Multiple sequence alignment - TraesCS5B01G257300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G257300 chr5B 100.000 6302 0 0 1 6302 439728593 439722292 0.000000e+00 11638.0
1 TraesCS5B01G257300 chr5B 88.889 63 3 2 5361 5423 536836140 536836082 2.440000e-09 75.0
2 TraesCS5B01G257300 chr5B 95.455 44 2 0 5346 5389 449743930 449743973 3.150000e-08 71.3
3 TraesCS5B01G257300 chr5A 91.254 2847 143 39 2694 5461 473023437 473020618 0.000000e+00 3781.0
4 TraesCS5B01G257300 chr5A 85.264 2314 156 76 422 2632 473025776 473023545 0.000000e+00 2213.0
5 TraesCS5B01G257300 chr5A 86.098 410 49 6 1 406 473026286 473025881 9.700000e-118 435.0
6 TraesCS5B01G257300 chr5A 86.056 251 35 0 143 393 546409075 546408825 2.900000e-68 270.0
7 TraesCS5B01G257300 chr5D 89.530 2875 131 51 2661 5461 370470759 370467981 0.000000e+00 3485.0
8 TraesCS5B01G257300 chr5D 89.094 1357 83 29 1294 2632 370472146 370470837 0.000000e+00 1626.0
9 TraesCS5B01G257300 chr5D 87.002 854 84 14 5472 6302 563999698 563998849 0.000000e+00 937.0
10 TraesCS5B01G257300 chr5D 89.929 705 71 0 5598 6302 502076915 502076211 0.000000e+00 909.0
11 TraesCS5B01G257300 chr5D 90.028 702 68 2 5602 6302 456097237 456097937 0.000000e+00 907.0
12 TraesCS5B01G257300 chr5D 88.296 769 37 25 485 1232 370472967 370472231 0.000000e+00 872.0
13 TraesCS5B01G257300 chr5D 85.915 71 5 3 5343 5409 92463315 92463384 3.150000e-08 71.3
14 TraesCS5B01G257300 chr5D 89.091 55 4 2 5346 5400 376654374 376654426 4.080000e-07 67.6
15 TraesCS5B01G257300 chr3D 89.436 833 82 6 5472 6302 90834575 90833747 0.000000e+00 1046.0
16 TraesCS5B01G257300 chr7D 91.483 681 57 1 5622 6302 469201155 469200476 0.000000e+00 935.0
17 TraesCS5B01G257300 chr7D 85.902 837 101 7 5468 6302 88727819 88726998 0.000000e+00 876.0
18 TraesCS5B01G257300 chr7D 93.023 43 3 0 5347 5389 618868750 618868792 5.270000e-06 63.9
19 TraesCS5B01G257300 chr1D 86.737 852 90 10 5469 6302 26697193 26698039 0.000000e+00 926.0
20 TraesCS5B01G257300 chr1D 86.454 251 32 2 143 393 307205195 307205443 2.240000e-69 274.0
21 TraesCS5B01G257300 chr1D 93.023 43 3 0 5347 5389 372837028 372837070 5.270000e-06 63.9
22 TraesCS5B01G257300 chr2B 90.085 706 69 1 5598 6302 545174011 545174716 0.000000e+00 915.0
23 TraesCS5B01G257300 chr2B 86.839 813 94 8 5492 6302 55925974 55926775 0.000000e+00 896.0
24 TraesCS5B01G257300 chr4B 86.467 835 107 6 5472 6302 70599950 70599118 0.000000e+00 911.0
25 TraesCS5B01G257300 chr4B 85.950 242 34 0 152 393 626360939 626360698 6.270000e-65 259.0
26 TraesCS5B01G257300 chr4A 86.905 252 32 1 142 393 345965643 345965393 1.340000e-71 281.0
27 TraesCS5B01G257300 chr2A 84.825 257 36 3 139 393 41159248 41158993 8.110000e-64 255.0
28 TraesCS5B01G257300 chr3A 80.000 375 47 16 5492 5856 458668574 458668930 1.050000e-62 252.0
29 TraesCS5B01G257300 chr3A 84.585 253 37 2 143 393 649846233 649846485 3.770000e-62 250.0
30 TraesCS5B01G257300 chr3A 100.000 30 0 0 5394 5423 624641891 624641862 8.830000e-04 56.5
31 TraesCS5B01G257300 chr1A 84.436 257 36 4 139 393 483817203 483816949 3.770000e-62 250.0
32 TraesCS5B01G257300 chr2D 84.462 251 39 0 143 393 380830399 380830149 1.360000e-61 248.0
33 TraesCS5B01G257300 chr7B 93.023 43 3 0 5348 5390 483866419 483866461 5.270000e-06 63.9
34 TraesCS5B01G257300 chr7B 93.023 43 3 0 5347 5389 651450502 651450544 5.270000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G257300 chr5B 439722292 439728593 6301 True 11638.000000 11638 100.000000 1 6302 1 chr5B.!!$R1 6301
1 TraesCS5B01G257300 chr5A 473020618 473026286 5668 True 2143.000000 3781 87.538667 1 5461 3 chr5A.!!$R2 5460
2 TraesCS5B01G257300 chr5D 370467981 370472967 4986 True 1994.333333 3485 88.973333 485 5461 3 chr5D.!!$R3 4976
3 TraesCS5B01G257300 chr5D 563998849 563999698 849 True 937.000000 937 87.002000 5472 6302 1 chr5D.!!$R2 830
4 TraesCS5B01G257300 chr5D 502076211 502076915 704 True 909.000000 909 89.929000 5598 6302 1 chr5D.!!$R1 704
5 TraesCS5B01G257300 chr5D 456097237 456097937 700 False 907.000000 907 90.028000 5602 6302 1 chr5D.!!$F3 700
6 TraesCS5B01G257300 chr3D 90833747 90834575 828 True 1046.000000 1046 89.436000 5472 6302 1 chr3D.!!$R1 830
7 TraesCS5B01G257300 chr7D 469200476 469201155 679 True 935.000000 935 91.483000 5622 6302 1 chr7D.!!$R2 680
8 TraesCS5B01G257300 chr7D 88726998 88727819 821 True 876.000000 876 85.902000 5468 6302 1 chr7D.!!$R1 834
9 TraesCS5B01G257300 chr1D 26697193 26698039 846 False 926.000000 926 86.737000 5469 6302 1 chr1D.!!$F1 833
10 TraesCS5B01G257300 chr2B 545174011 545174716 705 False 915.000000 915 90.085000 5598 6302 1 chr2B.!!$F2 704
11 TraesCS5B01G257300 chr2B 55925974 55926775 801 False 896.000000 896 86.839000 5492 6302 1 chr2B.!!$F1 810
12 TraesCS5B01G257300 chr4B 70599118 70599950 832 True 911.000000 911 86.467000 5472 6302 1 chr4B.!!$R1 830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 980 0.035881 TTGAGTTGGAGCAGAGCCAG 59.964 55.0 0.00 0.0 36.64 4.85 F
1903 2139 0.107066 TGCCATGATGTAGCCCAGTG 60.107 55.0 0.00 0.0 0.00 3.66 F
1939 2182 0.036388 CGGTCTGTGTACTGCCCATT 60.036 55.0 0.00 0.0 0.00 3.16 F
2971 3276 0.038435 TGATGCGGCACATGGTTTTG 60.038 50.0 4.03 0.0 39.84 2.44 F
3876 4194 0.460311 CGCTCAGGTATCCCTTCGTT 59.540 55.0 0.00 0.0 39.89 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2156 0.036388 AATGGGCAGTACACAGACCG 60.036 55.000 0.00 0.00 32.39 4.79 R
3296 3602 0.771127 CAGAGTGGGGTTGGAAGGAA 59.229 55.000 0.00 0.00 0.00 3.36 R
3450 3768 1.206849 ACTGGTTTTGGTGGCAAACAG 59.793 47.619 0.00 0.00 36.07 3.16 R
4892 5237 0.949397 CCTGCATCATTGACGGATGG 59.051 55.000 0.00 0.00 41.87 3.51 R
5586 5985 0.391661 GGTCGAAATCAGCAGCTGGA 60.392 55.000 22.62 8.35 31.51 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.307032 AAGTTGCTTATCCATGGTCTGT 57.693 40.909 12.58 0.00 0.00 3.41
