Multiple sequence alignment - TraesCS5B01G256200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G256200 | chr5B | 100.000 | 5395 | 0 | 0 | 1 | 5395 | 439055540 | 439060934 | 0.000000e+00 | 9963.0 |
1 | TraesCS5B01G256200 | chr5A | 91.897 | 4566 | 250 | 56 | 1 | 4477 | 472273577 | 472278111 | 0.000000e+00 | 6272.0 |
2 | TraesCS5B01G256200 | chr5A | 89.189 | 666 | 49 | 13 | 4523 | 5177 | 472278109 | 472278762 | 0.000000e+00 | 809.0 |
3 | TraesCS5B01G256200 | chr5D | 89.387 | 2120 | 140 | 39 | 3186 | 5267 | 369719493 | 369721565 | 0.000000e+00 | 2590.0 |
4 | TraesCS5B01G256200 | chr5D | 97.113 | 1039 | 27 | 3 | 815 | 1851 | 369715622 | 369716659 | 0.000000e+00 | 1749.0 |
5 | TraesCS5B01G256200 | chr5D | 97.143 | 700 | 16 | 2 | 2366 | 3064 | 369717397 | 369718093 | 0.000000e+00 | 1179.0 |
6 | TraesCS5B01G256200 | chr5D | 86.182 | 825 | 83 | 21 | 1 | 812 | 369714773 | 369715579 | 0.000000e+00 | 863.0 |
7 | TraesCS5B01G256200 | chr5D | 89.130 | 414 | 33 | 8 | 1853 | 2261 | 369716878 | 369717284 | 6.240000e-139 | 505.0 |
8 | TraesCS5B01G256200 | chr5D | 92.800 | 125 | 7 | 2 | 2212 | 2336 | 369717279 | 369717401 | 4.290000e-41 | 180.0 |
9 | TraesCS5B01G256200 | chr5D | 85.093 | 161 | 11 | 4 | 3060 | 3209 | 369718765 | 369718923 | 9.360000e-33 | 152.0 |
10 | TraesCS5B01G256200 | chr3B | 87.342 | 79 | 7 | 3 | 815 | 892 | 312138295 | 312138371 | 2.680000e-13 | 87.9 |
11 | TraesCS5B01G256200 | chr6A | 87.179 | 78 | 6 | 4 | 816 | 892 | 238930048 | 238929974 | 9.630000e-13 | 86.1 |
12 | TraesCS5B01G256200 | chr3A | 86.076 | 79 | 8 | 3 | 815 | 892 | 739054958 | 739055034 | 1.250000e-11 | 82.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G256200 | chr5B | 439055540 | 439060934 | 5394 | False | 9963.000000 | 9963 | 100.000000 | 1 | 5395 | 1 | chr5B.!!$F1 | 5394 |
1 | TraesCS5B01G256200 | chr5A | 472273577 | 472278762 | 5185 | False | 3540.500000 | 6272 | 90.543000 | 1 | 5177 | 2 | chr5A.!!$F1 | 5176 |
2 | TraesCS5B01G256200 | chr5D | 369714773 | 369721565 | 6792 | False | 1031.142857 | 2590 | 90.978286 | 1 | 5267 | 7 | chr5D.!!$F1 | 5266 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
446 | 453 | 0.237235 | GGAGCAGAGACGAGCGATAG | 59.763 | 60.0 | 0.00 | 0.00 | 35.48 | 2.08 | F |
1486 | 1547 | 0.832135 | TGGCAAGGTCGAGGAAGAGT | 60.832 | 55.0 | 0.00 | 0.00 | 0.00 | 3.24 | F |
2019 | 2302 | 1.404843 | TTTGTTGCAACTGTACCCCC | 58.595 | 50.0 | 28.61 | 0.95 | 0.00 | 5.40 | F |
2581 | 2906 | 0.818040 | AACTTGACTCAACCACCGCC | 60.818 | 55.0 | 0.00 | 0.00 | 0.00 | 6.13 | F |
3425 | 5046 | 0.537143 | AGTTGGCGGTGCTTTCATGA | 60.537 | 50.0 | 0.00 | 0.00 | 0.00 | 3.07 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2381 | 2705 | 0.036732 | AGCTGCAAATTGGTCGAGGA | 59.963 | 50.000 | 1.02 | 0.0 | 0.00 | 3.71 | R |
2382 | 2706 | 0.883833 | AAGCTGCAAATTGGTCGAGG | 59.116 | 50.000 | 1.02 | 0.0 | 0.00 | 4.63 | R |
3403 | 5024 | 1.282875 | GAAAGCACCGCCAACTGAC | 59.717 | 57.895 | 0.00 | 0.0 | 0.00 | 3.51 | R |
4306 | 5957 | 0.244450 | AAGTGCAAATCATGGCGTGG | 59.756 | 50.000 | 6.90 | 0.0 | 0.00 | 4.94 | R |
5303 | 6971 | 0.110147 | AGCTCAACGAAGAGACGACG | 60.110 | 55.000 | 11.94 | 0.0 | 37.87 | 5.12 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 5.647658 | TGACATGTTATCAATTGAGGTGACC | 59.352 | 40.000 | 14.54 | 0.00 | 0.00 | 4.02 |
41 | 42 | 7.888021 | TGTTATCAATTGAGGTGACCATAAAGT | 59.112 | 33.333 | 14.54 | 0.00 | 0.00 | 2.66 |
85 | 86 | 9.166126 | CAGACCACGTAGAAATTTTAAAAGAAC | 57.834 | 33.333 | 6.79 | 0.66 | 0.00 | 3.01 |
213 | 215 | 5.674525 | AGCAATTCTCACCATTCGATCTTA | 58.325 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
231 | 233 | 6.206243 | CGATCTTATTTTGGATTCATCTGGCT | 59.794 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
232 | 234 | 6.704289 | TCTTATTTTGGATTCATCTGGCTG | 57.296 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
301 | 307 | 3.843422 | ACCATTGAAGACCACCAATTGA | 58.157 | 40.909 | 7.12 | 0.00 | 31.25 | 2.57 |
307 | 313 | 0.482446 | AGACCACCAATTGAAGGCCA | 59.518 | 50.000 | 5.01 | 0.00 | 0.00 | 5.36 |
310 | 316 | 1.047002 | CCACCAATTGAAGGCCAACA | 58.953 | 50.000 | 5.01 | 0.65 | 37.63 | 3.33 |
352 | 359 | 3.802685 | CCTCAATCGTCGGATAAAACTCC | 59.197 | 47.826 | 0.00 | 0.00 | 31.01 | 3.85 |
364 | 371 | 7.494625 | GTCGGATAAAACTCCATTATCTTGTCA | 59.505 | 37.037 | 6.32 | 0.00 | 38.96 | 3.58 |
383 | 390 | 5.125356 | TGTCACAAGCATATCTACCCATTG | 58.875 | 41.667 | 0.00 | 0.00 | 0.00 | 2.82 |
424 | 431 | 8.818141 | TCACTTCTCAAAACACAATAGACTAG | 57.182 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
446 | 453 | 0.237235 | GGAGCAGAGACGAGCGATAG | 59.763 | 60.000 | 0.00 | 0.00 | 35.48 | 2.08 |
464 | 471 | 6.754209 | AGCGATAGAGTTACAAACTGATCAAG | 59.246 | 38.462 | 0.00 | 0.00 | 43.03 | 3.02 |
476 | 483 | 8.073467 | ACAAACTGATCAAGGAAAGGTTTAAA | 57.927 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
494 | 501 | 9.758651 | AGGTTTAAATTTGAAATTGTCCACTAC | 57.241 | 29.630 | 3.62 | 0.00 | 0.00 | 2.73 |
495 | 502 | 9.535878 | GGTTTAAATTTGAAATTGTCCACTACA | 57.464 | 29.630 | 3.62 | 0.00 | 35.88 | 2.74 |
535 | 542 | 5.090139 | TCACCTTCTTCTTCCTCTCATTCT | 58.910 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
539 | 546 | 4.066578 | TCTTCTTCCTCTCATTCTCCCA | 57.933 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
549 | 556 | 5.045012 | TCTCATTCTCCCAATTCCATCTG | 57.955 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
675 | 687 | 1.557269 | GCCCATCCGCTCTCCCATAT | 61.557 | 60.000 | 0.00 | 0.00 | 0.00 | 1.78 |
683 | 695 | 2.102420 | CCGCTCTCCCATATACACACAA | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
685 | 697 | 3.804325 | CGCTCTCCCATATACACACAAAG | 59.196 | 47.826 | 0.00 | 0.00 | 0.00 | 2.77 |
723 | 735 | 3.859961 | CGTAGCATGTTTGTCTCGATCTT | 59.140 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
734 | 746 | 6.471233 | TTGTCTCGATCTTGATAGTCCAAT | 57.529 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
774 | 786 | 3.119101 | ACTTATACTTCGAGCCCACACAG | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
848 | 902 | 9.851686 | ATATGTCAAAATTTAGAGTGGCATAGA | 57.148 | 29.630 | 16.05 | 2.19 | 40.71 | 1.98 |
1041 | 1101 | 2.639286 | CGCAAGGCTCGCAACTTT | 59.361 | 55.556 | 0.00 | 0.00 | 0.00 | 2.66 |
1164 | 1224 | 0.966370 | ACGAAGACCCTTCCCTCTCG | 60.966 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1206 | 1266 | 1.997874 | CCCTTCCTCCACCTCTGGG | 60.998 | 68.421 | 0.00 | 0.00 | 38.25 | 4.45 |
1287 | 1347 | 1.404843 | ACTACCTTCTCCATCTCCGC | 58.595 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
1397 | 1458 | 2.978156 | TCTCAAAAGCCCATCCAAGT | 57.022 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1486 | 1547 | 0.832135 | TGGCAAGGTCGAGGAAGAGT | 60.832 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1623 | 1684 | 4.383770 | GGTTTGGAGGAGGATTTCGTCATA | 60.384 | 45.833 | 3.03 | 0.00 | 41.42 | 2.15 |
1663 | 1724 | 4.110072 | AGGGGATGATATGGAGGATGAAG | 58.890 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
