTGTTCAGGG 59.389 52.381 17.37 3.81 0.00 4.45
6432 8792 0.179000 ATGATCTTCCTGACGGGCAC 59.821 55.000 0.00 0.00 34.39 5.01
6558 8918 2.108250 ACTGCAACATCCCAGGTACTTT 59.892 45.455 0.00 0.00 34.60 2.66
6618 8978 4.864726 ACAAGTAGTCGGGGATAGTAACT 58.135 43.478 0.00 0.00 0.00 2.24
6626 8986 4.516698 GTCGGGGATAGTAACTGTTATCGA 59.483 45.833 3.23 0.00 0.00 3.59
6722 9092 1.153549 CTGGCGTAGAGGGTCTTGC 60.154 63.158 0.00 0.00 0.00 4.01
6729 9099 0.909610 TAGAGGGTCTTGCAGGTGGG 60.910 60.000 0.00 0.00 0.00 4.61
6835 9205 7.469043 GCCTCATATGTTATTCAAATGTGCTGA 60.469 37.037 1.90 0.00 0.00 4.26
6852 9222 8.995027 ATGTGCTGAATTTAATGTCCCTATTA 57.005 30.769 0.00 0.00 0.00 0.98
6853 9223 8.815565 TGTGCTGAATTTAATGTCCCTATTAA 57.184 30.769 0.00 0.00 32.31 1.40
6854 9224 9.249053 TGTGCTGAATTTAATGTCCCTATTAAA 57.751 29.630 0.00 0.00 43.02 1.52
6917 9290 4.531854 TCCTTGAAGAATGTTCACAACCA 58.468 39.130 0.00 0.00 0.00 3.67
7007 9381 3.788797 GCTTCCGTTCACTGTTTGACTTG 60.789 47.826 0.00 0.00 32.26 3.16
7008 9382 2.980568 TCCGTTCACTGTTTGACTTGT 58.019 42.857 0.00 0.00 32.26 3.16
7012 9386 5.587043 TCCGTTCACTGTTTGACTTGTATTT 59.413 36.000 0.00 0.00 32.26 1.40
7036 9410 4.697352 GTCCTTGTACATTTCACTGCTCAT 59.303 41.667 0.00 0.00 0.00 2.90
7043 9417 8.109705 TGTACATTTCACTGCTCATGTAAAAT 57.890 30.769 0.00 0.00 34.64 1.82
7044 9418 9.225436 TGTACATTTCACTGCTCATGTAAAATA 57.775 29.630 0.00 0.00 34.64 1.40
7047 9421 8.408601 ACATTTCACTGCTCATGTAAAATATCC 58.591 33.333 0.00 0.00 0.00 2.59
7048 9422 6.942532 TTCACTGCTCATGTAAAATATCCC 57.057 37.500 0.00 0.00 0.00 3.85
7049 9423 6.000246 TCACTGCTCATGTAAAATATCCCA 58.000 37.500 0.00 0.00 0.00 4.37
7069 9443 3.249080 CCAAGTATTACCGGCGGTTTATG 59.751 47.826 38.73 24.27 37.09 1.90
7072 9446 4.964593 AGTATTACCGGCGGTTTATGATT 58.035 39.130 38.73 16.93 37.09 2.57
7148 9522 2.220653 TGCAGGAGAATTTTGAGGGG 57.779 50.000 0.00 0.00 0.00 4.79
7252 9633 4.256920 AGAAACTATGCTGCTTGTTCGAT 58.743 39.130 0.00 0.00 0.00 3.59
7263 9644 5.164119 GCTGCTTGTTCGATTTGAATTCTTG 60.164 40.000 7.05 0.00 39.21 3.02
7278 9659 1.878953 TCTTGTTCAAGGAGTTCCGC 58.121 50.000 11.82 0.00 42.08 5.54
7387 9768 0.601046 TGTCTTGCAGCACTTCCTCG 60.601 55.000 0.00 0.00 0.00 4.63
7453 9834 1.920574 CAACACGAGGACGATGATGAC 59.079 52.381 0.00 0.00 42.66 3.06
7554 9936 7.225145 TCAAGTGAAAATGAGCCAAAATTTGAG 59.775 33.333 7.37 0.00 0.00 3.02
7675 10057 5.679734 ATTCATTATCATCCGCAAGACAC 57.320 39.130 0.00 0.00 43.02 3.67
7771 10153 8.609617 TCATATCGTAAATGATATTCCCTCCT 57.390 34.615 2.55 0.00 39.06 3.69
7775 10157 4.929808 CGTAAATGATATTCCCTCCTTCCG 59.070 45.833 0.00 0.00 0.00 4.30
7776 10158 4.373156 AAATGATATTCCCTCCTTCCGG 57.627 45.455 0.00 0.00 0.00 5.14
7793 10175 7.495055 TCCTTCCGGTAATATAAGAGTGTTTC 58.505 38.462 0.00 0.00 0.00 2.78
7794 10176 6.704937 CCTTCCGGTAATATAAGAGTGTTTCC 59.295 42.308 0.00 0.00 0.00 3.13
7835 10217 9.851043 GTCAAAAACGCTCTTATATTATGAGAC 57.149 33.333 0.00 0.00 33.20 3.36
7842 10224 5.652891 GCTCTTATATTATGAGACGGAGGGA 59.347 44.000 0.00 0.00 33.20 4.20
7937 10480 9.959749 TTTGAGTTTTTCTTGGAACATATACAC 57.040 29.630 0.00 0.00 39.30 2.90
7951 10494 7.064134 GGAACATATACACGAGATTTTCACACA 59.936 37.037 0.00 0.00 0.00 3.72
7955 10498 8.820933 CATATACACGAGATTTTCACACAATCT 58.179 33.333 0.00 0.00 42.57 2.40
7958 10501 3.814842 ACGAGATTTTCACACAATCTGCA 59.185 39.130 0.00 0.00 40.43 4.41
7959 10502 4.083643 ACGAGATTTTCACACAATCTGCAG 60.084 41.667 7.63 7.63 40.43 4.41
8000 10544 4.870426 AGTAATACTGCACCGAATGAGTTG 59.130 41.667 0.00 0.00 0.00 3.16
8092 10638 2.221169 TCCTTGCGCATATTAAGGCTG 58.779 47.619 18.36 0.00 40.57 4.85
8098 10644 1.193203 CGCATATTAAGGCTGTGCTCG 59.807 52.381 0.00 0.00 33.82 5.03
8103 10649 5.637810 GCATATTAAGGCTGTGCTCGTTATA 59.362 40.000 0.00 0.00 33.25 0.98
8164 10711 1.103398 ACAGCAGGTGAAGTGTTGGC 61.103 55.000 6.61 0.00 30.91 4.52
8248 10796 1.270274 ACCGGTTTTTGGCGGATTTAC 59.730 47.619 0.00 0.00 0.00 2.01
8249 10797 1.269998 CCGGTTTTTGGCGGATTTACA 59.730 47.619 0.00 0.00 0.00 2.41