49 51 3.291585 CGTGTGTGCAATGACTTTTCTC 58.708 45.455 0.00 0.00 0.00 2.87
52 54 3.947196 TGTGTGCAATGACTTTTCTCAGT 59.053 39.130 0.00 0.00 0.00 3.41
59 61 6.183360 TGCAATGACTTTTCTCAGTGATTTGT 60.183 34.615 0.00 0.00 38.29 2.83
86 90 6.207221 GGGACAAAAAGGAAAAATCATTGCAT 59.793 34.615 0.00 0.00 0.00 3.96
144 148 5.410746 CACATACCATGAGGAATCATGCTAC 59.589 44.000 11.82 0.00 44.39 3.58
148 152 3.324117 CATGAGGAATCATGCTACTCCG 58.676 50.000 5.38 0.00 40.62 4.63
149 153 1.688735 TGAGGAATCATGCTACTCCGG 59.311 52.381 0.00 0.00 32.91 5.14
159 163 2.284112 TACTCCGGCCGGTCCTTT 60.284 61.111 41.57 24.04 36.47 3.11
161 165 1.891722 TACTCCGGCCGGTCCTTTTC 61.892 60.000 41.57 0.00 36.47 2.29
163 167 2.746277 CCGGCCGGTCCTTTTCAG 60.746 66.667 36.64 6.12 0.00 3.02
165 169 2.033194 CGGCCGGTCCTTTTCAGTC 61.033 63.158 20.10 0.00 0.00 3.51
179 183 9.547753 GTCCTTTTCAGTCTGCATATTAGATTA 57.452 33.333 0.00 0.00 0.00 1.75
425 459 4.215742 CCGACCCTCCGCGCATTA 62.216 66.667 8.75 0.00 0.00 1.90
450 543 0.238553 GTCTCTTTTGCAACCCGCTC 59.761 55.000 0.00 0.00 43.06 5.03
451 544 0.889186 TCTCTTTTGCAACCCGCTCC 60.889 55.000 0.00 0.00 43.06 4.70
492 585 3.455177 CCCATCCATCCATCTAGATCAGG 59.545 52.174 1.03 2.29 0.00 3.86
562 661 1.403249 GCTGCGCAAGAAATGGTTGAT 60.403 47.619 13.05 0.00 43.02 2.57
593 692 2.641305 CTCCCTCTGCTTTCTTCCATG 58.359 52.381 0.00 0.00 0.00 3.66
602 701 0.178938 TTTCTTCCATGGCCAAGGCA 60.179 50.000 22.59 11.02 44.11 4.75
650 749 3.007635 ACTAATCGCAGGGTAAAAGCAC 58.992 45.455 0.00 0.00 0.00 4.40
653 752 0.394938 TCGCAGGGTAAAAGCACAGA 59.605 50.000 0.00 0.00 0.00 3.41
654 753 1.003118 TCGCAGGGTAAAAGCACAGAT 59.997 47.619 0.00 0.00 0.00 2.90
656 755 3.006940 CGCAGGGTAAAAGCACAGATTA 58.993 45.455 0.00 0.00 0.00 1.75
657 756 3.627577 CGCAGGGTAAAAGCACAGATTAT 59.372 43.478 0.00 0.00 0.00 1.28
658 757 4.260784 CGCAGGGTAAAAGCACAGATTATC 60.261 45.833 0.00 0.00 0.00 1.75
702 802 3.517296 TCAGCCTCCACCATACAAAAA 57.483 42.857 0.00 0.00 0.00 1.94
734 834 1.349026 ACGACCATCCATCCATCCATC 59.651 52.381 0.00 0.00 0.00 3.51
736 836 1.706866 GACCATCCATCCATCCATCCA 59.293 52.381 0.00 0.00 0.00 3.41
737 837 2.310945 GACCATCCATCCATCCATCCAT 59.689 50.000 0.00 0.00 0.00 3.41
738 838 2.042569 ACCATCCATCCATCCATCCATG 59.957 50.000 0.00 0.00 0.00 3.66
739 839 2.100197 CATCCATCCATCCATCCATGC 58.900 52.381 0.00 0.00 0.00 4.06
740 840 0.406750 TCCATCCATCCATCCATGCC 59.593 55.000 0.00 0.00 0.00 4.40
741 841 0.113580 CCATCCATCCATCCATGCCA 59.886 55.000 0.00 0.00 0.00 4.92
742 842 1.545841 CATCCATCCATCCATGCCAG 58.454 55.000 0.00 0.00 0.00 4.85
745 845 1.461091 CCATCCATCCATGCCAGCAC 61.461 60.000 0.00 0.00 0.00 4.40
746 846 0.753848 CATCCATCCATGCCAGCACA 60.754 55.000 0.00 0.00 0.00 4.57
747 847 0.754217 ATCCATCCATGCCAGCACAC 60.754 55.000 0.00 0.00 0.00 3.82
749 849 1.663379 CCATCCATGCCAGCACACAG 61.663 60.000 0.00 0.00 0.00 3.66
751 851 0.251474 ATCCATGCCAGCACACAGTT 60.251 50.000 0.00 0.00 0.00 3.16
752 852 1.174078 TCCATGCCAGCACACAGTTG 61.174 55.000 0.00 0.00 0.00 3.16
753 853 1.457823 CCATGCCAGCACACAGTTGT 61.458 55.000 0.00 0.00 35.84 3.32
782 882 9.783256 GTACACAAAAATACAAACTTTCAGAGT 57.217 29.630 0.00 0.00 41.47 3.24
806 906 8.141268 AGTATAACTCTTCTCATTTAGAGCAGC 58.859 37.037 0.00 0.00 44.35 5.25
823 923 4.176271 AGCAGCAGAGAAAACAAACAAAC 58.824 39.130 0.00 0.00 0.00 2.93
877 978 0.036022 AGTTGAGTTGGAGCAGAGCC 59.964 55.000 0.00 0.00 0.00 4.70
878 979 0.250467 GTTGAGTTGGAGCAGAGCCA 60.250 55.000 0.00 0.00 0.00 4.75
879 980 0.035881 TTGAGTTGGAGCAGAGCCAG 59.964 55.000 0.00 0.00 36.64 4.85
881 982 2.749441 GTTGGAGCAGAGCCAGCC 60.749 66.667 0.00 0.00 36.64 4.85
882 983 4.039092 TTGGAGCAGAGCCAGCCC 62.039 66.667 0.00 0.00 36.64 5.19
884 985 4.792804 GGAGCAGAGCCAGCCCAC 62.793 72.222 0.00 0.00 0.00 4.61
912 1029 0.819666 GCAACGGAATCATCCTCCCC 60.820 60.000 0.00 0.00 44.17 4.81
913 1030 0.839946 CAACGGAATCATCCTCCCCT 59.160 55.000 0.00 0.00 44.17 4.79
1064 1193 4.645809 GGCACCTCCACAATCTCC 57.354 61.111 0.00 0.00 34.01 3.71
1121 1250 0.319405 GTTCCTCGTTTTCCGGGAGA 59.681 55.000 0.00 0.00 40.44 3.71
1142 1271 1.454539 CCGGGGGAGTTGTTCTTGT 59.545 57.895 0.00 0.00 0.00 3.16
1172 1306 3.208335 GTCCAGACCTACCCTCGC 58.792 66.667 0.00 0.00 0.00 5.03
1233 1367 4.890306 GGCTCCCTCCCTCCCTCC 62.890 77.778 0.00 0.00 0.00 4.30
1234 1368 4.890306 GCTCCCTCCCTCCCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
1235 1369 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
1257 1426 0.895559 CTTCTTGGTTGGTGGGAGGC 60.896 60.000 0.00 0.00 0.00 4.70
1261 1430 2.359975 GGTTGGTGGGAGGCGAAG 60.360 66.667 0.00 0.00 0.00 3.79
1262 1431 2.747686 GTTGGTGGGAGGCGAAGA 59.252 61.111 0.00 0.00 0.00 2.87
1274 1461 3.063588 GGAGGCGAAGAAATTTTAGGTCG 59.936 47.826 0.00 1.16 0.00 4.79
1276 1463 3.683340 AGGCGAAGAAATTTTAGGTCGTC 59.317 43.478 9.11 9.11 33.52 4.20
1287 1474 4.368543 GGTCGTCCGGTTTCGCCT 62.369 66.667 0.00 0.00 34.25 5.52
1372 1584 1.087501 GTCCATCCGCCTTCTGTTTC 58.912 55.000 0.00 0.00 0.00 2.78
1387 1599 0.249676 GTTTCGGGGGAGGAGAAGAC 59.750 60.000 0.00 0.00 0.00 3.01
1399 1611 2.761208 AGGAGAAGACGGATCAATCGTT 59.239 45.455 0.00 0.00 41.22 3.85
1414 1626 2.260844 TCGTTCGGTATCGGAGGTAT 57.739 50.000 0.00 0.00 36.95 2.73
1417 1629 1.876156 GTTCGGTATCGGAGGTATCGT 59.124 52.381 0.00 0.00 36.95 3.73
1424 1636 1.386533 TCGGAGGTATCGTCCACTTC 58.613 55.000 8.77 0.00 38.20 3.01
1426 1638 1.681793 CGGAGGTATCGTCCACTTCAT 59.318 52.381 8.77 0.00 38.20 2.57
1462 1674 4.560128 GGCATTTCTTCCTTTTCTTGTCC 58.440 43.478 0.00 0.00 0.00 4.02
1476 1688 0.444651 TTGTCCGCCTTTATTTCGCG 59.555 50.000 0.00 0.00 45.32 5.87
1492 1704 1.161843 CGCGGGGTTTGTTTGTCTAT 58.838 50.000 0.00 0.00 0.00 1.98