1803 | 1864 | 8.125978 | TGGTGAGCTTCTTTCATTTGATAATT | 57.874 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
1807 | 1868 | 7.972277 | TGAGCTTCTTTCATTTGATAATTCTGC | 59.028 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
1832 | 1893 | 3.316071 | TTGCTTTGCAATATGGTGTGG | 57.684 | 42.857 | 0.00 | 0.00 | 43.99 | 4.17 |
1851 | 2129 | 6.695713 | GGTGTGGAAAAACTGTTATCTTGTTC | 59.304 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1999 | 2282 | 2.301870 | TGTCAGCGTTGAATACTTCCCT | 59.698 | 45.455 | 2.60 | 0.00 | 34.49 | 4.20 |
2019 | 2302 | 1.404843 | TTTGTTGCAACTGTACCCCC | 58.595 | 50.000 | 28.61 | 0.95 | 0.00 | 5.40 |
2094 | 2379 | 3.435327 | TGGTATAACAGTCTTTGCTTGCG | 59.565 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
2109 | 2394 | 2.721090 | GCTTGCGAGTTTGTCATTTGTC | 59.279 | 45.455 | 2.14 | 0.00 | 0.00 | 3.18 |
2132 | 2417 | 9.567776 | TGTCTTTAACCATTCAGTAGATTCAAA | 57.432 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2134 | 2419 | 9.793259 | TCTTTAACCATTCAGTAGATTCAAAGT | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2157 | 2442 | 8.095452 | AGTGTTCTCCATATAGAAGATTTGGT | 57.905 | 34.615 | 0.00 | 0.00 | 36.19 | 3.67 |
2202 | 2487 | 5.886474 | CCTGTTGTAGAGTAGGACTATGTGA | 59.114 | 44.000 | 0.00 | 0.00 | 31.91 | 3.58 |
2215 | 2500 | 9.148104 | GTAGGACTATGTGAAAAGTTAAATCGT | 57.852 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
2216 | 2501 | 8.617290 | AGGACTATGTGAAAAGTTAAATCGTT | 57.383 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
2217 | 2502 | 8.504005 | AGGACTATGTGAAAAGTTAAATCGTTG | 58.496 | 33.333 | 0.00 | 0.00 | 0.00 | 4.10 |
2218 | 2503 | 7.749126 | GGACTATGTGAAAAGTTAAATCGTTGG | 59.251 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
2219 | 2504 | 7.081976 | ACTATGTGAAAAGTTAAATCGTTGGC | 58.918 | 34.615 | 0.00 | 0.00 | 0.00 | 4.52 |
2220 | 2505 | 4.612943 | TGTGAAAAGTTAAATCGTTGGCC | 58.387 | 39.130 | 0.00 | 0.00 | 0.00 | 5.36 |
2221 | 2506 | 3.666797 | GTGAAAAGTTAAATCGTTGGCCG | 59.333 | 43.478 | 0.00 | 0.00 | 38.13 | 6.13 |
2281 | 2605 | 6.430925 | TCTTGTATTGCATGTATCATTAGCCC | 59.569 | 38.462 | 0.00 | 0.00 | 0.00 | 5.19 |
2300 | 2624 | 3.430453 | CCCCCTGCTGTTTCTGAAATTA | 58.570 | 45.455 | 6.06 | 0.00 | 0.00 | 1.40 |
2302 | 2626 | 4.283212 | CCCCCTGCTGTTTCTGAAATTAAA | 59.717 | 41.667 | 6.06 | 0.00 | 0.00 | 1.52 |
2312 | 2636 | 9.912634 | CTGTTTCTGAAATTAAAGCTGGAAATA | 57.087 | 29.630 | 6.06 | 0.00 | 0.00 | 1.40 |
2337 | 2661 | 4.518970 | TGTTCTATGCTTTGAACCTTCACC | 59.481 | 41.667 | 19.10 | 0.04 | 41.10 | 4.02 |
2341 | 2665 | 5.833131 | TCTATGCTTTGAACCTTCACCTTTT | 59.167 | 36.000 | 0.00 | 0.00 | 36.83 | 2.27 |
2343 | 2667 | 5.923733 | TGCTTTGAACCTTCACCTTTTTA | 57.076 | 34.783 | 0.00 | 0.00 | 36.83 | 1.52 |
2346 | 2670 | 7.334858 | TGCTTTGAACCTTCACCTTTTTATTT | 58.665 | 30.769 | 0.00 | 0.00 | 36.83 | 1.40 |
2348 | 2672 | 9.320352 | GCTTTGAACCTTCACCTTTTTATTTTA | 57.680 | 29.630 | 0.00 | 0.00 | 36.83 | 1.52 |
2381 | 2705 | 9.732130 | AAAAGCTATACTTCAGATCTTGACTTT | 57.268 | 29.630 | 0.00 | 0.00 | 37.75 | 2.66 |
2382 | 2706 | 8.940768 | AAGCTATACTTCAGATCTTGACTTTC | 57.059 | 34.615 | 0.00 | 0.00 | 34.94 | 2.62 |
2489 | 2814 | 4.583489 | TCCCGTCTGAGGTTATAGATGAAC | 59.417 | 45.833 | 0.00 | 0.00 | 32.87 | 3.18 |
2581 | 2906 | 0.818040 | AACTTGACTCAACCACCGCC | 60.818 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2614 | 2939 | 5.411977 | GGATGAATCTGCTAATGTGATCCAG | 59.588 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2734 | 3059 | 3.213506 | CTGTGAGACCATTGTTTCCACA | 58.786 | 45.455 | 0.00 | 0.00 | 31.92 | 4.17 |
2809 | 3134 | 6.465439 | AGAAATCGTCTTCCCAAAGTTTTT | 57.535 | 33.333 | 0.00 | 0.00 | 29.66 | 1.94 |
3069 | 4070 | 5.404096 | TGATCATGTGTTCATTTGTGATGC | 58.596 | 37.500 | 0.00 | 0.00 | 31.15 | 3.91 |
3094 | 4095 | 7.702348 | GCAAAAATGGGAGAACATGTTAGTATC | 59.298 | 37.037 | 11.95 | 7.46 | 28.40 | 2.24 |
3139 | 4151 | 4.243270 | GACCAGCTACACGTGATAAACTT | 58.757 | 43.478 | 25.01 | 0.00 | 0.00 | 2.66 |
3147 | 4159 | 4.813027 | ACACGTGATAAACTTATGTCGGT | 58.187 | 39.130 | 25.01 | 0.00 | 0.00 | 4.69 |
3162 | 4174 | 5.703730 | ATGTCGGTTTAGGGGAGATTTAA | 57.296 | 39.130 | 0.00 | 0.00 | 0.00 | 1.52 |
3192 | 4795 | 6.441088 | AGTCTCTGAAATTAAACCTGGACT | 57.559 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
3200 | 4803 | 9.410556 | CTGAAATTAAACCTGGACTGTTAATTG | 57.589 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
3202 | 4805 | 9.758651 | GAAATTAAACCTGGACTGTTAATTGTT | 57.241 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
3207 | 4810 | 6.308371 | ACCTGGACTGTTAATTGTTTTACG | 57.692 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
3305 | 4910 | 7.277981 | CACAAAACCTATACACTGATGGACTAC | 59.722 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
3336 | 4941 | 6.211184 | TGTCAAGCATTACCAAATTCCAATCT | 59.789 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
3338 | 4943 | 8.250332 | GTCAAGCATTACCAAATTCCAATCTTA | 58.750 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
3339 | 4944 | 8.469200 | TCAAGCATTACCAAATTCCAATCTTAG | 58.531 | 33.333 | 0.00 | 0.00 | 0.00 | 2.18 |
3340 | 4945 | 7.961326 | AGCATTACCAAATTCCAATCTTAGT | 57.039 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3342 | 4947 | 9.125026 | AGCATTACCAAATTCCAATCTTAGTAG | 57.875 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3343 | 4948 | 8.352942 | GCATTACCAAATTCCAATCTTAGTAGG | 58.647 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
3345 | 4950 | 6.652205 | ACCAAATTCCAATCTTAGTAGGGA | 57.348 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
3346 | 4951 | 6.424032 | ACCAAATTCCAATCTTAGTAGGGAC | 58.576 | 40.000 | 0.00 | 0.00 | 0.00 | 4.46 |
3364 | 4985 | 3.304928 | GGGACTGTCATGTTTCTTGCTTG | 60.305 | 47.826 | 10.38 | 0.00 | 0.00 | 4.01 |
3370 | 4991 | 7.141363 | ACTGTCATGTTTCTTGCTTGTAATTC | 58.859 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
3380 | 5001 | 5.474532 | TCTTGCTTGTAATTCTGAACTGCAT | 59.525 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
3381 | 5002 | 5.710513 | TGCTTGTAATTCTGAACTGCATT | 57.289 | 34.783 | 0.00 | 0.00 | 0.00 | 3.56 |
3382 | 5003 | 5.463286 | TGCTTGTAATTCTGAACTGCATTG | 58.537 | 37.500 | 0.00 | 0.00 | 0.00 | 2.82 |
3383 | 5004 | 4.325472 | GCTTGTAATTCTGAACTGCATTGC | 59.675 | 41.667 | 0.46 | 0.46 | 0.00 | 3.56 |
3384 | 5005 | 5.450592 | TTGTAATTCTGAACTGCATTGCA | 57.549 | 34.783 | 11.50 | 11.50 | 36.92 | 4.08 |
3388 | 5009 | 4.644103 | ATTCTGAACTGCATTGCATACC | 57.356 | 40.909 | 12.53 | 4.73 | 38.13 | 2.73 |
3425 | 5046 | 0.537143 | AGTTGGCGGTGCTTTCATGA | 60.537 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3439 | 5060 | 6.867816 | GTGCTTTCATGATTGGTTGTTAATGA | 59.132 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3496 | 5117 | 8.883954 | TTATCTTCTGCAACTGATTGAGATAG | 57.116 | 34.615 | 0.00 | 0.00 | 38.15 | 2.08 |
3787 | 5408 | 5.886474 | AGGAGTACTCTTTGATCGACATGTA | 59.114 | 40.000 | 21.88 | 0.00 | 0.00 | 2.29 |
4047 | 5693 | 7.466804 | TCCTAACATTTAATCTCCAACCAGTT | 58.533 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
