Multiple sequence alignment - TraesCS5B01G258400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G258400 chr5B 100.000 2744 0 0 1 2744 440547359 440544616 0.000000e+00 5068.0
1 TraesCS5B01G258400 chr5B 100.000 2048 0 0 1 2048 440558168 440556121 0.000000e+00 3783.0
2 TraesCS5B01G258400 chr5B 100.000 150 0 0 2967 3116 440544393 440544244 8.510000e-71 278.0
3 TraesCS5B01G258400 chr5B 95.946 148 6 0 2967 3114 461864708 461864855 1.120000e-59 241.0
4 TraesCS5B01G258400 chrUn 99.845 2578 4 0 1 2578 272188812 272191389 0.000000e+00 4739.0
5 TraesCS5B01G258400 chrUn 99.845 2578 4 0 1 2578 281133972 281136549 0.000000e+00 4739.0
6 TraesCS5B01G258400 chrUn 97.534 446 11 0 1 446 58550929 58551374 0.000000e+00 763.0
7 TraesCS5B01G258400 chr5A 91.663 2075 116 27 450 2476 474025035 474027100 0.000000e+00 2820.0
8 TraesCS5B01G258400 chr5A 91.663 2075 116 27 450 2476 474158362 474160427 0.000000e+00 2820.0
9 TraesCS5B01G258400 chr5A 91.127 2085 118 28 450 2476 474290661 474292736 0.000000e+00 2765.0
10 TraesCS5B01G258400 chr5A 93.814 97 3 1 2482 2575 474160464 474160560 3.240000e-30 143.0
11 TraesCS5B01G258400 chr5A 93.814 97 3 1 2482 2575 474292773 474292869 3.240000e-30 143.0
12 TraesCS5B01G258400 chr5D 93.984 1762 64 15 745 2483 371273565 371271823 0.000000e+00 2628.0
13 TraesCS5B01G258400 chr5D 93.950 1471 59 11 745 2192 371018632 371020095 0.000000e+00 2196.0
14 TraesCS5B01G258400 chr5D 77.470 506 94 14 1582 2074 52365626 52366124 5.090000e-73 285.0
15 TraesCS5B01G258400 chr5D 85.714 140 1 2 447 586 371274961 371274841 2.520000e-26 130.0
16 TraesCS5B01G258400 chr5D 91.463 82 4 3 611 689 371274840 371274759 3.290000e-20 110.0
17 TraesCS5B01G258400 chr5D 88.636 88 2 1 2155 2234 371020101 371020188 1.980000e-17 100.0
18 TraesCS5B01G258400 chr5D 100.000 42 0 0 2482 2523 371271781 371271740 9.260000e-11 78.7
19 TraesCS5B01G258400 chr1B 97.982 446 9 0 1 446 470441302 470440857 0.000000e+00 774.0
20 TraesCS5B01G258400 chr1B 94.000 150 9 0 2967 3116 635852700 635852551 8.690000e-56 228.0
21 TraesCS5B01G258400 chr1B 92.667 150 11 0 2967 3116 635853691 635853542 1.880000e-52 217.0
22 TraesCS5B01G258400 chr1B 92.568 148 10 1 2967 3114 344181757 344181903 8.760000e-51 211.0
23 TraesCS5B01G258400 chr1B 87.135 171 18 3 2574 2744 635854020 635853854 1.140000e-44 191.0
24 TraesCS5B01G258400 chr1B 84.211 171 17 5 2578 2744 344181421 344181585 1.160000e-34 158.0
25 TraesCS5B01G258400 chr1B 87.970 133 12 4 2612 2744 635852992 635852864 1.500000e-33 154.0
26 TraesCS5B01G258400 chr1B 81.333 150 20 6 2572 2716 514087978 514088124 7.060000e-22 115.0
27 TraesCS5B01G258400 chr1B 79.310 174 24 8 2570 2741 365779473 365779636 9.130000e-21 111.0
28 TraesCS5B01G258400 chr7D 97.763 447 10 0 1 447 7869535 7869089 0.000000e+00 771.0
29 TraesCS5B01G258400 chr3B 97.763 447 10 0 1 447 223642948 223642502 0.000000e+00 771.0
30 TraesCS5B01G258400 chr7B 96.368 468 16 1 1 468 562168904 562169370 0.000000e+00 769.0
31 TraesCS5B01G258400 chr7B 95.946 148 6 0 2967 3114 216655261 216655408 1.120000e-59 241.0
32 TraesCS5B01G258400 chr7B 84.211 133 11 5 2616 2744 216654963 216655089 1.520000e-23 121.0
33 TraesCS5B01G258400 chr7B 84.762 105 15 1 2572 2676 165297956 165298059 1.530000e-18 104.0
34 TraesCS5B01G258400 chr4B 96.753 462 14 1 1 462 400366507 400366047 0.000000e+00 769.0
35 TraesCS5B01G258400 chr4B 82.119 151 17 7 2572 2716 462185064 462185210 1.520000e-23 121.0
36 TraesCS5B01G258400 chr6B 95.270 148 7 0 2967 3114 49235134 49234987 5.200000e-58 235.0
37 TraesCS5B01G258400 chr4D 95.205 146 7 0 2967 3112 280787073 280786928 6.720000e-57 231.0
38 TraesCS5B01G258400 chr3A 94.483 145 8 0 2967 3111 403397489 403397633 1.120000e-54 224.0
39 TraesCS5B01G258400 chr3A 87.500 160 16 3 2585 2744 403397162 403397317 6.860000e-42 182.0