1493 1705 2.028294 TCGCGGGGTTTGTTTGTCTATA 60.028 45.455 6.13 0.00 0.00 1.31
1496 1708 4.025480 CGCGGGGTTTGTTTGTCTATATAC 60.025 45.833 0.00 0.00 0.00 1.47
1498 1710 5.235831 GCGGGGTTTGTTTGTCTATATACTC 59.764 44.000 0.00 0.00 0.00 2.59
1499 1711 5.461078 CGGGGTTTGTTTGTCTATATACTCG 59.539 44.000 0.00 0.00 0.00 4.18
1500 1712 6.343703 GGGGTTTGTTTGTCTATATACTCGT 58.656 40.000 0.00 0.00 0.00 4.18
1529 1749 2.124901 ATTCGGCGCCGGAATTGA 60.125 55.556 44.95 25.20 40.25 2.57
1533 1753 2.760159 CGGCGCCGGAATTGATTGT 61.760 57.895 40.50 0.00 35.56 2.71
1575 1796 1.874739 CGAGACGGGTTGGCTGTAAAA 60.875 52.381 0.00 0.00 0.00 1.52
1624 1845 4.397417 CCCATTTCAGTCATGGTTTCTCTC 59.603 45.833 0.00 0.00 39.86 3.20
1625 1846 5.251764 CCATTTCAGTCATGGTTTCTCTCT 58.748 41.667 0.00 0.00 37.07 3.10
1627 1848 5.815233 TTTCAGTCATGGTTTCTCTCTCT 57.185 39.130 0.00 0.00 0.00 3.10
1632 1853 6.267699 TCAGTCATGGTTTCTCTCTCTAAACA 59.732 38.462 0.00 0.00 37.33 2.83
1633 1854 6.931281 CAGTCATGGTTTCTCTCTCTAAACAA 59.069 38.462 0.00 0.00 37.33 2.83
1634 1855 7.442364 CAGTCATGGTTTCTCTCTCTAAACAAA 59.558 37.037 0.00 0.00 37.33 2.83
1635 1856 7.659390 AGTCATGGTTTCTCTCTCTAAACAAAG 59.341 37.037 0.00 0.00 37.33 2.77
1636 1857 6.936900 TCATGGTTTCTCTCTCTAAACAAAGG 59.063 38.462 0.00 0.00 37.33 3.11
1697 1933 3.822735 ACATCGAAATTGCATCTATGGGG 59.177 43.478 5.58 0.00 0.00 4.96
1704 1940 2.574006 TGCATCTATGGGGATTCAGC 57.426 50.000 0.00 0.00 0.00 4.26
1712 1948 2.514824 GGGATTCAGCTCGTGGCC 60.515 66.667 0.00 0.00 43.05 5.36
1718 1954 4.694233 CAGCTCGTGGCCAGCAGT 62.694 66.667 16.94 0.00 43.05 4.40
1751 1987 7.953158 TTCTCCATTTCATGTCGAATATCTC 57.047 36.000 0.00 0.00 32.32 2.75
1772 2008 4.464008 TCTCCTCTGTTTTCTTGTGCAAT 58.536 39.130 0.00 0.00 0.00 3.56
1783 2019 3.414269 TCTTGTGCAATGATTCAGAGCA 58.586 40.909 10.66 10.66 0.00 4.26
1784 2020 4.014406 TCTTGTGCAATGATTCAGAGCAT 58.986 39.130 15.92 0.00 37.56 3.79
1788 2024 4.885325 TGTGCAATGATTCAGAGCATATGT 59.115 37.500 15.92 0.00 37.56 2.29
1825 2061 2.930040 ACAGCATTTCCGTATGAGTTCG 59.070 45.455 0.00 0.00 0.00 3.95
1826 2062 2.930040 CAGCATTTCCGTATGAGTTCGT 59.070 45.455 0.00 0.00 0.00 3.85
1827 2063 3.370978 CAGCATTTCCGTATGAGTTCGTT 59.629 43.478 0.00 0.00 0.00 3.85
1828 2064 3.617263 AGCATTTCCGTATGAGTTCGTTC 59.383 43.478 0.00 0.00 0.00 3.95
1840 2076 5.917541 TGAGTTCGTTCAGTGGTTTAATC 57.082 39.130 0.00 0.00 0.00 1.75
1883 2119 6.749923 ATTTGTTTCTTCATCTCTACCTGC 57.250 37.500 0.00 0.00 0.00 4.85
1900 2136 1.152902 GCTGCCATGATGTAGCCCA 60.153 57.895 7.45 0.00 0.00 5.36
1903 2139 0.107066 TGCCATGATGTAGCCCAGTG 60.107 55.000 0.00 0.00 0.00 3.66
1904 2140 0.820891 GCCATGATGTAGCCCAGTGG 60.821 60.000 0.63 0.63 0.00 4.00
1909 2145 2.790433 TGATGTAGCCCAGTGGAAAAC 58.210 47.619 11.95 5.77 0.00 2.43
1920 2156 4.499696 CCCAGTGGAAAACAGAATTGTGTC 60.500 45.833 11.95 0.00 37.67 3.67
1935 2178 0.666577 GTGTCGGTCTGTGTACTGCC 60.667 60.000 0.00 0.00 0.00 4.85
1939 2182 0.036388 CGGTCTGTGTACTGCCCATT 60.036 55.000 0.00 0.00 0.00 3.16
1954 2197 2.435437 GCCCATTTATGATTGGTTGCCT 59.565 45.455 0.00 0.00 0.00 4.75
1959 2202 6.538381 CCCATTTATGATTGGTTGCCTTTTAC 59.462 38.462 0.00 0.00 0.00 2.01
1960 2203 7.330262 CCATTTATGATTGGTTGCCTTTTACT 58.670 34.615 0.00 0.00 0.00 2.24
1961 2204 8.474025 CCATTTATGATTGGTTGCCTTTTACTA 58.526 33.333 0.00 0.00 0.00 1.82
1965 2208 6.509418 TGATTGGTTGCCTTTTACTATGTC 57.491 37.500 0.00 0.00 0.00 3.06
1966 2209 6.007076 TGATTGGTTGCCTTTTACTATGTCA 58.993 36.000 0.00 0.00 0.00 3.58
1967 2210 6.663093 TGATTGGTTGCCTTTTACTATGTCAT 59.337 34.615 0.00 0.00 0.00 3.06
1969 2212 7.624360 TTGGTTGCCTTTTACTATGTCATAG 57.376 36.000 16.85 16.85 38.81 2.23
1971 2214 5.588648 GGTTGCCTTTTACTATGTCATAGCA 59.411 40.000 18.12 7.94 36.30 3.49
1972 2215 6.458342 GGTTGCCTTTTACTATGTCATAGCAC 60.458 42.308 18.12 6.10 36.30 4.40
1973 2216 5.123227 TGCCTTTTACTATGTCATAGCACC 58.877 41.667 18.12 3.06 36.30 5.01
1974 2217 5.104527 TGCCTTTTACTATGTCATAGCACCT 60.105 40.000 18.12 3.32 36.30 4.00
1976 2219 5.237344 CCTTTTACTATGTCATAGCACCTGC 59.763 44.000 18.12 0.00 42.49 4.85
1977 2220 5.351948 TTTACTATGTCATAGCACCTGCA 57.648 39.130 18.12 0.00 45.16 4.41
1985 2228 4.949238 TGTCATAGCACCTGCATAATTTGT 59.051 37.500 0.00 0.00 45.16 2.83
1994 2237 5.345741 CACCTGCATAATTTGTTGTGCTTAC 59.654 40.000 10.44 0.00 39.39 2.34
1995 2238 5.243730 ACCTGCATAATTTGTTGTGCTTACT 59.756 36.000 10.44 0.00 39.39 2.24
1996 2239 6.432783 ACCTGCATAATTTGTTGTGCTTACTA 59.567 34.615 10.44 0.00 39.39 1.82
1997 2240 6.747280 CCTGCATAATTTGTTGTGCTTACTAC 59.253 38.462 10.44 0.00 39.39 2.73
2028 2271 8.453320 TCTGATCAGCATTTATTGTAAGTTGTG 58.547 33.333 18.36 0.00 0.00 3.33
2032 2275 6.331369 AGCATTTATTGTAAGTTGTGCTGT 57.669 33.333 0.00 0.00 39.90 4.40
2033 2276 6.381801 AGCATTTATTGTAAGTTGTGCTGTC 58.618 36.000 0.00 0.00 39.90 3.51
2034 2277 5.283717 GCATTTATTGTAAGTTGTGCTGTCG 59.716 40.000 0.00 0.00 0.00 4.35
2077 2323 4.778534 ATTTCACAGTCAAGCATCCAAG 57.221 40.909 0.00 0.00 0.00 3.61
2078 2324 2.936919 TCACAGTCAAGCATCCAAGT 57.063 45.000 0.00 0.00 0.00 3.16
2079 2325 2.497138 TCACAGTCAAGCATCCAAGTG 58.503 47.619 0.00 0.00 0.00 3.16
2083 2329 3.701040 ACAGTCAAGCATCCAAGTGTTTT 59.299 39.130 0.00 0.00 0.00 2.43
2084 2330 4.046462 CAGTCAAGCATCCAAGTGTTTTG 58.954 43.478 0.00 0.00 0.00 2.44
2085 2331 3.953612 AGTCAAGCATCCAAGTGTTTTGA 59.046 39.130 0.00 0.00 0.00 2.69
2086 2332 4.044426 GTCAAGCATCCAAGTGTTTTGAC 58.956 43.478 0.00 0.00 37.96 3.18
2087 2333 3.698539 TCAAGCATCCAAGTGTTTTGACA 59.301 39.130 0.00 0.00 0.00 3.58
2088 2334 3.996150 AGCATCCAAGTGTTTTGACAG 57.004 42.857 0.00 0.00 0.00 3.51
2089 2335 3.290710 AGCATCCAAGTGTTTTGACAGT 58.709 40.909 0.00 0.00 0.00 3.55
2248 2494 6.017605 GTCAAGCTTCTTGAATGAAGACTTCA 60.018 38.462 19.85 19.85 44.40 3.02