4148 | 5796 | 9.442047 | TCTGAAGGTCTCAAGAAAGATAAAATC | 57.558 | 33.333 | 0.00 | 0.00 | 32.17 | 2.17 |
4278 | 5929 | 6.761731 | TTGAACCAAGAAATATTTGTTGCG | 57.238 | 33.333 | 25.25 | 20.89 | 39.34 | 4.85 |
4281 | 5932 | 4.555262 | ACCAAGAAATATTTGTTGCGTGG | 58.445 | 39.130 | 25.25 | 19.42 | 39.34 | 4.94 |
4306 | 5957 | 7.653311 | GGCCCAAAATGATTAGTATGATTCAAC | 59.347 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
4307 | 5958 | 7.653311 | GCCCAAAATGATTAGTATGATTCAACC | 59.347 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
4316 | 5967 | 2.127271 | ATGATTCAACCACGCCATGA | 57.873 | 45.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4334 | 5985 | 5.484715 | CCATGATTTGCACTTGATTTTCCT | 58.515 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
4335 | 5986 | 5.350365 | CCATGATTTGCACTTGATTTTCCTG | 59.650 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4336 | 5987 | 4.885413 | TGATTTGCACTTGATTTTCCTGG | 58.115 | 39.130 | 0.00 | 0.00 | 0.00 | 4.45 |
4349 | 6000 | 6.480763 | TGATTTTCCTGGCACTAAGTTGATA | 58.519 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
4414 | 6065 | 9.546428 | CAGATAATTGTCCTGTGTCATATGTAA | 57.454 | 33.333 | 1.90 | 0.00 | 0.00 | 2.41 |
4416 | 6067 | 6.662414 | AATTGTCCTGTGTCATATGTAACG | 57.338 | 37.500 | 1.90 | 0.00 | 0.00 | 3.18 |
4561 | 6218 | 2.941720 | GACTGGAGGCAGTGAATGATTC | 59.058 | 50.000 | 0.00 | 0.00 | 35.23 | 2.52 |
4586 | 6243 | 4.321974 | GCTTGGCATTACCTTTTTACTGCT | 60.322 | 41.667 | 0.00 | 0.00 | 40.22 | 4.24 |
4654 | 6311 | 6.767524 | TCAAATGGGCGAATAGTTTTGTAT | 57.232 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4657 | 6314 | 2.685897 | TGGGCGAATAGTTTTGTATGCC | 59.314 | 45.455 | 0.00 | 0.00 | 40.48 | 4.40 |
4661 | 6318 | 4.318546 | GGCGAATAGTTTTGTATGCCTACG | 60.319 | 45.833 | 0.00 | 0.00 | 38.22 | 3.51 |
4690 | 6347 | 1.543429 | CGCAGGATCCAAATACCTCCC | 60.543 | 57.143 | 15.82 | 0.00 | 31.06 | 4.30 |
4703 | 6360 | 1.783071 | ACCTCCCGAAATCCTCTCTC | 58.217 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
4746 | 6403 | 6.884295 | AGATTTATCAATTCCAGGTGTTCGAA | 59.116 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
4748 | 6405 | 2.500229 | TCAATTCCAGGTGTTCGAACC | 58.500 | 47.619 | 24.78 | 12.09 | 40.85 | 3.62 |
4757 | 6414 | 2.099098 | AGGTGTTCGAACCAAAGCAAAG | 59.901 | 45.455 | 24.78 | 0.00 | 43.20 | 2.77 |
4773 | 6430 | 1.946768 | CAAAGTGCTCTTTCCGGTTGA | 59.053 | 47.619 | 10.72 | 0.00 | 41.31 | 3.18 |
4776 | 6433 | 1.347707 | AGTGCTCTTTCCGGTTGATGA | 59.652 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
4856 | 6513 | 1.866601 | CGGCAATATGACAATCGAGCA | 59.133 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
4882 | 6540 | 3.187842 | GTGGTCCTGGTATTTTGTCGTTC | 59.812 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
4895 | 6553 | 0.242825 | GTCGTTCGGGATCTGTGACA | 59.757 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
4897 | 6555 | 0.243907 | CGTTCGGGATCTGTGACAGT | 59.756 | 55.000 | 12.93 | 0.00 | 32.61 | 3.55 |
5018 | 6685 | 4.100808 | AGCATCTCTACCAGATTCCTCAAC | 59.899 | 45.833 | 0.00 | 0.00 | 40.20 | 3.18 |
5028 | 6695 | 7.074653 | ACCAGATTCCTCAACAGTAAAAGTA | 57.925 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5029 | 6696 | 7.690256 | ACCAGATTCCTCAACAGTAAAAGTAT | 58.310 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
5030 | 6697 | 8.822805 | ACCAGATTCCTCAACAGTAAAAGTATA | 58.177 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
5031 | 6698 | 9.838339 | CCAGATTCCTCAACAGTAAAAGTATAT | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
5036 | 6703 | 9.653287 | TTCCTCAACAGTAAAAGTATATCTGTG | 57.347 | 33.333 | 0.00 | 0.00 | 38.97 | 3.66 |
5038 | 6705 | 7.011482 | CCTCAACAGTAAAAGTATATCTGTGGC | 59.989 | 40.741 | 0.00 | 0.00 | 38.97 | 5.01 |
5039 | 6706 | 7.390823 | TCAACAGTAAAAGTATATCTGTGGCA | 58.609 | 34.615 | 0.00 | 0.00 | 38.97 | 4.92 |
5044 | 6711 | 9.507280 | CAGTAAAAGTATATCTGTGGCAAATTG | 57.493 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
5048 | 6715 | 9.777297 | AAAAGTATATCTGTGGCAAATTGTTTT | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 2.43 |
5049 | 6716 | 8.986477 | AAGTATATCTGTGGCAAATTGTTTTC | 57.014 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
5051 | 6718 | 8.246180 | AGTATATCTGTGGCAAATTGTTTTCTG | 58.754 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
5052 | 6719 | 4.734398 | TCTGTGGCAAATTGTTTTCTGT | 57.266 | 36.364 | 0.00 | 0.00 | 0.00 | 3.41 |
5053 | 6720 | 5.083533 | TCTGTGGCAAATTGTTTTCTGTT | 57.916 | 34.783 | 0.00 | 0.00 | 0.00 | 3.16 |
5054 | 6721 | 5.486526 | TCTGTGGCAAATTGTTTTCTGTTT | 58.513 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
5055 | 6722 | 5.936956 | TCTGTGGCAAATTGTTTTCTGTTTT | 59.063 | 32.000 | 0.00 | 0.00 | 0.00 | 2.43 |
5056 | 6723 | 6.429385 | TCTGTGGCAAATTGTTTTCTGTTTTT | 59.571 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
5178 | 6845 | 4.024302 | CGTTCAGGTTTACCAGAAAACTCC | 60.024 | 45.833 | 8.14 | 0.00 | 42.09 | 3.85 |
5179 | 6846 | 5.131067 | GTTCAGGTTTACCAGAAAACTCCT | 58.869 | 41.667 | 8.14 | 0.00 | 42.09 | 3.69 |
5180 | 6847 | 6.293698 | GTTCAGGTTTACCAGAAAACTCCTA | 58.706 | 40.000 | 8.14 | 0.00 | 42.09 | 2.94 |
5182 | 6849 | 6.472887 | TCAGGTTTACCAGAAAACTCCTATG | 58.527 | 40.000 | 1.13 | 0.00 | 38.98 | 2.23 |
5258 | 6926 | 4.280677 | CCAGACAAATAAGGCACCTGAAAA | 59.719 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
5259 | 6927 | 5.221422 | CCAGACAAATAAGGCACCTGAAAAA | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
5267 | 6935 | 2.164338 | GGCACCTGAAAAATCGGGTTA | 58.836 | 47.619 | 6.60 | 0.00 | 46.59 | 2.85 |
5268 | 6936 | 2.163613 | GGCACCTGAAAAATCGGGTTAG | 59.836 | 50.000 | 6.60 | 0.00 | 46.59 | 2.34 |
5269 | 6937 | 3.078837 | GCACCTGAAAAATCGGGTTAGA | 58.921 | 45.455 | 6.60 | 0.00 | 46.59 | 2.10 |
5270 | 6938 | 3.127030 | GCACCTGAAAAATCGGGTTAGAG | 59.873 | 47.826 | 6.60 | 0.00 | 46.59 | 2.43 |
5271 | 6939 | 3.689649 | CACCTGAAAAATCGGGTTAGAGG | 59.310 | 47.826 | 6.60 | 0.00 | 46.59 | 3.69 |
5272 | 6940 | 3.585732 | ACCTGAAAAATCGGGTTAGAGGA | 59.414 | 43.478 | 3.48 | 0.00 | 46.59 | 3.71 |
5273 | 6941 | 4.042435 | ACCTGAAAAATCGGGTTAGAGGAA | 59.958 | 41.667 | 3.48 | 0.00 | 46.59 | 3.36 |
5274 | 6942 | 4.636206 | CCTGAAAAATCGGGTTAGAGGAAG | 59.364 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
5275 | 6943 | 5.488341 | CTGAAAAATCGGGTTAGAGGAAGA | 58.512 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
5276 | 6944 | 5.871834 | TGAAAAATCGGGTTAGAGGAAGAA | 58.128 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
5277 | 6945 | 5.938125 | TGAAAAATCGGGTTAGAGGAAGAAG | 59.062 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
5278 | 6946 | 5.757099 | AAAATCGGGTTAGAGGAAGAAGA | 57.243 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
5279 | 6947 | 5.757099 | AAATCGGGTTAGAGGAAGAAGAA | 57.243 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
5280 | 6948 | 4.739587 | ATCGGGTTAGAGGAAGAAGAAC | 57.260 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