8251 10799 2.321263 GGTTTTTGGCGGATTTACACG 58.679 47.619 0.00 0.00 0.00 4.49
8293 10842 2.815211 CCGCCACATGTCAGACCG 60.815 66.667 0.00 0.00 0.00 4.79
8341 10890 4.569719 AGGGACATTAGGGTAGTTGTTG 57.430 45.455 0.00 0.00 0.00 3.33
8348 10897 1.826385 AGGGTAGTTGTTGAGCATGC 58.174 50.000 10.51 10.51 0.00 4.06
8450 11463 4.526650 TCCAGTTGAGAGTATGCAAGTACA 59.473 41.667 0.00 0.00 0.00 2.90
8451 11464 4.867047 CCAGTTGAGAGTATGCAAGTACAG 59.133 45.833 0.00 0.00 0.00 2.74
8452 11465 5.473931 CAGTTGAGAGTATGCAAGTACAGT 58.526 41.667 0.00 0.00 0.00 3.55
8453 11466 6.350194 CCAGTTGAGAGTATGCAAGTACAGTA 60.350 42.308 0.00 0.00 0.00 2.74
8454 11467 6.528423 CAGTTGAGAGTATGCAAGTACAGTAC 59.472 42.308 2.05 2.05 0.00 2.73
8459 11472 6.424883 AGAGTATGCAAGTACAGTACCTACT 58.575 40.000 7.13 7.05 36.90 2.57
8479 11492 6.316390 CCTACTAGTAACATTTTGCCTTCCTG 59.684 42.308 3.76 0.00 0.00 3.86
8505 11518 0.974383 AGGTACCAGTTCTGGGTTCG 59.026 55.000 20.88 0.00 39.85 3.95
8699 11987 6.811253 ACGTTGCCATCTTTCAGTTAATAA 57.189 33.333 0.00 0.00 0.00 1.40
8731 12019 1.822371 TGCTGATGTTGGCTCGTACTA 59.178 47.619 0.00 0.00 0.00 1.82
8733 12021 2.159226 GCTGATGTTGGCTCGTACTAGT 60.159 50.000 0.00 0.00 0.00 2.57
8734 12022 3.066342 GCTGATGTTGGCTCGTACTAGTA 59.934 47.826 0.00 0.00 0.00 1.82
8736 12024 4.267536 TGATGTTGGCTCGTACTAGTACT 58.732 43.478 26.36 8.17 34.04 2.73
8741 12029 2.681848 TGGCTCGTACTAGTACTGAAGC 59.318 50.000 27.17 27.17 34.04 3.86
8879 12224 0.462937 TTGTGTGTCCCTGTTGGTCG 60.463 55.000 0.00 0.00 34.77 4.79
8924 12269 0.041576 GCGGTTGACACGAACCTTTC 60.042 55.000 0.00 0.00 42.97 2.62
8956 12301 2.891580 GGGATCTAGGTGATGCTTCGTA 59.108 50.000 0.00 0.00 42.27 3.43
9108 12459 1.880027 CGTGGAAGGTTCTTTCCCTTG 59.120 52.381 10.42 0.00 44.93 3.61
9127 12487 3.071874 TGCAAGTAGGATCCACAAAGG 57.928 47.619 15.82 0.00 39.47 3.11
9136 12496 3.264450 AGGATCCACAAAGGGAGTTAGTG 59.736 47.826 15.82 0.00 41.08 2.74
9144 12504 2.005370 AGGGAGTTAGTGACCGTTGA 57.995 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.468226 GATCCGCTGGGTGATGGTAA 59.532 55.000 1.56 0.00 33.83 2.85
1 2 1.744320 CGATCCGCTGGGTGATGGTA 61.744 60.000 1.56 0.00 33.83 3.25
2 3 2.911143 GATCCGCTGGGTGATGGT 59.089 61.111 1.56 0.00 33.83 3.55
3 4 2.280389 CGATCCGCTGGGTGATGG 60.280 66.667 1.56 0.00 33.83 3.51
36 37 3.721706 GTGAGGCAGGGGAGGTGG 61.722 72.222 0.00 0.00 0.00 4.61
37 38 2.930019 TGTGAGGCAGGGGAGGTG 60.930 66.667 0.00 0.00 0.00 4.00
38 39 2.930562 GTGTGAGGCAGGGGAGGT 60.931 66.667 0.00 0.00 0.00 3.85
39 40 4.087892 CGTGTGAGGCAGGGGAGG 62.088 72.222 0.00 0.00 0.00 4.30
40 41 3.314331 ACGTGTGAGGCAGGGGAG 61.314 66.667 0.00 0.00 37.30 4.30
41 42 3.625897 CACGTGTGAGGCAGGGGA 61.626 66.667 7.58 0.00 38.57 4.81
42 43 3.883744 GACACGTGTGAGGCAGGGG 62.884 68.421 28.82 0.00 41.76 4.79
43 44 2.357517 GACACGTGTGAGGCAGGG 60.358 66.667 28.82 0.00 37.30 4.45
44 45 2.357517 GGACACGTGTGAGGCAGG 60.358 66.667 28.82 0.00 38.79 4.85
45 46 2.357517 GGGACACGTGTGAGGCAG 60.358 66.667 28.82 0.00 0.00 4.85
46 47 3.157949 TGGGACACGTGTGAGGCA 61.158 61.111 28.82 0.00 0.00 4.75
47 48 2.357517 CTGGGACACGTGTGAGGC 60.358 66.667 28.82 11.54 0.00 4.70
48 49 1.300931 CACTGGGACACGTGTGAGG 60.301 63.158 28.82 15.03 34.46 3.86
49 50 0.319040 CTCACTGGGACACGTGTGAG 60.319 60.000 28.82 20.35 46.45 3.51
50 51 0.753848 TCTCACTGGGACACGTGTGA 60.754 55.000 28.82 14.83 38.18 3.58
51 52 0.318441 ATCTCACTGGGACACGTGTG 59.682 55.000 28.82 14.32 38.18 3.82
52 53 1.000955 GAATCTCACTGGGACACGTGT 59.999 52.381 23.64 23.64 38.18 4.49
53 54 1.673033 GGAATCTCACTGGGACACGTG 60.673 57.143 15.48 15.48 38.29 4.49
54 55 0.608640 GGAATCTCACTGGGACACGT 59.391 55.000 0.00 0.00 0.00 4.49
55 56 0.608130 TGGAATCTCACTGGGACACG 59.392 55.000 0.00 0.00 0.00 4.49
56 57 1.347707 TGTGGAATCTCACTGGGACAC 59.652 52.381 0.00 0.00 38.40 3.67
57 58 1.347707 GTGTGGAATCTCACTGGGACA 59.652 52.381 0.00 0.00 38.40 4.02
58 59 1.347707 TGTGTGGAATCTCACTGGGAC 59.652 52.381 9.44 0.00 38.00 4.46
