Multiple sequence alignment - TraesCS5B01G256100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G256100 chr5B 100.000 2879 0 0 1 2879 439000606 439003484 0.000000e+00 5317
1 TraesCS5B01G256100 chr5B 93.510 339 21 1 1 338 438991754 438992092 1.190000e-138 503
2 TraesCS5B01G256100 chr5A 92.597 878 57 4 2008 2879 472252821 472253696 0.000000e+00 1254
3 TraesCS5B01G256100 chr5A 90.288 556 52 2 1468 2023 472221204 472221757 0.000000e+00 726
4 TraesCS5B01G256100 chr5A 85.403 596 32 15 544 1113 472168247 472168813 4.160000e-158 568
5 TraesCS5B01G256100 chr5A 91.818 220 12 4 1264 1477 472168933 472169152 4.660000e-78 302
6 TraesCS5B01G256100 chr5A 86.911 191 20 3 354 543 472168009 472168195 2.910000e-50 209
7 TraesCS5B01G256100 chr5D 89.749 995 44 16 1264 2238 369637129 369638085 0.000000e+00 1219
8 TraesCS5B01G256100 chr5D 92.496 573 26 7 544 1115 369636455 369637011 0.000000e+00 804
9 TraesCS5B01G256100 chr5D 87.846 469 52 2 2379 2842 369699095 369699563 1.950000e-151 545
10 TraesCS5B01G256100 chr5D 90.155 193 17 2 353 543 369636211 369636403 1.710000e-62 250
11 TraesCS5B01G256100 chr5D 96.552 87 3 0 1111 1197 369637036 369637122 8.310000e-31 145
12 TraesCS5B01G256100 chr7B 92.625 339 17 3 1 338 535758076 535758407 5.580000e-132 481
13 TraesCS5B01G256100 chr7B 91.545 343 23 4 1 338 94387311 94387652 4.340000e-128 468
14 TraesCS5B01G256100 chr2B 92.105 342 23 4 1 341 627308911 627309249 2.010000e-131 479
15 TraesCS5B01G256100 chr1B 92.330 339 21 3 1 338 320793375 320793709 7.220000e-131 477
16 TraesCS5B01G256100 chr1B 91.813 342 23 4 1 341 380156682 380156345 3.360000e-129 472
17 TraesCS5B01G256100 chr6B 92.105 342 18 7 1 341 655340869 655340536 9.340000e-130 473
18 TraesCS5B01G256100 chr4A 92.012 338 25 2 1 337 670229170 670229506 9.340000e-130 473
19 TraesCS5B01G256100 chr2D 91.570 344 23 5 1 341 602903545 602903205 1.210000e-128 470


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G256100 chr5B 439000606 439003484 2878 False 5317.000000 5317 100.000 1 2879 1 chr5B.!!$F2 2878
1 TraesCS5B01G256100 chr5A 472252821 472253696 875 False 1254.000000 1254 92.597 2008 2879 1 chr5A.!!$F2 871
2 TraesCS5B01G256100 chr5A 472221204 472221757 553 False 726.000000 726 90.288 1468 2023 1 chr5A.!!$F1 555
3 TraesCS5B01G256100 chr5A 472168009 472169152 1143 False 359.666667 568 88.044 354 1477 3 chr5A.!!$F3 1123
4 TraesCS5B01G256100 chr5D 369636211 369638085 1874 False 604.500000 1219 92.238 353 2238 4 chr5D.!!$F2 1885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.033920 GGGTTACACGGAGTCGGTTT 59.966 55.0 0.00 0.00 41.61 3.27 F
211 212 0.179153 GAATCGCCAAGCTTGCCTTC 60.179 55.0 21.43 14.81 0.00 3.46 F
425 427 0.386731 GGTGTTTTGAATGTCCGCGG 60.387 55.0 22.12 22.12 0.00 6.46 F
1198 1306 0.390603 CGCATCAACGGAACAGGGTA 60.391 55.0 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1329 0.032615 AGAGAGAGACGGCCTTCCAT 60.033 55.0 5.45 0.0 0.0 3.41 R
1226 1334 0.179029 GAGCTAGAGAGAGACGGCCT 60.179 60.0 0.00 0.0 0.0 5.19 R
1234 1342 0.328592 ACGTGGGTGAGCTAGAGAGA 59.671 55.0 0.00 0.0 0.0 3.10 R
2778 2933 0.392998 CCAAGCCACCTACGAGCATT 60.393 55.0 0.00 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.589701 TGAGTATTACAAGAGTTGATCTACCA 57.410 34.615 3.54 0.00 37.23 3.25
33 34 8.467598 TGAGTATTACAAGAGTTGATCTACCAC 58.532 37.037 3.54 0.00 37.23 4.16
34 35 7.481642 AGTATTACAAGAGTTGATCTACCACG 58.518 38.462 3.54 0.00 37.23 4.94
35 36 5.970317 TTACAAGAGTTGATCTACCACGA 57.030 39.130 3.54 0.00 37.23 4.35
36 37 4.442375 ACAAGAGTTGATCTACCACGAG 57.558 45.455 3.54 1.07 37.23 4.18
37 38 4.079970 ACAAGAGTTGATCTACCACGAGA 58.920 43.478 3.54 0.00 37.23 4.04
38 39 4.707448 ACAAGAGTTGATCTACCACGAGAT 59.293 41.667 3.54 0.00 37.23 2.75
47 48 3.413327 TCTACCACGAGATCAGATAGGC 58.587 50.000 0.00 0.00 0.00 3.93
48 49 2.373335 ACCACGAGATCAGATAGGCT 57.627 50.000 0.00 0.00 0.00 4.58
49 50 3.510531 ACCACGAGATCAGATAGGCTA 57.489 47.619 0.00 0.00 0.00 3.93
50 51 3.833732 ACCACGAGATCAGATAGGCTAA 58.166 45.455 0.00 0.00 0.00 3.09
51 52 4.215908 ACCACGAGATCAGATAGGCTAAA 58.784 43.478 0.00 0.00 0.00 1.85
52 53 4.038162 ACCACGAGATCAGATAGGCTAAAC 59.962 45.833 0.00 0.00 0.00 2.01
53 54 4.551388 CACGAGATCAGATAGGCTAAACC 58.449 47.826 0.00 0.00 39.61 3.27
54 55 3.574826 ACGAGATCAGATAGGCTAAACCC 59.425 47.826 0.00 0.00 40.58 4.11
55 56 3.829601 CGAGATCAGATAGGCTAAACCCT 59.170 47.826 0.00 0.00 40.58 4.34
56 57 5.010933 CGAGATCAGATAGGCTAAACCCTA 58.989 45.833 0.00 0.00 41.48 3.53
57 58 5.124776 CGAGATCAGATAGGCTAAACCCTAG 59.875 48.000 0.00 0.00 40.62 3.02
58 59 6.220881 AGATCAGATAGGCTAAACCCTAGA 57.779 41.667 0.00 0.00 40.62 2.43
59 60 6.625267 AGATCAGATAGGCTAAACCCTAGAA 58.375 40.000 0.00 0.00 40.62 2.10
60 61 6.723977 AGATCAGATAGGCTAAACCCTAGAAG 59.276 42.308 0.00 0.00 40.62 2.85
61 62 5.148502 TCAGATAGGCTAAACCCTAGAAGG 58.851 45.833 0.00 0.00 40.62 3.46
62 63 4.902448 CAGATAGGCTAAACCCTAGAAGGT 59.098 45.833 0.00 0.00 44.00 3.50
63 64 6.075984 CAGATAGGCTAAACCCTAGAAGGTA 58.924 44.000 0.00 0.00 40.05 3.08
64 65 6.209788 CAGATAGGCTAAACCCTAGAAGGTAG 59.790 46.154 0.00 0.00 40.05 3.18
65 66 3.039743 AGGCTAAACCCTAGAAGGTAGC 58.960 50.000 4.98 4.98 40.05 3.58
66 67 2.104451 GGCTAAACCCTAGAAGGTAGCC 59.896 54.545 13.25 13.25 44.92 3.93
67 68 3.039743 GCTAAACCCTAGAAGGTAGCCT 58.960 50.000 0.00 0.00 40.05 4.58
68 69 4.221530 GCTAAACCCTAGAAGGTAGCCTA 58.778 47.826 0.00 0.00 40.05 3.93
69 70 4.839550 GCTAAACCCTAGAAGGTAGCCTAT 59.160 45.833 0.00 0.00 40.05 2.57
70 71 5.279556 GCTAAACCCTAGAAGGTAGCCTATG 60.280 48.000 0.00 0.00 40.05 2.23
71 72 3.261818 ACCCTAGAAGGTAGCCTATGG 57.738 52.381 0.00 0.00 38.79 2.74
72 73 2.523138 ACCCTAGAAGGTAGCCTATGGT 59.477 50.000 0.00 0.00 38.79 3.55
73 74 3.731130 ACCCTAGAAGGTAGCCTATGGTA 59.269 47.826 0.00 0.00 38.79 3.25
74 75 4.360446 ACCCTAGAAGGTAGCCTATGGTAT 59.640 45.833 0.00 0.00 38.79 2.73
75 76 4.712337 CCCTAGAAGGTAGCCTATGGTATG 59.288 50.000 0.00 0.00 31.93 2.39
