Multiple sequence alignment - TraesCS5B01G256300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G256300 chr5B 100.000 5056 0 0 1 5056 439065584 439070639 0.000000e+00 9337.0
1 TraesCS5B01G256300 chr5D 93.954 4863 181 56 233 5056 369723877 369728665 0.000000e+00 7247.0
2 TraesCS5B01G256300 chr5D 82.234 197 27 5 4669 4858 332342550 332342745 4.050000e-36 163.0
3 TraesCS5B01G256300 chr5D 81.538 195 27 6 4672 4858 11368286 11368479 8.770000e-33 152.0
4 TraesCS5B01G256300 chr5A 92.459 4535 198 72 200 4696 472282710 472287138 0.000000e+00 6348.0
5 TraesCS5B01G256300 chr5A 82.051 195 26 6 4672 4858 184803118 184803311 1.880000e-34 158.0
6 TraesCS5B01G256300 chr2D 81.818 847 126 21 1589 2424 518600965 518600136 0.000000e+00 686.0
7 TraesCS5B01G256300 chr2D 81.538 195 27 6 4672 4858 366718011 366718204 8.770000e-33 152.0
8 TraesCS5B01G256300 chr2B 81.582 847 128 22 1589 2424 610694667 610693838 0.000000e+00 675.0
9 TraesCS5B01G256300 chr2B 80.303 462 54 21 2633 3090 610693725 610693297 1.060000e-81 315.0
10 TraesCS5B01G256300 chr2B 82.963 270 33 3 4672 4928 721107631 721107362 1.090000e-56 231.0
11 TraesCS5B01G256300 chr2A 81.176 850 126 27 1589 2424 662747066 662746237 0.000000e+00 652.0
12 TraesCS5B01G256300 chr2A 80.217 460 56 18 2633 3090 662746124 662745698 3.800000e-81 313.0
13 TraesCS5B01G256300 chr1A 74.497 596 123 22 1829 2411 10159820 10159241 1.090000e-56 231.0
14 TraesCS5B01G256300 chr1D 74.329 596 124 23 1829 2411 8925797 8925218 5.090000e-55 226.0
15 TraesCS5B01G256300 chr1D 86.184 152 17 4 4906 5055 42254627 42254776 1.460000e-35 161.0
16 TraesCS5B01G256300 chr1D 81.333 150 26 2 4907 5056 107251442 107251295 2.470000e-23 121.0
17 TraesCS5B01G256300 chr3B 84.242 165 25 1 4668 4831 404836806 404836970 5.240000e-35 159.0
18 TraesCS5B01G256300 chr3B 83.851 161 16 3 4898 5056 368104494 368104342 1.470000e-30 145.0
19 TraesCS5B01G256300 chr3B 78.740 127 22 4 4876 5001 44275594 44275472 4.200000e-11 80.5
20 TraesCS5B01G256300 chr3A 84.242 165 25 1 4668 4831 414823807 414823971 5.240000e-35 159.0
21 TraesCS5B01G256300 chr3D 84.146 164 21 4 4671 4831 315472182 315472021 2.440000e-33 154.0
22 TraesCS5B01G256300 chr7B 85.714 140 17 2 4907 5045 428470689 428470552 1.470000e-30 145.0
23 TraesCS5B01G256300 chr7D 80.864 162 26 3 4831 4992 332258308 332258464 6.870000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G256300 chr5B 439065584 439070639 5055 False 9337.0 9337 100.0000 1 5056 1 chr5B.!!$F1 5055
1 TraesCS5B01G256300 chr5D 369723877 369728665 4788 False 7247.0 7247 93.9540 233 5056 1 chr5D.!!$F3 4823
2 TraesCS5B01G256300 chr5A 472282710 472287138 4428 False 6348.0 6348 92.4590 200 4696 1 chr5A.!!$F2 4496
3 TraesCS5B01G256300 chr2D 518600136 518600965 829 True 686.0 686 81.8180 1589 2424 1 chr2D.!!$R1 835
4 TraesCS5B01G256300 chr2B 610693297 610694667 1370 True 495.0 675 80.9425 1589 3090 2 chr2B.!!$R2 1501
5 TraesCS5B01G256300 chr2A 662745698 662747066 1368 True 482.5 652 80.6965 1589 3090 2 chr2A.!!$R1 1501
6 TraesCS5B01G256300 chr1A 10159241 10159820 579 True 231.0 231 74.4970 1829 2411 1 chr1A.!!$R1 582
7 TraesCS5B01G256300 chr1D 8925218 8925797 579 True 226.0 226 74.3290 1829 2411 1 chr1D.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 949 0.040499 GATATCGAGCCTCCCTCCCT 59.960 60.0 0.00 0.00 37.27 4.20 F
926 950 0.040499 ATATCGAGCCTCCCTCCCTC 59.960 60.0 0.00 0.00 37.27 4.30 F
979 1017 0.179034 CCCTGCTTGCTATCTGGGAC 60.179 60.0 7.97 0.00 42.17 4.46 F
1039 1077 0.458543 CAGCATCAAGTCGTACGGCT 60.459 55.0 18.34 18.34 0.00 5.52 F
2942 2995 0.460284 ATCGACACTGATCCGGTTGC 60.460 55.0 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 2293 0.601558 GAGCACCTTGGTGACGTAGA 59.398 55.000 22.52 0.0 0.00 2.59 R
2924 2977 1.080093 GCAACCGGATCAGTGTCGA 60.080 57.895 9.46 0.0 0.00 4.20 R
2926 2979 0.669318 TTCGCAACCGGATCAGTGTC 60.669 55.000 9.46 0.0 34.56 3.67 R
2951 3004 1.682740 TATGTGCCTGCATCATGGTG 58.317 50.000 0.10 0.1 0.00 4.17 R
4404 4469 1.329599 GAACTCTCGCGGTTGTTTTGT 59.670 47.619 6.13 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.499737 GCCCTCGCCGATGTGTTG 61.500 66.667 0.00 0.00 0.00 3.33
27 28 2.047274 CCCTCGCCGATGTGTTGT 60.047 61.111 0.00 0.00 0.00 3.32
28 29 2.100631 CCCTCGCCGATGTGTTGTC 61.101 63.158 0.00 0.00 0.00 3.18
29 30 2.444624 CCTCGCCGATGTGTTGTCG 61.445 63.158 0.00 0.00 38.75 4.35
30 31 1.733041 CTCGCCGATGTGTTGTCGT 60.733 57.895 0.00 0.00 37.39 4.34
31 32 1.674611 CTCGCCGATGTGTTGTCGTC 61.675 60.000 0.00 0.00 37.39 4.20
32 33 2.769617 GCCGATGTGTTGTCGTCG 59.230 61.111 0.00 0.00 43.66 5.12
33 34 2.769617 CCGATGTGTTGTCGTCGC 59.230 61.111 3.27 0.00 42.99 5.19
34 35 2.726691 CCGATGTGTTGTCGTCGCC 61.727 63.158 3.27 0.00 42.99 5.54
35 36 2.726691 CGATGTGTTGTCGTCGCCC 61.727 63.158 0.00 0.00 39.39 6.13
36 37 2.358247 ATGTGTTGTCGTCGCCCC 60.358 61.111 0.00 0.00 0.00 5.80
37 38 4.953868 TGTGTTGTCGTCGCCCCG 62.954 66.667 0.00 0.00 0.00 5.73
38 39 4.651008 GTGTTGTCGTCGCCCCGA 62.651 66.667 0.00 0.00 33.79 5.14
49 50 3.407967 GCCCCGACCATCCCTCAA 61.408 66.667 0.00 0.00 0.00 3.02
50 51 2.590092 CCCCGACCATCCCTCAAC 59.410 66.667 0.00 0.00 0.00 3.18
51 52 2.590092 CCCGACCATCCCTCAACC 59.410 66.667 0.00 0.00 0.00 3.77
52 53 2.590092 CCGACCATCCCTCAACCC 59.410 66.667 0.00 0.00 0.00 4.11
53 54 2.590092 CGACCATCCCTCAACCCC 59.410 66.667 0.00 0.00 0.00 4.95
54 55 3.007542 GACCATCCCTCAACCCCC 58.992 66.667 0.00 0.00 0.00 5.40
