Multiple sequence alignment - TraesCS5B01G256000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G256000 chr5B 100.000 3806 0 0 1 3806 438794321 438798126 0.000000e+00 7029.0
1 TraesCS5B01G256000 chr5B 87.952 83 7 3 144 223 315165269 315165351 1.130000e-15 95.3
2 TraesCS5B01G256000 chr5B 90.541 74 4 2 153 223 315165351 315165278 1.130000e-15 95.3
3 TraesCS5B01G256000 chr5B 86.207 87 6 3 142 223 271145799 271145884 5.240000e-14 89.8
4 TraesCS5B01G256000 chr5B 91.304 46 4 0 358 403 391397353 391397308 3.170000e-06 63.9
5 TraesCS5B01G256000 chr5D 89.966 3279 236 62 573 3804 369577598 369580830 0.000000e+00 4146.0
6 TraesCS5B01G256000 chr5A 89.604 2876 208 50 988 3806 472110645 472113486 0.000000e+00 3570.0
7 TraesCS5B01G256000 chr5A 77.851 1061 151 51 2774 3806 472115728 472116732 7.090000e-162 580.0
8 TraesCS5B01G256000 chr5A 84.876 443 45 11 573 996 472110174 472110613 9.770000e-116 427.0
9 TraesCS5B01G256000 chr5A 78.613 346 59 12 1077 1416 38790202 38790538 8.280000e-52 215.0
10 TraesCS5B01G256000 chr3B 85.479 1701 229 14 1027 2721 166655071 166653383 0.000000e+00 1757.0
11 TraesCS5B01G256000 chr3B 85.385 130 14 3 1 130 720950724 720950600 3.090000e-26 130.0
12 TraesCS5B01G256000 chr3D 85.118 1700 237 11 1027 2721 114204803 114206491 0.000000e+00 1724.0
13 TraesCS5B01G256000 chr3A 85.126 1701 235 14 1027 2721 110069489 110071177 0.000000e+00 1724.0
14 TraesCS5B01G256000 chr3A 86.905 84 7 3 144 226 478807298 478807218 1.460000e-14 91.6
15 TraesCS5B01G256000 chr4A 87.642 615 61 7 710 1314 153317158 153317767 0.000000e+00 701.0
16 TraesCS5B01G256000 chr4A 87.500 608 66 8 714 1314 92299162 92299766 0.000000e+00 693.0
17 TraesCS5B01G256000 chr4A 90.667 75 3 3 153 226 562402192 562402121 3.130000e-16 97.1
18 TraesCS5B01G256000 chr4A 88.462 78 6 2 142 218 69326888 69326963 1.460000e-14 91.6
19 TraesCS5B01G256000 chr2A 86.907 611 61 8 710 1314 523848474 523847877 0.000000e+00 667.0
20 TraesCS5B01G256000 chr7A 84.124 611 63 9 710 1314 468325337 468324755 9.230000e-156 560.0
21 TraesCS5B01G256000 chr7A 87.059 85 3 5 147 223 3536411 3536495 5.240000e-14 89.8
22 TraesCS5B01G256000 chr2B 72.627 1717 378 74 1052 2719 639027476 639025803 2.060000e-132 483.0
23 TraesCS5B01G256000 chr1D 89.024 82 5 4 143 223 8284312 8284234 8.700000e-17 99.0
24 TraesCS5B01G256000 chr1A 92.754 69 3 2 151 218 353252721 353252788 8.700000e-17 99.0