76 77 5.518546 CCCTAGAAGGTAGCCTATGGTATGA 60.519 48.000 0.00 0.00 31.93 2.15
77 78 6.198639 CCTAGAAGGTAGCCTATGGTATGAT 58.801 44.000 0.00 0.00 31.13 2.45
78 79 6.670027 CCTAGAAGGTAGCCTATGGTATGATT 59.330 42.308 0.00 0.00 31.13 2.57
79 80 6.365970 AGAAGGTAGCCTATGGTATGATTG 57.634 41.667 0.00 0.00 31.13 2.67
80 81 5.846714 AGAAGGTAGCCTATGGTATGATTGT 59.153 40.000 0.00 0.00 31.13 2.71
81 82 6.330250 AGAAGGTAGCCTATGGTATGATTGTT 59.670 38.462 0.00 0.00 31.13 2.83
82 83 5.869579 AGGTAGCCTATGGTATGATTGTTG 58.130 41.667 0.00 0.00 28.47 3.33
83 84 5.369699 AGGTAGCCTATGGTATGATTGTTGT 59.630 40.000 0.00 0.00 28.47 3.32
84 85 6.062095 GGTAGCCTATGGTATGATTGTTGTT 58.938 40.000 0.00 0.00 0.00 2.83
85 86 7.071950 AGGTAGCCTATGGTATGATTGTTGTTA 59.928 37.037 0.00 0.00 28.47 2.41
86 87 7.883311 GGTAGCCTATGGTATGATTGTTGTTAT 59.117 37.037 0.00 0.00 0.00 1.89
87 88 9.284968 GTAGCCTATGGTATGATTGTTGTTATT 57.715 33.333 0.00 0.00 0.00 1.40
88 89 8.169977 AGCCTATGGTATGATTGTTGTTATTG 57.830 34.615 0.00 0.00 0.00 1.90
89 90 7.779798 AGCCTATGGTATGATTGTTGTTATTGT 59.220 33.333 0.00 0.00 0.00 2.71
90 91 8.413229 GCCTATGGTATGATTGTTGTTATTGTT 58.587 33.333 0.00 0.00 0.00 2.83
91 92 9.734620 CCTATGGTATGATTGTTGTTATTGTTG 57.265 33.333 0.00 0.00 0.00 3.33
104 105 9.944663 TGTTGTTATTGTTGTTATTCTTGAGTC 57.055 29.630 0.00 0.00 0.00 3.36
105 106 9.394477 GTTGTTATTGTTGTTATTCTTGAGTCC 57.606 33.333 0.00 0.00 0.00 3.85
106 107 8.918202 TGTTATTGTTGTTATTCTTGAGTCCT 57.082 30.769 0.00 0.00 0.00 3.85
109 110 7.596749 ATTGTTGTTATTCTTGAGTCCTACG 57.403 36.000 0.00 0.00 0.00 3.51
110 111 5.475719 TGTTGTTATTCTTGAGTCCTACGG 58.524 41.667 0.00 0.00 0.00 4.02
111 112 5.244402 TGTTGTTATTCTTGAGTCCTACGGA 59.756 40.000 0.00 0.00 0.00 4.69
127 128 2.685850 CGGACTAAATCCTCCGGTTT 57.314 50.000 0.00 0.00 46.69 3.27
128 129 3.806625 CGGACTAAATCCTCCGGTTTA 57.193 47.619 0.00 0.00 46.69 2.01
129 130 4.332428 CGGACTAAATCCTCCGGTTTAT 57.668 45.455 0.00 0.00 46.69 1.40
130 131 5.458041 CGGACTAAATCCTCCGGTTTATA 57.542 43.478 0.00 0.00 46.69 0.98
131 132 6.034161 CGGACTAAATCCTCCGGTTTATAT 57.966 41.667 0.00 0.00 46.69 0.86
132 133 7.161773 CGGACTAAATCCTCCGGTTTATATA 57.838 40.000 0.00 0.00 46.69 0.86
133 134 7.256286 CGGACTAAATCCTCCGGTTTATATAG 58.744 42.308 0.00 2.04 46.69 1.31
134 135 7.121759 CGGACTAAATCCTCCGGTTTATATAGA 59.878 40.741 0.00 0.00 46.69 1.98
135 136 8.249638 GGACTAAATCCTCCGGTTTATATAGAC 58.750 40.741 0.00 0.00 45.22 2.59
136 137 8.716674 ACTAAATCCTCCGGTTTATATAGACA 57.283 34.615 0.00 0.00 0.00 3.41
137 138 8.583296 ACTAAATCCTCCGGTTTATATAGACAC 58.417 37.037 0.00 0.00 0.00 3.67
138 139 5.997384 ATCCTCCGGTTTATATAGACACC 57.003 43.478 0.00 2.59 0.00 4.16
155 156 2.284493 CGGAGGGGGCTAGGGTTA 59.716 66.667 0.00 0.00 0.00 2.85
156 157 2.138831 CGGAGGGGGCTAGGGTTAC 61.139 68.421 0.00 0.00 0.00 2.50
157 158 1.003835 GGAGGGGGCTAGGGTTACA 59.996 63.158 0.00 0.00 0.00 2.41
158 159 1.343431 GGAGGGGGCTAGGGTTACAC 61.343 65.000 0.00 0.00 0.00 2.90
159 160 1.683418 GAGGGGGCTAGGGTTACACG 61.683 65.000 0.00 0.00 0.00 4.49
160 161 2.738938 GGGGGCTAGGGTTACACGG 61.739 68.421 0.00 0.00 0.00 4.94
161 162 1.686800 GGGGCTAGGGTTACACGGA 60.687 63.158 0.00 0.00 0.00 4.69
162 163 1.683418 GGGGCTAGGGTTACACGGAG 61.683 65.000 0.00 0.00 0.00 4.63
164 165 0.459078 GGCTAGGGTTACACGGAGTC 59.541 60.000 0.00 0.00 41.61 3.36
165 166 0.100146 GCTAGGGTTACACGGAGTCG 59.900 60.000 0.00 0.00 41.61 4.18
166 167 0.737219 CTAGGGTTACACGGAGTCGG 59.263 60.000 0.00 0.00 41.61 4.79
167 168 0.038166 TAGGGTTACACGGAGTCGGT 59.962 55.000 0.00 0.00 41.61 4.69
168 169 0.829182 AGGGTTACACGGAGTCGGTT 60.829 55.000 0.00 0.00 41.61 4.44
169 170 0.033920 GGGTTACACGGAGTCGGTTT 59.966 55.000 0.00 0.00 41.61 3.27
170 171 1.272212 GGGTTACACGGAGTCGGTTTA 59.728 52.381 0.00 0.00 41.61 2.01
171 172 2.328473 GGTTACACGGAGTCGGTTTAC 58.672 52.381 0.00 0.28 41.61 2.01
172 173 2.288152 GGTTACACGGAGTCGGTTTACA 60.288 50.000 0.00 0.00 41.61 2.41
173 174 2.982470 GTTACACGGAGTCGGTTTACAG 59.018 50.000 0.00 0.00 41.61 2.74
174 175 1.321474 ACACGGAGTCGGTTTACAGA 58.679 50.000 0.00 0.00 41.61 3.41
175 176 1.268899 ACACGGAGTCGGTTTACAGAG 59.731 52.381 0.00 0.00 41.61 3.35
176 177 1.268899 CACGGAGTCGGTTTACAGAGT 59.731 52.381 0.00 0.00 41.61 3.24
177 178 2.485426 CACGGAGTCGGTTTACAGAGTA 59.515 50.000 0.00 0.00 41.61 2.59
178 179 2.746362 ACGGAGTCGGTTTACAGAGTAG 59.254 50.000 0.00 0.00 29.74 2.57
179 180 2.097142 CGGAGTCGGTTTACAGAGTAGG 59.903 54.545 0.00 0.00 0.00 3.18
180 181 3.350833 GGAGTCGGTTTACAGAGTAGGA 58.649 50.000 0.00 0.00 0.00 2.94
181 182 3.377798 GGAGTCGGTTTACAGAGTAGGAG 59.622 52.174 0.00 0.00 0.00 3.69
182 183 3.354467 AGTCGGTTTACAGAGTAGGAGG 58.646 50.000 0.00 0.00 0.00 4.30
183 184 3.087781 GTCGGTTTACAGAGTAGGAGGT 58.912 50.000 0.00 0.00 0.00 3.85
184 185 3.128415 GTCGGTTTACAGAGTAGGAGGTC 59.872 52.174 0.00 0.00 0.00 3.85
185 186 3.009916 TCGGTTTACAGAGTAGGAGGTCT 59.990 47.826 0.00 0.00 0.00 3.85
186 187 4.225942 TCGGTTTACAGAGTAGGAGGTCTA 59.774 45.833 0.00 0.00 0.00 2.59
187 188 4.335037 CGGTTTACAGAGTAGGAGGTCTAC 59.665 50.000 0.00 0.00 46.63 2.59
197 198 5.365403 GTAGGAGGTCTACATCTGAATCG 57.635 47.826 0.00 0.00 45.79 3.34
198 199 2.625790 AGGAGGTCTACATCTGAATCGC 59.374 50.000 0.00 0.00 0.00 4.58
199 200 2.288518 GGAGGTCTACATCTGAATCGCC 60.289 54.545 0.00 0.00 0.00 5.54
200 201 2.362397 GAGGTCTACATCTGAATCGCCA 59.638 50.000 0.00 0.00 0.00 5.69
201 202 2.766263 AGGTCTACATCTGAATCGCCAA 59.234 45.455 0.00 0.00 0.00 4.52
202 203 3.126831 GGTCTACATCTGAATCGCCAAG 58.873 50.000 0.00 0.00 0.00 3.61
203 204 2.541762 GTCTACATCTGAATCGCCAAGC 59.458 50.000 0.00 0.00 0.00 4.01
204 205 2.432146 TCTACATCTGAATCGCCAAGCT 59.568 45.455 0.00 0.00 0.00 3.74
205 206 2.119801 ACATCTGAATCGCCAAGCTT 57.880 45.000 0.00 0.00 0.00 3.74
206 207 1.741706 ACATCTGAATCGCCAAGCTTG 59.258 47.619 19.93 19.93 0.00 4.01
207 208 0.737219 ATCTGAATCGCCAAGCTTGC 59.263 50.000 21.43 14.85 0.00 4.01
208 209 1.138247 CTGAATCGCCAAGCTTGCC 59.862 57.895 21.43 9.45 0.00 4.52