55 56 1.928567 GACCATCCCTCAACCCCCA 60.929 63.158 0.00 0.00 0.00 4.96
56 57 1.230616 ACCATCCCTCAACCCCCAT 60.231 57.895 0.00 0.00 0.00 4.00
57 58 1.289244 ACCATCCCTCAACCCCCATC 61.289 60.000 0.00 0.00 0.00 3.51
58 59 1.538666 CATCCCTCAACCCCCATCC 59.461 63.158 0.00 0.00 0.00 3.51
59 60 0.995675 CATCCCTCAACCCCCATCCT 60.996 60.000 0.00 0.00 0.00 3.24
60 61 0.254299 ATCCCTCAACCCCCATCCTT 60.254 55.000 0.00 0.00 0.00 3.36
61 62 0.423956 TCCCTCAACCCCCATCCTTA 59.576 55.000 0.00 0.00 0.00 2.69
62 63 1.012049 TCCCTCAACCCCCATCCTTAT 59.988 52.381 0.00 0.00 0.00 1.73
63 64 1.425448 CCCTCAACCCCCATCCTTATC 59.575 57.143 0.00 0.00 0.00 1.75
64 65 1.425448 CCTCAACCCCCATCCTTATCC 59.575 57.143 0.00 0.00 0.00 2.59
65 66 1.425448 CTCAACCCCCATCCTTATCCC 59.575 57.143 0.00 0.00 0.00 3.85
66 67 0.482887 CAACCCCCATCCTTATCCCC 59.517 60.000 0.00 0.00 0.00 4.81
67 68 0.048749 AACCCCCATCCTTATCCCCA 59.951 55.000 0.00 0.00 0.00 4.96
68 69 0.701310 ACCCCCATCCTTATCCCCAC 60.701 60.000 0.00 0.00 0.00 4.61
69 70 1.435346 CCCCCATCCTTATCCCCACC 61.435 65.000 0.00 0.00 0.00 4.61
70 71 0.700963 CCCCATCCTTATCCCCACCA 60.701 60.000 0.00 0.00 0.00 4.17
71 72 0.478507 CCCATCCTTATCCCCACCAC 59.521 60.000 0.00 0.00 0.00 4.16
72 73 1.522900 CCATCCTTATCCCCACCACT 58.477 55.000 0.00 0.00 0.00 4.00
73 74 1.421646 CCATCCTTATCCCCACCACTC 59.578 57.143 0.00 0.00 0.00 3.51
74 75 2.126882 CATCCTTATCCCCACCACTCA 58.873 52.381 0.00 0.00 0.00 3.41
75 76 2.587060 TCCTTATCCCCACCACTCAT 57.413 50.000 0.00 0.00 0.00 2.90
76 77 2.408565 TCCTTATCCCCACCACTCATC 58.591 52.381 0.00 0.00 0.00 2.92
77 78 2.022035 TCCTTATCCCCACCACTCATCT 60.022 50.000 0.00 0.00 0.00 2.90
78 79 2.780010 CCTTATCCCCACCACTCATCTT 59.220 50.000 0.00 0.00 0.00 2.40
79 80 3.181450 CCTTATCCCCACCACTCATCTTC 60.181 52.174 0.00 0.00 0.00 2.87
80 81 1.216990 ATCCCCACCACTCATCTTCC 58.783 55.000 0.00 0.00 0.00 3.46
81 82 0.119155 TCCCCACCACTCATCTTCCT 59.881 55.000 0.00 0.00 0.00 3.36
82 83 0.543749 CCCCACCACTCATCTTCCTC 59.456 60.000 0.00 0.00 0.00 3.71
83 84 0.176680 CCCACCACTCATCTTCCTCG 59.823 60.000 0.00 0.00 0.00 4.63
84 85 0.176680 CCACCACTCATCTTCCTCGG 59.823 60.000 0.00 0.00 0.00 4.63
85 86 1.186200 CACCACTCATCTTCCTCGGA 58.814 55.000 0.00 0.00 0.00 4.55
86 87 1.135915 CACCACTCATCTTCCTCGGAG 59.864 57.143 0.00 0.00 0.00 4.63
87 88 0.103937 CCACTCATCTTCCTCGGAGC 59.896 60.000 0.00 0.00 0.00 4.70
88 89 0.103937 CACTCATCTTCCTCGGAGCC 59.896 60.000 0.00 0.00 0.00 4.70
89 90 0.324738 ACTCATCTTCCTCGGAGCCA 60.325 55.000 0.00 0.00 0.00 4.75
90 91 0.388659 CTCATCTTCCTCGGAGCCAG 59.611 60.000 0.00 0.00 0.00 4.85
91 92 1.227497 CATCTTCCTCGGAGCCAGC 60.227 63.158 0.00 0.00 0.00 4.85
92 93 1.687146 ATCTTCCTCGGAGCCAGCA 60.687 57.895 0.00 0.00 0.00 4.41
93 94 1.684386 ATCTTCCTCGGAGCCAGCAG 61.684 60.000 0.00 0.00 0.00 4.24
94 95 2.283894 TTCCTCGGAGCCAGCAGA 60.284 61.111 0.00 0.00 0.00 4.26
95 96 2.570582 CTTCCTCGGAGCCAGCAGAC 62.571 65.000 0.00 0.00 0.00 3.51
96 97 3.073735 CCTCGGAGCCAGCAGACT 61.074 66.667 0.00 0.00 0.00 3.24
97 98 1.754621 CCTCGGAGCCAGCAGACTA 60.755 63.158 0.00 0.00 0.00 2.59
98 99 1.435515 CTCGGAGCCAGCAGACTAC 59.564 63.158 0.00 0.00 0.00 2.73
99 100 2.010582 CTCGGAGCCAGCAGACTACC 62.011 65.000 0.00 0.00 0.00 3.18
100 101 2.055042 CGGAGCCAGCAGACTACCT 61.055 63.158 0.00 0.00 0.00 3.08
101 102 1.519719 GGAGCCAGCAGACTACCTG 59.480 63.158 0.00 0.00 45.67 4.00
102 103 1.261238 GGAGCCAGCAGACTACCTGT 61.261 60.000 0.00 0.00 44.71 4.00
103 104 0.174617 GAGCCAGCAGACTACCTGTC 59.825 60.000 0.00 0.00 44.71 3.51
112 113 1.023502 GACTACCTGTCGCCTCTACC 58.976 60.000 0.00 0.00 35.81 3.18
113 114 0.747283 ACTACCTGTCGCCTCTACCG 60.747 60.000 0.00 0.00 0.00 4.02
114 115 2.061182 CTACCTGTCGCCTCTACCGC 62.061 65.000 0.00 0.00 0.00 5.68
115 116 2.547640 TACCTGTCGCCTCTACCGCT 62.548 60.000 0.00 0.00 0.00 5.52
116 117 2.409651 CTGTCGCCTCTACCGCTC 59.590 66.667 0.00 0.00 0.00 5.03
117 118 3.456431 CTGTCGCCTCTACCGCTCG 62.456 68.421 0.00 0.00 0.00 5.03
118 119 4.908877 GTCGCCTCTACCGCTCGC 62.909 72.222 0.00 0.00 0.00 5.03
120 121 4.615834 CGCCTCTACCGCTCGCTC 62.616 72.222 0.00 0.00 0.00 5.03
121 122 3.213402 GCCTCTACCGCTCGCTCT 61.213 66.667 0.00 0.00 0.00 4.09
122 123 2.776913 GCCTCTACCGCTCGCTCTT 61.777 63.158 0.00 0.00 0.00 2.85
123 124 1.064946 CCTCTACCGCTCGCTCTTG 59.935 63.158 0.00 0.00 0.00 3.02
124 125 1.587613 CTCTACCGCTCGCTCTTGC 60.588 63.158 0.00 0.00 0.00 4.01
125 126 2.583593 CTACCGCTCGCTCTTGCC 60.584 66.667 0.00 0.00 35.36 4.52
126 127 3.356639 CTACCGCTCGCTCTTGCCA 62.357 63.158 0.00 0.00 35.36 4.92
127 128 2.835701 CTACCGCTCGCTCTTGCCAA 62.836 60.000 0.00 0.00 35.36 4.52
128 129 2.238847 TACCGCTCGCTCTTGCCAAT 62.239 55.000 0.00 0.00 35.36 3.16
129 130 2.401766 CCGCTCGCTCTTGCCAATT 61.402 57.895 0.00 0.00 35.36 2.32
130 131 1.503542 CGCTCGCTCTTGCCAATTT 59.496 52.632 0.00 0.00 35.36 1.82
131 132 0.109597 CGCTCGCTCTTGCCAATTTT 60.110 50.000 0.00 0.00 35.36 1.82
132 133 1.622232 GCTCGCTCTTGCCAATTTTC 58.378 50.000 0.00 0.00 35.36 2.29
133 134 1.068333 GCTCGCTCTTGCCAATTTTCA 60.068 47.619 0.00 0.00 35.36 2.69
134 135 2.860062 CTCGCTCTTGCCAATTTTCAG 58.140 47.619 0.00 0.00 35.36 3.02
135 136 1.541147 TCGCTCTTGCCAATTTTCAGG 59.459 47.619 0.00 0.00 35.36 3.86
136 137 1.270550 CGCTCTTGCCAATTTTCAGGT 59.729 47.619 0.00 0.00 35.36 4.00
137 138 2.680577 GCTCTTGCCAATTTTCAGGTG 58.319 47.619 0.00 0.00 0.00 4.00
138 139 2.297033 GCTCTTGCCAATTTTCAGGTGA 59.703 45.455 0.00 0.00 0.00 4.02
139 140 3.858503 GCTCTTGCCAATTTTCAGGTGAC 60.859 47.826 0.00 0.00 0.00 3.67