5281 | 6949 | 2.490903 | TCGGGTTAGAGGAAGAAGAACG | 59.509 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
5282 | 6950 | 2.490903 | CGGGTTAGAGGAAGAAGAACGA | 59.509 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5283 | 6951 | 3.427773 | CGGGTTAGAGGAAGAAGAACGAG | 60.428 | 52.174 | 0.00 | 0.00 | 0.00 | 4.18 |
5284 | 6952 | 3.119065 | GGGTTAGAGGAAGAAGAACGAGG | 60.119 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
5285 | 6953 | 3.762823 | GGTTAGAGGAAGAAGAACGAGGA | 59.237 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
5286 | 6954 | 4.380761 | GGTTAGAGGAAGAAGAACGAGGAC | 60.381 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5287 | 6955 | 2.172679 | AGAGGAAGAAGAACGAGGACC | 58.827 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
5288 | 6956 | 1.893801 | GAGGAAGAAGAACGAGGACCA | 59.106 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
5289 | 6957 | 2.498078 | GAGGAAGAAGAACGAGGACCAT | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
5290 | 6958 | 2.234908 | AGGAAGAAGAACGAGGACCATG | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
5291 | 6959 | 2.028020 | GGAAGAAGAACGAGGACCATGT | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
5292 | 6960 | 3.254892 | GAAGAAGAACGAGGACCATGTC | 58.745 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5302 | 6970 | 3.393472 | GACCATGTCCAGATGGAGC | 57.607 | 57.895 | 9.67 | 0.00 | 46.49 | 4.70 |
5303 | 6971 | 0.179034 | GACCATGTCCAGATGGAGCC | 60.179 | 60.000 | 9.67 | 0.00 | 46.49 | 4.70 |
5304 | 6972 | 1.227764 | CCATGTCCAGATGGAGCCG | 60.228 | 63.158 | 0.65 | 0.00 | 46.49 | 5.52 |
5305 | 6973 | 1.524002 | CATGTCCAGATGGAGCCGT | 59.476 | 57.895 | 0.65 | 0.00 | 46.49 | 5.68 |
5306 | 6974 | 0.531532 | CATGTCCAGATGGAGCCGTC | 60.532 | 60.000 | 0.65 | 0.32 | 46.49 | 4.79 |
5307 | 6975 | 2.021068 | ATGTCCAGATGGAGCCGTCG | 62.021 | 60.000 | 0.65 | 0.00 | 46.49 | 5.12 |
5308 | 6976 | 2.362503 | TCCAGATGGAGCCGTCGT | 60.363 | 61.111 | 0.00 | 0.00 | 39.78 | 4.34 |
5309 | 6977 | 2.105128 | CCAGATGGAGCCGTCGTC | 59.895 | 66.667 | 3.22 | 0.00 | 37.08 | 4.20 |
5310 | 6978 | 2.418910 | CCAGATGGAGCCGTCGTCT | 61.419 | 63.158 | 3.22 | 0.00 | 37.08 | 4.18 |
5311 | 6979 | 1.064946 | CAGATGGAGCCGTCGTCTC | 59.935 | 63.158 | 0.00 | 0.00 | 37.08 | 3.36 |
5312 | 6980 | 1.077357 | AGATGGAGCCGTCGTCTCT | 60.077 | 57.895 | 2.99 | 0.00 | 37.08 | 3.10 |
5313 | 6981 | 0.681564 | AGATGGAGCCGTCGTCTCTT | 60.682 | 55.000 | 2.99 | 0.00 | 37.08 | 2.85 |
5314 | 6982 | 0.248702 | GATGGAGCCGTCGTCTCTTC | 60.249 | 60.000 | 2.99 | 0.00 | 0.00 | 2.87 |
5315 | 6983 | 1.994507 | ATGGAGCCGTCGTCTCTTCG | 61.995 | 60.000 | 2.99 | 0.00 | 0.00 | 3.79 |
5316 | 6984 | 2.688794 | GGAGCCGTCGTCTCTTCGT | 61.689 | 63.158 | 2.99 | 0.00 | 0.00 | 3.85 |
5317 | 6985 | 1.209640 | GAGCCGTCGTCTCTTCGTT | 59.790 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
5318 | 6986 | 1.066114 | GAGCCGTCGTCTCTTCGTTG | 61.066 | 60.000 | 0.00 | 0.00 | 0.00 | 4.10 |
5319 | 6987 | 1.081641 | GCCGTCGTCTCTTCGTTGA | 60.082 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
5320 | 6988 | 1.066114 | GCCGTCGTCTCTTCGTTGAG | 61.066 | 60.000 | 0.00 | 1.98 | 35.52 | 3.02 |
5321 | 6989 | 1.066114 | CCGTCGTCTCTTCGTTGAGC | 61.066 | 60.000 | 0.00 | 0.00 | 34.29 | 4.26 |
5322 | 6990 | 0.110147 | CGTCGTCTCTTCGTTGAGCT | 60.110 | 55.000 | 0.00 | 0.00 | 34.29 | 4.09 |
5323 | 6991 | 1.663445 | CGTCGTCTCTTCGTTGAGCTT | 60.663 | 52.381 | 0.00 | 0.00 | 34.29 | 3.74 |
5324 | 6992 | 2.412455 | CGTCGTCTCTTCGTTGAGCTTA | 60.412 | 50.000 | 0.00 | 0.00 | 34.29 | 3.09 |
5325 | 6993 | 3.728268 | CGTCGTCTCTTCGTTGAGCTTAT | 60.728 | 47.826 | 0.00 | 0.00 | 34.29 | 1.73 |
5326 | 6994 | 3.787105 | GTCGTCTCTTCGTTGAGCTTATC | 59.213 | 47.826 | 0.00 | 0.00 | 34.29 | 1.75 |
5327 | 6995 | 3.109619 | CGTCTCTTCGTTGAGCTTATCC | 58.890 | 50.000 | 0.00 | 0.00 | 34.29 | 2.59 |
5328 | 6996 | 3.181495 | CGTCTCTTCGTTGAGCTTATCCT | 60.181 | 47.826 | 0.00 | 0.00 | 34.29 | 3.24 |
5329 | 6997 | 4.356289 | GTCTCTTCGTTGAGCTTATCCTC | 58.644 | 47.826 | 0.00 | 0.00 | 34.29 | 3.71 |
5330 | 6998 | 4.097286 | GTCTCTTCGTTGAGCTTATCCTCT | 59.903 | 45.833 | 0.00 | 0.00 | 34.29 | 3.69 |
5331 | 6999 | 4.336993 | TCTCTTCGTTGAGCTTATCCTCTC | 59.663 | 45.833 | 0.00 | 0.00 | 34.29 | 3.20 |
5332 | 7000 | 3.065510 | TCTTCGTTGAGCTTATCCTCTCG | 59.934 | 47.826 | 0.00 | 0.00 | 34.22 | 4.04 |
5333 | 7001 | 2.366533 | TCGTTGAGCTTATCCTCTCGT | 58.633 | 47.619 | 0.00 | 0.00 | 34.40 | 4.18 |
5334 | 7002 | 2.753452 | TCGTTGAGCTTATCCTCTCGTT | 59.247 | 45.455 | 0.00 | 0.00 | 34.40 | 3.85 |
5335 | 7003 | 3.943381 | TCGTTGAGCTTATCCTCTCGTTA | 59.057 | 43.478 | 0.00 | 0.00 | 34.40 | 3.18 |
5336 | 7004 | 4.036352 | CGTTGAGCTTATCCTCTCGTTAC | 58.964 | 47.826 | 0.00 | 0.00 | 33.02 | 2.50 |
5337 | 7005 | 4.361420 | GTTGAGCTTATCCTCTCGTTACC | 58.639 | 47.826 | 0.00 | 0.00 | 33.02 | 2.85 |
5338 | 7006 | 3.899726 | TGAGCTTATCCTCTCGTTACCT | 58.100 | 45.455 | 0.00 | 0.00 | 33.02 | 3.08 |
5339 | 7007 | 5.045012 | TGAGCTTATCCTCTCGTTACCTA | 57.955 | 43.478 | 0.00 | 0.00 | 33.02 | 3.08 |
5340 | 7008 | 5.064558 | TGAGCTTATCCTCTCGTTACCTAG | 58.935 | 45.833 | 0.00 | 0.00 | 33.02 | 3.02 |
5341 | 7009 | 5.051409 | AGCTTATCCTCTCGTTACCTAGT | 57.949 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
5342 | 7010 | 5.447757 | AGCTTATCCTCTCGTTACCTAGTT | 58.552 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
5343 | 7011 | 5.892686 | AGCTTATCCTCTCGTTACCTAGTTT | 59.107 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5344 | 7012 | 5.978322 | GCTTATCCTCTCGTTACCTAGTTTG | 59.022 | 44.000 | 0.00 | 0.00 | 0.00 | 2.93 |
5345 | 7013 | 3.863142 | TCCTCTCGTTACCTAGTTTGC | 57.137 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
5346 | 7014 | 2.163010 | TCCTCTCGTTACCTAGTTTGCG | 59.837 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5347 | 7015 | 2.163010 | CCTCTCGTTACCTAGTTTGCGA | 59.837 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
5348 | 7016 | 3.169733 | CTCTCGTTACCTAGTTTGCGAC | 58.830 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
5349 | 7017 | 1.909532 | CTCGTTACCTAGTTTGCGACG | 59.090 | 52.381 | 0.00 | 0.00 | 0.00 | 5.12 |
5350 | 7018 | 1.266718 | TCGTTACCTAGTTTGCGACGT | 59.733 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
5351 | 7019 | 1.384409 | CGTTACCTAGTTTGCGACGTG | 59.616 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
5352 | 7020 | 2.664916 | GTTACCTAGTTTGCGACGTGA | 58.335 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
5353 | 7021 | 2.336554 | TACCTAGTTTGCGACGTGAC | 57.663 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5354 | 7022 | 0.672342 | ACCTAGTTTGCGACGTGACT | 59.328 | 50.000 | 0.00 | 1.09 | 0.00 | 3.41 |
5355 | 7023 | 1.068127 | ACCTAGTTTGCGACGTGACTT | 59.932 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
5356 | 7024 | 2.132762 | CCTAGTTTGCGACGTGACTTT | 58.867 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
5357 | 7025 | 2.155155 | CCTAGTTTGCGACGTGACTTTC | 59.845 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
5358 | 7026 | 0.935196 | AGTTTGCGACGTGACTTTCC | 59.065 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