209 210 1.303561 TGAATCGCCAAGCTTGCCT 60.304 52.632 21.43 2.43 0.00 4.75
210 211 0.895100 TGAATCGCCAAGCTTGCCTT 60.895 50.000 21.43 10.35 0.00 4.35
211 212 0.179153 GAATCGCCAAGCTTGCCTTC 60.179 55.000 21.43 14.81 0.00 3.46
212 213 1.598701 AATCGCCAAGCTTGCCTTCC 61.599 55.000 21.43 5.26 0.00 3.46
213 214 2.769652 ATCGCCAAGCTTGCCTTCCA 62.770 55.000 21.43 1.33 0.00 3.53
214 215 2.653115 GCCAAGCTTGCCTTCCAC 59.347 61.111 21.43 0.12 0.00 4.02
215 216 2.956987 CCAAGCTTGCCTTCCACG 59.043 61.111 21.43 0.62 0.00 4.94
216 217 2.256461 CAAGCTTGCCTTCCACGC 59.744 61.111 14.65 0.00 38.87 5.34
217 218 2.203337 AAGCTTGCCTTCCACGCA 60.203 55.556 0.00 0.00 40.87 5.24
218 219 1.827789 AAGCTTGCCTTCCACGCAA 60.828 52.632 0.00 0.00 43.71 4.85
221 222 2.513395 TTGCCTTCCACGCAAGGA 59.487 55.556 11.63 0.00 45.41 3.36
222 223 1.152860 TTGCCTTCCACGCAAGGAA 60.153 52.632 11.63 5.78 45.41 3.36
223 224 0.753479 TTGCCTTCCACGCAAGGAAA 60.753 50.000 11.63 5.35 46.44 3.13
224 225 1.172180 TGCCTTCCACGCAAGGAAAG 61.172 55.000 11.63 2.03 46.44 2.62
225 226 1.172812 GCCTTCCACGCAAGGAAAGT 61.173 55.000 11.63 0.00 46.44 2.66
226 227 1.318576 CCTTCCACGCAAGGAAAGTT 58.681 50.000 8.09 0.00 46.44 2.66
227 228 1.266989 CCTTCCACGCAAGGAAAGTTC 59.733 52.381 8.09 0.00 46.44 3.01
228 229 1.266989 CTTCCACGCAAGGAAAGTTCC 59.733 52.381 8.09 1.53 46.44 3.62
267 268 7.820044 ACGAAGTCTTCAATCTTGTATCTTC 57.180 36.000 12.99 0.00 29.74 2.87
268 269 7.378966 ACGAAGTCTTCAATCTTGTATCTTCA 58.621 34.615 12.99 0.00 29.74 3.02
269 270 8.037758 ACGAAGTCTTCAATCTTGTATCTTCAT 58.962 33.333 12.99 0.00 29.74 2.57
270 271 9.521503 CGAAGTCTTCAATCTTGTATCTTCATA 57.478 33.333 12.99 0.00 32.10 2.15
274 275 9.255304 GTCTTCAATCTTGTATCTTCATAGTCC 57.745 37.037 0.00 0.00 0.00 3.85
275 276 8.981659 TCTTCAATCTTGTATCTTCATAGTCCA 58.018 33.333 0.00 0.00 0.00 4.02
276 277 9.605275 CTTCAATCTTGTATCTTCATAGTCCAA 57.395 33.333 0.00 0.00 0.00 3.53
277 278 8.948631 TCAATCTTGTATCTTCATAGTCCAAC 57.051 34.615 0.00 0.00 0.00 3.77
278 279 8.539544 TCAATCTTGTATCTTCATAGTCCAACA 58.460 33.333 0.00 0.00 0.00 3.33
279 280 9.166173 CAATCTTGTATCTTCATAGTCCAACAA 57.834 33.333 0.00 0.00 0.00 2.83
280 281 9.911788 AATCTTGTATCTTCATAGTCCAACAAT 57.088 29.630 0.00 0.00 0.00 2.71
281 282 9.911788 ATCTTGTATCTTCATAGTCCAACAATT 57.088 29.630 0.00 0.00 0.00 2.32
282 283 9.383519 TCTTGTATCTTCATAGTCCAACAATTC 57.616 33.333 0.00 0.00 0.00 2.17
283 284 9.166173 CTTGTATCTTCATAGTCCAACAATTCA 57.834 33.333 0.00 0.00 0.00 2.57
284 285 8.722480 TGTATCTTCATAGTCCAACAATTCAG 57.278 34.615 0.00 0.00 0.00 3.02
285 286 6.690194 ATCTTCATAGTCCAACAATTCAGC 57.310 37.500 0.00 0.00 0.00 4.26
286 287 4.943705 TCTTCATAGTCCAACAATTCAGCC 59.056 41.667 0.00 0.00 0.00 4.85
287 288 4.299586 TCATAGTCCAACAATTCAGCCA 57.700 40.909 0.00 0.00 0.00 4.75
288 289 4.661222 TCATAGTCCAACAATTCAGCCAA 58.339 39.130 0.00 0.00 0.00 4.52
289 290 5.076182 TCATAGTCCAACAATTCAGCCAAA 58.924 37.500 0.00 0.00 0.00 3.28
290 291 5.183713 TCATAGTCCAACAATTCAGCCAAAG 59.816 40.000 0.00 0.00 0.00 2.77
291 292 2.036346 AGTCCAACAATTCAGCCAAAGC 59.964 45.455 0.00 0.00 40.32 3.51
292 293 2.037901 TCCAACAATTCAGCCAAAGCA 58.962 42.857 0.00 0.00 43.56 3.91
293 294 2.633967 TCCAACAATTCAGCCAAAGCAT 59.366 40.909 0.00 0.00 43.56 3.79
294 295 3.831333 TCCAACAATTCAGCCAAAGCATA 59.169 39.130 0.00 0.00 43.56 3.14
295 296 4.467082 TCCAACAATTCAGCCAAAGCATAT 59.533 37.500 0.00 0.00 43.56 1.78
296 297 5.655974 TCCAACAATTCAGCCAAAGCATATA 59.344 36.000 0.00 0.00 43.56 0.86
297 298 5.981315 CCAACAATTCAGCCAAAGCATATAG 59.019 40.000 0.00 0.00 43.56 1.31
298 299 6.406177 CCAACAATTCAGCCAAAGCATATAGT 60.406 38.462 0.00 0.00 43.56 2.12
299 300 6.382869 ACAATTCAGCCAAAGCATATAGTC 57.617 37.500 0.00 0.00 43.56 2.59
300 301 5.300286 ACAATTCAGCCAAAGCATATAGTCC 59.700 40.000 0.00 0.00 43.56 3.85
301 302 3.111853 TCAGCCAAAGCATATAGTCCG 57.888 47.619 0.00 0.00 43.56 4.79
302 303 2.146342 CAGCCAAAGCATATAGTCCGG 58.854 52.381 0.00 0.00 43.56 5.14
303 304 0.875059 GCCAAAGCATATAGTCCGGC 59.125 55.000 0.00 0.00 39.53 6.13
304 305 1.543429 GCCAAAGCATATAGTCCGGCT 60.543 52.381 0.00 0.00 39.53 5.52
305 306 2.146342 CCAAAGCATATAGTCCGGCTG 58.854 52.381 0.00 0.00 36.58 4.85
306 307 2.485479 CCAAAGCATATAGTCCGGCTGT 60.485 50.000 0.00 0.00 36.58 4.40
307 308 2.802816 CAAAGCATATAGTCCGGCTGTC 59.197 50.000 0.00 0.00 36.58 3.51
308 309 2.002505 AGCATATAGTCCGGCTGTCT 57.997 50.000 0.00 0.00 34.83 3.41
309 310 1.615883 AGCATATAGTCCGGCTGTCTG 59.384 52.381 0.00 0.18 34.83 3.51
310 311 1.337260 GCATATAGTCCGGCTGTCTGG 60.337 57.143 0.00 0.00 40.23 3.86
311 312 2.239400 CATATAGTCCGGCTGTCTGGA 58.761 52.381 0.00 0.00 45.32 3.86
315 316 3.950232 TCCGGCTGTCTGGATACC 58.050 61.111 0.00 0.00 42.73 2.73
316 317 1.760875 TCCGGCTGTCTGGATACCC 60.761 63.158 0.00 0.00 42.73 3.69
317 318 2.808206 CCGGCTGTCTGGATACCCC 61.808 68.421 0.00 0.00 41.45 4.95
318 319 2.808206 CGGCTGTCTGGATACCCCC 61.808 68.421 0.00 0.00 0.00 5.40
319 320 1.384643 GGCTGTCTGGATACCCCCT 60.385 63.158 0.00 0.00 0.00 4.79
320 321 0.988678 GGCTGTCTGGATACCCCCTT 60.989 60.000 0.00 0.00 0.00 3.95
321 322 1.694693 GGCTGTCTGGATACCCCCTTA 60.695 57.143 0.00 0.00 0.00 2.69
322 323 2.339769 GCTGTCTGGATACCCCCTTAT 58.660 52.381 0.00 0.00 0.00 1.73
323 324 2.303311 GCTGTCTGGATACCCCCTTATC 59.697 54.545 0.00 0.00 0.00 1.75
324 325 2.907042 CTGTCTGGATACCCCCTTATCC 59.093 54.545 2.67 2.67 45.63 2.59
338 339 1.691434 CTTATCCAGGACTCCCTCAGC 59.309 57.143 0.00 0.00 42.02 4.26
339 340 0.636647 TATCCAGGACTCCCTCAGCA 59.363 55.000 0.00 0.00 42.02 4.41
340 341 0.690411 ATCCAGGACTCCCTCAGCAG 60.690 60.000 0.00 0.00 42.02 4.24
341 342 2.365586 CCAGGACTCCCTCAGCAGG 61.366 68.421 0.00 0.00 42.02 4.85
350 351 4.106925 CTCAGCAGGGGCCTCCAC 62.107 72.222 0.00 0.00 42.56 4.02
416 418 0.526662 ACGTTTGCGGGTGTTTTGAA 59.473 45.000 0.00 0.00 43.45 2.69
425 427 0.386731 GGTGTTTTGAATGTCCGCGG 60.387 55.000 22.12 22.12 0.00 6.46
448 450 2.041216 GGAGATACACCAACCCCTTGTT 59.959 50.000 0.00 0.00 37.80 2.83