59 60 1.347707 GTGTGTGGAATCTCACTGGGA 59.652 52.381 9.44 0.00 38.00 4.37
60 61 1.349026 AGTGTGTGGAATCTCACTGGG 59.651 52.381 9.44 0.00 39.57 4.45
61 62 2.847327 AGTGTGTGGAATCTCACTGG 57.153 50.000 9.44 0.00 39.57 4.00
62 63 4.161189 AGGATAGTGTGTGGAATCTCACTG 59.839 45.833 10.33 0.00 40.66 3.66
63 64 4.357325 AGGATAGTGTGTGGAATCTCACT 58.643 43.478 0.00 0.00 42.29 3.41
64 65 4.744795 AGGATAGTGTGTGGAATCTCAC 57.255 45.455 3.22 3.22 37.75 3.51
65 66 5.013079 ACAAAGGATAGTGTGTGGAATCTCA 59.987 40.000 0.00 0.00 0.00 3.27
66 67 5.491982 ACAAAGGATAGTGTGTGGAATCTC 58.508 41.667 0.00 0.00 0.00 2.75
67 68 5.491982 GACAAAGGATAGTGTGTGGAATCT 58.508 41.667 0.00 0.00 0.00 2.40
68 69 4.330074 CGACAAAGGATAGTGTGTGGAATC 59.670 45.833 0.00 0.00 0.00 2.52
69 70 4.020573 TCGACAAAGGATAGTGTGTGGAAT 60.021 41.667 0.00 0.00 0.00 3.01
70 71 3.322541 TCGACAAAGGATAGTGTGTGGAA 59.677 43.478 0.00 0.00 0.00 3.53
71 72 2.894765 TCGACAAAGGATAGTGTGTGGA 59.105 45.455 0.00 0.00 0.00 4.02
72 73 3.313012 TCGACAAAGGATAGTGTGTGG 57.687 47.619 0.00 0.00 0.00 4.17
73 74 3.121279 CGTTCGACAAAGGATAGTGTGTG 59.879 47.826 0.00 0.00 0.00 3.82
74 75 3.314553 CGTTCGACAAAGGATAGTGTGT 58.685 45.455 0.00 0.00 0.00 3.72
75 76 2.092211 GCGTTCGACAAAGGATAGTGTG 59.908 50.000 0.00 0.00 0.00 3.82
76 77 2.288579 TGCGTTCGACAAAGGATAGTGT 60.289 45.455 0.00 0.00 0.00 3.55
77 78 2.333926 TGCGTTCGACAAAGGATAGTG 58.666 47.619 0.00 0.00 0.00 2.74
78 79 2.736144 TGCGTTCGACAAAGGATAGT 57.264 45.000 0.00 0.00 0.00 2.12
79 80 4.330074 AGAAATGCGTTCGACAAAGGATAG 59.670 41.667 0.00 0.00 41.52 2.08
80 81 4.092821 CAGAAATGCGTTCGACAAAGGATA 59.907 41.667 0.00 0.00 41.52 2.59
81 82 3.074412 AGAAATGCGTTCGACAAAGGAT 58.926 40.909 0.00 0.00 41.52 3.24
82 83 2.223144 CAGAAATGCGTTCGACAAAGGA 59.777 45.455 0.00 0.00 41.52 3.36
83 84 2.574322 CAGAAATGCGTTCGACAAAGG 58.426 47.619 0.00 0.00 41.52 3.11
84 85 1.971962 GCAGAAATGCGTTCGACAAAG 59.028 47.619 0.00 0.00 41.52 2.77
85 86 1.332065 TGCAGAAATGCGTTCGACAAA 59.668 42.857 0.00 0.00 41.52 2.83
86 87 0.940833 TGCAGAAATGCGTTCGACAA 59.059 45.000 0.00 0.00 41.52 3.18
87 88 0.940833 TTGCAGAAATGCGTTCGACA 59.059 45.000 0.00 0.00 41.52 4.35
88 89 1.318251 GTTGCAGAAATGCGTTCGAC 58.682 50.000 0.00 0.00 41.52 4.20
89 90 0.940833 TGTTGCAGAAATGCGTTCGA 59.059 45.000 0.00 0.00 41.52 3.71
90 91 1.069973 TCTGTTGCAGAAATGCGTTCG 60.070 47.619 0.00 0.00 41.52 3.95
91 92 2.686558 TCTGTTGCAGAAATGCGTTC 57.313 45.000 0.00 0.00 37.57 3.95
99 100 2.042686 ACACAGCTTCTGTTGCAGAA 57.957 45.000 10.61 10.61 46.50 3.02
100 101 2.042686 AACACAGCTTCTGTTGCAGA 57.957 45.000 5.84 0.00 42.59 4.26
101 102 2.357009 AGAAACACAGCTTCTGTTGCAG 59.643 45.455 12.68 0.00 42.59 4.41
102 103 2.097954 CAGAAACACAGCTTCTGTTGCA 59.902 45.455 12.68 0.00 42.59 4.08
103 104 2.355756 TCAGAAACACAGCTTCTGTTGC 59.644 45.455 11.22 7.82 46.53 4.17
104 105 4.621068 TTCAGAAACACAGCTTCTGTTG 57.379 40.909 11.22 0.18 46.53 3.33
105 106 4.458989 TGTTTCAGAAACACAGCTTCTGTT 59.541 37.500 22.53 6.50 45.79 3.16
106 107 4.009675 TGTTTCAGAAACACAGCTTCTGT 58.990 39.130 22.53 0.55 45.79 3.41
107 108 4.621068 TGTTTCAGAAACACAGCTTCTG 57.379 40.909 22.53 6.08 45.79 3.02
117 118 7.406553 TGCAACGCTATATATGTTTCAGAAAC 58.593 34.615 17.85 17.85 41.73 2.78
118 119 7.546778 TGCAACGCTATATATGTTTCAGAAA 57.453 32.000 0.00 0.00 0.00 2.52
119 120 7.546778 TTGCAACGCTATATATGTTTCAGAA 57.453 32.000 0.00 0.00 0.00 3.02
120 121 7.307930 CCATTGCAACGCTATATATGTTTCAGA 60.308 37.037 0.00 0.00 0.00 3.27
121 122 6.798476 CCATTGCAACGCTATATATGTTTCAG 59.202 38.462 0.00 0.00 0.00 3.02
122 123 6.262049 ACCATTGCAACGCTATATATGTTTCA 59.738 34.615 0.00 0.00 0.00 2.69
123 124 6.668323 ACCATTGCAACGCTATATATGTTTC 58.332 36.000 0.00 0.00 0.00 2.78
124 125 6.486657 AGACCATTGCAACGCTATATATGTTT 59.513 34.615 0.00 0.00 0.00 2.83
125 126 5.997746 AGACCATTGCAACGCTATATATGTT 59.002 36.000 0.00 0.00 0.00 2.71
126 127 5.551233 AGACCATTGCAACGCTATATATGT 58.449 37.500 0.00 0.00 0.00 2.29