40 TraesCS5B01G258400 chr3A 93.182 44 3 0 2578 2621 741096796 741096753 7.210000e-07 65.8
41 TraesCS5B01G258400 chr2A 93.056 144 9 1 2971 3114 536479283 536479141 3.150000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G258400 chr5B 440544244 440547359 3115 True 2673.000 5068 100.00000 1 3116 2 chr5B.!!$R2 3115
1 TraesCS5B01G258400 chr5B 440556121 440558168 2047 True 3783.000 3783 100.00000 1 2048 1 chr5B.!!$R1 2047
2 TraesCS5B01G258400 chrUn 272188812 272191389 2577 False 4739.000 4739 99.84500 1 2578 1 chrUn.!!$F2 2577
3 TraesCS5B01G258400 chrUn 281133972 281136549 2577 False 4739.000 4739 99.84500 1 2578 1 chrUn.!!$F3 2577
4 TraesCS5B01G258400 chr5A 474025035 474027100 2065 False 2820.000 2820 91.66300 450 2476 1 chr5A.!!$F1 2026
5 TraesCS5B01G258400 chr5A 474158362 474160560 2198 False 1481.500 2820 92.73850 450 2575 2 chr5A.!!$F2 2125
6 TraesCS5B01G258400 chr5A 474290661 474292869 2208 False 1454.000 2765 92.47050 450 2575 2 chr5A.!!$F3 2125
7 TraesCS5B01G258400 chr5D 371018632 371020188 1556 False 1148.000 2196 91.29300 745 2234 2 chr5D.!!$F2 1489
8 TraesCS5B01G258400 chr5D 371271740 371274961 3221 True 736.675 2628 92.79025 447 2523 4 chr5D.!!$R1 2076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2149 3384 3.119101 TCTGTTTCTTCGGGACTAGATGC 60.119 47.826 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3090 4457 0.547954 GGAGTGGAAGGGAGAGGGTT 60.548 60.0 0.0 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2149 3384 3.119101 TCTGTTTCTTCGGGACTAGATGC 60.119 47.826 0.00 0.00 0.00 3.91
2578 3945 8.974060 TTGGGTGATACCATTAGTTCTATTTC 57.026 34.615 0.00 0.00 41.02 2.17
2579 3946 8.331931 TGGGTGATACCATTAGTTCTATTTCT 57.668 34.615 0.00 0.00 41.02 2.52
2580 3947 8.778059 TGGGTGATACCATTAGTTCTATTTCTT 58.222 33.333 0.00 0.00 41.02 2.52
2581 3948 9.628500 GGGTGATACCATTAGTTCTATTTCTTT 57.372 33.333 0.00 0.00 41.02 2.52
2618 3985 4.822107 CAGATATTGCTTTTGGTCGTACG 58.178 43.478 9.53 9.53 0.00 3.67
2619 3986 4.328983 CAGATATTGCTTTTGGTCGTACGT 59.671 41.667 16.05 0.00 0.00 3.57
2620 3987 4.565564 AGATATTGCTTTTGGTCGTACGTC 59.434 41.667 16.05 9.80 0.00 4.34
2621 3988 0.854062 TTGCTTTTGGTCGTACGTCG 59.146 50.000 16.05 0.00 41.41 5.12
2622 3989 1.129209 GCTTTTGGTCGTACGTCGC 59.871 57.895 16.05 4.44 39.67 5.19
2623 3990 1.280206 GCTTTTGGTCGTACGTCGCT 61.280 55.000 16.05 0.00 39.67 4.93
2624 3991 0.706729 CTTTTGGTCGTACGTCGCTC 59.293 55.000 16.05 2.54 39.67 5.03
2625 3992 0.998226 TTTTGGTCGTACGTCGCTCG 60.998 55.000 16.05 0.00 46.00 5.03
2626 3993 2.784957 TTTGGTCGTACGTCGCTCGG 62.785 60.000 16.05 0.00 44.69 4.63
2628 3995 4.450122 GTCGTACGTCGCTCGGCA 62.450 66.667 16.05 0.00 44.69 5.69
2629 3996 3.502455 TCGTACGTCGCTCGGCAT 61.502 61.111 16.05 0.00 44.69 4.40
2630 3997 2.578713 CGTACGTCGCTCGGCATT 60.579 61.111 7.22 0.00 44.69 3.56
2631 3998 2.156446 CGTACGTCGCTCGGCATTT 61.156 57.895 7.22 0.00 44.69 2.32
2632 3999 1.680105 CGTACGTCGCTCGGCATTTT 61.680 55.000 7.22 0.00 44.69 1.82
2633 4000 0.441145 GTACGTCGCTCGGCATTTTT 59.559 50.000 0.00 0.00 44.69 1.94
2634 4001 0.440758 TACGTCGCTCGGCATTTTTG 59.559 50.000 0.00 0.00 44.69 2.44
2635 4002 2.145905 CGTCGCTCGGCATTTTTGC 61.146 57.895 0.00 0.00 35.71 3.68
2636 4003 1.081509 GTCGCTCGGCATTTTTGCA 60.082 52.632 0.00 0.00 36.33 4.08
2637 4004 0.662970 GTCGCTCGGCATTTTTGCAA 60.663 50.000 0.00 0.00 36.33 4.08
2638 4005 0.031314 TCGCTCGGCATTTTTGCAAA 59.969 45.000 8.05 8.05 36.33 3.68
2639 4006 0.857935 CGCTCGGCATTTTTGCAAAA 59.142 45.000 20.46 20.46 36.33 2.44
2640 4007 1.460359 CGCTCGGCATTTTTGCAAAAT 59.540 42.857 24.39 12.25 36.33 1.82
2641 4008 2.665537 CGCTCGGCATTTTTGCAAAATA 59.334 40.909 24.39 15.44 36.33 1.40
2642 4009 3.241741 CGCTCGGCATTTTTGCAAAATAG 60.242 43.478 24.39 19.45 36.33 1.73
2643 4010 3.484065 GCTCGGCATTTTTGCAAAATAGC 60.484 43.478 27.60 27.60 36.33 2.97