140 141 3.565307 TCTTGCCAATTTTCAGGTGACT 58.435 40.909 0.00 0.00 46.44 3.41
141 142 3.960102 TCTTGCCAATTTTCAGGTGACTT 59.040 39.130 0.00 0.00 40.21 3.01
142 143 5.136828 TCTTGCCAATTTTCAGGTGACTTA 58.863 37.500 0.00 0.00 40.21 2.24
143 144 4.846779 TGCCAATTTTCAGGTGACTTAC 57.153 40.909 0.00 0.00 40.21 2.34
144 145 4.211125 TGCCAATTTTCAGGTGACTTACA 58.789 39.130 0.00 0.00 40.21 2.41
145 146 4.646945 TGCCAATTTTCAGGTGACTTACAA 59.353 37.500 0.00 0.00 40.21 2.41
146 147 5.127845 TGCCAATTTTCAGGTGACTTACAAA 59.872 36.000 0.00 0.00 40.21 2.83
147 148 6.183360 TGCCAATTTTCAGGTGACTTACAAAT 60.183 34.615 0.00 0.00 40.21 2.32
148 149 6.366061 GCCAATTTTCAGGTGACTTACAAATC 59.634 38.462 0.00 0.00 40.21 2.17
149 150 7.432869 CCAATTTTCAGGTGACTTACAAATCA 58.567 34.615 0.00 0.00 40.21 2.57
150 151 7.382218 CCAATTTTCAGGTGACTTACAAATCAC 59.618 37.037 0.00 0.00 43.75 3.06
151 152 7.581213 ATTTTCAGGTGACTTACAAATCACA 57.419 32.000 5.97 0.00 45.83 3.58
152 153 7.397892 TTTTCAGGTGACTTACAAATCACAA 57.602 32.000 5.97 0.00 45.83 3.33
153 154 7.397892 TTTCAGGTGACTTACAAATCACAAA 57.602 32.000 5.97 0.00 45.83 2.83
154 155 6.371809 TCAGGTGACTTACAAATCACAAAC 57.628 37.500 5.97 0.00 45.83 2.93
155 156 5.883115 TCAGGTGACTTACAAATCACAAACA 59.117 36.000 5.97 0.00 45.83 2.83
156 157 5.971202 CAGGTGACTTACAAATCACAAACAC 59.029 40.000 5.97 0.00 45.83 3.32
157 158 4.967575 GGTGACTTACAAATCACAAACACG 59.032 41.667 5.97 0.00 45.83 4.49
158 159 5.220700 GGTGACTTACAAATCACAAACACGA 60.221 40.000 5.97 0.00 45.83 4.35
159 160 6.252281 GTGACTTACAAATCACAAACACGAA 58.748 36.000 0.00 0.00 43.89 3.85
160 161 6.743627 GTGACTTACAAATCACAAACACGAAA 59.256 34.615 0.00 0.00 43.89 3.46
161 162 7.271653 GTGACTTACAAATCACAAACACGAAAA 59.728 33.333 0.00 0.00 43.89 2.29
162 163 7.483375 TGACTTACAAATCACAAACACGAAAAG 59.517 33.333 0.00 0.00 0.00 2.27
163 164 7.531716 ACTTACAAATCACAAACACGAAAAGA 58.468 30.769 0.00 0.00 0.00 2.52
164 165 8.024285 ACTTACAAATCACAAACACGAAAAGAA 58.976 29.630 0.00 0.00 0.00 2.52
165 166 8.744008 TTACAAATCACAAACACGAAAAGAAA 57.256 26.923 0.00 0.00 0.00 2.52
166 167 7.276953 ACAAATCACAAACACGAAAAGAAAG 57.723 32.000 0.00 0.00 0.00 2.62
167 168 6.866248 ACAAATCACAAACACGAAAAGAAAGT 59.134 30.769 0.00 0.00 0.00 2.66
168 169 8.024285 ACAAATCACAAACACGAAAAGAAAGTA 58.976 29.630 0.00 0.00 0.00 2.24
169 170 8.855279 CAAATCACAAACACGAAAAGAAAGTAA 58.145 29.630 0.00 0.00 0.00 2.24
170 171 8.973835 AATCACAAACACGAAAAGAAAGTAAA 57.026 26.923 0.00 0.00 0.00 2.01
171 172 8.973835 ATCACAAACACGAAAAGAAAGTAAAA 57.026 26.923 0.00 0.00 0.00 1.52
172 173 8.973835 TCACAAACACGAAAAGAAAGTAAAAT 57.026 26.923 0.00 0.00 0.00 1.82
173 174 9.068008 TCACAAACACGAAAAGAAAGTAAAATC 57.932 29.630 0.00 0.00 0.00 2.17
174 175 8.855279 CACAAACACGAAAAGAAAGTAAAATCA 58.145 29.630 0.00 0.00 0.00 2.57
175 176 9.581099 ACAAACACGAAAAGAAAGTAAAATCAT 57.419 25.926 0.00 0.00 0.00 2.45
176 177 9.833894 CAAACACGAAAAGAAAGTAAAATCATG 57.166 29.630 0.00 0.00 0.00 3.07
177 178 7.623268 ACACGAAAAGAAAGTAAAATCATGC 57.377 32.000 0.00 0.00 0.00 4.06
178 179 7.425606 ACACGAAAAGAAAGTAAAATCATGCT 58.574 30.769 0.00 0.00 0.00 3.79
179 180 8.564574 ACACGAAAAGAAAGTAAAATCATGCTA 58.435 29.630 0.00 0.00 0.00 3.49
180 181 8.840867 CACGAAAAGAAAGTAAAATCATGCTAC 58.159 33.333 0.00 0.00 0.00 3.58
181 182 8.784043 ACGAAAAGAAAGTAAAATCATGCTACT 58.216 29.630 0.00 0.00 0.00 2.57
185 186 7.793927 AGAAAGTAAAATCATGCTACTAGCC 57.206 36.000 5.58 0.00 41.51 3.93
186 187 6.480320 AGAAAGTAAAATCATGCTACTAGCCG 59.520 38.462 5.58 0.00 41.51 5.52
187 188 5.531122 AGTAAAATCATGCTACTAGCCGA 57.469 39.130 5.58 3.02 41.51 5.54
188 189 5.533482 AGTAAAATCATGCTACTAGCCGAG 58.467 41.667 5.58 0.00 41.51 4.63
189 190 2.447244 AATCATGCTACTAGCCGAGC 57.553 50.000 5.58 5.20 41.51 5.03
190 191 1.626686 ATCATGCTACTAGCCGAGCT 58.373 50.000 5.58 3.87 41.51 4.09
191 192 0.955178 TCATGCTACTAGCCGAGCTC 59.045 55.000 2.73 2.73 41.51 4.09
192 193 0.670706 CATGCTACTAGCCGAGCTCA 59.329 55.000 15.40 0.00 41.51 4.26
193 194 1.067669 CATGCTACTAGCCGAGCTCAA 59.932 52.381 15.40 0.00 41.51 3.02
194 195 0.456221 TGCTACTAGCCGAGCTCAAC 59.544 55.000 15.40 4.56 41.51 3.18
195 196 0.741915 GCTACTAGCCGAGCTCAACT 59.258 55.000 15.40 12.42 40.44 3.16
196 197 1.135333 GCTACTAGCCGAGCTCAACTT 59.865 52.381 15.40 0.00 40.44 2.66
197 198 2.803451 CTACTAGCCGAGCTCAACTTG 58.197 52.381 15.40 12.90 40.44 3.16
198 199 1.257743 ACTAGCCGAGCTCAACTTGA 58.742 50.000 15.40 0.00 40.44 3.02
210 211 6.576684 CGAGCTCAACTTGATTTCTTTCTTTC 59.423 38.462 15.40 0.00 30.27 2.62
211 212 7.519649 CGAGCTCAACTTGATTTCTTTCTTTCT 60.520 37.037 15.40 0.00 30.27 2.52
214 215 8.750416 GCTCAACTTGATTTCTTTCTTTCTTTC 58.250 33.333 0.00 0.00 0.00 2.62
219 220 9.091784 ACTTGATTTCTTTCTTTCTTTCTTTGC 57.908 29.630 0.00 0.00 0.00 3.68
222 223 9.657419 TGATTTCTTTCTTTCTTTCTTTGCTTT 57.343 25.926 0.00 0.00 0.00 3.51
404 408 0.334676 CCCACCACCACCATTACCAT 59.665 55.000 0.00 0.00 0.00 3.55
406 410 1.005332 CCACCACCACCATTACCATCA 59.995 52.381 0.00 0.00 0.00 3.07
408 412 1.005450 ACCACCACCATTACCATCACC 59.995 52.381 0.00 0.00 0.00 4.02
409 413 1.005332 CCACCACCATTACCATCACCA 59.995 52.381 0.00 0.00 0.00 4.17
410 414 2.358090 CCACCACCATTACCATCACCAT 60.358 50.000 0.00 0.00 0.00 3.55
412 416 2.221169 CCACCATTACCATCACCATCG 58.779 52.381 0.00 0.00 0.00 3.84
413 417 2.221169 CACCATTACCATCACCATCGG 58.779 52.381 0.00 0.00 0.00 4.18
414 418 1.142870 ACCATTACCATCACCATCGGG 59.857 52.381 0.00 0.00 41.29 5.14