127 128 6.237569 CGTAGACCATTGCAACGCTATATATG 60.238 42.308 0.00 0.00 0.00 1.78
128 129 5.805486 CGTAGACCATTGCAACGCTATATAT 59.195 40.000 0.00 0.00 0.00 0.86
129 130 5.048573 TCGTAGACCATTGCAACGCTATATA 60.049 40.000 0.00 0.00 33.75 0.86
130 131 3.987868 CGTAGACCATTGCAACGCTATAT 59.012 43.478 0.00 0.00 0.00 0.86
131 132 3.067040 TCGTAGACCATTGCAACGCTATA 59.933 43.478 0.00 0.00 33.75 1.31
132 133 2.159156 TCGTAGACCATTGCAACGCTAT 60.159 45.455 0.00 0.00 33.75 2.97
133 134 1.202817 TCGTAGACCATTGCAACGCTA 59.797 47.619 0.00 0.00 33.75 4.26
134 135 0.037697 TCGTAGACCATTGCAACGCT 60.038 50.000 0.00 0.00 33.75 5.07
135 136 2.451693 TCGTAGACCATTGCAACGC 58.548 52.632 0.00 0.00 33.75 4.84
147 148 3.494626 ACAAAACGTAGACTCGTCGTAGA 59.505 43.478 0.00 0.00 43.38 2.59
148 149 3.803555 ACAAAACGTAGACTCGTCGTAG 58.196 45.455 0.00 0.00 43.38 3.51
149 150 3.878086 ACAAAACGTAGACTCGTCGTA 57.122 42.857 0.00 0.00 43.38 3.43
150 151 2.763249 ACAAAACGTAGACTCGTCGT 57.237 45.000 0.00 0.00 43.38 4.34
151 152 6.837307 TTATTACAAAACGTAGACTCGTCG 57.163 37.500 0.00 0.00 43.38 5.12
188 189 5.043248 CGAGGTCTTGTTGCAGAAATTTTT 58.957 37.500 0.00 0.00 0.00 1.94
189 190 4.499696 CCGAGGTCTTGTTGCAGAAATTTT 60.500 41.667 0.00 0.00 0.00 1.82
190 191 3.004734 CCGAGGTCTTGTTGCAGAAATTT 59.995 43.478 0.00 0.00 0.00 1.82
191 192 2.554032 CCGAGGTCTTGTTGCAGAAATT 59.446 45.455 0.00 0.00 0.00 1.82
192 193 2.154462 CCGAGGTCTTGTTGCAGAAAT 58.846 47.619 0.00 0.00 0.00 2.17
193 194 1.134220 ACCGAGGTCTTGTTGCAGAAA 60.134 47.619 0.00 0.00 0.00 2.52
194 195 0.468226 ACCGAGGTCTTGTTGCAGAA 59.532 50.000 0.00 0.00 0.00 3.02
195 196 0.468226 AACCGAGGTCTTGTTGCAGA 59.532 50.000 0.00 0.00 0.00 4.26
196 197 0.588252 CAACCGAGGTCTTGTTGCAG 59.412 55.000 0.00 0.00 33.72 4.41
197 198 2.701587 CAACCGAGGTCTTGTTGCA 58.298 52.632 0.00 0.00 33.72 4.08
199 200 1.021202 TTGCAACCGAGGTCTTGTTG 58.979 50.000 0.00 0.00 41.69 3.33
200 201 1.757682 TTTGCAACCGAGGTCTTGTT 58.242 45.000 0.00 0.00 0.00 2.83
201 202 1.757682 TTTTGCAACCGAGGTCTTGT 58.242 45.000 0.00 0.00 0.00 3.16
202 203 2.861462 TTTTTGCAACCGAGGTCTTG 57.139 45.000 0.00 0.00 0.00 3.02
246 247 6.197981 CAACAGTTGTTTTGTTGCACTTTTT 58.802 32.000 4.99 0.00 45.97 1.94
247 248 5.746539 CAACAGTTGTTTTGTTGCACTTTT 58.253 33.333 4.99 0.00 45.97 2.27
248 249 5.341407 CAACAGTTGTTTTGTTGCACTTT 57.659 34.783 4.99 0.00 45.97 2.66
249 250 4.988708 CAACAGTTGTTTTGTTGCACTT 57.011 36.364 4.99 0.00 45.97 3.16
255 256 6.610741 TTTTTCTGCAACAGTTGTTTTGTT 57.389 29.167 14.88 0.00 39.23 2.83
256 257 6.799926 ATTTTTCTGCAACAGTTGTTTTGT 57.200 29.167 14.88 0.00 35.83 2.83
257 258 7.520686 AGAATTTTTCTGCAACAGTTGTTTTG 58.479 30.769 14.88 3.44 38.91 2.44
258 259 7.671495 AGAATTTTTCTGCAACAGTTGTTTT 57.329 28.000 14.88 0.00 38.91 2.43
272 273 5.859205 AGGTCTTGTTGCAGAATTTTTCT 57.141 34.783 0.00 0.00 41.70 2.52
273 274 7.147976 ACATAGGTCTTGTTGCAGAATTTTTC 58.852 34.615 0.00 0.00 0.00 2.29
274 275 7.054491 ACATAGGTCTTGTTGCAGAATTTTT 57.946 32.000 0.00 0.00 0.00 1.94
275 276 6.655078 ACATAGGTCTTGTTGCAGAATTTT 57.345 33.333 0.00 0.00 0.00 1.82
276 277 6.449698 CAACATAGGTCTTGTTGCAGAATTT 58.550 36.000 3.87 0.00 45.10 1.82
277 278 6.017400 CAACATAGGTCTTGTTGCAGAATT 57.983 37.500 3.87 0.00 45.10 2.17
278 279 5.633830 CAACATAGGTCTTGTTGCAGAAT 57.366 39.130 3.87 0.00 45.10 2.40
285 286 7.759489 TTATTTCTGCAACATAGGTCTTGTT 57.241 32.000 0.00 0.00 37.79 2.83
286 287 7.067494 GGATTATTTCTGCAACATAGGTCTTGT 59.933 37.037 0.00 0.00 0.00 3.16
287 288 7.284034 AGGATTATTTCTGCAACATAGGTCTTG 59.716 37.037 0.00 0.00 0.00 3.02
288 289 7.284034 CAGGATTATTTCTGCAACATAGGTCTT 59.716 37.037 0.00 0.00 0.00 3.01
289 290 6.769822 CAGGATTATTTCTGCAACATAGGTCT 59.230 38.462 0.00 0.00 0.00 3.85
290 291 6.963796 CAGGATTATTTCTGCAACATAGGTC 58.036 40.000 0.00 0.00 0.00 3.85
291 292 6.949352 CAGGATTATTTCTGCAACATAGGT 57.051 37.500 0.00 0.00 0.00 3.08
301 302 5.393461 GGGTCTTGTTGCAGGATTATTTCTG 60.393 44.000 0.00 0.00 0.00 3.02
302 303 4.706962 GGGTCTTGTTGCAGGATTATTTCT 59.293 41.667 0.00 0.00 0.00 2.52