2644 4011 2.999355 TCGGCATTTTTGCAAAATAGCC 59.001 40.909 35.20 35.20 41.18 3.93
2645 4012 2.095692 CGGCATTTTTGCAAAATAGCCC 59.904 45.455 36.64 26.89 41.36 5.19
2646 4013 3.346315 GGCATTTTTGCAAAATAGCCCT 58.654 40.909 35.14 14.96 39.90 5.19
2647 4014 3.758023 GGCATTTTTGCAAAATAGCCCTT 59.242 39.130 35.14 13.80 39.90 3.95
2648 4015 4.379708 GGCATTTTTGCAAAATAGCCCTTG 60.380 41.667 35.14 21.44 39.90 3.61
2649 4016 4.216042 GCATTTTTGCAAAATAGCCCTTGT 59.784 37.500 24.39 1.49 34.41 3.16
2650 4017 5.411053 GCATTTTTGCAAAATAGCCCTTGTA 59.589 36.000 24.39 6.75 34.41 2.41
2651 4018 6.402442 GCATTTTTGCAAAATAGCCCTTGTAG 60.402 38.462 24.39 5.91 34.41 2.74
2652 4019 5.799827 TTTTGCAAAATAGCCCTTGTAGT 57.200 34.783 20.46 0.00 0.00 2.73
2653 4020 5.799827 TTTGCAAAATAGCCCTTGTAGTT 57.200 34.783 10.02 0.00 0.00 2.24
2654 4021 5.799827 TTGCAAAATAGCCCTTGTAGTTT 57.200 34.783 0.00 0.00 0.00 2.66
2655 4022 6.902771 TTGCAAAATAGCCCTTGTAGTTTA 57.097 33.333 0.00 0.00 0.00 2.01
2656 4023 6.509418 TGCAAAATAGCCCTTGTAGTTTAG 57.491 37.500 0.00 0.00 0.00 1.85
2657 4024 6.242396 TGCAAAATAGCCCTTGTAGTTTAGA 58.758 36.000 0.00 0.00 0.00 2.10
2658 4025 6.374333 TGCAAAATAGCCCTTGTAGTTTAGAG 59.626 38.462 0.00 0.00 0.00 2.43
2659 4026 6.374613 GCAAAATAGCCCTTGTAGTTTAGAGT 59.625 38.462 0.00 0.00 0.00 3.24
2660 4027 7.551617 GCAAAATAGCCCTTGTAGTTTAGAGTA 59.448 37.037 0.00 0.00 0.00 2.59
2661 4028 9.614792 CAAAATAGCCCTTGTAGTTTAGAGTAT 57.385 33.333 0.00 0.00 0.00 2.12
2663 4030 9.833917 AAATAGCCCTTGTAGTTTAGAGTATTC 57.166 33.333 0.00 0.00 0.00 1.75
2664 4031 6.869206 AGCCCTTGTAGTTTAGAGTATTCA 57.131 37.500 0.00 0.00 0.00 2.57
2665 4032 7.253905 AGCCCTTGTAGTTTAGAGTATTCAA 57.746 36.000 0.00 0.00 0.00 2.69
2666 4033 7.104290 AGCCCTTGTAGTTTAGAGTATTCAAC 58.896 38.462 0.00 0.00 0.00 3.18
2667 4034 6.315642 GCCCTTGTAGTTTAGAGTATTCAACC 59.684 42.308 0.00 0.00 0.00 3.77
2668 4035 6.822170 CCCTTGTAGTTTAGAGTATTCAACCC 59.178 42.308 0.00 0.00 0.00 4.11
2669 4036 6.534079 CCTTGTAGTTTAGAGTATTCAACCCG 59.466 42.308 0.00 0.00 0.00 5.28
2670 4037 5.413499 TGTAGTTTAGAGTATTCAACCCGC 58.587 41.667 0.00 0.00 0.00 6.13
2671 4038 4.546829 AGTTTAGAGTATTCAACCCGCA 57.453 40.909 0.00 0.00 0.00 5.69
2672 4039 4.504858 AGTTTAGAGTATTCAACCCGCAG 58.495 43.478 0.00 0.00 0.00 5.18
2673 4040 4.020485 AGTTTAGAGTATTCAACCCGCAGT 60.020 41.667 0.00 0.00 0.00 4.40
2674 4041 2.674796 AGAGTATTCAACCCGCAGTC 57.325 50.000 0.00 0.00 0.00 3.51
2675 4042 1.207329 AGAGTATTCAACCCGCAGTCC 59.793 52.381 0.00 0.00 0.00 3.85
2676 4043 0.981183 AGTATTCAACCCGCAGTCCA 59.019 50.000 0.00 0.00 0.00 4.02
2677 4044 1.559682 AGTATTCAACCCGCAGTCCAT 59.440 47.619 0.00 0.00 0.00 3.41
2678 4045 2.769663 AGTATTCAACCCGCAGTCCATA 59.230 45.455 0.00 0.00 0.00 2.74
2679 4046 3.391296 AGTATTCAACCCGCAGTCCATAT 59.609 43.478 0.00 0.00 0.00 1.78
2680 4047 4.591498 AGTATTCAACCCGCAGTCCATATA 59.409 41.667 0.00 0.00 0.00 0.86
2681 4048 3.916359 TTCAACCCGCAGTCCATATAA 57.084 42.857 0.00 0.00 0.00 0.98
2682 4049 3.916359 TCAACCCGCAGTCCATATAAA 57.084 42.857 0.00 0.00 0.00 1.40
2683 4050 4.223556 TCAACCCGCAGTCCATATAAAA 57.776 40.909 0.00 0.00 0.00 1.52
2684 4051 4.196193 TCAACCCGCAGTCCATATAAAAG 58.804 43.478 0.00 0.00 0.00 2.27
2685 4052 3.926058 ACCCGCAGTCCATATAAAAGT 57.074 42.857 0.00 0.00 0.00 2.66
2686 4053 4.230745 ACCCGCAGTCCATATAAAAGTT 57.769 40.909 0.00 0.00 0.00 2.66
2687 4054 5.362105 ACCCGCAGTCCATATAAAAGTTA 57.638 39.130 0.00 0.00 0.00 2.24
2688 4055 5.747342 ACCCGCAGTCCATATAAAAGTTAA 58.253 37.500 0.00 0.00 0.00 2.01
2689 4056 5.587443 ACCCGCAGTCCATATAAAAGTTAAC 59.413 40.000 0.00 0.00 0.00 2.01
2690 4057 5.008316 CCCGCAGTCCATATAAAAGTTAACC 59.992 44.000 0.88 0.00 0.00 2.85
2691 4058 5.277154 CCGCAGTCCATATAAAAGTTAACCG 60.277 44.000 0.88 0.00 0.00 4.44
2692 4059 5.521010 CGCAGTCCATATAAAAGTTAACCGA 59.479 40.000 0.88 0.00 0.00 4.69