459 461 1.567175 ACCCCTTGTTGTTACCTGTGT 59.433 47.619 0.00 0.00 0.00 3.72
463 465 4.429108 CCCTTGTTGTTACCTGTGTTTTG 58.571 43.478 0.00 0.00 0.00 2.44
575 629 7.061210 GTCACTGAAGATTATATTCCGATCGTG 59.939 40.741 15.09 5.81 0.00 4.35
654 709 2.710220 TCGTCGATCGTTTCTTTCCA 57.290 45.000 15.94 0.00 40.80 3.53
745 816 3.196685 GCCGAGATTATATTCCCAGCTCT 59.803 47.826 0.00 0.00 0.00 4.09
1197 1305 1.671054 CGCATCAACGGAACAGGGT 60.671 57.895 0.00 0.00 0.00 4.34
1198 1306 0.390603 CGCATCAACGGAACAGGGTA 60.391 55.000 0.00 0.00 0.00 3.69
1200 1308 1.338769 GCATCAACGGAACAGGGTACT 60.339 52.381 0.00 0.00 0.00 2.73
1212 1320 2.215942 AGGGTACTGATTTTGTGGCC 57.784 50.000 0.00 0.00 0.00 5.36
1213 1321 1.427368 AGGGTACTGATTTTGTGGCCA 59.573 47.619 0.00 0.00 0.00 5.36
1214 1322 2.042979 AGGGTACTGATTTTGTGGCCAT 59.957 45.455 9.72 0.00 0.00 4.40
1215 1323 2.427095 GGGTACTGATTTTGTGGCCATC 59.573 50.000 9.72 1.58 0.00 3.51
1216 1324 3.356290 GGTACTGATTTTGTGGCCATCT 58.644 45.455 9.72 0.00 0.00 2.90
1217 1325 3.763897 GGTACTGATTTTGTGGCCATCTT 59.236 43.478 9.72 0.00 0.00 2.40
1218 1326 4.142381 GGTACTGATTTTGTGGCCATCTTC 60.142 45.833 9.72 2.82 0.00 2.87
1219 1327 2.827921 ACTGATTTTGTGGCCATCTTCC 59.172 45.455 9.72 0.00 0.00 3.46
1220 1328 1.818060 TGATTTTGTGGCCATCTTCCG 59.182 47.619 9.72 0.00 0.00 4.30
1221 1329 2.091541 GATTTTGTGGCCATCTTCCGA 58.908 47.619 9.72 0.00 0.00 4.55
1222 1330 2.214376 TTTTGTGGCCATCTTCCGAT 57.786 45.000 9.72 0.00 0.00 4.18
1223 1331 1.462616 TTTGTGGCCATCTTCCGATG 58.537 50.000 9.72 0.00 45.31 3.84
1233 1341 2.582436 TTCCGATGGAAGGCCGTC 59.418 61.111 10.61 10.61 45.13 4.79
1234 1342 1.987855 TTCCGATGGAAGGCCGTCT 60.988 57.895 18.54 0.00 46.18 4.18
1235 1343 1.956629 TTCCGATGGAAGGCCGTCTC 61.957 60.000 18.54 8.16 46.18 3.36
1236 1344 2.427245 CCGATGGAAGGCCGTCTCT 61.427 63.158 18.54 5.96 46.18 3.10
1237 1345 1.066587 CGATGGAAGGCCGTCTCTC 59.933 63.158 18.54 13.42 46.18 3.20
1238 1346 1.388065 CGATGGAAGGCCGTCTCTCT 61.388 60.000 18.54 0.89 46.18 3.10
1239 1347 0.387565 GATGGAAGGCCGTCTCTCTC 59.612 60.000 18.54 6.61 45.15 3.20
1240 1348 0.032615 ATGGAAGGCCGTCTCTCTCT 60.033 55.000 18.54 0.00 36.79 3.10
1241 1349 0.624254 TGGAAGGCCGTCTCTCTCTA 59.376 55.000 18.54 0.00 36.79 2.43
1242 1350 1.314730 GGAAGGCCGTCTCTCTCTAG 58.685 60.000 18.54 0.00 0.00 2.43
1243 1351 0.666374 GAAGGCCGTCTCTCTCTAGC 59.334 60.000 11.87 0.00 0.00 3.42
1244 1352 0.257616 AAGGCCGTCTCTCTCTAGCT 59.742 55.000 0.00 0.00 0.00 3.32
1245 1353 0.179029 AGGCCGTCTCTCTCTAGCTC 60.179 60.000 0.00 0.00 0.00 4.09
1246 1354 0.464735 GGCCGTCTCTCTCTAGCTCA 60.465 60.000 0.00 0.00 0.00 4.26
1247 1355 0.661020 GCCGTCTCTCTCTAGCTCAC 59.339 60.000 0.00 0.00 0.00 3.51
1248 1356 1.305201 CCGTCTCTCTCTAGCTCACC 58.695 60.000 0.00 0.00 0.00 4.02
1249 1357 1.305201 CGTCTCTCTCTAGCTCACCC 58.695 60.000 0.00 0.00 0.00 4.61
1250 1358 1.407575 CGTCTCTCTCTAGCTCACCCA 60.408 57.143 0.00 0.00 0.00 4.51
1251 1359 2.021457 GTCTCTCTCTAGCTCACCCAC 58.979 57.143 0.00 0.00 0.00 4.61
1252 1360 1.021202 CTCTCTCTAGCTCACCCACG 58.979 60.000 0.00 0.00 0.00 4.94
1253 1361 0.328592 TCTCTCTAGCTCACCCACGT 59.671 55.000 0.00 0.00 0.00 4.49
1254 1362 0.453793 CTCTCTAGCTCACCCACGTG 59.546 60.000 9.08 9.08 41.72 4.49
1255 1363 1.153745 CTCTAGCTCACCCACGTGC 60.154 63.158 10.91 0.00 40.04 5.34
1256 1364 2.125512 CTAGCTCACCCACGTGCC 60.126 66.667 10.91 0.00 40.04 5.01
1257 1365 2.603473 TAGCTCACCCACGTGCCT 60.603 61.111 10.91 1.51 40.04 4.75
1258 1366 2.172483 CTAGCTCACCCACGTGCCTT 62.172 60.000 10.91 0.00 40.04 4.35
1259 1367 2.449031 TAGCTCACCCACGTGCCTTG 62.449 60.000 10.91 6.49 40.04 3.61
1260 1368 3.357079 CTCACCCACGTGCCTTGC 61.357 66.667 10.91 0.00 40.04 4.01
1261 1369 3.832237 CTCACCCACGTGCCTTGCT 62.832 63.158 10.91 0.00 40.04 3.91
1262 1370 3.663176 CACCCACGTGCCTTGCTG 61.663 66.667 10.91 0.00 32.04 4.41
1356 1470 5.618056 TGAACTTCAACTACGACTACGAT 57.382 39.130 0.00 0.00 42.66 3.73
1378 1492 4.715523 CCTTGCCCCGGAGCGAAA 62.716 66.667 0.73 0.00 34.65 3.46
1569 1683 2.973899 CCGCTGGAGCTGTACACT 59.026 61.111 0.00 0.00 39.32 3.55
1572 1686 1.010935 CGCTGGAGCTGTACACTGTG 61.011 60.000 6.19 6.19 39.32 3.66
1574 1688 0.033920 CTGGAGCTGTACACTGTGCA 59.966 55.000 7.90 0.00 0.00 4.57
1606 1720 0.326927 GGTCGAGGGGTCCAATTTCA 59.673 55.000 0.00 0.00 0.00 2.69
1620 1734 1.863155 ATTTCATCCTGTGCCGGGGT 61.863 55.000 2.18 0.00 0.00 4.95
1935 2064 5.147330 TGATCGTATCCATATGGTGAACC 57.853 43.478 21.28 11.29 36.34 3.62
2006 2135 6.019237 CACTGTATGTTGCTAAGCACTCTATG 60.019 42.308 0.00 0.00 38.71 2.23
2099 2228 6.984740 TTCGAATTATTTGTGAGTTGTTGC 57.015 33.333 0.00 0.00 0.00 4.17
2245 2394 0.443869 CCATTCAGTTTGAGTCGGCG 59.556 55.000 0.00 0.00 0.00 6.46
2252 2401 1.816835 AGTTTGAGTCGGCGAGTGATA 59.183 47.619 23.75 6.05 0.00 2.15
2258 2407 2.460918 AGTCGGCGAGTGATATTTTCG 58.539 47.619 17.75 1.51 37.40 3.46
2376 2531 1.002011 GCTCCCTCCCAGTTGGTTC 60.002 63.158 0.00 0.00 34.77 3.62
2377 2532 1.779061 GCTCCCTCCCAGTTGGTTCA 61.779 60.000 0.00 0.00 34.77 3.18
2384 2539 5.254267 TCCCTCCCAGTTGGTTCATAATTTA 59.746 40.000 0.00 0.00 34.77 1.40
2391 2546 7.341769 CCCAGTTGGTTCATAATTTATCCTTGA 59.658 37.037 0.00 0.00 0.00 3.02
2424 2579 9.777008 ATATTTTTGTATTTTCCCTAACTCCCA 57.223 29.630 0.00 0.00 0.00 4.37
2444 2599 3.252458 CCAAGTCCCAACCTTTTTACTCG 59.748 47.826 0.00 0.00 0.00 4.18
2454 2609 7.095816 CCCAACCTTTTTACTCGCAAAAATAAG 60.096 37.037 3.64 0.00 36.92 1.73
2456 2611 9.453325 CAACCTTTTTACTCGCAAAAATAAGTA 57.547 29.630 3.64 0.00 36.92 2.24
2493 2648 0.534203 TTGTTGTTCACTCCCGCCTC 60.534 55.000 0.00 0.00 0.00 4.70
2502 2657 0.757188 ACTCCCGCCTCCACTATCAG 60.757 60.000 0.00 0.00 0.00 2.90
2507 2662 0.248661 CGCCTCCACTATCAGTGTCG 60.249 60.000 5.65 0.81 44.50 4.35
2517 2672 0.179111 ATCAGTGTCGCCGTACCATG 60.179 55.000 0.00 0.00 0.00 3.66
2520 2675 1.108776 AGTGTCGCCGTACCATGTAT 58.891 50.000 0.00 0.00 0.00 2.29
2522 2677 1.591158 GTGTCGCCGTACCATGTATTG 59.409 52.381 0.00 0.00 0.00 1.90
2636 2791 3.842923 CGGCTCGACCCTCATGCT 61.843 66.667 0.00 0.00 33.26 3.79