25 TraesCS5B01G256000 chr6D 80.198 101 19 1 1361 1460 346071291 346071191 1.470000e-09 75.0
26 TraesCS5B01G256000 chr7B 97.143 35 0 1 3638 3671 477622261 477622295 1.480000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G256000 chr5B 438794321 438798126 3805 False 7029.000000 7029 100.000000 1 3806 1 chr5B.!!$F3 3805
1 TraesCS5B01G256000 chr5D 369577598 369580830 3232 False 4146.000000 4146 89.966000 573 3804 1 chr5D.!!$F1 3231
2 TraesCS5B01G256000 chr5A 472110174 472116732 6558 False 1525.666667 3570 84.110333 573 3806 3 chr5A.!!$F2 3233
3 TraesCS5B01G256000 chr3B 166653383 166655071 1688 True 1757.000000 1757 85.479000 1027 2721 1 chr3B.!!$R1 1694
4 TraesCS5B01G256000 chr3D 114204803 114206491 1688 False 1724.000000 1724 85.118000 1027 2721 1 chr3D.!!$F1 1694
5 TraesCS5B01G256000 chr3A 110069489 110071177 1688 False 1724.000000 1724 85.126000 1027 2721 1 chr3A.!!$F1 1694
6 TraesCS5B01G256000 chr4A 153317158 153317767 609 False 701.000000 701 87.642000 710 1314 1 chr4A.!!$F3 604
7 TraesCS5B01G256000 chr4A 92299162 92299766 604 False 693.000000 693 87.500000 714 1314 1 chr4A.!!$F2 600
8 TraesCS5B01G256000 chr2A 523847877 523848474 597 True 667.000000 667 86.907000 710 1314 1 chr2A.!!$R1 604
9 TraesCS5B01G256000 chr7A 468324755 468325337 582 True 560.000000 560 84.124000 710 1314 1 chr7A.!!$R1 604
10 TraesCS5B01G256000 chr2B 639025803 639027476 1673 True 483.000000 483 72.627000 1052 2719 1 chr2B.!!$R1 1667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 893 0.25077 AAGGAAGAAGACAACGGGGC 60.251 55.0 0.0 0.0 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2823 2915 1.753078 TGACCCAGATCGAGACGGG 60.753 63.158 12.95 12.95 44.88 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.962569 GGCCTCTTTTTGCCGTCC 59.037 61.111 0.00 0.00 38.00 4.79
20 21 2.636412 GGCCTCTTTTTGCCGTCCC 61.636 63.158 0.00 0.00 38.00 4.46
21 22 2.636412 GCCTCTTTTTGCCGTCCCC 61.636 63.158 0.00 0.00 0.00 4.81
22 23 2.332654 CCTCTTTTTGCCGTCCCCG 61.333 63.158 0.00 0.00 0.00 5.73
40 41 4.801221 GCTTTCCGCGCGCAGAAG 62.801 66.667 32.61 27.94 0.00 2.85
41 42 4.152625 CTTTCCGCGCGCAGAAGG 62.153 66.667 32.61 26.95 0.00 3.46
52 53 3.197790 CAGAAGGCCGCCGTGATG 61.198 66.667 1.24 0.00 0.00 3.07
53 54 3.706373 AGAAGGCCGCCGTGATGT 61.706 61.111 1.24 0.00 0.00 3.06
54 55 3.499737 GAAGGCCGCCGTGATGTG 61.500 66.667 1.24 0.00 0.00 3.21
55 56 3.950794 GAAGGCCGCCGTGATGTGA 62.951 63.158 1.24 0.00 0.00 3.58