415 419 1.545428 CCATTACCATCACCATCGGGG 60.545 57.143 0.00 0.00 44.81 5.73
416 420 1.419762 CATTACCATCACCATCGGGGA 59.580 52.381 0.84 0.00 40.55 4.81
433 438 1.442526 GGACATGCATGGGAGAAGCG 61.443 60.000 29.41 2.41 0.00 4.68
471 480 3.900601 AGGAATCAGCGAGACCATATCTT 59.099 43.478 0.00 0.00 38.00 2.40
472 481 5.080337 AGGAATCAGCGAGACCATATCTTA 58.920 41.667 0.00 0.00 38.00 2.10
474 483 4.792521 ATCAGCGAGACCATATCTTACC 57.207 45.455 0.00 0.00 38.00 2.85
475 484 3.562182 TCAGCGAGACCATATCTTACCA 58.438 45.455 0.00 0.00 38.00 3.25
707 730 2.556287 CACTTTTCACTCGCCGGC 59.444 61.111 19.07 19.07 0.00 6.13
708 731 2.668550 ACTTTTCACTCGCCGGCC 60.669 61.111 23.46 2.84 0.00 6.13
709 732 3.788766 CTTTTCACTCGCCGGCCG 61.789 66.667 23.46 21.04 38.61 6.13
724 747 2.909209 GCCGGAGCAGATCGATCGA 61.909 63.158 21.86 21.86 39.53 3.59
725 748 1.879480 CCGGAGCAGATCGATCGAT 59.121 57.895 29.76 29.76 37.59 3.59
793 817 4.862092 CGTCGCATCGCCTGAGCT 62.862 66.667 0.00 0.00 36.60 4.09
794 818 3.260483 GTCGCATCGCCTGAGCTG 61.260 66.667 0.00 0.00 36.60 4.24
798 822 2.203167 CATCGCCTGAGCTGCCAT 60.203 61.111 0.00 0.00 36.60 4.40
799 823 1.070275 CATCGCCTGAGCTGCCATA 59.930 57.895 0.00 0.00 36.60 2.74
801 825 2.109517 ATCGCCTGAGCTGCCATAGG 62.110 60.000 0.00 9.34 36.60 2.57
914 938 2.865603 CGCGCGACCGATATCGAG 60.866 66.667 28.94 17.58 45.13 4.04
916 940 2.502080 CGCGACCGATATCGAGCC 60.502 66.667 26.32 12.88 45.13 4.70
917 941 2.955402 GCGACCGATATCGAGCCT 59.045 61.111 26.32 5.54 45.13 4.58
918 942 1.154188 GCGACCGATATCGAGCCTC 60.154 63.158 26.32 12.91 45.13 4.70
919 943 1.502640 CGACCGATATCGAGCCTCC 59.497 63.158 26.32 7.35 45.13 4.30
920 944 1.884444 GACCGATATCGAGCCTCCC 59.116 63.158 26.32 3.60 43.02 4.30
921 945 0.609681 GACCGATATCGAGCCTCCCT 60.610 60.000 26.32 0.00 43.02 4.20
922 946 0.609681 ACCGATATCGAGCCTCCCTC 60.610 60.000 26.32 0.00 43.02 4.30
925 949 0.040499 GATATCGAGCCTCCCTCCCT 59.960 60.000 0.00 0.00 37.27 4.20
926 950 0.040499 ATATCGAGCCTCCCTCCCTC 59.960 60.000 0.00 0.00 37.27 4.30
935 973 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
936 974 1.705450 CCCTCCCTCCCTCCCTCTA 60.705 68.421 0.00 0.00 0.00 2.43
937 975 1.083363 CCCTCCCTCCCTCCCTCTAT 61.083 65.000 0.00 0.00 0.00 1.98
947 985 1.575576 CTCCCTCTATACGTCGCCGG 61.576 65.000 0.00 0.00 38.78 6.13
957 995 1.944676 CGTCGCCGGTCATTAGCTC 60.945 63.158 1.90 0.00 0.00 4.09
967 1005 1.153086 CATTAGCTCGCCCCTGCTT 60.153 57.895 0.00 0.00 40.35 3.91
968 1006 1.153086 ATTAGCTCGCCCCTGCTTG 60.153 57.895 0.00 0.00 40.35 4.01
969 1007 3.976701 TTAGCTCGCCCCTGCTTGC 62.977 63.158 0.00 0.00 40.35 4.01
971 1009 4.473520 GCTCGCCCCTGCTTGCTA 62.474 66.667 0.00 0.00 34.43 3.49
972 1010 2.507944 CTCGCCCCTGCTTGCTAT 59.492 61.111 0.00 0.00 34.43 2.97
973 1011 1.596477 CTCGCCCCTGCTTGCTATC 60.596 63.158 0.00 0.00 34.43 2.08
974 1012 2.037620 CTCGCCCCTGCTTGCTATCT 62.038 60.000 0.00 0.00 34.43 1.98
975 1013 1.890979 CGCCCCTGCTTGCTATCTG 60.891 63.158 0.00 0.00 34.43 2.90
976 1014 1.527844 GCCCCTGCTTGCTATCTGG 60.528 63.158 0.00 0.00 33.53 3.86
977 1015 1.150081 CCCCTGCTTGCTATCTGGG 59.850 63.158 6.92 6.92 40.10 4.45
978 1016 1.348008 CCCCTGCTTGCTATCTGGGA 61.348 60.000 13.98 0.00 42.17 4.37
979 1017 0.179034 CCCTGCTTGCTATCTGGGAC 60.179 60.000 7.97 0.00 42.17 4.46
980 1018 0.835941 CCTGCTTGCTATCTGGGACT 59.164 55.000 0.00 0.00 0.00 3.85
981 1019 1.474677 CCTGCTTGCTATCTGGGACTG 60.475 57.143 0.00 0.00 0.00 3.51
982 1020 1.483827 CTGCTTGCTATCTGGGACTGA 59.516 52.381 0.00 0.00 41.39 3.41
983 1021 1.208052 TGCTTGCTATCTGGGACTGAC 59.792 52.381 0.00 0.00 39.59 3.51
1039 1077 0.458543 CAGCATCAAGTCGTACGGCT 60.459 55.000 18.34 18.34 0.00 5.52
1065 1103 1.080705 CTCGGCGTCCTTCGACTTT 60.081 57.895 6.85 0.00 46.75 2.66
1078 1116 2.036387 TCGACTTTGACCAGGACAAGA 58.964 47.619 4.47 0.00 0.00 3.02
1086 1124 3.423154 CAGGACAAGAACCGCGGC 61.423 66.667 28.58 10.42 0.00 6.53
1161 1199 0.987294 CCAGCTCCTTCTCCCTCAAA 59.013 55.000 0.00 0.00 0.00 2.69
1168 1206 2.469465 CTTCTCCCTCAAAGCGCCCA 62.469 60.000 2.29 0.00 0.00 5.36
1332 1370 4.154347 GAGGGGGAGTGCAGCGAG 62.154 72.222 0.00 0.00 0.00 5.03
1998 2048 3.775654 GTCTCGGGGCTCCACCTG 61.776 72.222 1.96 0.00 39.10 4.00
2056 2106 3.785859 GCCTCATGTCCGGCTGGA 61.786 66.667 11.27 11.27 42.98 3.86
2426 2476 2.182030 GCCCTTGGTCGACGAGAG 59.818 66.667 16.46 10.71 31.73 3.20
2610 2663 1.519013 GCAGAGGCAGAAGAGCGAG 60.519 63.158 0.00 0.00 40.72 5.03
2627 2680 3.706373 GCGGCACCTGGAGGAGAA 61.706 66.667 0.00 0.00 38.94 2.87
2907 2960 0.597568 CCGATCCTTGCTTGCAACAA 59.402 50.000 3.70 4.70 0.00 2.83
2911 2964 1.761449 TCCTTGCTTGCAACAACTCA 58.239 45.000 3.70 0.00 0.00 3.41
2924 2977 3.272574 ACAACTCATGCCAAGATCGAT 57.727 42.857 0.00 0.00 0.00 3.59
2925 2978 3.201290 ACAACTCATGCCAAGATCGATC 58.799 45.455 17.91 17.91 0.00 3.69
2926 2979 2.145958 ACTCATGCCAAGATCGATCG 57.854 50.000 19.33 9.36 0.00 3.69
2937 2990 1.533299 AGATCGATCGACACTGATCCG 59.467 52.381 22.06 0.00 41.39 4.18
2942 2995 0.460284 ATCGACACTGATCCGGTTGC 60.460 55.000 0.00 0.00 0.00 4.17
2951 3004 2.322999 GATCCGGTTGCGAATGGTGC 62.323 60.000 0.00 0.00 0.00 5.01
2954 3007 2.258286 GGTTGCGAATGGTGCACC 59.742 61.111 29.67 29.67 43.10 5.01
3360 3419 2.891461 CTTTCGACGTCGGCGATCGA 62.891 60.000 35.05 26.10 46.77 3.59
3515 3575 0.535335 TGACCACCATCTTCCTACGC 59.465 55.000 0.00 0.00 0.00 4.42
3590 3650 1.471119 TGAACTACTACAGGAGCCCG 58.529 55.000 0.00 0.00 0.00 6.13
3681 3741 0.108615 GAGGCTGATGCAGTACGTGT 60.109 55.000 0.00 0.00 41.91 4.49