2637 2792 2.586792 GGCTCGACCCTCATGCTT 59.413 61.111 0.00 0.00 0.00 3.91
2643 2798 1.009829 CGACCCTCATGCTTAGCAAC 58.990 55.000 12.08 0.00 43.62 4.17
2671 2826 1.972075 GTAGCTCTACCCATCCCTTCC 59.028 57.143 0.00 0.00 0.00 3.46
2683 2838 3.737172 CCTTCCCTGCAAACGCGG 61.737 66.667 12.47 0.00 35.39 6.46
2694 2849 3.600898 AAACGCGGCCCTAGACACC 62.601 63.158 12.47 0.00 0.00 4.16
2708 2863 2.041405 CACCCTCTCCTCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
2709 2864 3.369388 ACCCTCTCCTCCTCCCCC 61.369 72.222 0.00 0.00 0.00 5.40
2768 2923 0.695347 AAGGCAGAGAAAGGGAGGTG 59.305 55.000 0.00 0.00 0.00 4.00
2776 2931 3.003480 GAGAAAGGGAGGTGAACATTCG 58.997 50.000 0.00 0.00 0.00 3.34
2778 2933 0.400213 AAGGGAGGTGAACATTCGCA 59.600 50.000 7.43 0.00 39.38 5.10
2780 2935 1.004745 AGGGAGGTGAACATTCGCAAT 59.995 47.619 7.43 0.00 39.38 3.56
2847 3002 1.470979 GGGAGCATACACGGTACACAG 60.471 57.143 0.00 0.00 0.00 3.66
2848 3003 1.278238 GAGCATACACGGTACACAGC 58.722 55.000 0.00 0.00 0.00 4.40
2861 3016 1.617322 ACACAGCGGTAGTCAAGAGA 58.383 50.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.201989 TGGTAGATCAACTCTTGTAATACTCAT 57.798 33.333 0.00 0.00 35.28 2.90
7 8 8.467598 GTGGTAGATCAACTCTTGTAATACTCA 58.532 37.037 0.00 0.00 35.28 3.41
8 9 7.644551 CGTGGTAGATCAACTCTTGTAATACTC 59.355 40.741 0.00 0.00 35.28 2.59
9 10 7.338703 TCGTGGTAGATCAACTCTTGTAATACT 59.661 37.037 0.00 0.00 35.28 2.12
10 11 7.478322 TCGTGGTAGATCAACTCTTGTAATAC 58.522 38.462 0.00 0.00 35.28 1.89
11 12 7.555195 TCTCGTGGTAGATCAACTCTTGTAATA 59.445 37.037 0.00 0.00 35.28 0.98
12 13 6.377429 TCTCGTGGTAGATCAACTCTTGTAAT 59.623 38.462 0.00 0.00 35.28 1.89
13 14 5.708697 TCTCGTGGTAGATCAACTCTTGTAA 59.291 40.000 0.00 0.00 35.28 2.41
14 15 5.250982 TCTCGTGGTAGATCAACTCTTGTA 58.749 41.667 0.00 0.00 35.28 2.41
15 16 4.079970 TCTCGTGGTAGATCAACTCTTGT 58.920 43.478 0.00 0.00 35.28 3.16
16 17 4.703645 TCTCGTGGTAGATCAACTCTTG 57.296 45.455 0.00 0.00 35.28 3.02
25 26 4.013728 GCCTATCTGATCTCGTGGTAGAT 58.986 47.826 0.00 0.00 38.95 1.98
26 27 3.073209 AGCCTATCTGATCTCGTGGTAGA 59.927 47.826 0.00 0.00 0.00 2.59
27 28 3.417101 AGCCTATCTGATCTCGTGGTAG 58.583 50.000 0.00 0.00 0.00 3.18
28 29 3.510531 AGCCTATCTGATCTCGTGGTA 57.489 47.619 0.00 0.00 0.00 3.25
29 30 2.373335 AGCCTATCTGATCTCGTGGT 57.627 50.000 0.00 0.00 0.00 4.16
30 31 4.551388 GTTTAGCCTATCTGATCTCGTGG 58.449 47.826 0.00 0.00 0.00 4.94
31 32 4.551388 GGTTTAGCCTATCTGATCTCGTG 58.449 47.826 0.00 0.00 0.00 4.35
32 33 3.574826 GGGTTTAGCCTATCTGATCTCGT 59.425 47.826 0.00 0.00 37.43 4.18
33 34 3.829601 AGGGTTTAGCCTATCTGATCTCG 59.170 47.826 0.00 0.00 37.43 4.04
34 35 6.249951 TCTAGGGTTTAGCCTATCTGATCTC 58.750 44.000 8.07 0.00 37.43 2.75
35 36 6.220881 TCTAGGGTTTAGCCTATCTGATCT 57.779 41.667 8.07 0.00 37.43 2.75
36 37 6.071051 CCTTCTAGGGTTTAGCCTATCTGATC 60.071 46.154 8.07 0.00 37.43 2.92
37 38 5.782845 CCTTCTAGGGTTTAGCCTATCTGAT 59.217 44.000 8.07 0.00 37.43 2.90
38 39 5.148502 CCTTCTAGGGTTTAGCCTATCTGA 58.851 45.833 8.07 0.64 37.43 3.27
39 40 4.902448 ACCTTCTAGGGTTTAGCCTATCTG 59.098 45.833 8.07 0.00 40.58 2.90
40 41 5.159139 ACCTTCTAGGGTTTAGCCTATCT 57.841 43.478 8.07 0.00 40.58 1.98
41 42 5.047164 GCTACCTTCTAGGGTTTAGCCTATC 60.047 48.000 8.07 0.00 40.58 2.08
42 43 4.839550 GCTACCTTCTAGGGTTTAGCCTAT 59.160 45.833 8.07 0.00 40.58 2.57
43 44 4.221530 GCTACCTTCTAGGGTTTAGCCTA 58.778 47.826 7.43 7.43 40.58 3.93
44 45 3.039743 GCTACCTTCTAGGGTTTAGCCT 58.960 50.000 5.72 5.72 40.58 4.58
45 46 2.104451 GGCTACCTTCTAGGGTTTAGCC 59.896 54.545 13.25 13.25 46.98 3.93
46 47 3.039743 AGGCTACCTTCTAGGGTTTAGC 58.960 50.000 4.98 4.98 40.58 3.09
47 48 5.246429 CCATAGGCTACCTTCTAGGGTTTAG 59.754 48.000 0.00 0.00 40.58 1.85
48 49 5.152934 CCATAGGCTACCTTCTAGGGTTTA 58.847 45.833 0.00 0.00 40.58 2.01
49 50 3.974642 CCATAGGCTACCTTCTAGGGTTT 59.025 47.826 0.00 0.00 40.58 3.27
50 51 3.051264 ACCATAGGCTACCTTCTAGGGTT 60.051 47.826 0.00 0.00 44.98 4.11
51 52 2.523138 ACCATAGGCTACCTTCTAGGGT 59.477 50.000 0.00 0.00 43.27 4.34
52 53 3.261818 ACCATAGGCTACCTTCTAGGG 57.738 52.381 0.00 0.00 40.58 3.53
53 54 5.580998 TCATACCATAGGCTACCTTCTAGG 58.419 45.833 0.00 0.00 42.49 3.02
54 55 7.179338 ACAATCATACCATAGGCTACCTTCTAG 59.821 40.741 0.00 0.00 34.61 2.43
55 56 7.016914 ACAATCATACCATAGGCTACCTTCTA 58.983 38.462 0.00 0.00 34.61 2.10
56 57 5.846714 ACAATCATACCATAGGCTACCTTCT 59.153 40.000 0.00 0.00 34.61 2.85
57 58 6.115448 ACAATCATACCATAGGCTACCTTC 57.885 41.667 0.00 0.00 34.61 3.46
58 59 6.126478 ACAACAATCATACCATAGGCTACCTT 60.126 38.462 0.00 0.00 34.61 3.50
59 60 5.369699 ACAACAATCATACCATAGGCTACCT 59.630 40.000 0.00 0.00 37.71 3.08
60 61 5.621193 ACAACAATCATACCATAGGCTACC 58.379 41.667 0.00 0.00 0.00 3.18
61 62 8.848474 ATAACAACAATCATACCATAGGCTAC 57.152 34.615 0.00 0.00 0.00 3.58
62 63 9.283768 CAATAACAACAATCATACCATAGGCTA 57.716 33.333 0.00 0.00 0.00 3.93
63 64 7.779798 ACAATAACAACAATCATACCATAGGCT 59.220 33.333 0.00 0.00 0.00 4.58
64 65 7.940850 ACAATAACAACAATCATACCATAGGC 58.059 34.615 0.00 0.00 0.00 3.93
65 66 9.734620 CAACAATAACAACAATCATACCATAGG 57.265 33.333 0.00 0.00 0.00 2.57
78 79 9.944663 GACTCAAGAATAACAACAATAACAACA 57.055 29.630 0.00 0.00 0.00 3.33
79 80 9.394477 GGACTCAAGAATAACAACAATAACAAC 57.606 33.333 0.00 0.00 0.00 3.32
80 81 9.349713 AGGACTCAAGAATAACAACAATAACAA 57.650 29.630 0.00 0.00 0.00 2.83
81 82 8.918202 AGGACTCAAGAATAACAACAATAACA 57.082 30.769 0.00 0.00 0.00 2.41
83 84 9.146984 CGTAGGACTCAAGAATAACAACAATAA 57.853 33.333 0.00 0.00 0.00 1.40
84 85 8.697846 CGTAGGACTCAAGAATAACAACAATA 57.302 34.615 0.00 0.00 0.00 1.90
85 86 7.596749 CGTAGGACTCAAGAATAACAACAAT 57.403 36.000 0.00 0.00 0.00 2.71
123 124 3.260128 CCCCTCCGGTGTCTATATAAACC 59.740 52.174 0.00 0.68 0.00 3.27
124 125 3.260128 CCCCCTCCGGTGTCTATATAAAC 59.740 52.174 0.00 0.00 0.00 2.01
125 126 3.513517 CCCCCTCCGGTGTCTATATAAA 58.486 50.000 0.00 0.00 0.00 1.40
126 127 2.824303 GCCCCCTCCGGTGTCTATATAA 60.824 54.545 0.00 0.00 0.00 0.98