5359 | 7027 | 0.653636 | GTTTGCGACGTGACTTTCCA | 59.346 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
5360 | 7028 | 0.653636 | TTTGCGACGTGACTTTCCAC | 59.346 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
5361 | 7029 | 1.155424 | TTGCGACGTGACTTTCCACC | 61.155 | 55.000 | 0.00 | 0.00 | 33.67 | 4.61 |
5362 | 7030 | 1.300697 | GCGACGTGACTTTCCACCT | 60.301 | 57.895 | 0.00 | 0.00 | 33.67 | 4.00 |
5363 | 7031 | 1.282930 | GCGACGTGACTTTCCACCTC | 61.283 | 60.000 | 0.00 | 0.00 | 33.67 | 3.85 |
5364 | 7032 | 0.666577 | CGACGTGACTTTCCACCTCC | 60.667 | 60.000 | 0.00 | 0.00 | 33.67 | 4.30 |
5365 | 7033 | 0.391597 | GACGTGACTTTCCACCTCCA | 59.608 | 55.000 | 0.00 | 0.00 | 33.67 | 3.86 |
5366 | 7034 | 0.834612 | ACGTGACTTTCCACCTCCAA | 59.165 | 50.000 | 0.00 | 0.00 | 33.67 | 3.53 |
5367 | 7035 | 1.420138 | ACGTGACTTTCCACCTCCAAT | 59.580 | 47.619 | 0.00 | 0.00 | 33.67 | 3.16 |
5368 | 7036 | 1.806542 | CGTGACTTTCCACCTCCAATG | 59.193 | 52.381 | 0.00 | 0.00 | 33.67 | 2.82 |
5369 | 7037 | 2.162681 | GTGACTTTCCACCTCCAATGG | 58.837 | 52.381 | 0.00 | 0.00 | 38.71 | 3.16 |
5370 | 7038 | 2.061848 | TGACTTTCCACCTCCAATGGA | 58.938 | 47.619 | 0.48 | 0.48 | 44.74 | 3.41 |
5374 | 7042 | 3.670105 | TCCACCTCCAATGGAAAGC | 57.330 | 52.632 | 2.61 | 0.00 | 43.43 | 3.51 |
5375 | 7043 | 1.075601 | TCCACCTCCAATGGAAAGCT | 58.924 | 50.000 | 2.61 | 0.00 | 43.43 | 3.74 |
5376 | 7044 | 1.428912 | TCCACCTCCAATGGAAAGCTT | 59.571 | 47.619 | 2.61 | 0.00 | 43.43 | 3.74 |
5377 | 7045 | 2.158325 | TCCACCTCCAATGGAAAGCTTT | 60.158 | 45.455 | 12.53 | 12.53 | 43.43 | 3.51 |
5378 | 7046 | 2.028748 | CCACCTCCAATGGAAAGCTTTG | 60.029 | 50.000 | 18.30 | 1.74 | 39.87 | 2.77 |
5379 | 7047 | 2.028748 | CACCTCCAATGGAAAGCTTTGG | 60.029 | 50.000 | 18.30 | 12.26 | 41.04 | 3.28 |
5380 | 7048 | 1.066645 | CCTCCAATGGAAAGCTTTGGC | 60.067 | 52.381 | 18.30 | 2.50 | 39.79 | 4.52 |
5381 | 7049 | 0.975887 | TCCAATGGAAAGCTTTGGCC | 59.024 | 50.000 | 18.30 | 13.16 | 39.79 | 5.36 |
5382 | 7050 | 0.390209 | CCAATGGAAAGCTTTGGCCG | 60.390 | 55.000 | 18.30 | 0.90 | 39.73 | 6.13 |
5383 | 7051 | 1.015607 | CAATGGAAAGCTTTGGCCGC | 61.016 | 55.000 | 18.30 | 0.85 | 39.73 | 6.53 |
5384 | 7052 | 2.171209 | AATGGAAAGCTTTGGCCGCC | 62.171 | 55.000 | 18.30 | 11.62 | 39.73 | 6.13 |
5385 | 7053 | 2.991540 | GGAAAGCTTTGGCCGCCT | 60.992 | 61.111 | 18.30 | 0.00 | 39.73 | 5.52 |
5386 | 7054 | 1.677633 | GGAAAGCTTTGGCCGCCTA | 60.678 | 57.895 | 18.30 | 0.00 | 39.73 | 3.93 |
5387 | 7055 | 1.506718 | GAAAGCTTTGGCCGCCTAC | 59.493 | 57.895 | 18.30 | 0.00 | 39.73 | 3.18 |
5388 | 7056 | 1.934220 | GAAAGCTTTGGCCGCCTACC | 61.934 | 60.000 | 18.30 | 0.00 | 39.73 | 3.18 |
5389 | 7057 | 2.426305 | AAAGCTTTGGCCGCCTACCT | 62.426 | 55.000 | 11.80 | 0.00 | 39.73 | 3.08 |
5390 | 7058 | 2.821679 | AAGCTTTGGCCGCCTACCTC | 62.822 | 60.000 | 11.61 | 0.00 | 39.73 | 3.85 |
5391 | 7059 | 2.124695 | CTTTGGCCGCCTACCTCC | 60.125 | 66.667 | 11.61 | 0.00 | 0.00 | 4.30 |
5392 | 7060 | 4.090588 | TTTGGCCGCCTACCTCCG | 62.091 | 66.667 | 11.61 | 0.00 | 0.00 | 4.63 |
5394 | 7062 | 3.961225 | TTGGCCGCCTACCTCCGTA | 62.961 | 63.158 | 11.61 | 0.00 | 0.00 | 4.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 5.261216 | ACCCCATTCACCAACTACTTTATG | 58.739 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
41 | 42 | 2.983192 | TCTGAACCCCATTCACCAACTA | 59.017 | 45.455 | 0.00 | 0.00 | 42.62 | 2.24 |
85 | 86 | 3.686241 | TCGCTTGTTTTCATCTCCATCAG | 59.314 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
213 | 215 | 4.091549 | ACACAGCCAGATGAATCCAAAAT | 58.908 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
231 | 233 | 5.940192 | ATTAAAAGTTCATCAGCGACACA | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 3.72 |
232 | 234 | 6.741358 | GGTAATTAAAAGTTCATCAGCGACAC | 59.259 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
269 | 272 | 7.365295 | GGTGGTCTTCAATGGTAGTTAGGAATA | 60.365 | 40.741 | 0.00 | 0.00 | 0.00 | 1.75 |
280 | 283 | 3.843422 | TCAATTGGTGGTCTTCAATGGT | 58.157 | 40.909 | 5.42 | 0.00 | 34.28 | 3.55 |
301 | 307 | 3.228188 | TCTCACTGAATTGTTGGCCTT | 57.772 | 42.857 | 3.32 | 0.00 | 0.00 | 4.35 |
307 | 313 | 4.946157 | GGACATCCATCTCACTGAATTGTT | 59.054 | 41.667 | 0.00 | 0.00 | 35.64 | 2.83 |
310 | 316 | 3.784763 | AGGGACATCCATCTCACTGAATT | 59.215 | 43.478 | 0.00 | 0.00 | 38.24 | 2.17 |
352 | 359 | 8.715998 | GGTAGATATGCTTGTGACAAGATAATG | 58.284 | 37.037 | 27.97 | 2.51 | 0.00 | 1.90 |
364 | 371 | 7.902920 | ATTTTCAATGGGTAGATATGCTTGT | 57.097 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
399 | 406 | 8.421784 | ACTAGTCTATTGTGTTTTGAGAAGTGA | 58.578 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
424 | 431 | 2.183046 | GCTCGTCTCTGCTCCCAC | 59.817 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
446 | 453 | 6.486993 | ACCTTTCCTTGATCAGTTTGTAACTC | 59.513 | 38.462 | 0.00 | 0.00 | 40.46 | 3.01 |
464 | 471 | 9.114952 | TGGACAATTTCAAATTTAAACCTTTCC | 57.885 | 29.630 | 0.00 | 0.00 | 0.00 | 3.13 |
504 | 511 | 0.321122 | AGAAGAAGGTGAAGCTGCGG | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
505 | 512 | 1.462670 | GAAGAAGAAGGTGAAGCTGCG | 59.537 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
535 | 542 | 5.985175 | TGGTTATACAGATGGAATTGGGA | 57.015 | 39.130 | 0.00 | 0.00 | 0.00 | 4.37 |
549 | 556 | 7.966204 | TGAGCGCTTTTCTTTAATTGGTTATAC | 59.034 | 33.333 | 13.26 | 0.00 | 0.00 | 1.47 |
564 | 571 | 2.556287 | CCCGTGTGAGCGCTTTTC | 59.444 | 61.111 | 13.26 | 5.89 | 0.00 | 2.29 |
675 | 687 | 2.605837 | TCAACGAGCCTTTGTGTGTA | 57.394 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
683 | 695 | 0.729116 | CGATTGCATCAACGAGCCTT | 59.271 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
685 | 697 | 1.258982 | CTACGATTGCATCAACGAGCC | 59.741 | 52.381 | 8.74 | 0.00 | 0.00 | 4.70 |
707 | 719 | 6.127338 | TGGACTATCAAGATCGAGACAAACAT | 60.127 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
723 | 735 | 8.279970 | ACGAATTTGATGAAATTGGACTATCA | 57.720 | 30.769 | 16.80 | 0.00 | 41.06 | 2.15 |
847 | 901 | 4.158579 | CCTCTAGGTTTTGCCCATTTTCTC | 59.841 | 45.833 | 0.00 | 0.00 | 38.26 | 2.87 |
848 | 902 | 4.089361 | CCTCTAGGTTTTGCCCATTTTCT | 58.911 | 43.478 | 0.00 | 0.00 | 38.26 | 2.52 |
894 | 948 | 5.793457 | GTGAAACGGACGAATAGGAAATTTG | 59.207 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1397 | 1458 | 4.910195 | ACATTAGACACTCAAATGGCAGA | 58.090 | 39.130 | 0.00 | 0.00 | 35.40 | 4.26 |
1486 | 1547 | 2.284405 | GGTCCTCCCCTCGTCCAA | 60.284 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
1756 | 1817 | 5.340803 | CAGATCAAATTGTTCATCCAGCAG | 58.659 | 41.667 | 6.79 | 0.00 | 0.00 | 4.24 |
1803 | 1864 | 0.822811 | TTGCAAAGCAAACTGGCAGA | 59.177 | 45.000 | 23.66 | 0.00 | 45.96 | 4.26 |
1946 | 2224 | 3.345508 | AAGCTGCAGAGTCATCATTGA | 57.654 | 42.857 | 20.43 | 0.00 | 0.00 | 2.57 |
1956 | 2234 | 6.102663 | ACAGTAACATACTAAAGCTGCAGAG | 58.897 | 40.000 | 20.43 | 8.39 | 37.23 | 3.35 |
1999 | 2282 | 1.757699 | GGGGGTACAGTTGCAACAAAA | 59.242 | 47.619 | 30.11 | 12.49 | 0.00 | 2.44 |