3716 3776 4.121317 CTCAACTGAAATTTGCTGCCAAA 58.879 39.130 0.00 0.00 44.39 3.28
3757 3817 4.580167 TGAGCAATATTAAGCCCATGTCAC 59.420 41.667 0.00 0.00 0.00 3.67
3803 3863 0.984995 AGAAAGAGCACTGGTACCCC 59.015 55.000 10.07 0.00 0.00 4.95
4061 4121 5.363939 TGGGCGTTGAATTTTTGAAATTCT 58.636 33.333 20.47 0.00 37.50 2.40
4108 4168 7.549488 AGATTGTGGAGTAAAGTTGCTATGTAC 59.451 37.037 0.00 0.00 0.00 2.90
4261 4321 8.999431 TCTAATACAAAAAGATTGGACAGACAC 58.001 33.333 0.00 0.00 0.00 3.67
4268 4331 3.660865 AGATTGGACAGACACGTTAACC 58.339 45.455 0.00 0.00 0.00 2.85
4351 4416 9.190317 TCTATTTCTCTAGCTCACTAAACATGA 57.810 33.333 0.00 0.00 0.00 3.07
4404 4469 1.335597 ACTCAAAACGTCGCATCGAGA 60.336 47.619 8.72 0.00 36.23 4.04
4450 4516 8.031864 CACAACCAACCTTTGCATACATATAAA 58.968 33.333 0.00 0.00 0.00 1.40
4487 4553 6.778834 TCCAAAATATCATGCTTCACACAT 57.221 33.333 0.00 0.00 0.00 3.21
4492 4558 9.447040 CAAAATATCATGCTTCACACATTCTAG 57.553 33.333 0.00 0.00 0.00 2.43
4628 4699 3.439513 TAGCTGGGTACATGCCGCG 62.440 63.158 0.00 0.00 0.00 6.46
4630 4701 2.108976 CTGGGTACATGCCGCGAT 59.891 61.111 8.23 0.00 0.00 4.58
4640 4711 0.104855 ATGCCGCGATAAGAAGCTCA 59.895 50.000 8.23 0.00 0.00 4.26
4649 4720 3.060674 CGATAAGAAGCTCATTGTGCTCG 60.061 47.826 13.18 8.19 40.22 5.03
4653 4724 2.437359 GCTCATTGTGCTCGGGCT 60.437 61.111 9.62 0.00 39.59 5.19
4792 4863 8.945195 AGGAAATGCATGAAGAATATTGGATA 57.055 30.769 0.00 0.00 0.00 2.59
4827 4898 5.934625 ACCCGTCAAGATAAAGATATGCATC 59.065 40.000 0.19 0.00 0.00 3.91
4894 4965 9.609346 TGCATTGAGATATATTCCATATGTGAG 57.391 33.333 1.24 0.00 0.00 3.51
4901 4972 8.775151 AGATATATTCCATATGTGAGGCATGAA 58.225 33.333 0.00 0.00 38.47 2.57
4905 4976 5.314718 TCCATATGTGAGGCATGAAGAAT 57.685 39.130 0.00 0.00 38.47 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.499737 CAACACATCGGCGAGGGC 61.500 66.667 25.96 0.00 38.90 5.19
10 11 2.047274 ACAACACATCGGCGAGGG 60.047 61.111 25.96 17.35 0.00 4.30
11 12 2.444624 CGACAACACATCGGCGAGG 61.445 63.158 20.97 20.97 35.92 4.63
12 13 1.674611 GACGACAACACATCGGCGAG 61.675 60.000 17.22 10.20 43.95 5.03
13 14 1.731613 GACGACAACACATCGGCGA 60.732 57.895 13.87 13.87 43.95 5.54
14 15 2.769617 GACGACAACACATCGGCG 59.230 61.111 0.00 0.00 43.95 6.46
15 16 2.769617 CGACGACAACACATCGGC 59.230 61.111 0.00 0.00 44.45 5.54
16 17 2.726691 GGCGACGACAACACATCGG 61.727 63.158 0.00 0.00 43.95 4.18
17 18 2.726691 GGGCGACGACAACACATCG 61.727 63.158 1.63 0.00 45.17 3.84
18 19 2.388232 GGGGCGACGACAACACATC 61.388 63.158 1.63 0.00 0.00 3.06
19 20 2.358247 GGGGCGACGACAACACAT 60.358 61.111 1.63 0.00 0.00 3.21
20 21 4.953868 CGGGGCGACGACAACACA 62.954 66.667 1.63 0.00 35.47 3.72
21 22 4.651008 TCGGGGCGACGACAACAC 62.651 66.667 1.63 0.00 38.06 3.32
32 33 3.407967 TTGAGGGATGGTCGGGGC 61.408 66.667 0.00 0.00 0.00 5.80
33 34 2.590092 GTTGAGGGATGGTCGGGG 59.410 66.667 0.00 0.00 0.00 5.73
34 35 2.590092 GGTTGAGGGATGGTCGGG 59.410 66.667 0.00 0.00 0.00 5.14
35 36 2.590092 GGGTTGAGGGATGGTCGG 59.410 66.667 0.00 0.00 0.00 4.79
36 37 2.590092 GGGGTTGAGGGATGGTCG 59.410 66.667 0.00 0.00 0.00 4.79
37 38 1.289244 ATGGGGGTTGAGGGATGGTC 61.289 60.000 0.00 0.00 0.00 4.02
38 39 1.230616 ATGGGGGTTGAGGGATGGT 60.231 57.895 0.00 0.00 0.00 3.55
39 40 1.538666 GATGGGGGTTGAGGGATGG 59.461 63.158 0.00 0.00 0.00 3.51
40 41 0.995675 AGGATGGGGGTTGAGGGATG 60.996 60.000 0.00 0.00 0.00 3.51
41 42 0.254299 AAGGATGGGGGTTGAGGGAT 60.254 55.000 0.00 0.00 0.00 3.85
42 43 0.423956 TAAGGATGGGGGTTGAGGGA 59.576 55.000 0.00 0.00 0.00 4.20
43 44 1.425448 GATAAGGATGGGGGTTGAGGG 59.575 57.143 0.00 0.00 0.00 4.30
44 45 1.425448 GGATAAGGATGGGGGTTGAGG 59.575 57.143 0.00 0.00 0.00 3.86
45 46 1.425448 GGGATAAGGATGGGGGTTGAG 59.575 57.143 0.00 0.00 0.00 3.02
46 47 1.529744 GGGATAAGGATGGGGGTTGA 58.470 55.000 0.00 0.00 0.00 3.18
47 48 0.482887 GGGGATAAGGATGGGGGTTG 59.517 60.000 0.00 0.00 0.00 3.77
48 49 0.048749 TGGGGATAAGGATGGGGGTT 59.951 55.000 0.00 0.00 0.00 4.11
49 50 0.701310 GTGGGGATAAGGATGGGGGT 60.701 60.000 0.00 0.00 0.00 4.95
50 51 1.435346 GGTGGGGATAAGGATGGGGG 61.435 65.000 0.00 0.00 0.00 5.40
51 52 0.700963 TGGTGGGGATAAGGATGGGG 60.701 60.000 0.00 0.00 0.00 4.96
52 53 0.478507 GTGGTGGGGATAAGGATGGG 59.521 60.000 0.00 0.00 0.00 4.00
53 54 1.421646 GAGTGGTGGGGATAAGGATGG 59.578 57.143 0.00 0.00 0.00 3.51
54 55 2.126882 TGAGTGGTGGGGATAAGGATG 58.873 52.381 0.00 0.00 0.00 3.51
55 56 2.587060 TGAGTGGTGGGGATAAGGAT 57.413 50.000 0.00 0.00 0.00 3.24
56 57 2.022035 AGATGAGTGGTGGGGATAAGGA 60.022 50.000 0.00 0.00 0.00 3.36
57 58 2.412591 AGATGAGTGGTGGGGATAAGG 58.587 52.381 0.00 0.00 0.00 2.69
58 59 3.181450 GGAAGATGAGTGGTGGGGATAAG 60.181 52.174 0.00 0.00 0.00 1.73
59 60 2.777692 GGAAGATGAGTGGTGGGGATAA 59.222 50.000 0.00 0.00 0.00 1.75
60 61 2.022035 AGGAAGATGAGTGGTGGGGATA 60.022 50.000 0.00 0.00 0.00 2.59
61 62 1.216990 GGAAGATGAGTGGTGGGGAT 58.783 55.000 0.00 0.00 0.00 3.85
62 63 0.119155 AGGAAGATGAGTGGTGGGGA 59.881 55.000 0.00 0.00 0.00 4.81
63 64 0.543749 GAGGAAGATGAGTGGTGGGG 59.456 60.000 0.00 0.00 0.00 4.96
64 65 0.176680 CGAGGAAGATGAGTGGTGGG 59.823 60.000 0.00 0.00 0.00 4.61
65 66 0.176680 CCGAGGAAGATGAGTGGTGG 59.823 60.000 0.00 0.00 0.00 4.61
66 67 1.135915 CTCCGAGGAAGATGAGTGGTG 59.864 57.143 0.00 0.00 0.00 4.17
67 68 1.479709 CTCCGAGGAAGATGAGTGGT 58.520 55.000 0.00 0.00 0.00 4.16
68 69 0.103937 GCTCCGAGGAAGATGAGTGG 59.896 60.000 0.00 0.00 0.00 4.00
69 70 0.103937 GGCTCCGAGGAAGATGAGTG 59.896 60.000 0.00 0.00 0.00 3.51