127 128 1.272872 GCCCCCTCCGGTGTCTATATA 60.273 57.143 0.00 0.00 0.00 0.86
128 129 0.544595 GCCCCCTCCGGTGTCTATAT 60.545 60.000 0.00 0.00 0.00 0.86
129 130 1.152398 GCCCCCTCCGGTGTCTATA 60.152 63.158 0.00 0.00 0.00 1.31
130 131 1.661990 TAGCCCCCTCCGGTGTCTAT 61.662 60.000 0.00 0.00 0.00 1.98
131 132 2.294170 CTAGCCCCCTCCGGTGTCTA 62.294 65.000 0.00 0.00 0.00 2.59
132 133 3.680196 TAGCCCCCTCCGGTGTCT 61.680 66.667 0.00 0.00 0.00 3.41
133 134 3.155167 CTAGCCCCCTCCGGTGTC 61.155 72.222 0.00 0.00 0.00 3.67
134 135 4.798682 CCTAGCCCCCTCCGGTGT 62.799 72.222 0.00 0.00 0.00 4.16
137 138 3.399911 TAACCCTAGCCCCCTCCGG 62.400 68.421 0.00 0.00 0.00 5.14
138 139 2.138831 GTAACCCTAGCCCCCTCCG 61.139 68.421 0.00 0.00 0.00 4.63
139 140 1.003835 TGTAACCCTAGCCCCCTCC 59.996 63.158 0.00 0.00 0.00 4.30
140 141 1.683418 CGTGTAACCCTAGCCCCCTC 61.683 65.000 0.00 0.00 0.00 4.30
141 142 1.688187 CGTGTAACCCTAGCCCCCT 60.688 63.158 0.00 0.00 0.00 4.79
142 143 2.738938 CCGTGTAACCCTAGCCCCC 61.739 68.421 0.00 0.00 0.00 5.40
143 144 1.683418 CTCCGTGTAACCCTAGCCCC 61.683 65.000 0.00 0.00 0.00 5.80
144 145 0.974525 ACTCCGTGTAACCCTAGCCC 60.975 60.000 0.00 0.00 0.00 5.19
145 146 0.459078 GACTCCGTGTAACCCTAGCC 59.541 60.000 0.00 0.00 0.00 3.93
146 147 0.100146 CGACTCCGTGTAACCCTAGC 59.900 60.000 0.00 0.00 0.00 3.42
147 148 0.737219 CCGACTCCGTGTAACCCTAG 59.263 60.000 0.00 0.00 0.00 3.02
148 149 0.038166 ACCGACTCCGTGTAACCCTA 59.962 55.000 0.00 0.00 0.00 3.53
149 150 0.829182 AACCGACTCCGTGTAACCCT 60.829 55.000 0.00 0.00 0.00 4.34
150 151 0.033920 AAACCGACTCCGTGTAACCC 59.966 55.000 0.00 0.00 0.00 4.11
151 152 2.288152 TGTAAACCGACTCCGTGTAACC 60.288 50.000 0.00 0.00 0.00 2.85
152 153 2.982470 CTGTAAACCGACTCCGTGTAAC 59.018 50.000 0.00 0.00 0.00 2.50
153 154 2.884012 TCTGTAAACCGACTCCGTGTAA 59.116 45.455 0.00 0.00 0.00 2.41
154 155 2.485426 CTCTGTAAACCGACTCCGTGTA 59.515 50.000 0.00 0.00 0.00 2.90
155 156 1.268899 CTCTGTAAACCGACTCCGTGT 59.731 52.381 0.00 0.00 0.00 4.49
156 157 1.268899 ACTCTGTAAACCGACTCCGTG 59.731 52.381 0.00 0.00 0.00 4.94
157 158 1.613836 ACTCTGTAAACCGACTCCGT 58.386 50.000 0.00 0.00 0.00 4.69
158 159 2.097142 CCTACTCTGTAAACCGACTCCG 59.903 54.545 0.00 0.00 0.00 4.63
159 160 3.350833 TCCTACTCTGTAAACCGACTCC 58.649 50.000 0.00 0.00 0.00 3.85
160 161 3.377798 CCTCCTACTCTGTAAACCGACTC 59.622 52.174 0.00 0.00 0.00 3.36
161 162 3.245193 ACCTCCTACTCTGTAAACCGACT 60.245 47.826 0.00 0.00 0.00 4.18
162 163 3.087781 ACCTCCTACTCTGTAAACCGAC 58.912 50.000 0.00 0.00 0.00 4.79
163 164 3.009916 AGACCTCCTACTCTGTAAACCGA 59.990 47.826 0.00 0.00 0.00 4.69
164 165 3.354467 AGACCTCCTACTCTGTAAACCG 58.646 50.000 0.00 0.00 0.00 4.44
165 166 5.259632 TGTAGACCTCCTACTCTGTAAACC 58.740 45.833 0.00 0.00 46.19 3.27
166 167 6.829811 AGATGTAGACCTCCTACTCTGTAAAC 59.170 42.308 0.00 0.00 46.19 2.01
167 168 6.829298 CAGATGTAGACCTCCTACTCTGTAAA 59.171 42.308 15.47 0.00 46.19 2.01
168 169 6.158169 TCAGATGTAGACCTCCTACTCTGTAA 59.842 42.308 19.09 8.56 46.19 2.41
169 170 5.666265 TCAGATGTAGACCTCCTACTCTGTA 59.334 44.000 19.09 11.08 46.19 2.74
170 171 4.475381 TCAGATGTAGACCTCCTACTCTGT 59.525 45.833 19.09 0.00 46.19 3.41
171 172 5.042463 TCAGATGTAGACCTCCTACTCTG 57.958 47.826 16.53 16.53 46.19 3.35
172 173 5.718801 TTCAGATGTAGACCTCCTACTCT 57.281 43.478 0.00 0.00 46.19 3.24
173 174 5.180492 CGATTCAGATGTAGACCTCCTACTC 59.820 48.000 0.00 0.00 46.19 2.59
174 175 5.067273 CGATTCAGATGTAGACCTCCTACT 58.933 45.833 0.00 0.00 46.19 2.57
175 176 4.320641 GCGATTCAGATGTAGACCTCCTAC 60.321 50.000 0.00 0.00 46.21 3.18
176 177 3.821600 GCGATTCAGATGTAGACCTCCTA 59.178 47.826 0.00 0.00 0.00 2.94
177 178 2.625790 GCGATTCAGATGTAGACCTCCT 59.374 50.000 0.00 0.00 0.00 3.69
178 179 2.288518 GGCGATTCAGATGTAGACCTCC 60.289 54.545 0.00 0.00 0.00 4.30
179 180 2.362397 TGGCGATTCAGATGTAGACCTC 59.638 50.000 0.00 0.00 0.00 3.85
180 181 2.388735 TGGCGATTCAGATGTAGACCT 58.611 47.619 0.00 0.00 0.00 3.85
181 182 2.890808 TGGCGATTCAGATGTAGACC 57.109 50.000 0.00 0.00 0.00 3.85
182 183 2.541762 GCTTGGCGATTCAGATGTAGAC 59.458 50.000 0.00 0.00 0.00 2.59
183 184 2.432146 AGCTTGGCGATTCAGATGTAGA 59.568 45.455 0.00 0.00 0.00 2.59
184 185 2.831333 AGCTTGGCGATTCAGATGTAG 58.169 47.619 0.00 0.00 0.00 2.74
185 186 2.938451 CAAGCTTGGCGATTCAGATGTA 59.062 45.455 19.14 0.00 0.00 2.29
186 187 1.741706 CAAGCTTGGCGATTCAGATGT 59.258 47.619 19.14 0.00 0.00 3.06
187 188 1.533338 GCAAGCTTGGCGATTCAGATG 60.533 52.381 27.10 0.00 0.00 2.90
188 189 0.737219 GCAAGCTTGGCGATTCAGAT 59.263 50.000 27.10 0.00 0.00 2.90
189 190 1.308069 GGCAAGCTTGGCGATTCAGA 61.308 55.000 33.68 0.00 43.97 3.27
190 191 1.138247 GGCAAGCTTGGCGATTCAG 59.862 57.895 33.68 3.72 43.97 3.02
191 192 3.277133 GGCAAGCTTGGCGATTCA 58.723 55.556 33.68 0.00 43.97 2.57
198 199 2.956987 CGTGGAAGGCAAGCTTGG 59.043 61.111 27.10 9.80 0.00 3.61
207 208 1.266989 GAACTTTCCTTGCGTGGAAGG 59.733 52.381 13.42 13.42 45.58 3.46
208 209 1.266989 GGAACTTTCCTTGCGTGGAAG 59.733 52.381 9.65 7.51 45.58 3.46
209 210 1.314730 GGAACTTTCCTTGCGTGGAA 58.685 50.000 6.18 6.18 44.11 3.53
210 211 3.015516 GGAACTTTCCTTGCGTGGA 57.984 52.632 0.34 0.00 44.11 4.02
228 229 1.884075 TTCGTCCCGTGTCCAGGATG 61.884 60.000 0.00 0.00 40.04 3.51
229 230 1.605058 CTTCGTCCCGTGTCCAGGAT 61.605 60.000 0.00 0.00 33.88 3.24
230 231 2.203523 TTCGTCCCGTGTCCAGGA 60.204 61.111 0.00 0.00 0.00 3.86
231 232 2.261671 CTTCGTCCCGTGTCCAGG 59.738 66.667 0.00 0.00 0.00 4.45
232 233 1.080705 GACTTCGTCCCGTGTCCAG 60.081 63.158 0.00 0.00 0.00 3.86
233 234 1.111116 AAGACTTCGTCCCGTGTCCA 61.111 55.000 0.00 0.00 34.39 4.02
234 235 0.388263 GAAGACTTCGTCCCGTGTCC 60.388 60.000 0.00 0.00 34.39 4.02
235 236 0.313043 TGAAGACTTCGTCCCGTGTC 59.687 55.000 10.56 0.00 32.18 3.67
236 237 0.748450 TTGAAGACTTCGTCCCGTGT 59.252 50.000 10.56 0.00 32.18 4.49
237 238 1.993370 GATTGAAGACTTCGTCCCGTG 59.007 52.381 10.56 0.00 32.18 4.94
238 239 1.893801 AGATTGAAGACTTCGTCCCGT 59.106 47.619 10.56 0.00 32.18 5.28
239 240 2.656560 AGATTGAAGACTTCGTCCCG 57.343 50.000 10.56 0.00 32.18 5.14