56 57 3.545124 AAGGCCGCCGTGATGTGAA 62.545 57.895 3.05 0.00 0.00 3.18
57 58 3.799755 GGCCGCCGTGATGTGAAC 61.800 66.667 0.00 0.00 0.00 3.18
58 59 2.742372 GCCGCCGTGATGTGAACT 60.742 61.111 0.00 0.00 0.00 3.01
59 60 2.740714 GCCGCCGTGATGTGAACTC 61.741 63.158 0.00 0.00 0.00 3.01
60 61 1.079819 CCGCCGTGATGTGAACTCT 60.080 57.895 0.00 0.00 0.00 3.24
61 62 1.078759 CCGCCGTGATGTGAACTCTC 61.079 60.000 0.00 0.00 0.00 3.20
62 63 1.078759 CGCCGTGATGTGAACTCTCC 61.079 60.000 0.00 0.00 0.00 3.71
63 64 1.078759 GCCGTGATGTGAACTCTCCG 61.079 60.000 0.00 0.00 0.00 4.63
64 65 0.458543 CCGTGATGTGAACTCTCCGG 60.459 60.000 0.00 0.00 0.00 5.14
65 66 0.458543 CGTGATGTGAACTCTCCGGG 60.459 60.000 0.00 0.00 0.00 5.73
66 67 0.895530 GTGATGTGAACTCTCCGGGA 59.104 55.000 0.00 0.00 0.00 5.14
67 68 1.275291 GTGATGTGAACTCTCCGGGAA 59.725 52.381 0.00 0.00 0.00 3.97
68 69 1.550524 TGATGTGAACTCTCCGGGAAG 59.449 52.381 0.00 1.39 0.00 3.46
69 70 1.825474 GATGTGAACTCTCCGGGAAGA 59.175 52.381 0.00 0.00 0.00 2.87
70 71 1.938585 TGTGAACTCTCCGGGAAGAT 58.061 50.000 0.00 0.00 0.00 2.40
71 72 1.825474 TGTGAACTCTCCGGGAAGATC 59.175 52.381 0.00 4.46 0.00 2.75
72 73 1.825474 GTGAACTCTCCGGGAAGATCA 59.175 52.381 0.00 7.23 0.00 2.92
73 74 2.432510 GTGAACTCTCCGGGAAGATCAT 59.567 50.000 16.09 0.00 0.00 2.45
74 75 3.107601 TGAACTCTCCGGGAAGATCATT 58.892 45.455 0.00 0.00 0.00 2.57
75 76 3.519510 TGAACTCTCCGGGAAGATCATTT 59.480 43.478 0.00 0.00 0.00 2.32
76 77 3.828875 ACTCTCCGGGAAGATCATTTC 57.171 47.619 0.00 0.00 0.00 2.17
77 78 3.379452 ACTCTCCGGGAAGATCATTTCT 58.621 45.455 0.00 0.00 35.70 2.52
79 80 4.962995 ACTCTCCGGGAAGATCATTTCTTA 59.037 41.667 0.00 0.00 44.88 2.10
80 81 5.425539 ACTCTCCGGGAAGATCATTTCTTAA 59.574 40.000 0.00 0.00 44.88 1.85
81 82 5.918608 TCTCCGGGAAGATCATTTCTTAAG 58.081 41.667 0.00 0.00 44.88 1.85
82 83 5.036117 TCCGGGAAGATCATTTCTTAAGG 57.964 43.478 0.00 0.00 44.88 2.69
83 84 4.473559 TCCGGGAAGATCATTTCTTAAGGT 59.526 41.667 0.00 0.00 44.88 3.50
84 85 5.664006 TCCGGGAAGATCATTTCTTAAGGTA 59.336 40.000 0.00 0.00 44.88 3.08
85 86 5.992217 CCGGGAAGATCATTTCTTAAGGTAG 59.008 44.000 1.85 0.00 44.88 3.18
86 87 6.183360 CCGGGAAGATCATTTCTTAAGGTAGA 60.183 42.308 1.85 0.00 44.88 2.59
87 88 7.445945 CGGGAAGATCATTTCTTAAGGTAGAT 58.554 38.462 1.85 1.90 44.88 1.98
88 89 8.585881 CGGGAAGATCATTTCTTAAGGTAGATA 58.414 37.037 1.85 0.00 44.88 1.98
89 90 9.713713 GGGAAGATCATTTCTTAAGGTAGATAC 57.286 37.037 1.85 0.00 44.88 2.24