2589 2835 2.355717 CTCTTCTTGAGTCACCGGTC 57.644 55.000 2.59 0.00 37.99 4.79
2653 2914 5.652452 GGTGCCACCAATAATTACTTTCTCT 59.348 40.000 9.55 0.00 38.42 3.10
2661 2922 7.072076 ACCAATAATTACTTTCTCTATCCGGGT 59.928 37.037 0.00 0.00 0.00 5.28
2683 2982 0.767375 AATAGGCCGCTGGACATGAT 59.233 50.000 0.00 0.00 29.21 2.45
2688 2987 1.369091 GCCGCTGGACATGATCGTTT 61.369 55.000 0.00 0.00 0.00 3.60
2700 2999 1.902508 TGATCGTTTGCTCTTCCCTCT 59.097 47.619 0.00 0.00 0.00 3.69
2702 3001 3.513912 TGATCGTTTGCTCTTCCCTCTAA 59.486 43.478 0.00 0.00 0.00 2.10
2713 3012 1.537800 TCCCTCTAATCCCCTCCGTA 58.462 55.000 0.00 0.00 0.00 4.02
2768 3067 2.212869 TTAGTTAGCGTATGTGCGGG 57.787 50.000 0.00 0.00 40.67 6.13
2788 3087 5.183228 CGGGTAAAAATGGATCAGTGTACT 58.817 41.667 0.00 0.00 0.00 2.73
2793 3092 5.964958 AAAATGGATCAGTGTACTTGTGG 57.035 39.130 0.00 0.00 0.00 4.17
2794 3093 4.640771 AATGGATCAGTGTACTTGTGGT 57.359 40.909 0.00 0.00 0.00 4.16
2796 3095 5.755409 ATGGATCAGTGTACTTGTGGTTA 57.245 39.130 0.00 0.00 0.00 2.85
2834 3133 7.182060 ACCTATTGATTGAGGTTGTGGTAAAT 58.818 34.615 0.00 0.00 43.87 1.40
2836 3135 8.531146 CCTATTGATTGAGGTTGTGGTAAATTT 58.469 33.333 0.00 0.00 0.00 1.82
2967 3266 0.173935 CATTTGATGCGGCACATGGT 59.826 50.000 4.03 0.00 39.84 3.55
2971 3276 0.038435 TGATGCGGCACATGGTTTTG 60.038 50.000 4.03 0.00 39.84 2.44
2994 3299 6.701340 TGTGCAGTATAGAGACTTGTGATTT 58.299 36.000 0.00 0.00 0.00 2.17
3002 3307 5.409643 AGAGACTTGTGATTTCAACGTTG 57.590 39.130 22.35 22.35 0.00 4.10
3004 3309 5.006746 AGAGACTTGTGATTTCAACGTTGTC 59.993 40.000 26.47 17.60 0.00 3.18
3006 3311 5.354234 AGACTTGTGATTTCAACGTTGTCTT 59.646 36.000 26.47 12.86 30.50 3.01
3018 3323 9.483916 TTTCAACGTTGTCTTATTCTATCAAGA 57.516 29.630 26.47 0.00 0.00 3.02
3023 3328 9.141400 ACGTTGTCTTATTCTATCAAGAAGAAC 57.859 33.333 0.00 0.00 44.79 3.01
3034 3339 2.807967 TCAAGAAGAACATTGCTGTCCG 59.192 45.455 0.00 0.00 33.36 4.79
3093 3398 8.558700 GTTGCAAATTTGGTTCTATGTTTTGAT 58.441 29.630 19.47 0.00 0.00 2.57
3167 3473 4.512944 GTGCTTACCACATGATATCCACTG 59.487 45.833 0.00 0.00 44.06 3.66
3170 3476 5.674525 CTTACCACATGATATCCACTGTGT 58.325 41.667 20.08 14.06 34.96 3.72
3171 3477 6.685368 GCTTACCACATGATATCCACTGTGTA 60.685 42.308 20.08 13.43 34.96 2.90
3200 3506 7.774625 TGTGGCTGAAATGATTATGATCTGTTA 59.225 33.333 0.00 0.00 33.28 2.41
3317 3623 1.303643 CTTCCAACCCCACTCTGGC 60.304 63.158 0.00 0.00 35.79 4.85
3368 3674 6.384305 AGGTAATATCCTTGACTGTTAGCACT 59.616 38.462 0.00 0.00 33.52 4.40
3550 3868 0.865769 ACAGTGCCGACGAAACAATC 59.134 50.000 0.00 0.00 0.00 2.67
3565 3883 5.556758 CGAAACAATCGTTAAACCGAAGACA 60.557 40.000 0.00 0.00 46.52 3.41
3873 4191 1.069935 GCCGCTCAGGTATCCCTTC 59.930 63.158 0.00 0.00 39.89 3.46
3876 4194 0.460311 CGCTCAGGTATCCCTTCGTT 59.540 55.000 0.00 0.00 39.89 3.85
3883 4201 3.443681 CAGGTATCCCTTCGTTGCAAATT 59.556 43.478 0.00 0.00 39.89 1.82
3891 4209 5.043248 CCCTTCGTTGCAAATTAATGATCC 58.957 41.667 0.00 0.00 0.00 3.36
3902 4220 6.698766 GCAAATTAATGATCCACAAGTCCATC 59.301 38.462 0.00 0.00 0.00 3.51
3921 4239 5.548056 TCCATCTTCTAGAGAAACCTGGTTT 59.452 40.000 24.06 24.06 38.06 3.27
3932 4250 2.202395 CCTGGTTTGCACACAGGGG 61.202 63.158 18.32 7.82 46.24 4.79
4211 4536 6.293790 CCACTTTACACAGCCATGATGATATG 60.294 42.308 0.00 0.00 0.00 1.78
4381 4706 1.556911 AGCGAGGTTGACATCCTTGAT 59.443 47.619 20.09 13.07 38.41 2.57
4484 4812 5.848036 CGTTTCAGTCACAAGTTGATCATTC 59.152 40.000 10.54 0.00 36.32 2.67
4496 4825 8.134895 ACAAGTTGATCATTCGTGTAATGTTTT 58.865 29.630 10.54 0.00 44.58 2.43
4610 4943 2.492090 GTGGAGAGAGCGTCGCAT 59.508 61.111 21.09 7.40 0.00 4.73
4779 5124 2.933878 TTCTCAGTTTGGTGGCGCGT 62.934 55.000 8.43 0.00 0.00 6.01
4802 5147 1.003718 CTTCGGTTCCTTCGGCCTT 60.004 57.895 0.00 0.00 0.00 4.35
4929 5277 3.161450 GCTACCCGGGGCTCATGA 61.161 66.667 27.92 0.00 0.00 3.07
4930 5278 2.520536 GCTACCCGGGGCTCATGAT 61.521 63.158 27.92 2.73 0.00 2.45
4931 5279 1.372683 CTACCCGGGGCTCATGATG 59.627 63.158 27.92 0.00 0.00 3.07
4932 5280 2.738213 CTACCCGGGGCTCATGATGC 62.738 65.000 27.92 2.02 0.00 3.91
4933 5281 4.193893 CCCGGGGCTCATGATGCA 62.194 66.667 14.71 0.00 0.00 3.96
4934 5282 2.593725 CCGGGGCTCATGATGCAG 60.594 66.667 15.83 8.54 0.00 4.41
4935 5283 2.593725 CGGGGCTCATGATGCAGG 60.594 66.667 15.83 0.00 0.00 4.85
4936 5284 2.921435 GGGGCTCATGATGCAGGA 59.079 61.111 15.83 0.00 0.00 3.86
4937 5285 1.228228 GGGGCTCATGATGCAGGAA 59.772 57.895 15.83 0.00 0.00 3.36
4938 5286 0.822532 GGGGCTCATGATGCAGGAAG 60.823 60.000 15.83 0.00 0.00 3.46
4939 5287 0.822532 GGGCTCATGATGCAGGAAGG 60.823 60.000 15.83 0.00 0.00 3.46
4940 5288 0.182061 GGCTCATGATGCAGGAAGGA 59.818 55.000 15.83 0.00 0.00 3.36
4941 5289 1.307097 GCTCATGATGCAGGAAGGAC 58.693 55.000 10.95 0.00 0.00 3.85
4942 5290 1.407851 GCTCATGATGCAGGAAGGACA 60.408 52.381 10.95 0.00 0.00 4.02
4943 5291 2.562635 CTCATGATGCAGGAAGGACAG 58.437 52.381 0.00 0.00 0.00 3.51
4944 5292 2.169978 CTCATGATGCAGGAAGGACAGA 59.830 50.000 0.00 0.00 0.00 3.41
4945 5293 2.775960 TCATGATGCAGGAAGGACAGAT 59.224 45.455 0.00 0.00 0.00 2.90
4946 5294 2.704464 TGATGCAGGAAGGACAGATG 57.296 50.000 0.00 0.00 0.00 2.90
4958 5306 1.487976 GGACAGATGATGCAGGAAGGA 59.512 52.381 0.00 0.00 0.00 3.36
5070 5418 8.859090 CCCAGATGTAAATAATAGGATGCAAAA 58.141 33.333 0.00 0.00 0.00 2.44
5269 5639 5.490159 ACAATTGGGCATTGGTTAAATCAG 58.510 37.500 10.83 0.00 46.06 2.90
5271 5641 6.212388 ACAATTGGGCATTGGTTAAATCAGTA 59.788 34.615 10.83 0.00 46.06 2.74
5351 5724 2.104281 ACCTGGTGCTTTTTCGTACTCT 59.896 45.455 0.00 0.00 0.00 3.24
5354 5727 4.058817 CTGGTGCTTTTTCGTACTCTCTT 58.941 43.478 0.00 0.00 0.00 2.85
5355 5728 4.448210 TGGTGCTTTTTCGTACTCTCTTT 58.552 39.130 0.00 0.00 0.00 2.52
5356 5729 5.603596 TGGTGCTTTTTCGTACTCTCTTTA 58.396 37.500 0.00 0.00 0.00 1.85