240 241 3.665190 ACAAGATTGAAGACTTCGTCCC 58.335 45.455 10.56 0.53 32.18 4.46
241 242 6.334202 AGATACAAGATTGAAGACTTCGTCC 58.666 40.000 10.56 2.18 32.18 4.79
242 243 7.542477 TGAAGATACAAGATTGAAGACTTCGTC 59.458 37.037 10.56 10.67 34.37 4.20
243 244 7.378966 TGAAGATACAAGATTGAAGACTTCGT 58.621 34.615 10.56 1.87 34.37 3.85
244 245 7.818493 TGAAGATACAAGATTGAAGACTTCG 57.182 36.000 10.56 0.00 34.37 3.79
248 249 9.255304 GGACTATGAAGATACAAGATTGAAGAC 57.745 37.037 0.00 0.00 0.00 3.01
249 250 8.981659 TGGACTATGAAGATACAAGATTGAAGA 58.018 33.333 0.00 0.00 0.00 2.87
250 251 9.605275 TTGGACTATGAAGATACAAGATTGAAG 57.395 33.333 0.00 0.00 0.00 3.02
251 252 9.383519 GTTGGACTATGAAGATACAAGATTGAA 57.616 33.333 0.00 0.00 0.00 2.69
252 253 8.539544 TGTTGGACTATGAAGATACAAGATTGA 58.460 33.333 0.00 0.00 0.00 2.57
253 254 8.722480 TGTTGGACTATGAAGATACAAGATTG 57.278 34.615 0.00 0.00 0.00 2.67
254 255 9.911788 ATTGTTGGACTATGAAGATACAAGATT 57.088 29.630 0.00 0.00 0.00 2.40
255 256 9.911788 AATTGTTGGACTATGAAGATACAAGAT 57.088 29.630 0.00 0.00 0.00 2.40
256 257 9.383519 GAATTGTTGGACTATGAAGATACAAGA 57.616 33.333 0.00 0.00 0.00 3.02
257 258 9.166173 TGAATTGTTGGACTATGAAGATACAAG 57.834 33.333 0.00 0.00 0.00 3.16
258 259 9.166173 CTGAATTGTTGGACTATGAAGATACAA 57.834 33.333 0.00 0.00 0.00 2.41
259 260 7.280876 GCTGAATTGTTGGACTATGAAGATACA 59.719 37.037 0.00 0.00 0.00 2.29
260 261 7.254932 GGCTGAATTGTTGGACTATGAAGATAC 60.255 40.741 0.00 0.00 0.00 2.24
261 262 6.767902 GGCTGAATTGTTGGACTATGAAGATA 59.232 38.462 0.00 0.00 0.00 1.98
262 263 5.591877 GGCTGAATTGTTGGACTATGAAGAT 59.408 40.000 0.00 0.00 0.00 2.40
263 264 4.943705 GGCTGAATTGTTGGACTATGAAGA 59.056 41.667 0.00 0.00 0.00 2.87
264 265 4.701651 TGGCTGAATTGTTGGACTATGAAG 59.298 41.667 0.00 0.00 0.00 3.02
265 266 4.661222 TGGCTGAATTGTTGGACTATGAA 58.339 39.130 0.00 0.00 0.00 2.57
266 267 4.299586 TGGCTGAATTGTTGGACTATGA 57.700 40.909 0.00 0.00 0.00 2.15
267 268 5.389859 TTTGGCTGAATTGTTGGACTATG 57.610 39.130 0.00 0.00 0.00 2.23
268 269 4.082026 GCTTTGGCTGAATTGTTGGACTAT 60.082 41.667 0.00 0.00 35.22 2.12
269 270 3.255642 GCTTTGGCTGAATTGTTGGACTA 59.744 43.478 0.00 0.00 35.22 2.59
270 271 2.036346 GCTTTGGCTGAATTGTTGGACT 59.964 45.455 0.00 0.00 35.22 3.85
271 272 2.224018 TGCTTTGGCTGAATTGTTGGAC 60.224 45.455 0.00 0.00 39.59 4.02
272 273 2.037901 TGCTTTGGCTGAATTGTTGGA 58.962 42.857 0.00 0.00 39.59 3.53
273 274 2.529780 TGCTTTGGCTGAATTGTTGG 57.470 45.000 0.00 0.00 39.59 3.77
274 275 6.567050 ACTATATGCTTTGGCTGAATTGTTG 58.433 36.000 0.00 0.00 39.59 3.33
275 276 6.183360 GGACTATATGCTTTGGCTGAATTGTT 60.183 38.462 0.00 0.00 39.59 2.83
276 277 5.300286 GGACTATATGCTTTGGCTGAATTGT 59.700 40.000 0.00 0.00 39.59 2.71
277 278 5.561532 CGGACTATATGCTTTGGCTGAATTG 60.562 44.000 0.00 0.00 39.59 2.32
278 279 4.516698 CGGACTATATGCTTTGGCTGAATT 59.483 41.667 0.00 0.00 39.59 2.17
279 280 4.067896 CGGACTATATGCTTTGGCTGAAT 58.932 43.478 0.00 0.00 39.59 2.57
280 281 3.466836 CGGACTATATGCTTTGGCTGAA 58.533 45.455 0.00 0.00 39.59 3.02
281 282 2.224281 CCGGACTATATGCTTTGGCTGA 60.224 50.000 0.00 0.00 39.59 4.26
282 283 2.146342 CCGGACTATATGCTTTGGCTG 58.854 52.381 0.00 0.00 39.59 4.85
283 284 1.543429 GCCGGACTATATGCTTTGGCT 60.543 52.381 5.05 0.00 38.22 4.75
284 285 0.875059 GCCGGACTATATGCTTTGGC 59.125 55.000 5.05 0.00 39.26 4.52
285 286 2.146342 CAGCCGGACTATATGCTTTGG 58.854 52.381 5.05 0.00 30.08 3.28
286 287 2.802816 GACAGCCGGACTATATGCTTTG 59.197 50.000 5.05 0.00 30.08 2.77
287 288 2.700897 AGACAGCCGGACTATATGCTTT 59.299 45.455 5.05 0.00 30.08 3.51
288 289 2.036475 CAGACAGCCGGACTATATGCTT 59.964 50.000 5.05 0.00 30.08 3.91
289 290 1.615883 CAGACAGCCGGACTATATGCT 59.384 52.381 5.05 0.00 33.52 3.79
290 291 1.337260 CCAGACAGCCGGACTATATGC 60.337 57.143 5.05 0.00 0.00 3.14
291 292 2.239400 TCCAGACAGCCGGACTATATG 58.761 52.381 5.05 0.00 0.00 1.78
292 293 2.677542 TCCAGACAGCCGGACTATAT 57.322 50.000 5.05 0.00 0.00 0.86
293 294 2.677542 ATCCAGACAGCCGGACTATA 57.322 50.000 5.05 0.00 33.05 1.31
294 295 2.240279 GTATCCAGACAGCCGGACTAT 58.760 52.381 5.05 0.00 33.05 2.12
295 296 1.688772 GTATCCAGACAGCCGGACTA 58.311 55.000 5.05 0.00 33.05 2.59
296 297 1.043673 GGTATCCAGACAGCCGGACT 61.044 60.000 5.05 0.00 33.05 3.85
297 298 1.442148 GGTATCCAGACAGCCGGAC 59.558 63.158 5.05 0.00 33.05 4.79
298 299 1.760875 GGGTATCCAGACAGCCGGA 60.761 63.158 5.05 0.00 35.27 5.14
299 300 2.808206 GGGGTATCCAGACAGCCGG 61.808 68.421 0.00 0.00 32.95 6.13
300 301 2.808206 GGGGGTATCCAGACAGCCG 61.808 68.421 0.00 0.00 37.22 5.52
301 302 0.988678 AAGGGGGTATCCAGACAGCC 60.989 60.000 0.00 0.00 37.22 4.85
302 303 1.802553 TAAGGGGGTATCCAGACAGC 58.197 55.000 0.00 0.00 37.22 4.40
303 304 2.907042 GGATAAGGGGGTATCCAGACAG 59.093 54.545 6.40 0.00 46.18 3.51
304 305 2.986050 GGATAAGGGGGTATCCAGACA 58.014 52.381 6.40 0.00 46.18 3.41
318 319 1.691434 GCTGAGGGAGTCCTGGATAAG 59.309 57.143 9.58 0.28 45.05 1.73
319 320 1.008327 TGCTGAGGGAGTCCTGGATAA 59.992 52.381 9.58 0.00 45.05 1.75
320 321 0.636647 TGCTGAGGGAGTCCTGGATA 59.363 55.000 9.58 0.00 45.05 2.59
321 322 0.690411 CTGCTGAGGGAGTCCTGGAT 60.690 60.000 9.58 0.00 45.05 3.41
322 323 1.305633 CTGCTGAGGGAGTCCTGGA 60.306 63.158 9.58 0.00 45.05 3.86
323 324 2.365586 CCTGCTGAGGGAGTCCTGG 61.366 68.421 9.58 0.00 45.05 4.45
324 325 3.307445 CCTGCTGAGGGAGTCCTG 58.693 66.667 9.58 0.00 45.05 3.86
333 334 4.106925 GTGGAGGCCCCTGCTGAG 62.107 72.222 0.00 0.00 37.74 3.35
345 346 2.137177 AAATGTGGACCCCCGTGGAG 62.137 60.000 0.00 0.00 38.00 3.86
346 347 2.157452 AAATGTGGACCCCCGTGGA 61.157 57.895 0.00 0.00 38.00 4.02
347 348 1.976474 CAAATGTGGACCCCCGTGG 60.976 63.158 0.00 0.00 41.37 4.94
348 349 0.323360 ATCAAATGTGGACCCCCGTG 60.323 55.000 0.00 0.00 34.29 4.94
349 350 0.323360 CATCAAATGTGGACCCCCGT 60.323 55.000 0.00 0.00 34.29 5.28
350 351 0.034574 TCATCAAATGTGGACCCCCG 60.035 55.000 0.00 0.00 34.29 5.73
351 352 1.272425 TGTCATCAAATGTGGACCCCC 60.272 52.381 0.00 0.00 0.00 5.40