2693 4060 6.036300 CGCAGTCCATATAAAAGTTAACCGAA 59.964 38.462 0.88 0.00 0.00 4.30
2694 4061 7.184779 GCAGTCCATATAAAAGTTAACCGAAC 58.815 38.462 0.88 0.00 38.44 3.95
2695 4062 7.677982 GCAGTCCATATAAAAGTTAACCGAACC 60.678 40.741 0.88 0.00 39.02 3.62
2696 4063 6.536224 AGTCCATATAAAAGTTAACCGAACCG 59.464 38.462 0.88 0.00 39.02 4.44
2708 4075 2.373540 CCGAACCGGTGTGAGATAAA 57.626 50.000 8.52 0.00 42.73 1.40
2709 4076 2.690786 CCGAACCGGTGTGAGATAAAA 58.309 47.619 8.52 0.00 42.73 1.52
2710 4077 2.671396 CCGAACCGGTGTGAGATAAAAG 59.329 50.000 8.52 0.00 42.73 2.27
2711 4078 3.581755 CGAACCGGTGTGAGATAAAAGA 58.418 45.455 8.52 0.00 0.00 2.52
2712 4079 3.991773 CGAACCGGTGTGAGATAAAAGAA 59.008 43.478 8.52 0.00 0.00 2.52
2713 4080 4.449743 CGAACCGGTGTGAGATAAAAGAAA 59.550 41.667 8.52 0.00 0.00 2.52
2714 4081 5.049954 CGAACCGGTGTGAGATAAAAGAAAA 60.050 40.000 8.52 0.00 0.00 2.29
2715 4082 6.512091 CGAACCGGTGTGAGATAAAAGAAAAA 60.512 38.462 8.52 0.00 0.00 1.94
2716 4083 6.313744 ACCGGTGTGAGATAAAAGAAAAAG 57.686 37.500 6.12 0.00 0.00 2.27
2717 4084 6.059484 ACCGGTGTGAGATAAAAGAAAAAGA 58.941 36.000 6.12 0.00 0.00 2.52
2718 4085 6.544564 ACCGGTGTGAGATAAAAGAAAAAGAA 59.455 34.615 6.12 0.00 0.00 2.52
2719 4086 7.078228 CCGGTGTGAGATAAAAGAAAAAGAAG 58.922 38.462 0.00 0.00 0.00 2.85
2720 4087 7.041372 CCGGTGTGAGATAAAAGAAAAAGAAGA 60.041 37.037 0.00 0.00 0.00 2.87
2721 4088 8.342634 CGGTGTGAGATAAAAGAAAAAGAAGAA 58.657 33.333 0.00 0.00 0.00 2.52
2739 4106 3.266240 AAAAACCTGCCTCCCGATC 57.734 52.632 0.00 0.00 0.00 3.69
2740 4107 0.698818 AAAAACCTGCCTCCCGATCT 59.301 50.000 0.00 0.00 0.00 2.75
2741 4108 0.253327 AAAACCTGCCTCCCGATCTC 59.747 55.000 0.00 0.00 0.00 2.75
2742 4109 0.909610 AAACCTGCCTCCCGATCTCA 60.910 55.000 0.00 0.00 0.00 3.27
2743 4110 0.692419 AACCTGCCTCCCGATCTCAT 60.692 55.000 0.00 0.00 0.00 2.90
2998 4365 3.086600 GCTCCCCTGGACCCTGAG 61.087 72.222 0.00 0.00 0.00 3.35
2999 4366 3.086600 CTCCCCTGGACCCTGAGC 61.087 72.222 0.00 0.00 0.00 4.26
3023 4390 3.541713 GCCCTAGCCACCCTCGAG 61.542 72.222 5.13 5.13 0.00 4.04
3024 4391 3.541713 CCCTAGCCACCCTCGAGC 61.542 72.222 6.99 0.00 0.00 5.03
3025 4392 3.541713 CCTAGCCACCCTCGAGCC 61.542 72.222 6.99 0.00 0.00 4.70
3026 4393 2.443016 CTAGCCACCCTCGAGCCT 60.443 66.667 6.99 0.24 0.00 4.58
3027 4394 2.442272 TAGCCACCCTCGAGCCTC 60.442 66.667 6.99 0.00 0.00 4.70
3030 4397 3.775654 CCACCCTCGAGCCTCCAC 61.776 72.222 6.99 0.00 0.00 4.02
3031 4398 3.775654 CACCCTCGAGCCTCCACC 61.776 72.222 6.99 0.00 0.00 4.61
3032 4399 4.316823 ACCCTCGAGCCTCCACCA 62.317 66.667 6.99 0.00 0.00 4.17
3033 4400 3.465403 CCCTCGAGCCTCCACCAG 61.465 72.222 6.99 0.00 0.00 4.00
3034 4401 3.465403 CCTCGAGCCTCCACCAGG 61.465 72.222 6.99 0.00 46.82 4.45
3035 4402 2.681778 CTCGAGCCTCCACCAGGT 60.682 66.667 0.00 0.00 45.61 4.00
3036 4403 2.997315 TCGAGCCTCCACCAGGTG 60.997 66.667 13.35 13.35 45.61 4.00
3037 4404 2.997315 CGAGCCTCCACCAGGTGA 60.997 66.667 22.37 6.37 45.61 4.02
3038 4405 2.665603 GAGCCTCCACCAGGTGAC 59.334 66.667 22.37 7.42 45.61 3.67
3039 4406 2.930562 AGCCTCCACCAGGTGACC 60.931 66.667 22.37 5.95 45.61 4.02
3040 4407 4.035102 GCCTCCACCAGGTGACCC 62.035 72.222 22.37 2.56 45.61 4.46
3041 4408 3.330720 CCTCCACCAGGTGACCCC 61.331 72.222 22.37 0.00 37.53 4.95
3042 4409 2.529136 CTCCACCAGGTGACCCCA 60.529 66.667 22.37 0.00 35.23 4.96
3043 4410 2.529136 TCCACCAGGTGACCCCAG 60.529 66.667 22.37 2.86 35.23 4.45
3044 4411 3.650950 CCACCAGGTGACCCCAGG 61.651 72.222 22.37 0.16 45.41 4.45
3045 4412 4.351054 CACCAGGTGACCCCAGGC 62.351 72.222 15.35 0.00 43.74 4.85
3064 4431 4.457496 CCGCTGATCCCGTGTGCT 62.457 66.667 0.00 0.00 0.00 4.40
3065 4432 3.190849 CGCTGATCCCGTGTGCTG 61.191 66.667 0.00 0.00 0.00 4.41
3066 4433 3.503363 GCTGATCCCGTGTGCTGC 61.503 66.667 0.00 0.00 0.00 5.25
3067 4434 2.267006 CTGATCCCGTGTGCTGCT 59.733 61.111 0.00 0.00 0.00 4.24