5359 5732 7.095355 TGGTGCTTTTTCGTACTCTCTTTATTC 60.095 37.037 0.00 0.00 0.00 1.75
5390 5763 6.584185 AGTGTTGTGGTTTTAGTTCAAACT 57.416 33.333 0.46 0.46 42.91 2.66
5394 5767 7.170151 GTGTTGTGGTTTTAGTTCAAACTGTTT 59.830 33.333 5.66 0.00 40.07 2.83
5429 5809 9.778741 AACTAAAATCATGACACTTAACAGAGA 57.221 29.630 0.00 0.00 0.00 3.10
5433 5813 5.651387 TCATGACACTTAACAGAGAGAGG 57.349 43.478 0.00 0.00 0.00 3.69
5465 5845 5.659463 TCTGAAAGAAACATTGGTTTGTGG 58.341 37.500 0.00 0.00 46.84 4.17
5466 5846 4.764172 TGAAAGAAACATTGGTTTGTGGG 58.236 39.130 0.00 0.00 46.84 4.61
5467 5847 4.223923 TGAAAGAAACATTGGTTTGTGGGT 59.776 37.500 0.00 0.00 46.84 4.51
5468 5848 4.835284 AAGAAACATTGGTTTGTGGGTT 57.165 36.364 0.00 0.00 46.84 4.11
5469 5849 5.941555 AAGAAACATTGGTTTGTGGGTTA 57.058 34.783 0.00 0.00 46.84 2.85
5470 5850 6.493189 AAGAAACATTGGTTTGTGGGTTAT 57.507 33.333 0.00 0.00 46.84 1.89
5502 5883 3.974293 TTCGGGCCCCCAAGAACC 61.974 66.667 18.66 0.00 35.37 3.62
5563 5946 4.475135 GGGGCAGCTCGGTTCCTC 62.475 72.222 0.00 0.00 0.00 3.71
5592 5991 1.302832 CAAAGTTCGCCCTCCAGCT 60.303 57.895 0.00 0.00 0.00 4.24
5611 6031 2.478539 GCTGCTGATTTCGACCCAAATC 60.479 50.000 0.00 1.38 41.41 2.17
5620 6040 4.652131 ACCCAAATCCGGCGTGCA 62.652 61.111 6.01 0.00 0.00 4.57
5642 6063 3.497118 TCGGCGCAAATTCAACATAAAG 58.503 40.909 10.83 0.00 0.00 1.85
5780 6201 1.583556 TGCCCTTGAGCCTTCATAGA 58.416 50.000 0.00 0.00 32.27 1.98
5818 6239 2.703416 CTGCAGTTCTTGATGCACCTA 58.297 47.619 5.25 0.00 46.97 3.08
5905 6326 3.650950 GGCAAGAGGACCCTGCCA 61.651 66.667 20.04 0.00 44.42 4.92
5925 6346 4.119862 CCAGTAATATGGTTCAGTGTCGG 58.880 47.826 0.00 0.00 35.47 4.79
5932 6353 1.414550 TGGTTCAGTGTCGGACATTGA 59.585 47.619 26.35 26.35 42.02 2.57
5961 6382 2.101917 TGCTCGCTCTCAATGATCATGA 59.898 45.455 9.46 8.15 0.00 3.07
6014 6435 3.505680 CCCACATTTGATCTTTCGACCAA 59.494 43.478 0.00 0.00 0.00 3.67
6016 6437 4.161333 CACATTTGATCTTTCGACCAAGC 58.839 43.478 0.00 0.00 0.00 4.01
6054 6476 2.489329 ACAACAGCAAATCGAGATTGGG 59.511 45.455 13.66 0.00 0.00 4.12
6058 6480 0.817013 GCAAATCGAGATTGGGGCAA 59.183 50.000 13.66 0.00 0.00 4.52
6074 6496 0.033781 GCAAACCAAATGCCTGCTCA 59.966 50.000 0.00 0.00 37.85 4.26
6122 6544 4.214332 CACTTGGCAAAGTAGGAGTTCTTC 59.786 45.833 6.06 0.00 45.07 2.87
6124 6546 7.161179 ACTTGGCAAAGTAGGAGTTCTTCCA 62.161 44.000 4.12 0.00 45.01 3.53
6170 6592 4.520492 GTCTTCACAAATGTGGACCATCTT 59.480 41.667 13.22 0.00 45.65 2.40
6281 6705 4.020839 AGCTTGGCAAAGACATTTAAGCAT 60.021 37.500 4.56 0.00 38.85 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.067896 GGTGCATACAGACCATGGATAAG 58.932 47.826 21.47 7.71 28.24 1.73
14 15 0.320334 CACACGGTGCATACAGACCA 60.320 55.000 8.30 0.00 31.97 4.02
59 61 6.039159 GCAATGATTTTTCCTTTTTGTCCCAA 59.961 34.615 0.00 0.00 0.00 4.12
107 111 4.299586 TGGTATGTGAAGAAGATGCCAA 57.700 40.909 0.00 0.00 40.68 4.52
108 112 3.998913 TGGTATGTGAAGAAGATGCCA 57.001 42.857 0.00 0.00 41.25 4.92
109 113 4.454678 TCATGGTATGTGAAGAAGATGCC 58.545 43.478 0.00 0.00 35.17 4.40
110 114 4.514441 CCTCATGGTATGTGAAGAAGATGC 59.486 45.833 0.00 0.00 0.00 3.91
111 115 5.922053 TCCTCATGGTATGTGAAGAAGATG 58.078 41.667 0.00 0.00 34.23 2.90
112 116 6.566079 TTCCTCATGGTATGTGAAGAAGAT 57.434 37.500 0.00 0.00 34.23 2.40
113 117 6.156775 TGATTCCTCATGGTATGTGAAGAAGA 59.843 38.462 0.00 0.00 31.64 2.87
114 118 6.351711 TGATTCCTCATGGTATGTGAAGAAG 58.648 40.000 0.00 0.00 31.64 2.85
115 119 6.312141 TGATTCCTCATGGTATGTGAAGAA 57.688 37.500 0.00 0.00 32.40 2.52
148 152 0.955919 CAGACTGAAAAGGACCGGCC 60.956 60.000 0.00 3.58 0.00 6.13
149 153 1.578206 GCAGACTGAAAAGGACCGGC 61.578 60.000 6.65 0.00 0.00 6.13
277 281 8.908786 AACAACGTCAATATCATTAGATCCAT 57.091 30.769 0.00 0.00 35.67 3.41
355 359 8.579850 TCTGCATATTAGGTTTGTCTGAAATT 57.420 30.769 0.00 0.00 0.00 1.82
357 361 7.168219 ACTCTGCATATTAGGTTTGTCTGAAA 58.832 34.615 0.00 0.00 0.00 2.69
358 362 6.711277 ACTCTGCATATTAGGTTTGTCTGAA 58.289 36.000 0.00 0.00 0.00 3.02
388 392 3.049344 GGGATATTTCCTCCTGTGGTCT 58.951 50.000 1.99 0.00 42.20 3.85
393 397 2.047830 GGTCGGGATATTTCCTCCTGT 58.952 52.381 1.99 0.00 42.20 4.00
394 398 1.348036 GGGTCGGGATATTTCCTCCTG 59.652 57.143 1.99 0.00 42.20 3.86
399 403 0.320697 CGGAGGGTCGGGATATTTCC 59.679 60.000 0.00 0.00 41.77 3.13
402 436 2.571216 CGCGGAGGGTCGGGATATT 61.571 63.158 0.00 0.00 44.22 1.28
422 456 0.094730 GCAAAAGAGACGCGCGTAAT 59.905 50.000 37.91 27.57 0.00 1.89
423 457 1.216298 TGCAAAAGAGACGCGCGTAA 61.216 50.000 37.91 9.89 0.00 3.18
424 458 1.216298 TTGCAAAAGAGACGCGCGTA 61.216 50.000 37.91 14.58 0.00 4.42
425 459 2.530497 TTGCAAAAGAGACGCGCGT 61.530 52.632 38.52 38.52 0.00 6.01
428 521 1.082104 GGGTTGCAAAAGAGACGCG 60.082 57.895 3.53 3.53 0.00 6.01
451 544 1.891722 GCATGCAGGAAAACAGGGGG 61.892 60.000 14.21 0.00 0.00 5.40
464 557 0.541063 GATGGATGGATGGGCATGCA 60.541 55.000 21.36 0.00 43.22 3.96
492 585 2.177594 CTGGCCAGGTGTGAGGAGTC 62.178 65.000 26.14 0.00 0.00 3.36
579 678 1.203994 CTTGGCCATGGAAGAAAGCAG 59.796 52.381 18.40 0.00 0.00 4.24
602 701 1.219393 GCTCCCTACTTTCGCTGCT 59.781 57.895 0.00 0.00 0.00 4.24
650 749 4.051922 GCGGAGTTACTGGTGATAATCTG 58.948 47.826 0.00 0.00 0.00 2.90
653 752 3.431766 GGTGCGGAGTTACTGGTGATAAT 60.432 47.826 0.00 0.00 0.00 1.28
654 753 2.093869 GGTGCGGAGTTACTGGTGATAA 60.094 50.000 0.00 0.00 0.00 1.75
656 755 0.249398 GGTGCGGAGTTACTGGTGAT 59.751 55.000 0.00 0.00 0.00 3.06
657 756 1.116536 TGGTGCGGAGTTACTGGTGA 61.117 55.000 0.00 0.00 0.00 4.02
658 757 0.250124 TTGGTGCGGAGTTACTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
683 783 2.094545 GCTTTTTGTATGGTGGAGGCTG 60.095 50.000 0.00 0.00 0.00 4.85
697 797 2.794350 GTCGTTGGTGAATGGCTTTTTG 59.206 45.455 0.00 0.00 0.00 2.44
702 802 0.038166 ATGGTCGTTGGTGAATGGCT 59.962 50.000 0.00 0.00 0.00 4.75