387 388 1.720694 CCGCAAACGTCCAACCAAGT 61.721 55.000 0.00 0.00 37.70 3.16
416 418 1.040893 TGTATCTCCACCGCGGACAT 61.041 55.000 35.90 17.10 39.64 3.06
425 427 1.286248 AGGGGTTGGTGTATCTCCAC 58.714 55.000 0.00 0.00 34.45 4.02
448 450 2.826128 TGGTTGCAAAACACAGGTAACA 59.174 40.909 0.00 0.00 39.66 2.41
459 461 4.068599 TGTCATATCGTCTGGTTGCAAAA 58.931 39.130 0.00 0.00 0.00 2.44
463 465 3.457234 TGATGTCATATCGTCTGGTTGC 58.543 45.455 0.00 0.00 0.00 4.17
616 671 3.907894 GATGACCTACTCATCGTCTCC 57.092 52.381 0.00 0.00 44.71 3.71
654 709 2.923035 CCACCCGGTCTGGTCTGT 60.923 66.667 0.00 0.00 36.12 3.41
793 864 3.139077 CCGAATTTATAGAGGGTGCCAC 58.861 50.000 0.00 0.00 0.00 5.01
1009 1080 6.296803 TCAGTCGTGTATGATAGGTATCTGT 58.703 40.000 0.00 0.00 33.88 3.41
1014 1085 8.255206 ACAAAATTCAGTCGTGTATGATAGGTA 58.745 33.333 0.00 0.00 0.00 3.08
1016 1087 7.492669 AGACAAAATTCAGTCGTGTATGATAGG 59.507 37.037 5.02 0.00 39.67 2.57
1020 1091 6.887368 CAAGACAAAATTCAGTCGTGTATGA 58.113 36.000 13.96 0.00 38.73 2.15
1072 1144 1.198713 GGATTGAGCCTGGAGAGACA 58.801 55.000 0.00 0.00 0.00 3.41
1074 1146 1.045350 CCGGATTGAGCCTGGAGAGA 61.045 60.000 0.00 0.00 0.00 3.10
1197 1305 4.016444 GGAAGATGGCCACAAAATCAGTA 58.984 43.478 8.16 0.00 0.00 2.74
1198 1306 2.827921 GGAAGATGGCCACAAAATCAGT 59.172 45.455 8.16 0.00 0.00 3.41
1200 1308 1.818060 CGGAAGATGGCCACAAAATCA 59.182 47.619 8.16 0.00 0.00 2.57
1201 1309 2.091541 TCGGAAGATGGCCACAAAATC 58.908 47.619 8.16 0.00 33.31 2.17
1203 1311 3.735704 TCGGAAGATGGCCACAAAA 57.264 47.368 8.16 0.00 33.31 2.44
1216 1324 1.956629 GAGACGGCCTTCCATCGGAA 61.957 60.000 5.45 0.00 39.66 4.30
1217 1325 2.363795 AGACGGCCTTCCATCGGA 60.364 61.111 5.45 0.00 28.01 4.55
1218 1326 2.107141 GAGACGGCCTTCCATCGG 59.893 66.667 5.45 0.00 28.01 4.18
1219 1327 1.066587 GAGAGACGGCCTTCCATCG 59.933 63.158 5.45 0.00 28.01 3.84
1220 1328 0.387565 GAGAGAGACGGCCTTCCATC 59.612 60.000 5.45 4.45 0.00 3.51
1221 1329 0.032615 AGAGAGAGACGGCCTTCCAT 60.033 55.000 5.45 0.00 0.00 3.41
1222 1330 0.624254 TAGAGAGAGACGGCCTTCCA 59.376 55.000 5.45 0.00 0.00 3.53
1223 1331 1.314730 CTAGAGAGAGACGGCCTTCC 58.685 60.000 5.45 0.00 0.00 3.46
1224 1332 0.666374 GCTAGAGAGAGACGGCCTTC 59.334 60.000 0.00 0.00 0.00 3.46
1225 1333 0.257616 AGCTAGAGAGAGACGGCCTT 59.742 55.000 0.00 0.00 0.00 4.35
1226 1334 0.179029 GAGCTAGAGAGAGACGGCCT 60.179 60.000 0.00 0.00 0.00 5.19
1227 1335 0.464735 TGAGCTAGAGAGAGACGGCC 60.465 60.000 0.00 0.00 0.00 6.13
1228 1336 0.661020 GTGAGCTAGAGAGAGACGGC 59.339 60.000 0.00 0.00 0.00 5.68
1229 1337 1.305201 GGTGAGCTAGAGAGAGACGG 58.695 60.000 0.00 0.00 0.00 4.79
1230 1338 1.305201 GGGTGAGCTAGAGAGAGACG 58.695 60.000 0.00 0.00 0.00 4.18
1231 1339 2.021457 GTGGGTGAGCTAGAGAGAGAC 58.979 57.143 0.00 0.00 0.00 3.36
1232 1340 1.407575 CGTGGGTGAGCTAGAGAGAGA 60.408 57.143 0.00 0.00 0.00 3.10
1233 1341 1.021202 CGTGGGTGAGCTAGAGAGAG 58.979 60.000 0.00 0.00 0.00 3.20
1234 1342 0.328592 ACGTGGGTGAGCTAGAGAGA 59.671 55.000 0.00 0.00 0.00 3.10
1235 1343 2.875188 ACGTGGGTGAGCTAGAGAG 58.125 57.895 0.00 0.00 0.00 3.20
1277 1385 2.657237 CGCCTTCCGGAGTGTCTT 59.343 61.111 3.34 0.00 0.00 3.01
1278 1386 4.070552 GCGCCTTCCGGAGTGTCT 62.071 66.667 3.34 0.00 37.44 3.41
1601 1715 1.076777 CCCCGGCACAGGATGAAAT 60.077 57.895 0.00 0.00 39.69 2.17
1606 1720 2.933287 TTCACCCCGGCACAGGAT 60.933 61.111 0.00 0.00 0.00 3.24
1736 1850 4.891727 ATCGGGATGCGTCGGTGC 62.892 66.667 0.00 0.00 0.00 5.01
1737 1851 2.961721 CATCGGGATGCGTCGGTG 60.962 66.667 0.00 0.00 31.39 4.94
1738 1852 4.221422 CCATCGGGATGCGTCGGT 62.221 66.667 3.10 0.00 37.49 4.69
1837 1966 2.825836 GTTCATGGCCGGCAGGAG 60.826 66.667 30.85 14.92 41.02 3.69
1935 2064 2.891580 ACAGCTATACCCATAGACACGG 59.108 50.000 0.00 0.00 36.96 4.94
2092 2221 4.271291 AGAAGAGTTCTCTTTCGCAACAAC 59.729 41.667 14.96 1.53 34.07 3.32
2245 2394 5.035443 ACGACAGTAGCGAAAATATCACTC 58.965 41.667 0.00 0.00 0.00 3.51
2252 2401 2.288579 TGACCACGACAGTAGCGAAAAT 60.289 45.455 0.00 0.00 0.00 1.82
2258 2407 1.801913 CGCTGACCACGACAGTAGC 60.802 63.158 0.00 0.00 37.64 3.58
2312 2462 3.685435 CACTGAATGTGGGCCCAC 58.315 61.111 42.81 42.81 46.33 4.61
2423 2578 3.304458 GCGAGTAAAAAGGTTGGGACTTG 60.304 47.826 0.00 0.00 0.00 3.16
2424 2579 2.882761 GCGAGTAAAAAGGTTGGGACTT 59.117 45.455 0.00 0.00 0.00 3.01
2454 2609 8.837389 ACAACAAAGAGAAGAAATGGTTAGTAC 58.163 33.333 0.00 0.00 0.00 2.73
2456 2611 7.881775 ACAACAAAGAGAAGAAATGGTTAGT 57.118 32.000 0.00 0.00 0.00 2.24
2476 2631 1.671379 GGAGGCGGGAGTGAACAAC 60.671 63.158 0.00 0.00 0.00 3.32
2502 2657 1.591158 CAATACATGGTACGGCGACAC 59.409 52.381 16.62 11.08 0.00 3.67
2507 2662 3.004171 TGTGTTCAATACATGGTACGGC 58.996 45.455 0.00 0.00 39.39 5.68
2517 2672 4.928661 AAGATGCTCGTGTGTTCAATAC 57.071 40.909 0.00 0.00 0.00 1.89
2520 2675 3.607422 CAAAGATGCTCGTGTGTTCAA 57.393 42.857 0.00 0.00 0.00 2.69
2566 2721 2.798148 GAATCCCCGACCGCAACACT 62.798 60.000 0.00 0.00 0.00 3.55
2590 2745 2.586792 GAGGCAGCGGTGGAGATT 59.413 61.111 17.54 0.00 0.00 2.40
2636 2791 1.272490 AGCTACACTCTGCGTTGCTAA 59.728 47.619 0.00 0.00 42.37 3.09
2637 2792 0.888619 AGCTACACTCTGCGTTGCTA 59.111 50.000 0.00 0.00 42.37 3.49
2683 2838 0.757561 GAGGAGAGGGTGTCTAGGGC 60.758 65.000 0.00 0.00 34.71 5.19
2694 2849 2.285180 CAGGGGGAGGAGGAGAGG 59.715 72.222 0.00 0.00 0.00 3.69
2708 2863 2.159819 CTCACCTCACGGACCACAGG 62.160 65.000 0.00 0.00 0.00 4.00
2709 2864 1.179174 TCTCACCTCACGGACCACAG 61.179 60.000 0.00 0.00 0.00 3.66
2754 2909 3.307059 CGAATGTTCACCTCCCTTTCTCT 60.307 47.826 0.00 0.00 0.00 3.10
2768 2923 2.285834 CCTACGAGCATTGCGAATGTTC 60.286 50.000 2.38 12.41 43.23 3.18
2776 2931 1.026718 AAGCCACCTACGAGCATTGC 61.027 55.000 0.00 0.00 0.00 3.56
2778 2933 0.392998 CCAAGCCACCTACGAGCATT 60.393 55.000 0.00 0.00 0.00 3.56
2780 2935 2.662596 CCAAGCCACCTACGAGCA 59.337 61.111 0.00 0.00 0.00 4.26
2847 3002 3.391049 ACACTTTTCTCTTGACTACCGC 58.609 45.455 0.00 0.00 0.00 5.68
2848 3003 5.522460 TCAAACACTTTTCTCTTGACTACCG 59.478 40.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.