96 97 9.162764 TCATTTCTTAAGGTAGATACAAACAGC 57.837 33.333 1.85 0.00 0.00 4.40
97 98 7.916914 TTTCTTAAGGTAGATACAAACAGCC 57.083 36.000 1.85 0.00 0.00 4.85
98 99 6.614694 TCTTAAGGTAGATACAAACAGCCA 57.385 37.500 1.85 0.00 0.00 4.75
99 100 7.011499 TCTTAAGGTAGATACAAACAGCCAA 57.989 36.000 1.85 0.00 0.00 4.52
100 101 7.630082 TCTTAAGGTAGATACAAACAGCCAAT 58.370 34.615 1.85 0.00 0.00 3.16
101 102 7.769044 TCTTAAGGTAGATACAAACAGCCAATC 59.231 37.037 1.85 0.00 0.00 2.67
102 103 5.700402 AGGTAGATACAAACAGCCAATCT 57.300 39.130 0.00 0.00 0.00 2.40
103 104 6.808321 AGGTAGATACAAACAGCCAATCTA 57.192 37.500 0.00 0.00 0.00 1.98
104 105 6.583562 AGGTAGATACAAACAGCCAATCTAC 58.416 40.000 10.80 10.80 44.15 2.59
105 106 5.462398 GGTAGATACAAACAGCCAATCTACG 59.538 44.000 12.26 0.00 45.09 3.51
106 107 5.086104 AGATACAAACAGCCAATCTACGT 57.914 39.130 0.00 0.00 0.00 3.57
107 108 5.109903 AGATACAAACAGCCAATCTACGTC 58.890 41.667 0.00 0.00 0.00 4.34
108 109 3.402628 ACAAACAGCCAATCTACGTCT 57.597 42.857 0.00 0.00 0.00 4.18
109 110 3.326747 ACAAACAGCCAATCTACGTCTC 58.673 45.455 0.00 0.00 0.00 3.36
110 111 3.006967 ACAAACAGCCAATCTACGTCTCT 59.993 43.478 0.00 0.00 0.00 3.10
111 112 3.963428 AACAGCCAATCTACGTCTCTT 57.037 42.857 0.00 0.00 0.00 2.85
112 113 3.963428 ACAGCCAATCTACGTCTCTTT 57.037 42.857 0.00 0.00 0.00 2.52
113 114 3.589988 ACAGCCAATCTACGTCTCTTTG 58.410 45.455 0.00 0.00 0.00 2.77
114 115 3.258372 ACAGCCAATCTACGTCTCTTTGA 59.742 43.478 0.00 0.00 0.00 2.69
115 116 4.081420 ACAGCCAATCTACGTCTCTTTGAT 60.081 41.667 0.00 0.00 0.00 2.57
116 117 4.269603 CAGCCAATCTACGTCTCTTTGATG 59.730 45.833 0.00 0.00 37.69 3.07
117 118 3.001736 GCCAATCTACGTCTCTTTGATGC 59.998 47.826 0.00 0.00 35.15 3.91
118 119 4.183865 CCAATCTACGTCTCTTTGATGCA 58.816 43.478 0.00 0.00 35.15 3.96
119 120 4.033358 CCAATCTACGTCTCTTTGATGCAC 59.967 45.833 0.00 0.00 35.15 4.57
120 121 3.232213 TCTACGTCTCTTTGATGCACC 57.768 47.619 0.00 0.00 35.15 5.01
121 122 2.560981 TCTACGTCTCTTTGATGCACCA 59.439 45.455 0.00 0.00 35.15 4.17
122 123 2.254546 ACGTCTCTTTGATGCACCAA 57.745 45.000 0.00 0.00 35.15 3.67
123 124 2.783135 ACGTCTCTTTGATGCACCAAT 58.217 42.857 0.00 0.00 35.15 3.16
124 125 3.149196 ACGTCTCTTTGATGCACCAATT 58.851 40.909 0.00 0.00 35.15 2.32
125 126 3.569701 ACGTCTCTTTGATGCACCAATTT 59.430 39.130 0.00 0.00 35.15 1.82
126 127 4.161333 CGTCTCTTTGATGCACCAATTTC 58.839 43.478 0.00 0.00 0.00 2.17
127 128 4.083110 CGTCTCTTTGATGCACCAATTTCT 60.083 41.667 0.00 0.00 0.00 2.52