734 834 1.287815 CAACTGTGTGCTGGCATGG 59.712 57.895 0.00 0.00 0.00 3.66
736 836 4.585070 ACAACTGTGTGCTGGCAT 57.415 50.000 0.00 0.00 36.31 4.40
752 852 9.562583 TGAAAGTTTGTATTTTTGTGTACTCAC 57.437 29.630 0.00 0.00 44.08 3.51
753 853 9.781834 CTGAAAGTTTGTATTTTTGTGTACTCA 57.218 29.630 0.00 0.00 0.00 3.41
756 856 9.783256 ACTCTGAAAGTTTGTATTTTTGTGTAC 57.217 29.630 0.00 0.00 33.03 2.90
806 906 7.687757 CCGATTTTTGTTTGTTTGTTTTCTCTG 59.312 33.333 0.00 0.00 0.00 3.35
823 923 1.394917 CTGTCCTCGCTCCGATTTTTG 59.605 52.381 0.00 0.00 34.61 2.44
882 983 3.663176 CCGTTGCTGCCACTGGTG 61.663 66.667 2.24 0.00 0.00 4.17
884 985 1.926511 GATTCCGTTGCTGCCACTGG 61.927 60.000 2.24 5.54 0.00 4.00
1064 1193 0.478507 GAGAGAGGGGGAGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
1121 1250 3.647771 GAACAACTCCCCCGGCCT 61.648 66.667 0.00 0.00 0.00 5.19
1130 1259 3.134458 CTCCACTGGACAAGAACAACTC 58.866 50.000 0.00 0.00 0.00 3.01
1142 1271 1.606601 CTGGACCGACTCCACTGGA 60.607 63.158 0.00 0.00 44.99 3.86
1228 1362 0.846870 AACCAAGAAGGGAGGGAGGG 60.847 60.000 0.00 0.00 43.89 4.30
1229 1363 0.329596 CAACCAAGAAGGGAGGGAGG 59.670 60.000 0.00 0.00 43.89 4.30
1230 1364 0.329596 CCAACCAAGAAGGGAGGGAG 59.670 60.000 0.00 0.00 43.89 4.30
1231 1365 0.402861 ACCAACCAAGAAGGGAGGGA 60.403 55.000 0.00 0.00 43.89 4.20
1232 1366 0.251341 CACCAACCAAGAAGGGAGGG 60.251 60.000 0.00 0.00 43.89 4.30
1233 1367 0.251341 CCACCAACCAAGAAGGGAGG 60.251 60.000 0.00 0.00 43.89 4.30
1234 1368 0.251341 CCCACCAACCAAGAAGGGAG 60.251 60.000 0.00 0.00 43.89 4.30
1235 1369 0.699577 TCCCACCAACCAAGAAGGGA 60.700 55.000 0.00 0.00 43.89 4.20
1257 1426 3.061697 CCGGACGACCTAAAATTTCTTCG 59.938 47.826 0.00 0.46 0.00 3.79
1261 1430 4.667415 CGAAACCGGACGACCTAAAATTTC 60.667 45.833 9.46 1.75 0.00 2.17
1262 1431 3.187022 CGAAACCGGACGACCTAAAATTT 59.813 43.478 9.46 0.00 0.00 1.82
1274 1461 0.168128 CAATTCAGGCGAAACCGGAC 59.832 55.000 9.46 0.00 42.92 4.79
1276 1463 0.596082 AACAATTCAGGCGAAACCGG 59.404 50.000 0.00 0.00 46.52 5.28
1287 1474 3.813166 GGTGACGGAGAAGAAACAATTCA 59.187 43.478 0.00 0.00 38.06 2.57
1348 1535 4.162690 AAGGCGGATGGACGGAGC 62.163 66.667 0.00 0.00 0.00 4.70
1372 1584 2.930777 ATCCGTCTTCTCCTCCCCCG 62.931 65.000 0.00 0.00 0.00 5.73
1387 1599 1.976728 CGATACCGAACGATTGATCCG 59.023 52.381 0.00 0.00 38.22 4.18
1399 1611 1.609061 GGACGATACCTCCGATACCGA 60.609 57.143 0.00 0.00 38.22 4.69
1414 1626 0.037326 GCACCTCATGAAGTGGACGA 60.037 55.000 22.76 0.00 34.48 4.20
1417 1629 1.191489 TCGGCACCTCATGAAGTGGA 61.191 55.000 22.76 11.72 34.48 4.02
1424 1636 3.831883 CCCAATCGGCACCTCATG 58.168 61.111 0.00 0.00 0.00 3.07
1476 1688 6.257193 CACGAGTATATAGACAAACAAACCCC 59.743 42.308 0.00 0.00 0.00 4.95
1492 1704 2.278336 GCCGCACGCACGAGTATA 60.278 61.111 0.00 0.00 37.47 1.47
1493 1705 4.129737 AGCCGCACGCACGAGTAT 62.130 61.111 0.00 0.00 41.38 2.12
1498 1710 4.505217 GAATCAGCCGCACGCACG 62.505 66.667 0.00 0.00 41.38 5.34
1499 1711 4.505217 CGAATCAGCCGCACGCAC 62.505 66.667 0.00 0.00 41.38 5.34
1529 1749 4.771114 TCATCAATAACTCCCGGACAAT 57.229 40.909 0.73 0.00 0.00 2.71
1533 1753 4.262292 CGGTAATCATCAATAACTCCCGGA 60.262 45.833 0.73 0.00 0.00 5.14
1575 1796 9.949174 GTAAAATTTTGAAACCAAGATGCAAAT 57.051 25.926 13.76 0.00 0.00 2.32
1624 1845 7.450323 TGAAATAAGAACCCCCTTTGTTTAGAG 59.550 37.037 0.00 0.00 0.00 2.43
1625 1846 7.299134 TGAAATAAGAACCCCCTTTGTTTAGA 58.701 34.615 0.00 0.00 0.00 2.10
1627 1848 7.070629 ACTGAAATAAGAACCCCCTTTGTTTA 58.929 34.615 0.00 0.00 0.00 2.01
1633 1854 9.421399 CATAATAACTGAAATAAGAACCCCCTT 57.579 33.333 0.00 0.00 0.00 3.95
1634 1855 8.004801 CCATAATAACTGAAATAAGAACCCCCT 58.995 37.037 0.00 0.00 0.00 4.79
1635 1856 8.002459 TCCATAATAACTGAAATAAGAACCCCC 58.998 37.037 0.00 0.00 0.00 5.40
1636 1857 8.990163 TCCATAATAACTGAAATAAGAACCCC 57.010 34.615 0.00 0.00 0.00 4.95
1692 1928 1.528824 CCACGAGCTGAATCCCCAT 59.471 57.895 0.00 0.00 0.00 4.00
1697 1933 2.467826 GCTGGCCACGAGCTGAATC 61.468 63.158 0.00 0.00 43.05 2.52
1712 1948 1.457346 GAGAATCCAACCCACTGCTG 58.543 55.000 0.00 0.00 0.00 4.41
1740 1976 6.801575 AGAAAACAGAGGAGAGATATTCGAC 58.198 40.000 0.00 0.00 0.00 4.20
1751 1987 4.276678 TCATTGCACAAGAAAACAGAGGAG 59.723 41.667 0.00 0.00 0.00 3.69
1783 2019 9.130661 TGCTGTAATTTTTACAGGCATACATAT 57.869 29.630 22.26 0.00 43.68 1.78
1784 2020 8.512966 TGCTGTAATTTTTACAGGCATACATA 57.487 30.769 22.26 3.14 43.68 2.29
1788 2024 7.978975 GGAAATGCTGTAATTTTTACAGGCATA 59.021 33.333 22.26 6.82 43.68 3.14
1825 2061 6.801575 TGAAACCTTGATTAAACCACTGAAC 58.198 36.000 0.00 0.00 0.00 3.18
1826 2062 6.605594 ACTGAAACCTTGATTAAACCACTGAA 59.394 34.615 0.00 0.00 0.00 3.02
1827 2063 6.126409 ACTGAAACCTTGATTAAACCACTGA 58.874 36.000 0.00 0.00 0.00 3.41
1828 2064 6.391227 ACTGAAACCTTGATTAAACCACTG 57.609 37.500 0.00 0.00 0.00 3.66
1868 2104 1.483827 TGGCAGCAGGTAGAGATGAAG 59.516 52.381 0.00 0.00 0.00 3.02
1883 2119 0.182061 ACTGGGCTACATCATGGCAG 59.818 55.000 0.00 0.00 36.24 4.85
1900 2136 3.315191 CCGACACAATTCTGTTTTCCACT 59.685 43.478 0.00 0.00 31.64 4.00
1903 2139 3.564225 AGACCGACACAATTCTGTTTTCC 59.436 43.478 0.00 0.00 31.64 3.13
1904 2140 4.035208 ACAGACCGACACAATTCTGTTTTC 59.965 41.667 0.00 0.00 45.06 2.29
1909 2145 2.483876 ACACAGACCGACACAATTCTG 58.516 47.619 0.00 0.00 41.14 3.02
1920 2156 0.036388 AATGGGCAGTACACAGACCG 60.036 55.000 0.00 0.00 32.39 4.79
1935 2178 7.330262 AGTAAAAGGCAACCAATCATAAATGG 58.670 34.615 0.00 0.00 42.60 3.16
1939 2182 8.588290 ACATAGTAAAAGGCAACCAATCATAA 57.412 30.769 0.00 0.00 37.17 1.90
1954 2197 5.739959 TGCAGGTGCTATGACATAGTAAAA 58.260 37.500 20.91 5.14 42.66 1.52
1959 2202 7.040892 ACAAATTATGCAGGTGCTATGACATAG 60.041 37.037 16.80 16.80 42.66 2.23
1960 2203 6.772233 ACAAATTATGCAGGTGCTATGACATA 59.228 34.615 3.18 0.00 42.66 2.29