3068 4435 2.046988 TGATCCCGTGTGCTGCTG 60.047 61.111 0.00 0.00 0.00 4.41
3069 4436 3.503363 GATCCCGTGTGCTGCTGC 61.503 66.667 8.89 8.89 40.20 5.25
3070 4437 3.965539 GATCCCGTGTGCTGCTGCT 62.966 63.158 17.00 0.00 40.48 4.24
3071 4438 3.965539 ATCCCGTGTGCTGCTGCTC 62.966 63.158 17.00 13.53 40.48 4.26
3074 4441 3.037833 CGTGTGCTGCTGCTCGAA 61.038 61.111 17.00 0.00 40.48 3.71
3075 4442 2.858868 GTGTGCTGCTGCTCGAAG 59.141 61.111 17.00 0.00 40.48 3.79
3076 4443 3.046087 TGTGCTGCTGCTCGAAGC 61.046 61.111 17.00 2.02 43.82 3.86
3077 4444 2.741598 GTGCTGCTGCTCGAAGCT 60.742 61.111 17.00 0.00 42.97 3.74
3078 4445 2.031616 TGCTGCTGCTCGAAGCTT 59.968 55.556 17.00 0.00 42.97 3.74
3079 4446 2.031516 TGCTGCTGCTCGAAGCTTC 61.032 57.895 16.84 16.84 42.97 3.86
3080 4447 2.748843 GCTGCTGCTCGAAGCTTCC 61.749 63.158 20.62 7.53 42.97 3.46
3081 4448 2.046892 TGCTGCTCGAAGCTTCCC 60.047 61.111 20.62 9.79 42.97 3.97
3082 4449 2.821810 GCTGCTCGAAGCTTCCCC 60.822 66.667 20.62 9.44 42.97 4.81
3083 4450 2.985456 CTGCTCGAAGCTTCCCCT 59.015 61.111 20.62 0.00 42.97 4.79
3084 4451 1.449246 CTGCTCGAAGCTTCCCCTG 60.449 63.158 20.62 6.80 42.97 4.45
3085 4452 2.821810 GCTCGAAGCTTCCCCTGC 60.822 66.667 20.62 14.70 38.45 4.85
3086 4453 2.985456 CTCGAAGCTTCCCCTGCT 59.015 61.111 20.62 0.00 43.32 4.24
3087 4454 1.153469 CTCGAAGCTTCCCCTGCTC 60.153 63.158 20.62 0.00 40.22 4.26
3088 4455 2.510238 CGAAGCTTCCCCTGCTCG 60.510 66.667 20.62 3.18 40.22 5.03
3089 4456 2.821810 GAAGCTTCCCCTGCTCGC 60.822 66.667 15.97 0.00 40.22 5.03
3090 4457 3.612247 GAAGCTTCCCCTGCTCGCA 62.612 63.158 15.97 0.00 40.22 5.10
3091 4458 3.196207 AAGCTTCCCCTGCTCGCAA 62.196 57.895 0.00 0.00 40.22 4.85
3092 4459 3.435186 GCTTCCCCTGCTCGCAAC 61.435 66.667 0.00 0.00 0.00 4.17
3093 4460 2.747855 CTTCCCCTGCTCGCAACC 60.748 66.667 0.00 0.00 0.00 3.77
3094 4461 4.344865 TTCCCCTGCTCGCAACCC 62.345 66.667 0.00 0.00 0.00 4.11
3096 4463 4.785453 CCCCTGCTCGCAACCCTC 62.785 72.222 0.00 0.00 0.00 4.30
3097 4464 3.710722 CCCTGCTCGCAACCCTCT 61.711 66.667 0.00 0.00 0.00 3.69
3098 4465 2.125350 CCTGCTCGCAACCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
3099 4466 2.125350 CTGCTCGCAACCCTCTCC 60.125 66.667 0.00 0.00 0.00 3.71
3100 4467 3.672295 CTGCTCGCAACCCTCTCCC 62.672 68.421 0.00 0.00 0.00 4.30
3101 4468 3.394836 GCTCGCAACCCTCTCCCT 61.395 66.667 0.00 0.00 0.00 4.20
3102 4469 2.960688 GCTCGCAACCCTCTCCCTT 61.961 63.158 0.00 0.00 0.00 3.95
3103 4470 1.219393 CTCGCAACCCTCTCCCTTC 59.781 63.158 0.00 0.00 0.00 3.46
3104 4471 2.245438 CTCGCAACCCTCTCCCTTCC 62.245 65.000 0.00 0.00 0.00 3.46
3105 4472 2.592993 CGCAACCCTCTCCCTTCCA 61.593 63.158 0.00 0.00 0.00 3.53
3106 4473 1.002011 GCAACCCTCTCCCTTCCAC 60.002 63.158 0.00 0.00 0.00 4.02
3107 4474 1.492993 GCAACCCTCTCCCTTCCACT 61.493 60.000 0.00 0.00 0.00 4.00
3108 4475 0.615850 CAACCCTCTCCCTTCCACTC 59.384 60.000 0.00 0.00 0.00 3.51
3109 4476 0.547954 AACCCTCTCCCTTCCACTCC 60.548 60.000 0.00 0.00 0.00 3.85
3110 4477 1.081092 CCCTCTCCCTTCCACTCCA 59.919 63.158 0.00 0.00 0.00 3.86
3111 4478 1.268283 CCCTCTCCCTTCCACTCCAC 61.268 65.000 0.00 0.00 0.00 4.02
3112 4479 1.608717 CCTCTCCCTTCCACTCCACG 61.609 65.000 0.00 0.00 0.00 4.94
3113 4480 1.608717 CTCTCCCTTCCACTCCACGG 61.609 65.000 0.00 0.00 0.00 4.94
3114 4481 3.316573 CTCCCTTCCACTCCACGGC 62.317 68.421 0.00 0.00 0.00 5.68
3115 4482 4.760047 CCCTTCCACTCCACGGCG 62.760 72.222 4.80 4.80 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2048 3283 1.134401 GGTTGATCATCTTGAGCCCGA 60.134 52.381 0.00 0.00 30.48 5.14
2149 3384 2.484264 GAGAAGAAATGAACCCCACACG 59.516 50.000 0.00 0.00 0.00 4.49
2596 3963 4.328983 ACGTACGACCAAAAGCAATATCTG 59.671 41.667 24.41 0.00 0.00 2.90
2597 3964 4.501071 ACGTACGACCAAAAGCAATATCT 58.499 39.130 24.41 0.00 0.00 1.98
2598 3965 4.547587 CGACGTACGACCAAAAGCAATATC 60.548 45.833 24.41 2.37 45.77 1.63