303 304 4.438744 CGGGTCTTGTTGCAGGATTATTTC 60.439 45.833 0.00 0.00 0.00 2.17
304 305 3.443681 CGGGTCTTGTTGCAGGATTATTT 59.556 43.478 0.00 0.00 0.00 1.40
305 306 3.016736 CGGGTCTTGTTGCAGGATTATT 58.983 45.455 0.00 0.00 0.00 1.40
306 307 2.026262 ACGGGTCTTGTTGCAGGATTAT 60.026 45.455 0.00 0.00 0.00 1.28
307 308 1.349688 ACGGGTCTTGTTGCAGGATTA 59.650 47.619 0.00 0.00 0.00 1.75
308 309 0.110486 ACGGGTCTTGTTGCAGGATT 59.890 50.000 0.00 0.00 0.00 3.01
309 310 0.606401 CACGGGTCTTGTTGCAGGAT 60.606 55.000 0.00 0.00 0.00 3.24
310 311 1.227823 CACGGGTCTTGTTGCAGGA 60.228 57.895 0.00 0.00 0.00 3.86
311 312 1.101049 AACACGGGTCTTGTTGCAGG 61.101 55.000 0.00 0.00 35.82 4.85
312 313 0.029300 CAACACGGGTCTTGTTGCAG 59.971 55.000 0.00 0.00 45.36 4.41
313 314 2.102554 CAACACGGGTCTTGTTGCA 58.897 52.632 0.00 0.00 45.36 4.08
316 317 0.107410 TCTGCAACACGGGTCTTGTT 60.107 50.000 0.00 0.00 37.69 2.83
317 318 0.107410 TTCTGCAACACGGGTCTTGT 60.107 50.000 0.00 0.00 0.00 3.16
318 319 0.588252 CTTCTGCAACACGGGTCTTG 59.412 55.000 0.00 0.00 0.00 3.02
319 320 0.180406 ACTTCTGCAACACGGGTCTT 59.820 50.000 0.00 0.00 0.00 3.01
320 321 1.045407 TACTTCTGCAACACGGGTCT 58.955 50.000 0.00 0.00 0.00 3.85
321 322 1.873698 TTACTTCTGCAACACGGGTC 58.126 50.000 0.00 0.00 0.00 4.46
322 323 2.423577 GATTACTTCTGCAACACGGGT 58.576 47.619 0.00 0.00 0.00 5.28
323 324 1.737793 GGATTACTTCTGCAACACGGG 59.262 52.381 0.00 0.00 0.00 5.28
324 325 2.416547 CAGGATTACTTCTGCAACACGG 59.583 50.000 0.00 0.00 0.00 4.94
325 326 3.729526 CAGGATTACTTCTGCAACACG 57.270 47.619 0.00 0.00 0.00 4.49
332 333 3.119708 GCCTTGTTGCAGGATTACTTCTG 60.120 47.826 0.00 0.00 35.71 3.02
333 334 3.084786 GCCTTGTTGCAGGATTACTTCT 58.915 45.455 0.00 0.00 35.71 2.85
334 335 2.164422 GGCCTTGTTGCAGGATTACTTC 59.836 50.000 0.00 0.00 35.71 3.01
335 336 2.171003 GGCCTTGTTGCAGGATTACTT 58.829 47.619 0.00 0.00 35.71 2.24
336 337 1.355720 AGGCCTTGTTGCAGGATTACT 59.644 47.619 0.00 0.00 35.71 2.24
337 338 1.474077 CAGGCCTTGTTGCAGGATTAC 59.526 52.381 0.00 0.00 35.71 1.89
338 339 1.075374 ACAGGCCTTGTTGCAGGATTA 59.925 47.619 0.00 0.00 36.31 1.75
339 340 0.178953 ACAGGCCTTGTTGCAGGATT 60.179 50.000 0.00 0.00 36.31 3.01
340 341 0.896940 CACAGGCCTTGTTGCAGGAT 60.897 55.000 0.00 0.00 38.16 3.24
341 342 1.529010 CACAGGCCTTGTTGCAGGA 60.529 57.895 0.00 0.00 38.16 3.86
342 343 1.394266 AACACAGGCCTTGTTGCAGG 61.394 55.000 23.84 6.70 38.16 4.85
343 344 0.249155 CAACACAGGCCTTGTTGCAG 60.249 55.000 30.45 17.81 45.36 4.41
344 345 1.815196 CAACACAGGCCTTGTTGCA 59.185 52.632 30.45 0.00 45.36 4.08
345 346 4.736165 CAACACAGGCCTTGTTGC 57.264 55.556 30.45 0.00 45.36 4.17
347 348 1.122227 ATTGCAACACAGGCCTTGTT 58.878 45.000 20.79 20.79 38.16 2.83
348 349 1.993956 TATTGCAACACAGGCCTTGT 58.006 45.000 0.00 8.78 41.94 3.16
349 350 2.353011 CCTTATTGCAACACAGGCCTTG 60.353 50.000 0.00 8.04 0.00 3.61
350 351 1.895131 CCTTATTGCAACACAGGCCTT 59.105 47.619 0.00 0.00 0.00 4.35
351 352 1.075374 TCCTTATTGCAACACAGGCCT 59.925 47.619 0.00 0.00 0.00 5.19
352 353 1.544724 TCCTTATTGCAACACAGGCC 58.455 50.000 0.00 0.00 0.00 5.19
353 354 2.094545 CCTTCCTTATTGCAACACAGGC 60.095 50.000 0.00 0.00 0.00 4.85
354 355 2.094545 GCCTTCCTTATTGCAACACAGG 60.095 50.000 0.00 7.70 0.00 4.00
355 356 2.557924 TGCCTTCCTTATTGCAACACAG 59.442 45.455 0.00 0.00 0.00 3.66
356 357 2.295909 GTGCCTTCCTTATTGCAACACA 59.704 45.455 0.00 0.00 35.16 3.72
357 358 2.668279 CGTGCCTTCCTTATTGCAACAC 60.668 50.000 0.00 0.77 35.16 3.32
358 359 1.539388 CGTGCCTTCCTTATTGCAACA 59.461 47.619 0.00 0.00 35.16 3.33
359 360 1.539827 ACGTGCCTTCCTTATTGCAAC 59.460 47.619 0.00 0.00 35.16 4.17
360 361 1.810151 GACGTGCCTTCCTTATTGCAA 59.190 47.619 0.00 0.00 35.16 4.08
361 362 1.448985 GACGTGCCTTCCTTATTGCA 58.551 50.000 0.00 0.00 0.00 4.08
362 363 0.733150 GGACGTGCCTTCCTTATTGC 59.267 55.000 0.00 0.00 0.00 3.56
363 364 1.006832 CGGACGTGCCTTCCTTATTG 58.993 55.000 0.00 0.00 0.00 1.90
364 365 0.899720 TCGGACGTGCCTTCCTTATT 59.100 50.000 0.00 0.00 0.00 1.40