1961 2204 5.595542 ACAAATTATGCAGGTGCTATGACAT 59.404 36.000 3.18 0.00 42.66 3.06
1962 2205 4.949238 ACAAATTATGCAGGTGCTATGACA 59.051 37.500 3.18 0.00 42.66 3.58
1963 2206 5.505173 ACAAATTATGCAGGTGCTATGAC 57.495 39.130 3.18 0.00 42.66 3.06
1965 2208 5.517411 CACAACAAATTATGCAGGTGCTATG 59.483 40.000 3.18 0.00 42.66 2.23
1966 2209 5.653507 CACAACAAATTATGCAGGTGCTAT 58.346 37.500 3.18 0.00 42.66 2.97
1967 2210 4.617995 GCACAACAAATTATGCAGGTGCTA 60.618 41.667 3.18 0.00 44.04 3.49
1969 2212 2.412770 GCACAACAAATTATGCAGGTGC 59.587 45.455 0.00 0.00 42.43 5.01
1971 2214 4.605640 AAGCACAACAAATTATGCAGGT 57.394 36.364 0.00 0.00 40.63 4.00
1972 2215 5.713025 AGTAAGCACAACAAATTATGCAGG 58.287 37.500 0.00 0.00 40.63 4.85
1973 2216 7.482743 CAGTAGTAAGCACAACAAATTATGCAG 59.517 37.037 0.00 0.00 40.63 4.41
1974 2217 7.174080 TCAGTAGTAAGCACAACAAATTATGCA 59.826 33.333 0.00 0.00 40.63 3.96
1985 2228 6.935167 TGATCAGAATCAGTAGTAAGCACAA 58.065 36.000 0.00 0.00 36.98 3.33
2028 2271 1.230324 AGCTTCCTTTTCACGACAGC 58.770 50.000 0.00 0.00 0.00 4.40
2031 2274 2.789339 GCAAAAGCTTCCTTTTCACGAC 59.211 45.455 0.00 0.00 45.64 4.34
2032 2275 2.687935 AGCAAAAGCTTCCTTTTCACGA 59.312 40.909 0.00 0.00 45.64 4.35
2033 2276 3.084070 AGCAAAAGCTTCCTTTTCACG 57.916 42.857 0.00 0.00 45.64 4.35
2034 2277 7.482654 AATTAAGCAAAAGCTTCCTTTTCAC 57.517 32.000 5.93 0.00 45.64 3.18
2077 2323 7.440255 ACCACATTAGTACTACTGTCAAAACAC 59.560 37.037 19.78 0.00 28.23 3.32
2078 2324 7.439955 CACCACATTAGTACTACTGTCAAAACA 59.560 37.037 19.78 0.00 28.23 2.83
2079 2325 7.440255 ACACCACATTAGTACTACTGTCAAAAC 59.560 37.037 19.78 0.00 28.23 2.43
2083 2329 6.151648 GGTACACCACATTAGTACTACTGTCA 59.848 42.308 19.78 0.00 38.47 3.58
2084 2330 6.376581 AGGTACACCACATTAGTACTACTGTC 59.623 42.308 19.78 9.87 38.47 3.51
2085 2331 6.251471 AGGTACACCACATTAGTACTACTGT 58.749 40.000 17.58 17.58 38.47 3.55
2086 2332 6.770746 AGGTACACCACATTAGTACTACTG 57.229 41.667 16.40 16.40 38.47 2.74
2087 2333 6.723052 ACAAGGTACACCACATTAGTACTACT 59.277 38.462 0.91 0.00 38.47 2.57
2088 2334 6.928520 ACAAGGTACACCACATTAGTACTAC 58.071 40.000 0.91 0.00 38.47 2.73
2089 2335 7.015487 ACAACAAGGTACACCACATTAGTACTA 59.985 37.037 0.00 0.00 38.47 1.82
2248 2494 4.313020 AATTGGAGAATTGACCAGAGCT 57.687 40.909 0.00 0.00 37.48 4.09
2589 2835 6.148480 GGCATACCATAGCATTGTAGAGAAAG 59.852 42.308 0.00 0.00 35.26 2.62
2649 2910 3.836562 GGCCTATTAAACCCGGATAGAGA 59.163 47.826 0.73 0.00 0.00 3.10
2653 2914 1.002315 GCGGCCTATTAAACCCGGATA 59.998 52.381 0.73 0.00 40.98 2.59
2661 2922 2.171659 TCATGTCCAGCGGCCTATTAAA 59.828 45.455 0.00 0.00 0.00 1.52
2683 2982 3.118738 GGATTAGAGGGAAGAGCAAACGA 60.119 47.826 0.00 0.00 0.00 3.85
2688 2987 1.295292 AGGGGATTAGAGGGAAGAGCA 59.705 52.381 0.00 0.00 0.00 4.26
2768 3067 7.040686 ACCACAAGTACACTGATCCATTTTTAC 60.041 37.037 0.00 0.00 0.00 2.01
2803 3102 7.106239 CACAACCTCAATCAATAGGTACTTCT 58.894 38.462 0.00 0.00 45.51 2.85
2849 3148 8.232913 ACTTTCATGTGTTTACTGGTAATTGT 57.767 30.769 0.00 0.00 0.00 2.71
2928 3227 3.823716 GCTTTCTGCAAAAACAAGACG 57.176 42.857 0.00 0.00 42.31 4.18
2961 3260 5.643777 GTCTCTATACTGCACAAAACCATGT 59.356 40.000 0.00 0.00 0.00 3.21
2962 3261 5.877012 AGTCTCTATACTGCACAAAACCATG 59.123 40.000 0.00 0.00 0.00 3.66
2963 3262 6.054860 AGTCTCTATACTGCACAAAACCAT 57.945 37.500 0.00 0.00 0.00 3.55
2965 3264 5.701290 ACAAGTCTCTATACTGCACAAAACC 59.299 40.000 0.00 0.00 0.00 3.27
2967 3266 6.521162 TCACAAGTCTCTATACTGCACAAAA 58.479 36.000 0.00 0.00 0.00 2.44
2971 3276 6.813649 TGAAATCACAAGTCTCTATACTGCAC 59.186 38.462 0.00 0.00 0.00 4.57
2973 3278 7.463383 CGTTGAAATCACAAGTCTCTATACTGC 60.463 40.741 0.00 0.00 0.00 4.40
2994 3299 9.140286 CTTCTTGATAGAATAAGACAACGTTGA 57.860 33.333 33.66 12.63 39.58 3.18
3002 3307 9.928236 GCAATGTTCTTCTTGATAGAATAAGAC 57.072 33.333 0.00 0.00 39.58 3.01
3004 3309 9.932699 CAGCAATGTTCTTCTTGATAGAATAAG 57.067 33.333 0.00 0.00 39.58 1.73
3006 3311 9.102757 GACAGCAATGTTCTTCTTGATAGAATA 57.897 33.333 0.00 0.00 39.58 1.75
3016 3321 2.839486 TCGGACAGCAATGTTCTTCT 57.161 45.000 0.00 0.00 0.00 2.85
3017 3322 3.896648 TTTCGGACAGCAATGTTCTTC 57.103 42.857 0.00 0.00 0.00 2.87
3018 3323 4.647424 TTTTTCGGACAGCAATGTTCTT 57.353 36.364 0.00 0.00 0.00 2.52
3065 3370 8.397148 CAAAACATAGAACCAAATTTGCAACTT 58.603 29.630 12.92 0.00 0.00 2.66
3093 3398 7.389803 TGAATTAAGATCATCGGCTTTGAAA 57.610 32.000 0.00 0.00 0.00 2.69
3167 3473 8.190122 TCATAATCATTTCAGCCACATTTACAC 58.810 33.333 0.00 0.00 0.00 2.90
3170 3476 9.358406 AGATCATAATCATTTCAGCCACATTTA 57.642 29.630 0.00 0.00 34.07 1.40
3171 3477 8.141909 CAGATCATAATCATTTCAGCCACATTT 58.858 33.333 0.00 0.00 34.07 2.32
3296 3602 0.771127 CAGAGTGGGGTTGGAAGGAA 59.229 55.000 0.00 0.00 0.00 3.36
3317 3623 4.582656 TCCACATTTGAGTAACTTGTTGGG 59.417 41.667 0.00 0.00 0.00 4.12
3368 3674 6.318648 AGTGAACAGTAGAATGCAAACAAAGA 59.681 34.615 0.00 0.00 0.00 2.52
3450 3768 1.206849 ACTGGTTTTGGTGGCAAACAG 59.793 47.619 0.00 0.00 36.07 3.16
3550 3868 4.235360 AGTCAGATGTCTTCGGTTTAACG 58.765 43.478 0.00 0.00 0.00 3.18
3553 3871 4.523173 ACAGAGTCAGATGTCTTCGGTTTA 59.477 41.667 0.00 0.00 0.00 2.01
3565 3883 6.596309 TTATCACTGAACACAGAGTCAGAT 57.404 37.500 7.63 0.00 35.80 2.90
3873 4191 5.863397 ACTTGTGGATCATTAATTTGCAACG 59.137 36.000 0.00 0.00 0.00 4.10
3876 4194 5.479724 TGGACTTGTGGATCATTAATTTGCA 59.520 36.000 0.00 0.00 0.00 4.08
3883 4201 6.566079 AGAAGATGGACTTGTGGATCATTA 57.434 37.500 0.00 0.00 39.13 1.90
3891 4209 5.872070 GGTTTCTCTAGAAGATGGACTTGTG 59.128 44.000 0.00 0.00 39.13 3.33
3902 4220 4.214332 GTGCAAACCAGGTTTCTCTAGAAG 59.786 45.833 15.24 2.64 33.10 2.85
3921 4239 1.453015 GTGTTGACCCCTGTGTGCA 60.453 57.895 0.00 0.00 0.00 4.57
3932 4250 2.287788 CCCACAAAGATGCAGTGTTGAC 60.288 50.000 11.69 0.00 0.00 3.18
4184 4502 3.057969 TCATGGCTGTGTAAAGTGGAG 57.942 47.619 0.00 0.00 0.00 3.86