70 71 0.324738 TGGCTCCGAGGAAGATGAGT 60.325 55.000 0.00 0.00 0.00 3.41
71 72 0.388659 CTGGCTCCGAGGAAGATGAG 59.611 60.000 0.00 0.00 0.00 2.90
72 73 1.680522 GCTGGCTCCGAGGAAGATGA 61.681 60.000 0.00 0.00 0.00 2.92
73 74 1.227497 GCTGGCTCCGAGGAAGATG 60.227 63.158 0.00 0.00 0.00 2.90
74 75 1.684386 CTGCTGGCTCCGAGGAAGAT 61.684 60.000 0.00 0.00 0.00 2.40
75 76 2.283894 TGCTGGCTCCGAGGAAGA 60.284 61.111 0.00 0.00 0.00 2.87
76 77 2.186384 CTGCTGGCTCCGAGGAAG 59.814 66.667 0.00 0.00 0.00 3.46
77 78 2.283894 TCTGCTGGCTCCGAGGAA 60.284 61.111 0.00 0.00 0.00 3.36
78 79 2.211468 TAGTCTGCTGGCTCCGAGGA 62.211 60.000 0.00 0.00 0.00 3.71
79 80 1.754621 TAGTCTGCTGGCTCCGAGG 60.755 63.158 0.00 0.00 0.00 4.63
80 81 1.435515 GTAGTCTGCTGGCTCCGAG 59.564 63.158 0.00 0.00 0.00 4.63
81 82 2.052690 GGTAGTCTGCTGGCTCCGA 61.053 63.158 0.00 0.00 0.00 4.55
82 83 2.055042 AGGTAGTCTGCTGGCTCCG 61.055 63.158 0.00 0.00 0.00 4.63
83 84 1.519719 CAGGTAGTCTGCTGGCTCC 59.480 63.158 0.00 3.40 36.60 4.70
92 93 1.408544 GGTAGAGGCGACAGGTAGTCT 60.409 57.143 0.00 0.00 45.32 3.24
93 94 1.023502 GGTAGAGGCGACAGGTAGTC 58.976 60.000 0.00 0.00 44.02 2.59
94 95 0.747283 CGGTAGAGGCGACAGGTAGT 60.747 60.000 0.00 0.00 0.00 2.73
95 96 2.023318 CGGTAGAGGCGACAGGTAG 58.977 63.158 0.00 0.00 0.00 3.18
96 97 2.117156 GCGGTAGAGGCGACAGGTA 61.117 63.158 0.00 0.00 0.00 3.08
97 98 3.450115 GCGGTAGAGGCGACAGGT 61.450 66.667 0.00 0.00 0.00 4.00
98 99 3.127352 GAGCGGTAGAGGCGACAGG 62.127 68.421 0.00 0.00 35.00 4.00
99 100 2.409651 GAGCGGTAGAGGCGACAG 59.590 66.667 0.00 0.00 35.00 3.51
100 101 3.506096 CGAGCGGTAGAGGCGACA 61.506 66.667 0.00 0.00 35.00 4.35
101 102 4.908877 GCGAGCGGTAGAGGCGAC 62.909 72.222 0.00 0.00 35.00 5.19
103 104 4.615834 GAGCGAGCGGTAGAGGCG 62.616 72.222 0.00 0.00 35.00 5.52
104 105 2.776913 AAGAGCGAGCGGTAGAGGC 61.777 63.158 0.00 0.00 0.00 4.70
105 106 1.064946 CAAGAGCGAGCGGTAGAGG 59.935 63.158 0.00 0.00 0.00 3.69
106 107 1.587613 GCAAGAGCGAGCGGTAGAG 60.588 63.158 0.00 0.00 0.00 2.43
107 108 2.490217 GCAAGAGCGAGCGGTAGA 59.510 61.111 0.00 0.00 0.00 2.59
108 109 2.583593 GGCAAGAGCGAGCGGTAG 60.584 66.667 0.00 0.00 43.41 3.18
109 110 2.238847 ATTGGCAAGAGCGAGCGGTA 62.239 55.000 5.96 0.00 43.41 4.02
110 111 3.612247 ATTGGCAAGAGCGAGCGGT 62.612 57.895 5.96 0.00 43.41 5.68
111 112 1.926511 AAATTGGCAAGAGCGAGCGG 61.927 55.000 5.96 0.00 43.41 5.52
112 113 0.109597 AAAATTGGCAAGAGCGAGCG 60.110 50.000 5.96 0.00 43.41 5.03
113 114 1.068333 TGAAAATTGGCAAGAGCGAGC 60.068 47.619 5.96 0.00 43.41 5.03
114 115 2.415090 CCTGAAAATTGGCAAGAGCGAG 60.415 50.000 5.96 0.00 43.41 5.03
115 116 1.541147 CCTGAAAATTGGCAAGAGCGA 59.459 47.619 5.96 0.00 43.41 4.93
116 117 1.270550 ACCTGAAAATTGGCAAGAGCG 59.729 47.619 5.96 0.00 43.41 5.03
117 118 2.297033 TCACCTGAAAATTGGCAAGAGC 59.703 45.455 5.96 0.00 41.10 4.09
118 119 3.571401 AGTCACCTGAAAATTGGCAAGAG 59.429 43.478 5.96 0.00 0.00 2.85
119 120 3.565307 AGTCACCTGAAAATTGGCAAGA 58.435 40.909 5.96 0.00 0.00 3.02
120 121 4.326504 AAGTCACCTGAAAATTGGCAAG 57.673 40.909 5.96 0.00 0.00 4.01
121 122 4.646945 TGTAAGTCACCTGAAAATTGGCAA 59.353 37.500 0.68 0.68 0.00 4.52
122 123 4.211125 TGTAAGTCACCTGAAAATTGGCA 58.789 39.130 0.00 0.00 0.00 4.92
123 124 4.846779 TGTAAGTCACCTGAAAATTGGC 57.153 40.909 0.00 0.00 0.00 4.52
124 125 7.382218 GTGATTTGTAAGTCACCTGAAAATTGG 59.618 37.037 8.55 0.00 38.98 3.16
125 126 7.920151 TGTGATTTGTAAGTCACCTGAAAATTG 59.080 33.333 14.91 0.00 43.09 2.32
126 127 8.006298 TGTGATTTGTAAGTCACCTGAAAATT 57.994 30.769 14.91 0.00 43.09 1.82
127 128 7.581213 TGTGATTTGTAAGTCACCTGAAAAT 57.419 32.000 14.91 0.00 43.09 1.82
128 129 7.397892 TTGTGATTTGTAAGTCACCTGAAAA 57.602 32.000 14.91 3.06 43.09 2.29
129 130 7.094162 TGTTTGTGATTTGTAAGTCACCTGAAA 60.094 33.333 14.91 8.25 43.09 2.69
130 131 6.375736 TGTTTGTGATTTGTAAGTCACCTGAA 59.624 34.615 14.91 7.05 43.09 3.02
131 132 5.883115 TGTTTGTGATTTGTAAGTCACCTGA 59.117 36.000 14.91 2.41 43.09 3.86
132 133 5.971202 GTGTTTGTGATTTGTAAGTCACCTG 59.029 40.000 14.91 0.00 43.09 4.00
133 134 5.220777 CGTGTTTGTGATTTGTAAGTCACCT 60.221 40.000 14.91 0.00 43.09 4.00
134 135 4.967575 CGTGTTTGTGATTTGTAAGTCACC 59.032 41.667 14.91 3.90 43.09 4.02
135 136 5.802064 TCGTGTTTGTGATTTGTAAGTCAC 58.198 37.500 11.83 11.83 43.81 3.67
136 137 6.424176 TTCGTGTTTGTGATTTGTAAGTCA 57.576 33.333 0.00 0.00 0.00 3.41
137 138 7.694784 TCTTTTCGTGTTTGTGATTTGTAAGTC 59.305 33.333 0.00 0.00 0.00 3.01
138 139 7.531716 TCTTTTCGTGTTTGTGATTTGTAAGT 58.468 30.769 0.00 0.00 0.00 2.24
139 140 7.962934 TCTTTTCGTGTTTGTGATTTGTAAG 57.037 32.000 0.00 0.00 0.00 2.34
140 141 8.744008 TTTCTTTTCGTGTTTGTGATTTGTAA 57.256 26.923 0.00 0.00 0.00 2.41
141 142 8.024285 ACTTTCTTTTCGTGTTTGTGATTTGTA 58.976 29.630 0.00 0.00 0.00 2.41
142 143 6.866248 ACTTTCTTTTCGTGTTTGTGATTTGT 59.134 30.769 0.00 0.00 0.00 2.83
143 144 7.276953 ACTTTCTTTTCGTGTTTGTGATTTG 57.723 32.000 0.00 0.00 0.00 2.32
144 145 8.973835 TTACTTTCTTTTCGTGTTTGTGATTT 57.026 26.923 0.00 0.00 0.00 2.17
145 146 8.973835 TTTACTTTCTTTTCGTGTTTGTGATT 57.026 26.923 0.00 0.00 0.00 2.57
146 147 8.973835 TTTTACTTTCTTTTCGTGTTTGTGAT 57.026 26.923 0.00 0.00 0.00 3.06
147 148 8.973835 ATTTTACTTTCTTTTCGTGTTTGTGA 57.026 26.923 0.00 0.00 0.00 3.58
148 149 8.855279 TGATTTTACTTTCTTTTCGTGTTTGTG 58.145 29.630 0.00 0.00 0.00 3.33
149 150 8.973835 TGATTTTACTTTCTTTTCGTGTTTGT 57.026 26.923 0.00 0.00 0.00 2.83
150 151 9.833894 CATGATTTTACTTTCTTTTCGTGTTTG 57.166 29.630 0.00 0.00 0.00 2.93