365 366 0.899720 TTCGGACGTGCCTTCCTTAT 59.100 50.000 0.00 0.00 0.00 1.73
366 367 0.037975 GTTCGGACGTGCCTTCCTTA 60.038 55.000 0.00 0.00 0.00 2.69
367 368 1.301479 GTTCGGACGTGCCTTCCTT 60.301 57.895 0.00 0.00 0.00 3.36
368 369 2.342648 GTTCGGACGTGCCTTCCT 59.657 61.111 0.00 0.00 0.00 3.36
369 370 3.110178 CGTTCGGACGTGCCTTCC 61.110 66.667 8.45 0.00 44.08 3.46
386 387 2.177531 CGCACCACAGCATTGAGC 59.822 61.111 0.00 0.00 46.19 4.26
387 388 2.177531 GCGCACCACAGCATTGAG 59.822 61.111 0.30 0.00 0.00 3.02
388 389 3.364441 GGCGCACCACAGCATTGA 61.364 61.111 10.83 0.00 35.26 2.57
389 390 3.672447 TGGCGCACCACAGCATTG 61.672 61.111 10.83 0.00 42.67 2.82
456 457 1.643868 CCACCGCGAAAATGCTGCTA 61.644 55.000 8.23 0.00 0.00 3.49
457 458 2.562912 CACCGCGAAAATGCTGCT 59.437 55.556 8.23 0.00 0.00 4.24
531 532 2.354821 ACAACCGCTCTGTTTCAGAAAC 59.645 45.455 17.85 17.85 40.18 2.78
537 538 0.380378 TGCAACAACCGCTCTGTTTC 59.620 50.000 0.00 0.00 34.80 2.78
541 542 1.165907 TTCCTGCAACAACCGCTCTG 61.166 55.000 0.00 0.00 0.00 3.35
549 550 1.804151 GCGTGACTATTCCTGCAACAA 59.196 47.619 0.00 0.00 0.00 2.83
570 571 1.195448 CATCTGATCCAATTACCGCGC 59.805 52.381 0.00 0.00 0.00 6.86
586 587 1.077501 CATGCCCCGACAACCATCT 60.078 57.895 0.00 0.00 0.00 2.90
589 590 0.329931 AATACATGCCCCGACAACCA 59.670 50.000 0.00 0.00 0.00 3.67
603 604 1.551430 CCTGTACCACCGTCCAATACA 59.449 52.381 0.00 0.00 0.00 2.29
604 605 1.741394 GCCTGTACCACCGTCCAATAC 60.741 57.143 0.00 0.00 0.00 1.89
608 609 3.687102 CGCCTGTACCACCGTCCA 61.687 66.667 0.00 0.00 0.00 4.02
616 617 1.702491 GCGGATGTTTCGCCTGTACC 61.702 60.000 0.00 0.00 46.55 3.34
655 669 7.807977 TTGATATGACTATTTCTTTCAGGGC 57.192 36.000 0.00 0.00 0.00 5.19
822 836 2.746359 GGTGCTCTCTGCTGGTGT 59.254 61.111 0.00 0.00 43.37 4.16
823 837 2.433838 CGGTGCTCTCTGCTGGTG 60.434 66.667 0.00 0.00 43.37 4.17
1238 1530 1.685820 GACCTGAAACCTCTGGGGG 59.314 63.158 0.00 0.00 43.33 5.40
1284 1576 5.076182 TCATGACTCTAGAATCCCTAGCTG 58.924 45.833 0.00 0.00 43.60 4.24
1308 1606 3.193056 AGCTACCGTGAAGACTTAAGGTC 59.807 47.826 7.53 2.44 44.80 3.85
1313 1611 2.230508 CCACAGCTACCGTGAAGACTTA 59.769 50.000 4.32 0.00 36.43 2.24
1322 1620 0.394762 TCCGTATCCACAGCTACCGT 60.395 55.000 0.00 0.00 0.00 4.83
1358 2521 2.291282 ACCAAAGGAAATGCACGGGATA 60.291 45.455 0.00 0.00 0.00 2.59
1368 2531 2.105821 TCACTCACCGACCAAAGGAAAT 59.894 45.455 0.00 0.00 0.00 2.17
1372 2535 0.393077 ACTCACTCACCGACCAAAGG 59.607 55.000 0.00 0.00 0.00 3.11
1373 2536 1.068588 TCACTCACTCACCGACCAAAG 59.931 52.381 0.00 0.00 0.00 2.77
1496 2666 7.721399 GGTTCACAATGTTCATCCTATATCCTT 59.279 37.037 0.00 0.00 0.00 3.36
1699 2886 1.137086 AGGGACACATGATGACTACGC 59.863 52.381 0.00 0.00 0.00 4.42
1701 2888 5.352569 CAGAAAAGGGACACATGATGACTAC 59.647 44.000 0.00 0.00 0.00 2.73
1909 3136 3.256631 AGACATTGGACTGCCACATTTTC 59.743 43.478 0.00 0.00 45.94 2.29
1967 3194 5.534654 CAGAAGGGATTACAACAAAGAACCA 59.465 40.000 0.00 0.00 0.00 3.67
2084 3313 0.953003 CCCTTTGTTCCCGCGTTAAA 59.047 50.000 4.92 0.00 0.00 1.52
2189 3418 6.891388 TCCAAATGGACCTACGTATTGTATT 58.109 36.000 0.00 0.00 39.78 1.89
2221 3450 0.111639 GCCTACACCCTTTGTTCCCA 59.888 55.000 0.00 0.00 39.91 4.37
2552 3784 2.297315 CAGAGAGTAAGACACTGGCACA 59.703 50.000 0.00 0.00 37.72 4.57
2639 3871 3.561725 CAGTCCTTGTTCAAGAGTGGAAC 59.438 47.826 13.29 0.00 43.78 3.62
2658 3890 5.822519 TCAACAGTTACATTTGCTTCTCAGT 59.177 36.000 0.00 0.00 0.00 3.41
2695 3927 4.956075 CCCTTAAATGTGGTCCATTAGCTT 59.044 41.667 0.00 0.00 43.04 3.74
2702 3934 4.340617 GTGAATCCCTTAAATGTGGTCCA 58.659 43.478 0.00 0.00 0.00 4.02
2705 3937 3.245122 ACCGTGAATCCCTTAAATGTGGT 60.245 43.478 0.00 0.00 0.00 4.16
2745 3977 1.202710 ACAAACACGTGGATGGCTGTA 60.203 47.619 21.57 0.00 0.00 2.74
3064 4300 9.601217 AAAGCTGTTACATAGGTTTACTCTATG 57.399 33.333 8.91 8.91 45.66 2.23
3679 5340 3.370209 GGACATTAAGGTACTGTGGACCC 60.370 52.174 0.00 0.00 40.86 4.46
4046 5944 7.686859 GCACATGTTAGTATATGAAGGGACAGA 60.687 40.741 0.00 0.00 0.00 3.41