2599 3966 3.305094 CGACGTACGACCAAAAGCAATAT 59.695 43.478 24.41 0.00 45.77 1.28
2600 3967 2.662637 CGACGTACGACCAAAAGCAATA 59.337 45.455 24.41 0.00 45.77 1.90
2601 3968 1.458064 CGACGTACGACCAAAAGCAAT 59.542 47.619 24.41 0.00 45.77 3.56
2602 3969 0.854062 CGACGTACGACCAAAAGCAA 59.146 50.000 24.41 0.00 45.77 3.91
2603 3970 1.550659 GCGACGTACGACCAAAAGCA 61.551 55.000 24.41 0.00 45.77 3.91
2604 3971 1.129209 GCGACGTACGACCAAAAGC 59.871 57.895 24.41 10.42 45.77 3.51
2605 3972 0.706729 GAGCGACGTACGACCAAAAG 59.293 55.000 24.41 3.69 45.77 2.27
2606 3973 0.998226 CGAGCGACGTACGACCAAAA 60.998 55.000 24.41 0.00 45.77 2.44
2607 3974 1.440850 CGAGCGACGTACGACCAAA 60.441 57.895 24.41 0.00 45.77 3.28
2608 3975 2.174107 CGAGCGACGTACGACCAA 59.826 61.111 24.41 0.00 45.77 3.67
2609 3976 3.792047 CCGAGCGACGTACGACCA 61.792 66.667 24.41 0.00 45.77 4.02
2611 3978 3.729906 ATGCCGAGCGACGTACGAC 62.730 63.158 24.41 15.62 45.77 4.34
2612 3979 2.531927 AAATGCCGAGCGACGTACGA 62.532 55.000 24.41 0.00 45.77 3.43
2613 3980 1.680105 AAAATGCCGAGCGACGTACG 61.680 55.000 15.01 15.01 45.66 3.67
2614 3981 0.441145 AAAAATGCCGAGCGACGTAC 59.559 50.000 0.00 0.00 40.78 3.67
2615 3982 0.440758 CAAAAATGCCGAGCGACGTA 59.559 50.000 0.00 0.00 40.78 3.57
2616 3983 1.206578 CAAAAATGCCGAGCGACGT 59.793 52.632 0.00 0.00 40.78 4.34
2617 3984 2.145905 GCAAAAATGCCGAGCGACG 61.146 57.895 0.00 0.00 42.18 5.12
2618 3985 0.662970 TTGCAAAAATGCCGAGCGAC 60.663 50.000 0.00 0.00 0.00 5.19
2619 3986 0.031314 TTTGCAAAAATGCCGAGCGA 59.969 45.000 10.02 0.00 0.00 4.93
2620 3987 0.857935 TTTTGCAAAAATGCCGAGCG 59.142 45.000 21.94 0.00 0.00 5.03
2621 3988 3.484065 GCTATTTTGCAAAAATGCCGAGC 60.484 43.478 27.10 21.54 0.00 5.03
2622 3989 3.062504 GGCTATTTTGCAAAAATGCCGAG 59.937 43.478 34.51 22.91 39.05 4.63
2623 3990 2.999355 GGCTATTTTGCAAAAATGCCGA 59.001 40.909 34.51 15.17 39.05 5.54
2624 3991 2.095692 GGGCTATTTTGCAAAAATGCCG 59.904 45.455 36.89 23.24 44.18 5.69
2625 3992 3.346315 AGGGCTATTTTGCAAAAATGCC 58.654 40.909 37.00 37.00 43.36 4.40
2626 3993 4.216042 ACAAGGGCTATTTTGCAAAAATGC 59.784 37.500 28.83 28.83 32.92 3.56
2627 3994 5.945466 ACAAGGGCTATTTTGCAAAAATG 57.055 34.783 27.10 21.63 34.04 2.32
2628 3995 6.768483 ACTACAAGGGCTATTTTGCAAAAAT 58.232 32.000 27.10 17.47 34.04 1.82
2629 3996 6.168270 ACTACAAGGGCTATTTTGCAAAAA 57.832 33.333 27.10 15.47 34.04 1.94
2630 3997 5.799827 ACTACAAGGGCTATTTTGCAAAA 57.200 34.783 25.76 25.76 34.04 2.44
2631 3998 5.799827 AACTACAAGGGCTATTTTGCAAA 57.200 34.783 8.05 8.05 34.04 3.68
2632 3999 5.799827 AAACTACAAGGGCTATTTTGCAA 57.200 34.783 0.00 0.00 34.04 4.08
2633 4000 6.242396 TCTAAACTACAAGGGCTATTTTGCA 58.758 36.000 0.00 0.00 34.04 4.08
2634 4001 6.374613 ACTCTAAACTACAAGGGCTATTTTGC 59.625 38.462 0.00 0.00 0.00 3.68
2635 4002 7.923414 ACTCTAAACTACAAGGGCTATTTTG 57.077 36.000 0.00 0.00 0.00 2.44
2637 4004 9.833917 GAATACTCTAAACTACAAGGGCTATTT 57.166 33.333 0.00 0.00 0.00 1.40
2638 4005 8.989131 TGAATACTCTAAACTACAAGGGCTATT 58.011 33.333 0.00 0.00 0.00 1.73
2639 4006 8.548880 TGAATACTCTAAACTACAAGGGCTAT 57.451 34.615 0.00 0.00 0.00 2.97
2640 4007 7.966339 TGAATACTCTAAACTACAAGGGCTA 57.034 36.000 0.00 0.00 0.00 3.93
2641 4008 6.869206 TGAATACTCTAAACTACAAGGGCT 57.131 37.500 0.00 0.00 0.00 5.19
2642 4009 6.315642 GGTTGAATACTCTAAACTACAAGGGC 59.684 42.308 0.00 0.00 0.00 5.19
2643 4010 6.822170 GGGTTGAATACTCTAAACTACAAGGG 59.178 42.308 0.00 0.00 0.00 3.95
2644 4011 6.534079 CGGGTTGAATACTCTAAACTACAAGG 59.466 42.308 0.00 0.00 0.00 3.61
2645 4012 6.035758 GCGGGTTGAATACTCTAAACTACAAG 59.964 42.308 0.00 0.00 0.00 3.16
2646 4013 5.870978 GCGGGTTGAATACTCTAAACTACAA 59.129 40.000 0.00 0.00 0.00 2.41
2647 4014 5.047164 TGCGGGTTGAATACTCTAAACTACA 60.047 40.000 0.00 0.00 0.00 2.74
2648 4015 5.413499 TGCGGGTTGAATACTCTAAACTAC 58.587 41.667 0.00 0.00 0.00 2.73