128 129 5.122239 CGTCTCTTTGATGCACCAATTTCTA 59.878 40.000 0.00 0.00 0.00 2.10
129 130 6.348458 CGTCTCTTTGATGCACCAATTTCTAA 60.348 38.462 0.00 0.00 0.00 2.10
130 131 7.025963 GTCTCTTTGATGCACCAATTTCTAAG 58.974 38.462 0.00 0.00 0.00 2.18
131 132 6.716628 TCTCTTTGATGCACCAATTTCTAAGT 59.283 34.615 0.00 0.00 0.00 2.24
132 133 7.882791 TCTCTTTGATGCACCAATTTCTAAGTA 59.117 33.333 0.00 0.00 0.00 2.24
133 134 8.044060 TCTTTGATGCACCAATTTCTAAGTAG 57.956 34.615 0.00 0.00 0.00 2.57
134 135 7.665559 TCTTTGATGCACCAATTTCTAAGTAGT 59.334 33.333 0.00 0.00 0.00 2.73
135 136 8.856153 TTTGATGCACCAATTTCTAAGTAGTA 57.144 30.769 0.00 0.00 0.00 1.82
136 137 8.856153 TTGATGCACCAATTTCTAAGTAGTAA 57.144 30.769 0.00 0.00 0.00 2.24
137 138 8.263940 TGATGCACCAATTTCTAAGTAGTAAC 57.736 34.615 0.00 0.00 0.00 2.50
138 139 8.100791 TGATGCACCAATTTCTAAGTAGTAACT 58.899 33.333 0.00 0.00 37.65 2.24
140 141 8.319143 TGCACCAATTTCTAAGTAGTAACTTC 57.681 34.615 0.00 0.00 42.42 3.01
141 142 7.934665 TGCACCAATTTCTAAGTAGTAACTTCA 59.065 33.333 0.00 0.00 42.42 3.02
142 143 8.947115 GCACCAATTTCTAAGTAGTAACTTCAT 58.053 33.333 0.00 0.00 42.42 2.57
179 180 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
180 181 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
181 182 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
200 201 9.732130 AAGAGCATTTAATCACTAAACTCTCTT 57.268 29.630 12.38 12.38 41.22 2.85
237 238 9.436957 ACAGAGGAAGTAACTGTTAATTACATG 57.563 33.333 21.05 19.62 41.21 3.21
238 239 9.436957 CAGAGGAAGTAACTGTTAATTACATGT 57.563 33.333 21.05 2.69 35.85 3.21
248 249 9.772973 AACTGTTAATTACATGTACTGAGTTGA 57.227 29.630 4.68 0.00 35.85 3.18
249 250 9.424319 ACTGTTAATTACATGTACTGAGTTGAG 57.576 33.333 4.68 0.00 35.85 3.02
250 251 9.639601 CTGTTAATTACATGTACTGAGTTGAGA 57.360 33.333 4.68 0.00 35.85 3.27
273 274 9.617975 GAGATATAAATCTAATTTGGCTGTTGC 57.382 33.333 0.00 0.00 42.73 4.17
274 275 9.359653 AGATATAAATCTAATTTGGCTGTTGCT 57.640 29.630 0.00 0.00 40.82 3.91
275 276 9.971922 GATATAAATCTAATTTGGCTGTTGCTT 57.028 29.630 0.00 0.00 35.17 3.91
276 277 9.971922 ATATAAATCTAATTTGGCTGTTGCTTC 57.028 29.630 0.00 0.00 35.17 3.86
277 278 5.990120 AATCTAATTTGGCTGTTGCTTCT 57.010 34.783 0.00 0.00 39.59 2.85
278 279 7.466746 AAATCTAATTTGGCTGTTGCTTCTA 57.533 32.000 0.00 0.00 39.59 2.10
279 280 7.651027 AATCTAATTTGGCTGTTGCTTCTAT 57.349 32.000 0.00 0.00 39.59 1.98
280 281 7.651027 ATCTAATTTGGCTGTTGCTTCTATT 57.349 32.000 0.00 0.00 39.59 1.73