4332 6677 5.410924 AGAAAGGAAGCACACAAAGAAAAC 58.589 37.500 0.00 0.00 0.00 2.43
4652 6999 3.826157 CAGAAATAAGCCCAACTCCAACA 59.174 43.478 0.00 0.00 0.00 3.33
4821 7168 1.137872 AGTGGCATGCTAGACTGCTAC 59.862 52.381 18.92 19.24 46.54 3.58
4904 7251 2.507407 ATAACCACGCCATTTGAGGT 57.493 45.000 0.00 0.00 0.00 3.85
5007 7354 6.803642 ACACTTTACTCTCGACAGTTAAGTT 58.196 36.000 18.57 10.29 41.33 2.66
5008 7355 6.388435 ACACTTTACTCTCGACAGTTAAGT 57.612 37.500 16.32 16.32 43.65 2.24
5117 7465 2.093181 ACAACACAGTTCTACCAGTGCA 60.093 45.455 0.00 0.00 35.47 4.57
5118 7466 2.561569 ACAACACAGTTCTACCAGTGC 58.438 47.619 0.00 0.00 35.47 4.40
5127 7475 6.124088 ACAGAAATGAGAACAACACAGTTC 57.876 37.500 0.00 0.00 46.35 3.01
5357 7705 3.071023 AGTGCAAAGTAGACAGGCTTACA 59.929 43.478 0.00 0.00 0.00 2.41
5601 7952 7.331026 TGAGAGTTTATGATCCCAGTAAGTTG 58.669 38.462 0.00 0.00 0.00 3.16
5989 8340 6.273071 ACCTGCATTAGTTGACAAAAGAAAC 58.727 36.000 0.00 0.00 0.00 2.78
6026 8377 3.804325 AGTTGATCGAATGATACCTTGCG 59.196 43.478 0.00 0.00 34.09 4.85
6058 8409 5.987347 CACATGCCCATCAAATAAGGAAATC 59.013 40.000 0.00 0.00 0.00 2.17
6059 8410 5.662208 TCACATGCCCATCAAATAAGGAAAT 59.338 36.000 0.00 0.00 0.00 2.17
6142 8493 0.172803 AGTAAGGCGCCTAACAGACG 59.827 55.000 33.07 0.00 0.00 4.18
6173 8529 0.739112 GCAGCCCTTCAAGACGAGAG 60.739 60.000 0.00 0.00 0.00 3.20
6265 8621 1.115930 CGCTATACCAGAGGGCCAGT 61.116 60.000 6.18 0.00 37.90 4.00
6295 8651 4.578928 TGATCTGATGAGCATGTTTGATGG 59.421 41.667 0.00 0.00 33.24 3.51
6432 8792 0.802494 CGGTGAAAATTGTCTCCCCG 59.198 55.000 10.50 8.79 0.00 5.73
6558 8918 1.974957 TCCAGTTGAACCTCCGATCAA 59.025 47.619 0.00 0.00 33.37 2.57
6587 8947 1.822990 CCGACTACTTGTAGGGCTTCA 59.177 52.381 11.82 0.00 37.72 3.02
6618 8978 1.398041 CTCGTACGGGTGTCGATAACA 59.602 52.381 16.52 0.00 42.43 2.41
6626 8986 2.205152 ACTTGCCTCGTACGGGTGT 61.205 57.895 15.21 11.83 0.00 4.16
6685 9055 5.170748 GCCAGTTCCTACCATTGAATTTTG 58.829 41.667 0.00 0.00 0.00 2.44
6691 9061 0.981183 ACGCCAGTTCCTACCATTGA 59.019 50.000 0.00 0.00 0.00 2.57
6778 9148 0.542702 AACATCCACCTGCCCCTTTG 60.543 55.000 0.00 0.00 0.00 2.77
6789 9159 1.741706 CACTCAGCATCCAACATCCAC 59.258 52.381 0.00 0.00 0.00 4.02
6887 9260 8.352201 TGTGAACATTCTTCAAGGAACTAAATG 58.648 33.333 0.00 0.00 38.49 2.32
6917 9290 6.721318 TCCTTTTAGCACCATTTGACTCTAT 58.279 36.000 0.00 0.00 0.00 1.98
6989 9362 5.418310 AATACAAGTCAAACAGTGAACGG 57.582 39.130 0.00 0.00 38.23 4.44
6990 9363 6.255215 ACAAATACAAGTCAAACAGTGAACG 58.745 36.000 0.00 0.00 38.23 3.95
7007 9381 6.801862 GCAGTGAAATGTACAAGGACAAATAC 59.198 38.462 0.00 0.00 31.83 1.89
7008 9382 6.714810 AGCAGTGAAATGTACAAGGACAAATA 59.285 34.615 0.00 0.00 31.83 1.40
7012 9386 4.065088 GAGCAGTGAAATGTACAAGGACA 58.935 43.478 0.00 0.00 0.00 4.02
7036 9410 6.711645 GCCGGTAATACTTGGGATATTTTACA 59.288 38.462 1.90 0.00 0.00 2.41
7043 9417 1.619827 CCGCCGGTAATACTTGGGATA 59.380 52.381 1.90 0.00 0.00 2.59
7044 9418 0.395312 CCGCCGGTAATACTTGGGAT 59.605 55.000 1.90 0.00 0.00 3.85
7045 9419 0.977108 ACCGCCGGTAATACTTGGGA 60.977 55.000 7.20 0.00 32.11 4.37
7047 9421 1.741528 AAACCGCCGGTAATACTTGG 58.258 50.000 10.30 0.00 33.12 3.61
7048 9422 4.121317 TCATAAACCGCCGGTAATACTTG 58.879 43.478 10.30 2.90 33.12 3.16
7049 9423 4.405116 TCATAAACCGCCGGTAATACTT 57.595 40.909 10.30 1.54 33.12 2.24
7148 9522 0.036858 GTGTCCCTTCCTCACTGCTC 60.037 60.000 0.00 0.00 0.00 4.26
7252 9633 6.459573 CGGAACTCCTTGAACAAGAATTCAAA 60.460 38.462 14.99 0.00 45.52 2.69
7263 9644 5.873164 TCTAATAAAGCGGAACTCCTTGAAC 59.127 40.000 0.00 0.00 0.00 3.18
7387 9768 8.470002 AGATAATTCCTGTCCAATAAAGCAAAC 58.530 33.333 0.00 0.00 0.00 2.93
7453 9834 0.561593 CATCGTCGTTGTCGTCATCG 59.438 55.000 6.76 6.76 37.89 3.84
7519 9900 6.218746 GCTCATTTTCACTTGATGTTTTCCT 58.781 36.000 0.00 0.00 0.00 3.36
7554 9936 5.554822 TCTATGACCCAATTTTACGCAAC 57.445 39.130 0.00 0.00 0.00 4.17
7675 10057 6.579292 TCAATACCGTGCATTTTACTTTTTCG 59.421 34.615 0.00 0.00 0.00 3.46