4185 4503 3.008923 TCATCATGGCTGTGTAAAGTGGA 59.991 43.478 0.00 0.00 0.00 4.02
4192 4517 5.813513 AGACATATCATCATGGCTGTGTA 57.186 39.130 0.00 0.00 42.89 2.90
4211 4536 4.712476 ACCAGGCTCATCAATGAATAGAC 58.288 43.478 0.00 0.00 36.18 2.59
4381 4706 1.887242 GCGCCAGCGATAACCATCA 60.887 57.895 17.53 0.00 42.83 3.07
4496 4825 6.795144 TTCAGGGTGAATAAATACCGTCTA 57.205 37.500 0.00 0.00 37.85 2.59
4507 4840 8.274322 AGATGATGTTACATTTCAGGGTGAATA 58.726 33.333 0.00 0.00 36.11 1.75
4761 5106 2.664851 CGCGCCACCAAACTGAGA 60.665 61.111 0.00 0.00 0.00 3.27
4808 5153 1.834378 CGCTCCCAGATGGCCTCTA 60.834 63.158 3.32 0.00 31.13 2.43
4892 5237 0.949397 CCTGCATCATTGACGGATGG 59.051 55.000 0.00 0.00 41.87 3.51
4929 5277 2.748798 GCATCATCTGTCCTTCCTGCAT 60.749 50.000 0.00 0.00 0.00 3.96
4930 5278 1.407851 GCATCATCTGTCCTTCCTGCA 60.408 52.381 0.00 0.00 0.00 4.41
4931 5279 1.307097 GCATCATCTGTCCTTCCTGC 58.693 55.000 0.00 0.00 0.00 4.85
4932 5280 2.562635 CTGCATCATCTGTCCTTCCTG 58.437 52.381 0.00 0.00 0.00 3.86
4933 5281 1.489649 CCTGCATCATCTGTCCTTCCT 59.510 52.381 0.00 0.00 0.00 3.36
4934 5282 1.487976 TCCTGCATCATCTGTCCTTCC 59.512 52.381 0.00 0.00 0.00 3.46
4935 5283 2.996249 TCCTGCATCATCTGTCCTTC 57.004 50.000 0.00 0.00 0.00 3.46
4936 5284 2.092538 CCTTCCTGCATCATCTGTCCTT 60.093 50.000 0.00 0.00 0.00 3.36
4937 5285 1.489649 CCTTCCTGCATCATCTGTCCT 59.510 52.381 0.00 0.00 0.00 3.85
4938 5286 1.487976 TCCTTCCTGCATCATCTGTCC 59.512 52.381 0.00 0.00 0.00 4.02
4939 5287 2.093288 TGTCCTTCCTGCATCATCTGTC 60.093 50.000 0.00 0.00 0.00 3.51
4940 5288 1.911357 TGTCCTTCCTGCATCATCTGT 59.089 47.619 0.00 0.00 0.00 3.41
4941 5289 2.169978 TCTGTCCTTCCTGCATCATCTG 59.830 50.000 0.00 0.00 0.00 2.90
4942 5290 2.475155 TCTGTCCTTCCTGCATCATCT 58.525 47.619 0.00 0.00 0.00 2.90
4943 5291 2.996249 TCTGTCCTTCCTGCATCATC 57.004 50.000 0.00 0.00 0.00 2.92
4944 5292 2.775960 TCATCTGTCCTTCCTGCATCAT 59.224 45.455 0.00 0.00 0.00 2.45
4945 5293 2.190538 TCATCTGTCCTTCCTGCATCA 58.809 47.619 0.00 0.00 0.00 3.07
4946 5294 2.996249 TCATCTGTCCTTCCTGCATC 57.004 50.000 0.00 0.00 0.00 3.91
4958 5306 2.586792 GGCTCCGCCTTCATCTGT 59.413 61.111 0.00 0.00 46.69 3.41
4991 5339 3.918220 GCCGATGACGCTGCGAAG 61.918 66.667 30.47 13.53 38.29 3.79
5070 5418 4.878397 CGGAGCACATCTATCTTTCCTTTT 59.122 41.667 0.00 0.00 0.00 2.27
5283 5653 2.420687 GCTGCTGCTAACCCTCATAACT 60.421 50.000 8.53 0.00 36.03 2.24
5285 5655 2.332063 GCTGCTGCTAACCCTCATAA 57.668 50.000 8.53 0.00 36.03 1.90
5351 5724 8.919145 ACCACAACACTTATTTTGGAATAAAGA 58.081 29.630 0.00 0.00 37.30 2.52
5354 5727 9.892130 AAAACCACAACACTTATTTTGGAATAA 57.108 25.926 0.00 0.00 36.54 1.40
5356 5729 9.541143 CTAAAACCACAACACTTATTTTGGAAT 57.459 29.630 0.00 0.00 0.00 3.01
5359 5732 8.710835 AACTAAAACCACAACACTTATTTTGG 57.289 30.769 0.00 0.00 0.00 3.28
5372 5745 9.760077 TTTAAAACAGTTTGAACTAAAACCACA 57.240 25.926 0.00 0.00 40.26 4.17
5405 5778 9.645059 TCTCTCTGTTAAGTGTCATGATTTTAG 57.355 33.333 0.00 0.00 0.00 1.85
5411 5784 5.325239 TCCTCTCTCTGTTAAGTGTCATGA 58.675 41.667 0.00 0.00 0.00 3.07
5414 5787 4.082845 CCTCCTCTCTCTGTTAAGTGTCA 58.917 47.826 0.00 0.00 0.00 3.58
5428 5808 5.476091 TCTTTCAGAAGAAACCTCCTCTC 57.524 43.478 0.00 0.00 38.91 3.20
5429 5809 5.896073 TTCTTTCAGAAGAAACCTCCTCT 57.104 39.130 0.00 0.00 46.15 3.69
5461 5841 3.384168 ACTGGAGATGCTATAACCCACA 58.616 45.455 0.00 0.00 0.00 4.17
5462 5842 3.553096 CGACTGGAGATGCTATAACCCAC 60.553 52.174 0.00 0.00 0.00 4.61
5463 5843 2.628178 CGACTGGAGATGCTATAACCCA 59.372 50.000 0.00 0.00 0.00 4.51
5464 5844 2.628657 ACGACTGGAGATGCTATAACCC 59.371 50.000 0.00 0.00 0.00 4.11
5465 5845 4.299978 GAACGACTGGAGATGCTATAACC 58.700 47.826 0.00 0.00 0.00 2.85
5466 5846 3.975670 CGAACGACTGGAGATGCTATAAC 59.024 47.826 0.00 0.00 0.00 1.89
5467 5847 3.004419 CCGAACGACTGGAGATGCTATAA 59.996 47.826 0.00 0.00 0.00 0.98
5468 5848 2.552743 CCGAACGACTGGAGATGCTATA 59.447 50.000 0.00 0.00 0.00 1.31
5469 5849 1.338337 CCGAACGACTGGAGATGCTAT 59.662 52.381 0.00 0.00 0.00 2.97
5470 5850 0.738975 CCGAACGACTGGAGATGCTA 59.261 55.000 0.00 0.00 0.00 3.49
5502 5883 0.670162 CCCCAGCGGCAATATTTCAG 59.330 55.000 1.45 0.00 0.00 3.02
5534 5916 1.079888 CTGCCCCACGCCAAAATTC 60.080 57.895 0.00 0.00 36.24 2.17
5577 5961 4.400961 GCAGCTGGAGGGCGAACT 62.401 66.667 17.12 0.00 37.29 3.01
5578 5962 4.400961 AGCAGCTGGAGGGCGAAC 62.401 66.667 17.12 0.00 37.29 3.95
5581 5965 3.694058 AATCAGCAGCTGGAGGGCG 62.694 63.158 22.62 0.00 37.29 6.13
5586 5985 0.391661 GGTCGAAATCAGCAGCTGGA 60.392 55.000 22.62 8.35 31.51 3.86
5592 5991 2.091541 GGATTTGGGTCGAAATCAGCA 58.908 47.619 16.31 0.00 42.04 4.41
5620 6040 3.773860 TTATGTTGAATTTGCGCCGAT 57.226 38.095 4.18 0.00 0.00 4.18
5744 6165 0.454957 GCAACGCCTAGTTCGACGTA 60.455 55.000 8.38 0.00 42.02 3.57
5780 6201 1.153289 GCACGATCTGGTGGAGCAT 60.153 57.895 0.00 0.00 38.36 3.79
5818 6239 0.558220 TCAGGAGATCCGAGACCCAT 59.442 55.000 0.00 0.00 42.08 4.00
5905 6326 4.464951 TGTCCGACACTGAACCATATTACT 59.535 41.667 0.00 0.00 0.00 2.24
5925 6346 2.030213 GCGAGCATGAAGAGTCAATGTC 59.970 50.000 0.00 0.00 37.30 3.06
5932 6353 1.180907 TGAGAGCGAGCATGAAGAGT 58.819 50.000 0.00 0.00 0.00 3.24
5961 6382 3.633525 ACTTGTTGTGTCATCTTGCACAT 59.366 39.130 0.00 0.00 43.89 3.21
6058 6480 1.412079 TGTTGAGCAGGCATTTGGTT 58.588 45.000 0.00 0.00 0.00 3.67
6074 6496 0.407139 AGGCTTGCAGGAAGGATGTT 59.593 50.000 0.00 0.00 31.56 2.71
6130 6552 4.593206 TGAAGACTATCTCAAACCCTGTGT 59.407 41.667 0.00 0.00 0.00 3.72
6244 6666 2.819608 GCCAAGCTTGTCAAAGGTCATA 59.180 45.455 24.35 0.00 43.27 2.15
6253 6676 1.761449 TGTCTTTGCCAAGCTTGTCA 58.239 45.000 24.35 16.28 0.00 3.58
6254 6677 3.375782 AATGTCTTTGCCAAGCTTGTC 57.624 42.857 24.35 13.47 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.