2649 4016 5.186409 ACTGCGGGTTGAATACTCTAAACTA 59.814 40.000 0.00 0.00 0.00 2.24
2650 4017 4.020485 ACTGCGGGTTGAATACTCTAAACT 60.020 41.667 0.00 0.00 0.00 2.66
2651 4018 4.251268 ACTGCGGGTTGAATACTCTAAAC 58.749 43.478 0.00 0.00 0.00 2.01
2652 4019 4.501071 GACTGCGGGTTGAATACTCTAAA 58.499 43.478 0.00 0.00 0.00 1.85
2653 4020 3.118884 GGACTGCGGGTTGAATACTCTAA 60.119 47.826 0.00 0.00 0.00 2.10
2654 4021 2.429610 GGACTGCGGGTTGAATACTCTA 59.570 50.000 0.00 0.00 0.00 2.43
2655 4022 1.207329 GGACTGCGGGTTGAATACTCT 59.793 52.381 0.00 0.00 0.00 3.24
2656 4023 1.066430 TGGACTGCGGGTTGAATACTC 60.066 52.381 0.00 0.00 0.00 2.59
2657 4024 0.981183 TGGACTGCGGGTTGAATACT 59.019 50.000 0.00 0.00 0.00 2.12
2658 4025 2.038387 ATGGACTGCGGGTTGAATAC 57.962 50.000 0.00 0.00 0.00 1.89
2659 4026 5.554437 TTATATGGACTGCGGGTTGAATA 57.446 39.130 0.00 0.00 0.00 1.75
2660 4027 4.431416 TTATATGGACTGCGGGTTGAAT 57.569 40.909 0.00 0.00 0.00 2.57
2661 4028 3.916359 TTATATGGACTGCGGGTTGAA 57.084 42.857 0.00 0.00 0.00 2.69
2662 4029 3.916359 TTTATATGGACTGCGGGTTGA 57.084 42.857 0.00 0.00 0.00 3.18
2663 4030 3.945285 ACTTTTATATGGACTGCGGGTTG 59.055 43.478 0.00 0.00 0.00 3.77
2664 4031 4.230745 ACTTTTATATGGACTGCGGGTT 57.769 40.909 0.00 0.00 0.00 4.11
2665 4032 3.926058 ACTTTTATATGGACTGCGGGT 57.074 42.857 0.00 0.00 0.00 5.28
2666 4033 5.008316 GGTTAACTTTTATATGGACTGCGGG 59.992 44.000 5.42 0.00 0.00 6.13
2667 4034 5.277154 CGGTTAACTTTTATATGGACTGCGG 60.277 44.000 5.42 0.00 0.00 5.69
2668 4035 5.521010 TCGGTTAACTTTTATATGGACTGCG 59.479 40.000 5.42 0.00 0.00 5.18
2669 4036 6.913873 TCGGTTAACTTTTATATGGACTGC 57.086 37.500 5.42 0.00 0.00 4.40
2670 4037 7.464977 CGGTTCGGTTAACTTTTATATGGACTG 60.465 40.741 5.42 0.00 38.23 3.51
2671 4038 6.536224 CGGTTCGGTTAACTTTTATATGGACT 59.464 38.462 5.42 0.00 38.23 3.85
2672 4039 6.238184 CCGGTTCGGTTAACTTTTATATGGAC 60.238 42.308 5.42 0.00 42.73 4.02
2673 4040 5.816777 CCGGTTCGGTTAACTTTTATATGGA 59.183 40.000 5.42 0.00 42.73 3.41
2674 4041 6.051646 CCGGTTCGGTTAACTTTTATATGG 57.948 41.667 5.42 0.00 42.73 2.74
2690 4057 3.581755 TCTTTTATCTCACACCGGTTCG 58.418 45.455 2.97 0.00 0.00 3.95
2691 4058 5.934935 TTTCTTTTATCTCACACCGGTTC 57.065 39.130 2.97 0.00 0.00 3.62
2692 4059 6.544564 TCTTTTTCTTTTATCTCACACCGGTT 59.455 34.615 2.97 0.00 0.00 4.44
2693 4060 6.059484 TCTTTTTCTTTTATCTCACACCGGT 58.941 36.000 0.00 0.00 0.00 5.28
2694 4061 6.554334 TCTTTTTCTTTTATCTCACACCGG 57.446 37.500 0.00 0.00 0.00 5.28
2695 4062 7.861630 TCTTCTTTTTCTTTTATCTCACACCG 58.138 34.615 0.00 0.00 0.00 4.94
2721 4088 0.698818 AGATCGGGAGGCAGGTTTTT 59.301 50.000 0.00 0.00 0.00 1.94
2722 4089 0.253327 GAGATCGGGAGGCAGGTTTT 59.747 55.000 0.00 0.00 0.00 2.43
2723 4090 0.909610 TGAGATCGGGAGGCAGGTTT 60.910 55.000 0.00 0.00 0.00 3.27
2724 4091 0.692419 ATGAGATCGGGAGGCAGGTT 60.692 55.000 0.00 0.00 0.00 3.50
2725 4092 1.074926 ATGAGATCGGGAGGCAGGT 60.075 57.895 0.00 0.00 0.00 4.00
2726 4093 3.882825 ATGAGATCGGGAGGCAGG 58.117 61.111 0.00 0.00 0.00 4.85
2982 4349 3.086600 GCTCAGGGTCCAGGGGAG 61.087 72.222 0.00 0.00 29.39 4.30
3006 4373 3.541713 CTCGAGGGTGGCTAGGGC 61.542 72.222 3.91 0.00 37.82 5.19
3007 4374 3.541713 GCTCGAGGGTGGCTAGGG 61.542 72.222 15.58 0.00 0.00 3.53
3008 4375 3.541713 GGCTCGAGGGTGGCTAGG 61.542 72.222 15.58 0.00 0.00 3.02
3009 4376 2.443016 AGGCTCGAGGGTGGCTAG 60.443 66.667 15.58 0.00 40.30 3.42
3010 4377 2.442272 GAGGCTCGAGGGTGGCTA 60.442 66.667 15.58 0.00 41.88 3.93
3013 4380 3.775654 GTGGAGGCTCGAGGGTGG 61.776 72.222 15.58 0.00 0.00 4.61
3014 4381 3.775654 GGTGGAGGCTCGAGGGTG 61.776 72.222 15.58 0.00 0.00 4.61
3015 4382 4.316823 TGGTGGAGGCTCGAGGGT 62.317 66.667 15.58 0.00 0.00 4.34
3016 4383 3.465403 CTGGTGGAGGCTCGAGGG 61.465 72.222 15.58 0.00 0.00 4.30
3017 4384 3.465403 CCTGGTGGAGGCTCGAGG 61.465 72.222 15.58 7.22 34.01 4.63