7752 10134 4.929808 CGGAAGGAGGGAATATCATTTACG 59.070 45.833 0.00 0.00 0.00 3.18
7771 10153 6.096705 TCGGAAACACTCTTATATTACCGGAA 59.903 38.462 9.46 0.00 37.69 4.30
7801 10183 2.544267 AGAGCGTTTTTGACACTAGTGC 59.456 45.455 22.90 15.35 0.00 4.40
7806 10188 9.378551 TCATAATATAAGAGCGTTTTTGACACT 57.621 29.630 0.00 0.00 0.00 3.55
7809 10191 9.851043 GTCTCATAATATAAGAGCGTTTTTGAC 57.149 33.333 0.00 0.00 0.00 3.18
7811 10193 8.004344 CCGTCTCATAATATAAGAGCGTTTTTG 58.996 37.037 0.00 0.00 31.69 2.44
7812 10194 7.924412 TCCGTCTCATAATATAAGAGCGTTTTT 59.076 33.333 0.00 0.00 31.69 1.94
7813 10195 7.431249 TCCGTCTCATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 31.69 2.43
7814 10196 6.978338 TCCGTCTCATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 31.69 3.60
7815 10197 6.349445 CCTCCGTCTCATAATATAAGAGCGTT 60.349 42.308 0.00 0.00 31.69 4.84
7816 10198 5.124138 CCTCCGTCTCATAATATAAGAGCGT 59.876 44.000 0.00 0.00 31.69 5.07
7835 10217 5.361857 TCAAAGTTAATACCTACTCCCTCCG 59.638 44.000 0.00 0.00 0.00 4.63
7842 10224 7.630082 TGCAAGGATCAAAGTTAATACCTACT 58.370 34.615 0.00 0.00 0.00 2.57
7932 10475 6.402550 GCAGATTGTGTGAAAATCTCGTGTAT 60.403 38.462 0.00 0.00 41.39 2.29
7937 10480 4.400845 CTGCAGATTGTGTGAAAATCTCG 58.599 43.478 8.42 0.00 41.39 4.04
7951 10494 7.876371 AGGGGTATTAATATATGCTGCAGATT 58.124 34.615 20.43 10.35 0.00 2.40
7955 10498 7.749377 ACTAGGGGTATTAATATATGCTGCA 57.251 36.000 4.13 4.13 0.00 4.41
8000 10544 2.670509 GCATCTTTGCTTTGAGCTGACC 60.671 50.000 0.00 0.00 45.77 4.02
8092 10638 7.491696 AGGAATACTCAAGTTTATAACGAGCAC 59.508 37.037 0.00 0.00 36.23 4.40
8098 10644 9.162764 TCAGCAAGGAATACTCAAGTTTATAAC 57.837 33.333 0.00 0.00 0.00 1.89
8103 10649 6.716628 TCAATCAGCAAGGAATACTCAAGTTT 59.283 34.615 0.00 0.00 0.00 2.66
8164 10711 4.609018 CGCTGGGCCTGGGTATCG 62.609 72.222 17.74 6.20 0.00 2.92
8248 10796 0.739112 GCCCTGAGAGCTTCTTCGTG 60.739 60.000 0.00 0.00 0.00 4.35
8249 10797 0.902516 AGCCCTGAGAGCTTCTTCGT 60.903 55.000 0.00 0.00 37.24 3.85
8251 10799 0.107752 CCAGCCCTGAGAGCTTCTTC 60.108 60.000 0.00 0.00 38.95 2.87
8283 10832 0.398522 TATGGCCCTCGGTCTGACAT 60.399 55.000 10.38 0.00 0.00 3.06
8348 10897 6.017026 TCTGTCTATGGTACTCTTTCATAGCG 60.017 42.308 9.84 3.91 39.82 4.26
8353 10902 7.540474 AGTTTCTGTCTATGGTACTCTTTCA 57.460 36.000 0.00 0.00 0.00 2.69
8450 11463 7.492077 AGGCAAAATGTTACTAGTAGGTACT 57.508 36.000 2.23 0.00 46.37 2.73
8451 11464 7.279536 GGAAGGCAAAATGTTACTAGTAGGTAC 59.720 40.741 2.23 0.00 0.00 3.34
8452 11465 7.181485 AGGAAGGCAAAATGTTACTAGTAGGTA 59.819 37.037 2.23 0.00 0.00 3.08
8453 11466 6.012771 AGGAAGGCAAAATGTTACTAGTAGGT 60.013 38.462 2.23 0.00 0.00 3.08
8454 11467 6.316390 CAGGAAGGCAAAATGTTACTAGTAGG 59.684 42.308 2.23 0.00 0.00 3.18
8459 11472 5.381757 ACACAGGAAGGCAAAATGTTACTA 58.618 37.500 0.00 0.00 0.00 1.82
8479 11492 3.660865 CCAGAACTGGTACCTGTTACAC 58.339 50.000 30.40 20.54 45.53 2.90
8497 11510 0.865769 CAAAACTCCGACGAACCCAG 59.134 55.000 0.00 0.00 0.00 4.45
8731 12019 4.258702 ACGAATCAACAGCTTCAGTACT 57.741 40.909 0.00 0.00 0.00 2.73
8733 12021 5.161358 CAGTACGAATCAACAGCTTCAGTA 58.839 41.667 0.00 0.00 0.00 2.74
8734 12022 3.990469 CAGTACGAATCAACAGCTTCAGT 59.010 43.478 0.00 0.00 0.00 3.41
8736 12024 3.740832 CACAGTACGAATCAACAGCTTCA 59.259 43.478 0.00 0.00 0.00 3.02
8741 12029 2.412870 TGCCACAGTACGAATCAACAG 58.587 47.619 0.00 0.00 0.00 3.16
8924 12269 3.177194 TAGATCCCCATTGCCGGCG 62.177 63.158 23.90 7.50 0.00 6.46
8956 12301 3.728076 TTCAGACTCGCTTACTTGTGT 57.272 42.857 0.00 0.00 0.00 3.72
9037 12386 0.537188 TCTTCCCTCTCCGTCATTGC 59.463 55.000 0.00 0.00 0.00 3.56
9108 12459 2.026262 TCCCTTTGTGGATCCTACTTGC 60.026 50.000 14.23 0.00 38.35 4.01
9109 12460 3.264450 ACTCCCTTTGTGGATCCTACTTG 59.736 47.826 14.23 0.62 38.35 3.16
9127 12487 6.980051 ATTAATTCAACGGTCACTAACTCC 57.020 37.500 0.00 0.00 0.00 3.85
9136 12496 7.852945 CAGAAAGAGCATATTAATTCAACGGTC 59.147 37.037 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.