2019 | 2302 | 7.047891 | TGTACTTAATTCTCCATAACAGCAGG | 58.952 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
2020 | 2303 | 8.492673 | TTGTACTTAATTCTCCATAACAGCAG | 57.507 | 34.615 | 0.00 | 0.00 | 0.00 | 4.24 |
2067 | 2352 | 8.836413 | GCAAGCAAAGACTGTTATACCATATAA | 58.164 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
2073 | 2358 | 3.682858 | TCGCAAGCAAAGACTGTTATACC | 59.317 | 43.478 | 0.00 | 0.00 | 37.18 | 2.73 |
2074 | 2359 | 4.389077 | ACTCGCAAGCAAAGACTGTTATAC | 59.611 | 41.667 | 0.00 | 0.00 | 37.18 | 1.47 |
2082 | 2367 | 2.223249 | TGACAAACTCGCAAGCAAAGAC | 60.223 | 45.455 | 0.00 | 0.00 | 37.18 | 3.01 |
2094 | 2379 | 8.871686 | AATGGTTAAAGACAAATGACAAACTC | 57.128 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
2109 | 2394 | 9.831737 | CACTTTGAATCTACTGAATGGTTAAAG | 57.168 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
2132 | 2417 | 8.095452 | ACCAAATCTTCTATATGGAGAACACT | 57.905 | 34.615 | 0.00 | 0.00 | 35.16 | 3.55 |
2134 | 2419 | 8.651389 | CCTACCAAATCTTCTATATGGAGAACA | 58.349 | 37.037 | 0.00 | 0.00 | 35.16 | 3.18 |
2213 | 2498 | 5.618100 | ACTTGAATAGTTACACGGCCAACG | 61.618 | 45.833 | 2.24 | 0.00 | 40.95 | 4.10 |
2215 | 2500 | 3.749088 | CACTTGAATAGTTACACGGCCAA | 59.251 | 43.478 | 2.24 | 0.00 | 33.85 | 4.52 |
2216 | 2501 | 3.007074 | TCACTTGAATAGTTACACGGCCA | 59.993 | 43.478 | 2.24 | 0.00 | 33.85 | 5.36 |
2217 | 2502 | 3.592059 | TCACTTGAATAGTTACACGGCC | 58.408 | 45.455 | 0.00 | 0.00 | 33.85 | 6.13 |
2218 | 2503 | 4.449743 | TGTTCACTTGAATAGTTACACGGC | 59.550 | 41.667 | 0.00 | 0.00 | 36.33 | 5.68 |
2219 | 2504 | 6.721571 | ATGTTCACTTGAATAGTTACACGG | 57.278 | 37.500 | 0.00 | 0.00 | 33.84 | 4.94 |
2278 | 2602 | 0.827507 | TTTCAGAAACAGCAGGGGGC | 60.828 | 55.000 | 0.00 | 0.00 | 45.30 | 5.80 |
2281 | 2605 | 4.925646 | GCTTTAATTTCAGAAACAGCAGGG | 59.074 | 41.667 | 0.00 | 0.00 | 0.00 | 4.45 |
2300 | 2624 | 7.651027 | AGCATAGAACAATATTTCCAGCTTT | 57.349 | 32.000 | 0.00 | 0.00 | 28.56 | 3.51 |
2302 | 2626 | 7.340232 | TCAAAGCATAGAACAATATTTCCAGCT | 59.660 | 33.333 | 0.00 | 0.00 | 32.12 | 4.24 |
2312 | 2636 | 6.294731 | GGTGAAGGTTCAAAGCATAGAACAAT | 60.295 | 38.462 | 14.36 | 5.15 | 44.46 | 2.71 |
2381 | 2705 | 0.036732 | AGCTGCAAATTGGTCGAGGA | 59.963 | 50.000 | 1.02 | 0.00 | 0.00 | 3.71 |
2382 | 2706 | 0.883833 | AAGCTGCAAATTGGTCGAGG | 59.116 | 50.000 | 1.02 | 0.00 | 0.00 | 4.63 |
2470 | 2795 | 7.777095 | ACTTCAGTTCATCTATAACCTCAGAC | 58.223 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
2471 | 2796 | 7.962995 | ACTTCAGTTCATCTATAACCTCAGA | 57.037 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2581 | 2906 | 1.539929 | GCAGATTCATCCACCTCCTCG | 60.540 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
2614 | 2939 | 4.952262 | TTCAGCATATTCAGCACACTTC | 57.048 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
2734 | 3059 | 5.726793 | AGGGTGATTGTCCAAGTTAGAGTAT | 59.273 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2809 | 3134 | 1.073284 | GTTGTAGCTGTTTCCCCAGGA | 59.927 | 52.381 | 0.00 | 0.00 | 32.92 | 3.86 |
2824 | 3149 | 7.763985 | TGAAGCTTGATGATATCTTTCGTTGTA | 59.236 | 33.333 | 2.10 | 0.00 | 0.00 | 2.41 |
2965 | 3290 | 7.773224 | TCATCTTTTGTTTCCTTCTGAACTACA | 59.227 | 33.333 | 0.00 | 0.00 | 31.05 | 2.74 |
3029 | 3354 | 7.119407 | CACATGATCATATCATCTCAAGGAACC | 59.881 | 40.741 | 8.15 | 0.00 | 46.62 | 3.62 |
3064 | 3389 | 4.283978 | ACATGTTCTCCCATTTTTGCATCA | 59.716 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
3069 | 4070 | 7.910162 | CGATACTAACATGTTCTCCCATTTTTG | 59.090 | 37.037 | 15.85 | 0.00 | 0.00 | 2.44 |
3094 | 4095 | 7.358352 | GGTCAATTTTTAAGCATCAAGTCAACG | 60.358 | 37.037 | 0.00 | 0.00 | 0.00 | 4.10 |
3139 | 4151 | 6.811634 | TTAAATCTCCCCTAAACCGACATA | 57.188 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
3172 | 4184 | 6.884280 | AACAGTCCAGGTTTAATTTCAGAG | 57.116 | 37.500 | 0.00 | 0.00 | 0.00 | 3.35 |
3200 | 4803 | 8.996988 | TGAACAGAACAAATATGTCGTAAAAC | 57.003 | 30.769 | 0.00 | 0.00 | 39.40 | 2.43 |
3336 | 4941 | 6.464222 | CAAGAAACATGACAGTCCCTACTAA | 58.536 | 40.000 | 0.00 | 0.00 | 33.48 | 2.24 |
3338 | 4943 | 4.804261 | GCAAGAAACATGACAGTCCCTACT | 60.804 | 45.833 | 0.00 | 0.00 | 35.91 | 2.57 |
3339 | 4944 | 3.437049 | GCAAGAAACATGACAGTCCCTAC | 59.563 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
3340 | 4945 | 3.327757 | AGCAAGAAACATGACAGTCCCTA | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
3342 | 4947 | 2.508526 | AGCAAGAAACATGACAGTCCC | 58.491 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
3343 | 4948 | 3.316308 | ACAAGCAAGAAACATGACAGTCC | 59.684 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
3345 | 4950 | 6.639632 | ATTACAAGCAAGAAACATGACAGT | 57.360 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
3346 | 4951 | 7.325338 | CAGAATTACAAGCAAGAAACATGACAG | 59.675 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3364 | 4985 | 5.973565 | GGTATGCAATGCAGTTCAGAATTAC | 59.026 | 40.000 | 14.98 | 7.61 | 43.65 | 1.89 |
3370 | 4991 | 2.009051 | TCGGTATGCAATGCAGTTCAG | 58.991 | 47.619 | 14.98 | 7.38 | 43.65 | 3.02 |
3403 | 5024 | 1.282875 | GAAAGCACCGCCAACTGAC | 59.717 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
3425 | 5046 | 9.705290 | GGTTTTACAGATTCATTAACAACCAAT | 57.295 | 29.630 | 0.00 | 0.00 | 31.95 | 3.16 |
3461 | 5082 | 9.679661 | TCAGTTGCAGAAGATAAATGGTTTATA | 57.320 | 29.630 | 0.00 | 0.00 | 36.04 | 0.98 |
3467 | 5088 | 7.066645 | TCTCAATCAGTTGCAGAAGATAAATGG | 59.933 | 37.037 | 0.00 | 0.00 | 35.26 | 3.16 |
3496 | 5117 | 8.720562 | AGGTTGTCAAAATTAATAAGCAAATGC | 58.279 | 29.630 | 0.00 | 0.00 | 42.49 | 3.56 |
3955 | 5601 | 2.364632 | TCGTTATCCGTCTTACCCGAA | 58.635 | 47.619 | 0.00 | 0.00 | 37.94 | 4.30 |
3960 | 5606 | 8.967552 | ATATCTTGAATCGTTATCCGTCTTAC | 57.032 | 34.615 | 0.00 | 0.00 | 37.94 | 2.34 |
4118 | 5766 | 9.799106 | TTATCTTTCTTGAGACCTTCAGAATTT | 57.201 | 29.630 | 0.00 | 0.00 | 37.07 | 1.82 |
4223 | 5872 | 6.094603 | CCATGCAAAGCTTCAGAGTTAATACT | 59.905 | 38.462 | 0.00 | 0.00 | 37.31 | 2.12 |
4233 | 5882 | 4.978083 | ATACTTCCATGCAAAGCTTCAG | 57.022 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
4278 | 5929 | 6.655078 | ATCATACTAATCATTTTGGGCCAC | 57.345 | 37.500 | 5.23 | 0.00 | 0.00 | 5.01 |
4281 | 5932 | 7.653311 | GGTTGAATCATACTAATCATTTTGGGC | 59.347 | 37.037 | 0.00 | 0.00 | 0.00 | 5.36 |
4306 | 5957 | 0.244450 | AAGTGCAAATCATGGCGTGG | 59.756 | 50.000 | 6.90 | 0.00 | 0.00 | 4.94 |
4307 | 5958 | 1.068402 | TCAAGTGCAAATCATGGCGTG | 60.068 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
4316 | 5967 | 3.071312 | TGCCAGGAAAATCAAGTGCAAAT | 59.929 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
4334 | 5985 | 9.461312 | ACAGAATATTTTATCAACTTAGTGCCA | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 4.92 |
4335 | 5986 | 9.722056 | CACAGAATATTTTATCAACTTAGTGCC | 57.278 | 33.333 | 0.00 | 0.00 | 0.00 | 5.01 |
4336 | 5987 | 9.226345 | GCACAGAATATTTTATCAACTTAGTGC | 57.774 | 33.333 | 0.00 | 0.00 | 38.34 | 4.40 |