3025 4392 2.529136 TGGGGTCACCTGGTGGAG 60.529 66.667 25.67 1.33 41.11 3.86
3026 4393 2.529136 CTGGGGTCACCTGGTGGA 60.529 66.667 25.67 10.55 41.11 4.02
3047 4414 4.457496 AGCACACGGGATCAGCGG 62.457 66.667 0.00 0.00 0.00 5.52
3048 4415 3.190849 CAGCACACGGGATCAGCG 61.191 66.667 0.00 0.00 0.00 5.18
3049 4416 3.503363 GCAGCACACGGGATCAGC 61.503 66.667 0.00 0.00 0.00 4.26
3050 4417 2.104859 CAGCAGCACACGGGATCAG 61.105 63.158 0.00 0.00 0.00 2.90
3051 4418 2.046988 CAGCAGCACACGGGATCA 60.047 61.111 0.00 0.00 0.00 2.92
3052 4419 3.503363 GCAGCAGCACACGGGATC 61.503 66.667 0.00 0.00 41.58 3.36
3053 4420 3.965539 GAGCAGCAGCACACGGGAT 62.966 63.158 3.17 0.00 45.49 3.85
3054 4421 4.687215 GAGCAGCAGCACACGGGA 62.687 66.667 3.17 0.00 45.49 5.14
3057 4424 3.008240 CTTCGAGCAGCAGCACACG 62.008 63.158 3.17 6.45 45.49 4.49
3058 4425 2.858868 CTTCGAGCAGCAGCACAC 59.141 61.111 3.17 0.00 45.49 3.82
3059 4426 3.046087 GCTTCGAGCAGCAGCACA 61.046 61.111 3.17 0.00 45.49 4.57
3060 4427 2.238071 GAAGCTTCGAGCAGCAGCAC 62.238 60.000 11.40 0.00 45.56 4.40
3061 4428 2.031516 GAAGCTTCGAGCAGCAGCA 61.032 57.895 11.40 0.00 45.56 4.41
3062 4429 2.748843 GGAAGCTTCGAGCAGCAGC 61.749 63.158 19.91 4.93 45.56 5.25
3063 4430 2.105466 GGGAAGCTTCGAGCAGCAG 61.105 63.158 19.91 0.00 45.56 4.24
3064 4431 2.046892 GGGAAGCTTCGAGCAGCA 60.047 61.111 19.91 0.00 45.56 4.41
3065 4432 2.821810 GGGGAAGCTTCGAGCAGC 60.822 66.667 19.91 0.62 45.56 5.25
3066 4433 1.449246 CAGGGGAAGCTTCGAGCAG 60.449 63.158 19.91 5.39 45.56 4.24
3067 4434 2.665000 CAGGGGAAGCTTCGAGCA 59.335 61.111 19.91 0.00 45.56 4.26
3068 4435 2.821810 GCAGGGGAAGCTTCGAGC 60.822 66.667 19.91 15.90 42.84 5.03
3069 4436 1.153469 GAGCAGGGGAAGCTTCGAG 60.153 63.158 19.91 10.42 43.58 4.04
3070 4437 2.982130 GAGCAGGGGAAGCTTCGA 59.018 61.111 19.91 0.00 43.58 3.71
3071 4438 2.510238 CGAGCAGGGGAAGCTTCG 60.510 66.667 19.91 7.50 43.58 3.79
3072 4439 2.821810 GCGAGCAGGGGAAGCTTC 60.822 66.667 18.54 18.54 43.58 3.86
3073 4440 3.196207 TTGCGAGCAGGGGAAGCTT 62.196 57.895 0.00 0.00 43.58 3.74
3074 4441 3.640407 TTGCGAGCAGGGGAAGCT 61.640 61.111 0.00 0.00 46.82 3.74
3075 4442 3.435186 GTTGCGAGCAGGGGAAGC 61.435 66.667 0.00 0.00 0.00 3.86
3076 4443 2.747855 GGTTGCGAGCAGGGGAAG 60.748 66.667 0.00 0.00 0.00 3.46
3077 4444 4.344865 GGGTTGCGAGCAGGGGAA 62.345 66.667 5.33 0.00 0.00 3.97
3079 4446 4.785453 GAGGGTTGCGAGCAGGGG 62.785 72.222 5.33 0.00 0.00 4.79
3080 4447 3.672295 GAGAGGGTTGCGAGCAGGG 62.672 68.421 5.33 0.00 0.00 4.45
3081 4448 2.125350 GAGAGGGTTGCGAGCAGG 60.125 66.667 5.33 0.00 0.00 4.85
3082 4449 2.125350 GGAGAGGGTTGCGAGCAG 60.125 66.667 5.33 0.00 0.00 4.24
3083 4450 3.706373 GGGAGAGGGTTGCGAGCA 61.706 66.667 5.33 0.00 0.00 4.26
3084 4451 2.860972 GAAGGGAGAGGGTTGCGAGC 62.861 65.000 0.00 0.00 0.00 5.03
3085 4452 1.219393 GAAGGGAGAGGGTTGCGAG 59.781 63.158 0.00 0.00 0.00 5.03
3086 4453 2.291043 GGAAGGGAGAGGGTTGCGA 61.291 63.158 0.00 0.00 0.00 5.10
3087 4454 2.269241 GGAAGGGAGAGGGTTGCG 59.731 66.667 0.00 0.00 0.00 4.85
3088 4455 1.002011 GTGGAAGGGAGAGGGTTGC 60.002 63.158 0.00 0.00 0.00 4.17
3089 4456 0.615850 GAGTGGAAGGGAGAGGGTTG 59.384 60.000 0.00 0.00 0.00 3.77
3090 4457 0.547954 GGAGTGGAAGGGAGAGGGTT 60.548 60.000 0.00 0.00 0.00 4.11
3091 4458 1.081277 GGAGTGGAAGGGAGAGGGT 59.919 63.158 0.00 0.00 0.00 4.34
3092 4459 1.081092 TGGAGTGGAAGGGAGAGGG 59.919 63.158 0.00 0.00 0.00 4.30
3093 4460 1.608717 CGTGGAGTGGAAGGGAGAGG 61.609 65.000 0.00 0.00 0.00 3.69
3094 4461 1.608717 CCGTGGAGTGGAAGGGAGAG 61.609 65.000 0.00 0.00 0.00 3.20
3095 4462 1.609501 CCGTGGAGTGGAAGGGAGA 60.610 63.158 0.00 0.00 0.00 3.71
3096 4463 2.982130 CCGTGGAGTGGAAGGGAG 59.018 66.667 0.00 0.00 0.00 4.30
3097 4464 3.319198 GCCGTGGAGTGGAAGGGA 61.319 66.667 0.00 0.00 0.00 4.20
3098 4465 4.760047 CGCCGTGGAGTGGAAGGG 62.760 72.222 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.