151 152 8.539674 GCATGATTTTACTTTCTTTTCGTGTTT 58.460 29.630 0.00 0.00 0.00 2.83
152 153 7.920682 AGCATGATTTTACTTTCTTTTCGTGTT 59.079 29.630 0.00 0.00 0.00 3.32
153 154 7.425606 AGCATGATTTTACTTTCTTTTCGTGT 58.574 30.769 0.00 0.00 0.00 4.49
154 155 7.858052 AGCATGATTTTACTTTCTTTTCGTG 57.142 32.000 0.00 0.00 0.00 4.35
155 156 8.784043 AGTAGCATGATTTTACTTTCTTTTCGT 58.216 29.630 0.00 0.00 0.00 3.85
159 160 8.678199 GGCTAGTAGCATGATTTTACTTTCTTT 58.322 33.333 23.24 0.00 44.75 2.52
160 161 7.011482 CGGCTAGTAGCATGATTTTACTTTCTT 59.989 37.037 23.24 0.00 44.75 2.52
161 162 6.480320 CGGCTAGTAGCATGATTTTACTTTCT 59.520 38.462 23.24 0.00 44.75 2.52
162 163 6.479001 TCGGCTAGTAGCATGATTTTACTTTC 59.521 38.462 23.24 0.32 44.75 2.62
163 164 6.346096 TCGGCTAGTAGCATGATTTTACTTT 58.654 36.000 23.24 0.00 44.75 2.66
164 165 5.914033 TCGGCTAGTAGCATGATTTTACTT 58.086 37.500 23.24 0.00 44.75 2.24
165 166 5.531122 TCGGCTAGTAGCATGATTTTACT 57.469 39.130 23.24 0.00 44.75 2.24
166 167 4.150804 GCTCGGCTAGTAGCATGATTTTAC 59.849 45.833 23.24 2.14 44.75 2.01
167 168 4.039245 AGCTCGGCTAGTAGCATGATTTTA 59.961 41.667 23.24 0.00 44.75 1.52
168 169 3.134458 GCTCGGCTAGTAGCATGATTTT 58.866 45.455 23.24 0.00 44.75 1.82
169 170 2.366916 AGCTCGGCTAGTAGCATGATTT 59.633 45.455 23.24 8.76 44.75 2.17
170 171 1.967066 AGCTCGGCTAGTAGCATGATT 59.033 47.619 23.24 9.06 44.75 2.57
171 172 1.543802 GAGCTCGGCTAGTAGCATGAT 59.456 52.381 23.24 11.05 44.75 2.45
172 173 0.955178 GAGCTCGGCTAGTAGCATGA 59.045 55.000 23.24 17.93 44.75 3.07
173 174 0.670706 TGAGCTCGGCTAGTAGCATG 59.329 55.000 23.24 14.79 44.75 4.06
174 175 1.067821 GTTGAGCTCGGCTAGTAGCAT 59.932 52.381 23.24 3.85 44.75 3.79
175 176 0.456221 GTTGAGCTCGGCTAGTAGCA 59.544 55.000 23.24 3.24 44.75 3.49
176 177 0.741915 AGTTGAGCTCGGCTAGTAGC 59.258 55.000 14.09 14.09 39.88 3.58
177 178 2.423892 TCAAGTTGAGCTCGGCTAGTAG 59.576 50.000 9.64 0.00 39.88 2.57
178 179 2.443416 TCAAGTTGAGCTCGGCTAGTA 58.557 47.619 9.64 0.00 39.88 1.82
179 180 1.257743 TCAAGTTGAGCTCGGCTAGT 58.742 50.000 9.64 0.00 39.88 2.57
180 181 2.593346 ATCAAGTTGAGCTCGGCTAG 57.407 50.000 11.91 0.00 39.88 3.42
181 182 3.055819 AGAAATCAAGTTGAGCTCGGCTA 60.056 43.478 11.91 0.00 39.88 3.93
182 183 2.079925 GAAATCAAGTTGAGCTCGGCT 58.920 47.619 11.91 6.63 43.88 5.52
183 184 2.079925 AGAAATCAAGTTGAGCTCGGC 58.920 47.619 11.91 4.14 0.00 5.54
184 185 4.453819 AGAAAGAAATCAAGTTGAGCTCGG 59.546 41.667 11.91 0.00 0.00 4.63
185 186 5.604010 AGAAAGAAATCAAGTTGAGCTCG 57.396 39.130 11.91 0.00 0.00 5.03
186 187 7.647228 AGAAAGAAAGAAATCAAGTTGAGCTC 58.353 34.615 11.91 6.82 0.00 4.09
187 188 7.579761 AGAAAGAAAGAAATCAAGTTGAGCT 57.420 32.000 11.91 5.86 0.00 4.09
188 189 8.640091 AAAGAAAGAAAGAAATCAAGTTGAGC 57.360 30.769 11.91 3.62 0.00 4.26
193 194 9.091784 GCAAAGAAAGAAAGAAAGAAATCAAGT 57.908 29.630 0.00 0.00 0.00 3.16
194 195 9.310716 AGCAAAGAAAGAAAGAAAGAAATCAAG 57.689 29.630 0.00 0.00 0.00 3.02
195 196 9.657419 AAGCAAAGAAAGAAAGAAAGAAATCAA 57.343 25.926 0.00 0.00 0.00 2.57
196 197 9.657419 AAAGCAAAGAAAGAAAGAAAGAAATCA 57.343 25.926 0.00 0.00 0.00 2.57
222 223 8.125448 CGATGGCCAAAGAAAACATTTTTAAAA 58.875 29.630 10.96 0.00 0.00 1.52
225 226 5.178438 GCGATGGCCAAAGAAAACATTTTTA 59.822 36.000 10.96 0.00 0.00 1.52
231 232 0.039617 CGCGATGGCCAAAGAAAACA 60.040 50.000 10.96 0.00 35.02 2.83
404 408 1.634865 ATGCATGTCCCCGATGGTGA 61.635 55.000 0.00 0.00 34.77 4.02
406 410 1.152902 CATGCATGTCCCCGATGGT 60.153 57.895 18.91 0.00 34.77 3.55
408 412 1.900016 CCCATGCATGTCCCCGATG 60.900 63.158 24.58 7.10 0.00 3.84
409 413 2.060567 CTCCCATGCATGTCCCCGAT 62.061 60.000 24.58 0.00 0.00 4.18
410 414 2.690510 TCCCATGCATGTCCCCGA 60.691 61.111 24.58 9.30 0.00 5.14
412 416 0.466922 CTTCTCCCATGCATGTCCCC 60.467 60.000 24.58 0.00 0.00 4.81
413 417 1.105759 GCTTCTCCCATGCATGTCCC 61.106 60.000 24.58 2.94 0.00 4.46
414 418 1.442526 CGCTTCTCCCATGCATGTCC 61.443 60.000 24.58 4.53 0.00 4.02
415 419 2.020131 CGCTTCTCCCATGCATGTC 58.980 57.895 24.58 4.59 0.00 3.06
416 420 2.117156 GCGCTTCTCCCATGCATGT 61.117 57.895 24.58 0.00 0.00 3.21
433 438 0.608640 TCCTTTCCTCGTCTCTTGGC 59.391 55.000 0.00 0.00 0.00 4.52
471 480 1.347243 GGCCTATTTCGGGGGTGGTA 61.347 60.000 0.00 0.00 0.00 3.25
472 481 2.686572 GGCCTATTTCGGGGGTGGT 61.687 63.158 0.00 0.00 0.00 4.16
474 483 1.148498 GAGGCCTATTTCGGGGGTG 59.852 63.158 4.42 0.00 0.00 4.61
475 484 2.076803 GGAGGCCTATTTCGGGGGT 61.077 63.158 4.42 0.00 0.00 4.95
679 702 1.264288 GTGAAAAGTGGAAGCTGTCGG 59.736 52.381 0.00 0.00 0.00 4.79
707 730 0.179176 GATCGATCGATCTGCTCCGG 60.179 60.000 38.45 0.00 45.42 5.14
708 731 3.304586 GATCGATCGATCTGCTCCG 57.695 57.895 38.45 9.53 45.42 4.63
719 742 1.025812 ACCTGACCTGACGATCGATC 58.974 55.000 24.34 15.68 0.00 3.69
724 747 0.891373 CTGTCACCTGACCTGACGAT 59.109 55.000 2.98 0.00 44.15 3.73
725 748 0.179001 TCTGTCACCTGACCTGACGA 60.179 55.000 2.98 0.00 44.15 4.20
726 749 0.039074 GTCTGTCACCTGACCTGACG 60.039 60.000 2.98 0.00 44.15 4.35
838 862 1.600957 GATCAGGCACGTACGTAGCTA 59.399 52.381 28.72 19.91 0.00 3.32
839 863 0.381089 GATCAGGCACGTACGTAGCT 59.619 55.000 28.72 16.99 0.00 3.32
840 864 0.928908 CGATCAGGCACGTACGTAGC 60.929 60.000 22.34 23.98 0.00 3.58
841 865 0.316772 CCGATCAGGCACGTACGTAG 60.317 60.000 22.34 16.04 0.00 3.51
842 866 0.744057 TCCGATCAGGCACGTACGTA 60.744 55.000 22.34 5.28 40.77 3.57
843 867 1.989966 CTCCGATCAGGCACGTACGT 61.990 60.000 16.72 16.72 40.77 3.57
844 868 1.298413 CTCCGATCAGGCACGTACG 60.298 63.158 15.01 15.01 40.77 3.67