4349 | 6000 | 9.090692 | GACATTTTAGCATGCACAGAATATTTT | 57.909 | 29.630 | 21.98 | 0.00 | 0.00 | 1.82 |
4414 | 6065 | 2.299013 | TCAGCAGATGTAGGAAACACGT | 59.701 | 45.455 | 0.00 | 0.00 | 42.09 | 4.49 |
4416 | 6067 | 4.153117 | CAGTTCAGCAGATGTAGGAAACAC | 59.847 | 45.833 | 0.00 | 0.00 | 42.09 | 3.32 |
4561 | 6218 | 5.163513 | CAGTAAAAAGGTAATGCCAAGCAG | 58.836 | 41.667 | 0.00 | 0.00 | 43.65 | 4.24 |
4586 | 6243 | 8.458573 | AAGGTAACACAAAACTCATACATTCA | 57.541 | 30.769 | 0.00 | 0.00 | 41.41 | 2.57 |
4657 | 6314 | 1.640428 | TCCTGCGAATTTCTGCGTAG | 58.360 | 50.000 | 0.00 | 0.00 | 39.44 | 3.51 |
4661 | 6318 | 1.382522 | TGGATCCTGCGAATTTCTGC | 58.617 | 50.000 | 14.23 | 6.36 | 0.00 | 4.26 |
4690 | 6347 | 4.569943 | TCTGTTTTGGAGAGAGGATTTCG | 58.430 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
4739 | 6396 | 2.733858 | GCACTTTGCTTTGGTTCGAACA | 60.734 | 45.455 | 28.24 | 12.75 | 40.96 | 3.18 |
4757 | 6414 | 1.808411 | TCATCAACCGGAAAGAGCAC | 58.192 | 50.000 | 9.46 | 0.00 | 0.00 | 4.40 |
4776 | 6433 | 8.678199 | GCAAAACCTAGAAAGAAATAGCACTAT | 58.322 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
4833 | 6490 | 2.135139 | TCGATTGTCATATTGCCGCTC | 58.865 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
4856 | 6513 | 2.370849 | ACAAAATACCAGGACCACGTCT | 59.629 | 45.455 | 0.00 | 0.00 | 32.47 | 4.18 |
4882 | 6540 | 0.321671 | AACCACTGTCACAGATCCCG | 59.678 | 55.000 | 13.14 | 0.00 | 35.18 | 5.14 |
4895 | 6553 | 5.247862 | CGGTATTTTACCCAACTAACCACT | 58.752 | 41.667 | 0.00 | 0.00 | 46.27 | 4.00 |
4897 | 6555 | 4.567327 | CCCGGTATTTTACCCAACTAACCA | 60.567 | 45.833 | 0.00 | 0.00 | 46.27 | 3.67 |
5018 | 6685 | 9.507280 | CAATTTGCCACAGATATACTTTTACTG | 57.493 | 33.333 | 0.00 | 0.00 | 35.14 | 2.74 |
5028 | 6695 | 6.996509 | ACAGAAAACAATTTGCCACAGATAT | 58.003 | 32.000 | 0.00 | 0.00 | 0.00 | 1.63 |
5029 | 6696 | 6.403866 | ACAGAAAACAATTTGCCACAGATA | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
5030 | 6697 | 5.280654 | ACAGAAAACAATTTGCCACAGAT | 57.719 | 34.783 | 0.00 | 0.00 | 0.00 | 2.90 |
5031 | 6698 | 4.734398 | ACAGAAAACAATTTGCCACAGA | 57.266 | 36.364 | 0.00 | 0.00 | 0.00 | 3.41 |
5033 | 6700 | 6.016777 | ACAAAAACAGAAAACAATTTGCCACA | 60.017 | 30.769 | 0.00 | 0.00 | 32.49 | 4.17 |
5034 | 6701 | 6.377780 | ACAAAAACAGAAAACAATTTGCCAC | 58.622 | 32.000 | 0.00 | 0.00 | 32.49 | 5.01 |
5035 | 6702 | 6.566197 | ACAAAAACAGAAAACAATTTGCCA | 57.434 | 29.167 | 0.00 | 0.00 | 32.49 | 4.92 |
5036 | 6703 | 7.865875 | AAACAAAAACAGAAAACAATTTGCC | 57.134 | 28.000 | 0.00 | 0.00 | 32.49 | 4.52 |
5048 | 6715 | 9.602568 | GGTTTAATCCCTTAAAACAAAAACAGA | 57.397 | 29.630 | 1.96 | 0.00 | 41.94 | 3.41 |
5049 | 6716 | 8.832521 | GGGTTTAATCCCTTAAAACAAAAACAG | 58.167 | 33.333 | 13.60 | 0.00 | 43.42 | 3.16 |
5051 | 6718 | 7.774157 | TGGGGTTTAATCCCTTAAAACAAAAAC | 59.226 | 33.333 | 15.13 | 1.27 | 43.42 | 2.43 |
5052 | 6719 | 7.868974 | TGGGGTTTAATCCCTTAAAACAAAAA | 58.131 | 30.769 | 15.13 | 0.00 | 43.42 | 1.94 |
5053 | 6720 | 7.447510 | TGGGGTTTAATCCCTTAAAACAAAA | 57.552 | 32.000 | 15.13 | 0.00 | 43.42 | 2.44 |
5054 | 6721 | 7.514473 | AGATGGGGTTTAATCCCTTAAAACAAA | 59.486 | 33.333 | 15.13 | 0.00 | 43.42 | 2.83 |
5055 | 6722 | 7.020009 | AGATGGGGTTTAATCCCTTAAAACAA | 58.980 | 34.615 | 15.13 | 0.00 | 43.42 | 2.83 |
5056 | 6723 | 6.566914 | AGATGGGGTTTAATCCCTTAAAACA | 58.433 | 36.000 | 15.13 | 9.34 | 43.42 | 2.83 |
5071 | 6738 | 4.578149 | AGAGGATTAGGTAGATGGGGTT | 57.422 | 45.455 | 0.00 | 0.00 | 0.00 | 4.11 |
5085 | 6752 | 9.975218 | TTTAAGAAACTAAAGGCATAGAGGATT | 57.025 | 29.630 | 4.59 | 0.00 | 0.00 | 3.01 |
5118 | 6785 | 6.803154 | AGGACAACAGTATAAAGACAAAGC | 57.197 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
5236 | 6904 | 5.452078 | TTTTCAGGTGCCTTATTTGTCTG | 57.548 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
5237 | 6905 | 6.570378 | CGATTTTTCAGGTGCCTTATTTGTCT | 60.570 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
5243 | 6911 | 3.023832 | CCCGATTTTTCAGGTGCCTTAT | 58.976 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
5245 | 6913 | 1.256812 | CCCGATTTTTCAGGTGCCTT | 58.743 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5258 | 6926 | 4.381718 | CGTTCTTCTTCCTCTAACCCGATT | 60.382 | 45.833 | 0.00 | 0.00 | 0.00 | 3.34 |
5259 | 6927 | 3.130693 | CGTTCTTCTTCCTCTAACCCGAT | 59.869 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
5267 | 6935 | 2.172679 | GGTCCTCGTTCTTCTTCCTCT | 58.827 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
5268 | 6936 | 1.893801 | TGGTCCTCGTTCTTCTTCCTC | 59.106 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
5269 | 6937 | 2.011122 | TGGTCCTCGTTCTTCTTCCT | 57.989 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5270 | 6938 | 2.028020 | ACATGGTCCTCGTTCTTCTTCC | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
5271 | 6939 | 3.254892 | GACATGGTCCTCGTTCTTCTTC | 58.745 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
5272 | 6940 | 3.320673 | GACATGGTCCTCGTTCTTCTT | 57.679 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
5284 | 6952 | 0.179034 | GGCTCCATCTGGACATGGTC | 60.179 | 60.000 | 0.00 | 0.00 | 43.62 | 4.02 |
5285 | 6953 | 1.918253 | GGCTCCATCTGGACATGGT | 59.082 | 57.895 | 0.00 | 0.00 | 43.62 | 3.55 |
5286 | 6954 | 1.227764 | CGGCTCCATCTGGACATGG | 60.228 | 63.158 | 0.00 | 0.00 | 44.45 | 3.66 |
5287 | 6955 | 0.531532 | GACGGCTCCATCTGGACATG | 60.532 | 60.000 | 0.00 | 0.00 | 39.78 | 3.21 |
5288 | 6956 | 1.826024 | GACGGCTCCATCTGGACAT | 59.174 | 57.895 | 0.00 | 0.00 | 39.78 | 3.06 |
5289 | 6957 | 2.710902 | CGACGGCTCCATCTGGACA | 61.711 | 63.158 | 0.00 | 0.00 | 39.78 | 4.02 |
5290 | 6958 | 2.105128 | CGACGGCTCCATCTGGAC | 59.895 | 66.667 | 0.00 | 0.00 | 39.78 | 4.02 |
5291 | 6959 | 2.362503 | ACGACGGCTCCATCTGGA | 60.363 | 61.111 | 0.00 | 0.00 | 43.08 | 3.86 |
5292 | 6960 | 2.105128 | GACGACGGCTCCATCTGG | 59.895 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
5293 | 6961 | 1.064946 | GAGACGACGGCTCCATCTG | 59.935 | 63.158 | 20.47 | 0.00 | 0.00 | 2.90 |
5294 | 6962 | 0.681564 | AAGAGACGACGGCTCCATCT | 60.682 | 55.000 | 26.87 | 5.66 | 32.82 | 2.90 |
5295 | 6963 | 0.248702 | GAAGAGACGACGGCTCCATC | 60.249 | 60.000 | 26.87 | 20.70 | 32.82 | 3.51 |
5296 | 6964 | 1.810532 | GAAGAGACGACGGCTCCAT | 59.189 | 57.895 | 26.87 | 16.47 | 32.82 | 3.41 |
5297 | 6965 | 2.687805 | CGAAGAGACGACGGCTCCA | 61.688 | 63.158 | 26.87 | 0.00 | 32.82 | 3.86 |
5298 | 6966 | 2.100603 | CGAAGAGACGACGGCTCC | 59.899 | 66.667 | 26.87 | 11.84 | 32.82 | 4.70 |
5299 | 6967 | 1.066114 | CAACGAAGAGACGACGGCTC | 61.066 | 60.000 | 23.47 | 23.47 | 37.03 | 4.70 |
5300 | 6968 | 1.081376 | CAACGAAGAGACGACGGCT | 60.081 | 57.895 | 0.71 | 0.71 | 37.03 | 5.52 |
5301 | 6969 | 1.066114 | CTCAACGAAGAGACGACGGC | 61.066 | 60.000 | 0.00 | 0.00 | 37.87 | 5.68 |
5302 | 6970 | 1.066114 | GCTCAACGAAGAGACGACGG | 61.066 | 60.000 | 11.94 | 0.00 | 37.87 | 4.79 |
5303 | 6971 | 0.110147 | AGCTCAACGAAGAGACGACG | 60.110 | 55.000 | 11.94 | 0.00 | 37.87 | 5.12 |
5304 | 6972 | 2.053282 | AAGCTCAACGAAGAGACGAC | 57.947 | 50.000 | 11.94 | 0.00 | 37.87 | 4.34 |
5305 | 6973 | 3.181499 | GGATAAGCTCAACGAAGAGACGA | 60.181 | 47.826 | 11.94 | 0.00 | 37.87 | 4.20 |
5306 | 6974 | 3.109619 | GGATAAGCTCAACGAAGAGACG | 58.890 | 50.000 | 11.94 | 0.00 | 37.87 | 4.18 |
5307 | 6975 | 4.097286 | AGAGGATAAGCTCAACGAAGAGAC | 59.903 | 45.833 | 11.94 | 4.75 | 37.87 | 3.36 |
5308 | 6976 | 4.274147 | AGAGGATAAGCTCAACGAAGAGA | 58.726 | 43.478 | 11.94 | 0.00 | 37.87 | 3.10 |
5309 | 6977 | 4.606961 | GAGAGGATAAGCTCAACGAAGAG | 58.393 | 47.826 | 0.00 | 0.00 | 38.68 | 2.85 |
5310 | 6978 | 3.065510 | CGAGAGGATAAGCTCAACGAAGA | 59.934 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
5311 | 6979 | 3.181495 | ACGAGAGGATAAGCTCAACGAAG | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.79 |
5312 | 6980 | 2.753452 | ACGAGAGGATAAGCTCAACGAA | 59.247 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
5313 | 6981 | 2.366533 | ACGAGAGGATAAGCTCAACGA | 58.633 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
5314 | 6982 | 2.853731 | ACGAGAGGATAAGCTCAACG | 57.146 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
5315 | 6983 | 4.098196 | AGGTAACGAGAGGATAAGCTCAAC | 59.902 | 45.833 | 0.00 | 0.00 | 46.39 | 3.18 |
5316 | 6984 | 4.279145 | AGGTAACGAGAGGATAAGCTCAA | 58.721 | 43.478 | 0.00 | 0.00 | 46.39 | 3.02 |
5317 | 6985 | 3.899726 | AGGTAACGAGAGGATAAGCTCA | 58.100 | 45.455 | 0.00 | 0.00 | 46.39 | 4.26 |
5318 | 6986 | 5.065235 | ACTAGGTAACGAGAGGATAAGCTC | 58.935 | 45.833 | 0.00 | 0.00 | 42.75 | 4.09 |
5319 | 6987 | 5.051409 | ACTAGGTAACGAGAGGATAAGCT | 57.949 | 43.478 | 0.00 | 0.00 | 42.75 | 3.74 |
5320 | 6988 | 5.771153 | AACTAGGTAACGAGAGGATAAGC | 57.229 | 43.478 | 0.00 | 0.00 | 42.75 | 3.09 |
5321 | 6989 | 5.978322 | GCAAACTAGGTAACGAGAGGATAAG | 59.022 | 44.000 | 0.00 | 0.00 | 42.75 | 1.73 |
5322 | 6990 | 5.449588 | CGCAAACTAGGTAACGAGAGGATAA | 60.450 | 44.000 | 0.00 | 0.00 | 42.75 | 1.75 |
5323 | 6991 | 4.036027 | CGCAAACTAGGTAACGAGAGGATA | 59.964 | 45.833 | 0.00 | 0.00 | 42.75 | 2.59 |
5324 | 6992 | 3.181489 | CGCAAACTAGGTAACGAGAGGAT | 60.181 | 47.826 | 0.00 | 0.00 | 42.75 | 3.24 |
5325 | 6993 | 2.163010 | CGCAAACTAGGTAACGAGAGGA | 59.837 | 50.000 | 0.00 | 0.00 | 42.75 | 3.71 |
5326 | 6994 | 2.163010 | TCGCAAACTAGGTAACGAGAGG | 59.837 | 50.000 | 1.19 | 0.00 | 42.75 | 3.69 |
5327 | 6995 | 3.169733 | GTCGCAAACTAGGTAACGAGAG | 58.830 | 50.000 | 5.38 | 0.00 | 42.75 | 3.20 |
5328 | 6996 | 2.413239 | CGTCGCAAACTAGGTAACGAGA | 60.413 | 50.000 | 5.38 | 0.00 | 42.75 | 4.04 |
5329 | 6997 | 1.909532 | CGTCGCAAACTAGGTAACGAG | 59.090 | 52.381 | 5.38 | 0.00 | 46.00 | 4.18 |
5330 | 6998 | 1.266718 | ACGTCGCAAACTAGGTAACGA | 59.733 | 47.619 | 10.66 | 6.47 | 46.39 | 3.85 |
5331 | 6999 | 1.384409 | CACGTCGCAAACTAGGTAACG | 59.616 | 52.381 | 0.00 | 0.00 | 46.39 | 3.18 |
5332 | 7000 | 2.406357 | GTCACGTCGCAAACTAGGTAAC | 59.594 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
5333 | 7001 | 2.294233 | AGTCACGTCGCAAACTAGGTAA | 59.706 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
5334 | 7002 | 1.881973 | AGTCACGTCGCAAACTAGGTA | 59.118 | 47.619 | 0.00 | 0.00 | 0.00 | 3.08 |
5335 | 7003 | 0.672342 | AGTCACGTCGCAAACTAGGT | 59.328 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
5336 | 7004 | 1.779569 | AAGTCACGTCGCAAACTAGG | 58.220 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5337 | 7005 | 2.155155 | GGAAAGTCACGTCGCAAACTAG | 59.845 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5338 | 7006 | 2.129607 | GGAAAGTCACGTCGCAAACTA | 58.870 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
5339 | 7007 | 0.935196 | GGAAAGTCACGTCGCAAACT | 59.065 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5340 | 7008 | 0.653636 | TGGAAAGTCACGTCGCAAAC | 59.346 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
5341 | 7009 | 0.653636 | GTGGAAAGTCACGTCGCAAA | 59.346 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
5342 | 7010 | 1.155424 | GGTGGAAAGTCACGTCGCAA | 61.155 | 55.000 | 0.00 | 0.00 | 38.46 | 4.85 |
5343 | 7011 | 1.593209 | GGTGGAAAGTCACGTCGCA | 60.593 | 57.895 | 0.00 | 0.00 | 38.46 | 5.10 |
5344 | 7012 | 1.282930 | GAGGTGGAAAGTCACGTCGC | 61.283 | 60.000 | 0.00 | 0.00 | 40.89 | 5.19 |
5345 | 7013 | 2.810486 | GAGGTGGAAAGTCACGTCG | 58.190 | 57.895 | 0.00 | 0.00 | 40.89 | 5.12 |
5346 | 7014 | 0.391597 | TGGAGGTGGAAAGTCACGTC | 59.608 | 55.000 | 8.58 | 8.58 | 46.01 | 4.34 |
5347 | 7015 | 0.834612 | TTGGAGGTGGAAAGTCACGT | 59.165 | 50.000 | 0.00 | 0.00 | 38.46 | 4.49 |
5348 | 7016 | 1.806542 | CATTGGAGGTGGAAAGTCACG | 59.193 | 52.381 | 0.00 | 0.00 | 38.46 | 4.35 |
5349 | 7017 | 2.162681 | CCATTGGAGGTGGAAAGTCAC | 58.837 | 52.381 | 0.00 | 0.00 | 39.12 | 3.67 |
5350 | 7018 | 2.061848 | TCCATTGGAGGTGGAAAGTCA | 58.938 | 47.619 | 0.00 | 0.00 | 42.56 | 3.41 |
5351 | 7019 | 2.879103 | TCCATTGGAGGTGGAAAGTC | 57.121 | 50.000 | 0.00 | 0.00 | 42.56 | 3.01 |
5356 | 7024 | 1.075601 | AGCTTTCCATTGGAGGTGGA | 58.924 | 50.000 | 5.36 | 0.00 | 43.77 | 4.02 |
5357 | 7025 | 1.928868 | AAGCTTTCCATTGGAGGTGG | 58.071 | 50.000 | 5.36 | 0.00 | 38.11 | 4.61 |
5358 | 7026 | 2.028748 | CCAAAGCTTTCCATTGGAGGTG | 60.029 | 50.000 | 9.23 | 1.85 | 45.14 | 4.00 |
5359 | 7027 | 2.250924 | CCAAAGCTTTCCATTGGAGGT | 58.749 | 47.619 | 9.23 | 0.00 | 45.14 | 3.85 |
5360 | 7028 | 1.066645 | GCCAAAGCTTTCCATTGGAGG | 60.067 | 52.381 | 16.66 | 10.27 | 45.14 | 4.30 |
5361 | 7029 | 1.066645 | GGCCAAAGCTTTCCATTGGAG | 60.067 | 52.381 | 16.66 | 0.64 | 45.14 | 3.86 |
5362 | 7030 | 0.975887 | GGCCAAAGCTTTCCATTGGA | 59.024 | 50.000 | 16.66 | 0.00 | 45.14 | 3.53 |
5363 | 7031 | 0.390209 | CGGCCAAAGCTTTCCATTGG | 60.390 | 55.000 | 9.23 | 9.32 | 45.11 | 3.16 |
5364 | 7032 | 1.015607 | GCGGCCAAAGCTTTCCATTG | 61.016 | 55.000 | 9.23 | 0.00 | 39.73 | 2.82 |
5365 | 7033 | 1.293179 | GCGGCCAAAGCTTTCCATT | 59.707 | 52.632 | 9.23 | 0.00 | 39.73 | 3.16 |
5366 | 7034 | 2.649129 | GGCGGCCAAAGCTTTCCAT | 61.649 | 57.895 | 15.62 | 0.00 | 39.73 | 3.41 |
5367 | 7035 | 2.419011 | TAGGCGGCCAAAGCTTTCCA | 62.419 | 55.000 | 23.09 | 0.00 | 39.73 | 3.53 |
5368 | 7036 | 1.677633 | TAGGCGGCCAAAGCTTTCC | 60.678 | 57.895 | 23.09 | 7.81 | 39.73 | 3.13 |
5369 | 7037 | 1.506718 | GTAGGCGGCCAAAGCTTTC | 59.493 | 57.895 | 23.09 | 0.00 | 39.73 | 2.62 |
5370 | 7038 | 1.977009 | GGTAGGCGGCCAAAGCTTT | 60.977 | 57.895 | 23.09 | 5.69 | 39.73 | 3.51 |
5371 | 7039 | 2.361230 | GGTAGGCGGCCAAAGCTT | 60.361 | 61.111 | 23.09 | 0.97 | 39.73 | 3.74 |
5372 | 7040 | 3.330720 | AGGTAGGCGGCCAAAGCT | 61.331 | 61.111 | 23.09 | 19.68 | 39.73 | 3.74 |
5373 | 7041 | 2.824489 | GAGGTAGGCGGCCAAAGC | 60.824 | 66.667 | 23.09 | 17.70 | 38.76 | 3.51 |
5374 | 7042 | 2.124695 | GGAGGTAGGCGGCCAAAG | 60.125 | 66.667 | 23.09 | 0.00 | 0.00 | 2.77 |
5375 | 7043 | 4.090588 | CGGAGGTAGGCGGCCAAA | 62.091 | 66.667 | 23.09 | 5.81 | 0.00 | 3.28 |
5376 | 7044 | 3.961225 | TACGGAGGTAGGCGGCCAA | 62.961 | 63.158 | 23.09 | 0.00 | 0.00 | 4.52 |
5377 | 7045 | 4.445710 | TACGGAGGTAGGCGGCCA | 62.446 | 66.667 | 23.09 | 4.27 | 0.00 | 5.36 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.