845 869 1.065928 CCTCCGATCAGGCACGTAC 59.934 63.158 0.00 0.00 40.77 3.67
902 926 0.609681 AGGGAGGCTCGATATCGGTC 60.610 60.000 24.12 16.10 40.29 4.79
904 928 1.316706 GGAGGGAGGCTCGATATCGG 61.317 65.000 24.12 15.68 40.29 4.18
905 929 1.316706 GGGAGGGAGGCTCGATATCG 61.317 65.000 19.14 19.14 41.45 2.92
906 930 0.040499 AGGGAGGGAGGCTCGATATC 59.960 60.000 8.69 3.57 0.00 1.63
907 931 0.040499 GAGGGAGGGAGGCTCGATAT 59.960 60.000 8.69 0.00 0.00 1.63
908 932 1.461144 GAGGGAGGGAGGCTCGATA 59.539 63.158 8.69 0.00 0.00 2.92
909 933 2.200092 GAGGGAGGGAGGCTCGAT 59.800 66.667 8.69 0.00 0.00 3.59
910 934 4.144727 GGAGGGAGGGAGGCTCGA 62.145 72.222 8.69 0.00 0.00 4.04
912 936 3.767044 GAGGGAGGGAGGGAGGCTC 62.767 73.684 5.78 5.78 0.00 4.70
913 937 3.773154 GAGGGAGGGAGGGAGGCT 61.773 72.222 0.00 0.00 0.00 4.58
914 938 4.890306 GGAGGGAGGGAGGGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
916 940 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
917 941 2.237751 TAGAGGGAGGGAGGGAGGGA 62.238 65.000 0.00 0.00 0.00 4.20
918 942 1.083363 ATAGAGGGAGGGAGGGAGGG 61.083 65.000 0.00 0.00 0.00 4.30
919 943 1.359818 GTATAGAGGGAGGGAGGGAGG 59.640 61.905 0.00 0.00 0.00 4.30
920 944 1.004979 CGTATAGAGGGAGGGAGGGAG 59.995 61.905 0.00 0.00 0.00 4.30
921 945 1.073931 CGTATAGAGGGAGGGAGGGA 58.926 60.000 0.00 0.00 0.00 4.20
922 946 0.778720 ACGTATAGAGGGAGGGAGGG 59.221 60.000 0.00 0.00 0.00 4.30
925 949 0.250640 GCGACGTATAGAGGGAGGGA 60.251 60.000 0.00 0.00 0.00 4.20
926 950 1.242665 GGCGACGTATAGAGGGAGGG 61.243 65.000 0.00 0.00 0.00 4.30
947 985 1.889573 GCAGGGGCGAGCTAATGAC 60.890 63.158 0.00 0.00 0.00 3.06
967 1005 1.007118 TGAGGTCAGTCCCAGATAGCA 59.993 52.381 0.00 0.00 36.75 3.49
968 1006 1.686052 CTGAGGTCAGTCCCAGATAGC 59.314 57.143 0.00 0.00 39.09 2.97
969 1007 2.315176 CCTGAGGTCAGTCCCAGATAG 58.685 57.143 6.25 0.00 42.27 2.08
970 1008 1.689575 GCCTGAGGTCAGTCCCAGATA 60.690 57.143 0.00 0.00 42.27 1.98
971 1009 0.980231 GCCTGAGGTCAGTCCCAGAT 60.980 60.000 0.00 0.00 42.27 2.90
972 1010 1.610673 GCCTGAGGTCAGTCCCAGA 60.611 63.158 0.00 0.00 42.27 3.86
973 1011 2.985456 GCCTGAGGTCAGTCCCAG 59.015 66.667 0.00 0.00 42.27 4.45
974 1012 2.997315 CGCCTGAGGTCAGTCCCA 60.997 66.667 0.00 0.00 42.27 4.37
975 1013 3.775654 CCGCCTGAGGTCAGTCCC 61.776 72.222 0.00 0.00 42.27 4.46
976 1014 2.680352 TCCGCCTGAGGTCAGTCC 60.680 66.667 0.00 0.00 42.27 3.85
977 1015 2.888863 CTCCGCCTGAGGTCAGTC 59.111 66.667 0.00 0.00 42.27 3.51
1065 1103 1.070786 GCGGTTCTTGTCCTGGTCA 59.929 57.895 0.00 0.00 0.00 4.02
1263 1301 1.168714 GGCGGTTCTTGAAGCTGAAT 58.831 50.000 10.24 0.00 0.00 2.57
1827 1868 2.282040 AACGGGTCGTCGTCCTCT 60.282 61.111 8.42 0.00 43.07 3.69
1998 2048 1.003233 GAGCACCTCCCACTTCCAC 60.003 63.158 0.00 0.00 0.00 4.02
2056 2106 2.281070 GACGGCCATGCGGATGAT 60.281 61.111 19.50 0.39 33.14 2.45
2243 2293 0.601558 GAGCACCTTGGTGACGTAGA 59.398 55.000 22.52 0.00 0.00 2.59
2610 2663 3.706373 TTCTCCTCCAGGTGCCGC 61.706 66.667 0.00 0.00 36.34 6.53
2627 2680 1.407936 CTGGTCGATGGAGATGGAGT 58.592 55.000 0.00 0.00 0.00 3.85
2695 2748 3.079960 GTAGCGGACGATCTTCATCAA 57.920 47.619 1.23 0.00 0.00 2.57
2907 2960 1.683385 TCGATCGATCTTGGCATGAGT 59.317 47.619 22.43 0.00 0.00 3.41
2911 2964 1.410517 AGTGTCGATCGATCTTGGCAT 59.589 47.619 22.50 4.45 0.00 4.40
2924 2977 1.080093 GCAACCGGATCAGTGTCGA 60.080 57.895 9.46 0.00 0.00 4.20
2925 2978 2.444624 CGCAACCGGATCAGTGTCG 61.445 63.158 9.46 2.86 0.00 4.35
2926 2979 0.669318 TTCGCAACCGGATCAGTGTC 60.669 55.000 9.46 0.00 34.56 3.67
2937 2990 2.258286 GGTGCACCATTCGCAACC 59.742 61.111 31.23 0.00 41.36 3.77
2951 3004 1.682740 TATGTGCCTGCATCATGGTG 58.317 50.000 0.10 0.10 0.00 4.17
2954 3007 3.682696 AGGTATATGTGCCTGCATCATG 58.317 45.455 0.00 0.00 39.19 3.07
3114 3173 4.069232 TTGAGCGTGAGGGCGAGG 62.069 66.667 0.00 0.00 38.18 4.63
3360 3419 2.833582 ATCCCGTCGACCTCGCAT 60.834 61.111 10.58 0.00 39.60 4.73
3590 3650 3.718210 GACGGCGTCTCCCATGTCC 62.718 68.421 31.15 2.27 0.00 4.02
3757 3817 4.690748 TGTCAAGGTAGCTGAAATTCGAAG 59.309 41.667 3.35 0.00 0.00 3.79
3803 3863 4.457496 AGCACGACCATGGAGCCG 62.457 66.667 21.47 19.83 0.00 5.52
4126 4186 5.173854 GCAACAAACATGTAGCTCAAAGTTC 59.826 40.000 0.00 0.00 31.38 3.01
4376 4441 6.517034 CGATGCGACGTTTTGAGTTAATAAAA 59.483 34.615 0.00 0.00 0.00 1.52
4383 4448 1.455786 CTCGATGCGACGTTTTGAGTT 59.544 47.619 0.00 0.00 34.70 3.01
4404 4469 1.329599 GAACTCTCGCGGTTGTTTTGT 59.670 47.619 6.13 0.00 0.00 2.83
4464 4530 6.778834 ATGTGTGAAGCATGATATTTTGGA 57.221 33.333 0.00 0.00 0.00 3.53
4487 4553 9.091784 CTGAATCATGTCGATTTTCTTCTAGAA 57.908 33.333 4.81 4.81 44.65 2.10
4492 4558 5.586243 TCCCTGAATCATGTCGATTTTCTTC 59.414 40.000 0.00 0.00 44.65 2.87
4628 4699 3.247173 CCGAGCACAATGAGCTTCTTATC 59.753 47.826 6.63 0.00 43.58 1.75
4630 4701 2.621338 CCGAGCACAATGAGCTTCTTA 58.379 47.619 6.63 0.00 43.58 2.10
4640 4711 2.749044 CAGCAGCCCGAGCACAAT 60.749 61.111 0.00 0.00 43.56 2.71
4724 4795 9.685276 AATACATCTCAATGAAACATTAGTCCA 57.315 29.630 0.00 0.00 36.67 4.02
4792 4863 4.286297 TCTTGACGGGTTTCATCAATCT 57.714 40.909 0.00 0.00 32.16 2.40
4827 4898 5.794687 TTGCTATTCATTACCAACACTCG 57.205 39.130 0.00 0.00 0.00 4.18
4894 4965 6.600882 AATCCATCCAATATTCTTCATGCC 57.399 37.500 0.00 0.00 0.00 4.40
4937 5008 7.002276 TCAATGATCTTGATGCATATCTTGGT 58.998 34.615 0.00 0.00 34.31 3.67
5001 5072 2.632377 TGATGCCTCGGAGTTCATTTC 58.368 47.619 4.02 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.