281 282 7.466746 TCTAATTTGGCTGTTGCTTCTATTT 57.533 32.000 0.00 0.00 39.59 1.40
282 283 8.574251 TCTAATTTGGCTGTTGCTTCTATTTA 57.426 30.769 0.00 0.00 39.59 1.40
283 284 8.677300 TCTAATTTGGCTGTTGCTTCTATTTAG 58.323 33.333 0.00 0.00 39.59 1.85
284 285 4.701956 TTGGCTGTTGCTTCTATTTAGC 57.298 40.909 0.00 0.00 39.59 3.09
285 286 3.955471 TGGCTGTTGCTTCTATTTAGCT 58.045 40.909 0.00 0.00 39.38 3.32
286 287 5.097742 TGGCTGTTGCTTCTATTTAGCTA 57.902 39.130 0.00 0.00 39.38 3.32
287 288 5.684704 TGGCTGTTGCTTCTATTTAGCTAT 58.315 37.500 0.00 0.00 39.38 2.97
288 289 6.826668 TGGCTGTTGCTTCTATTTAGCTATA 58.173 36.000 0.00 0.00 39.38 1.31
289 290 7.453393 TGGCTGTTGCTTCTATTTAGCTATAT 58.547 34.615 0.00 0.00 39.38 0.86
290 291 8.593679 TGGCTGTTGCTTCTATTTAGCTATATA 58.406 33.333 0.00 0.00 39.38 0.86
291 292 8.874816 GGCTGTTGCTTCTATTTAGCTATATAC 58.125 37.037 0.00 0.00 39.38 1.47
292 293 9.646427 GCTGTTGCTTCTATTTAGCTATATACT 57.354 33.333 0.00 0.00 39.38 2.12
321 322 9.716556 ACTTATCTAGATTAACCTTGAGAGGAA 57.283 33.333 11.25 0.00 46.74 3.36
323 324 9.937876 TTATCTAGATTAACCTTGAGAGGAAGA 57.062 33.333 11.25 0.00 46.74 2.87
324 325 8.846423 ATCTAGATTAACCTTGAGAGGAAGAA 57.154 34.615 0.00 0.00 46.74 2.52
325 326 8.666129 TCTAGATTAACCTTGAGAGGAAGAAA 57.334 34.615 0.00 0.00 46.74 2.52
326 327 9.101325 TCTAGATTAACCTTGAGAGGAAGAAAA 57.899 33.333 0.00 0.00 46.74 2.29
327 328 9.377312 CTAGATTAACCTTGAGAGGAAGAAAAG 57.623 37.037 0.00 0.00 46.74 2.27
328 329 7.978925 AGATTAACCTTGAGAGGAAGAAAAGA 58.021 34.615 0.00 0.00 46.74 2.52
329 330 8.440771 AGATTAACCTTGAGAGGAAGAAAAGAA 58.559 33.333 0.00 0.00 46.74 2.52
330 331 9.237187 GATTAACCTTGAGAGGAAGAAAAGAAT 57.763 33.333 0.00 0.00 46.74 2.40
334 335 9.898152 AACCTTGAGAGGAAGAAAAGAATATAG 57.102 33.333 0.00 0.00 46.74 1.31
335 336 9.052365 ACCTTGAGAGGAAGAAAAGAATATAGT 57.948 33.333 0.00 0.00 46.74 2.12
336 337 9.898152 CCTTGAGAGGAAGAAAAGAATATAGTT 57.102 33.333 0.00 0.00 46.74 2.24
406 407 8.970859 TGACATTTTGGTGGTTCAATTTATTT 57.029 26.923 0.00 0.00 0.00 1.40
411 412 9.942850 ATTTTGGTGGTTCAATTTATTTAGAGG 57.057 29.630 0.00 0.00 0.00 3.69
412 413 6.524101 TGGTGGTTCAATTTATTTAGAGGC 57.476 37.500 0.00 0.00 0.00 4.70
413 414 5.124776 TGGTGGTTCAATTTATTTAGAGGCG 59.875 40.000 0.00 0.00 0.00 5.52
414 415 5.355910 GGTGGTTCAATTTATTTAGAGGCGA 59.644 40.000 0.00 0.00 0.00 5.54
415 416 6.127842 GGTGGTTCAATTTATTTAGAGGCGAA 60.128 38.462 0.00 0.00 0.00 4.70
416 417 6.967199 GTGGTTCAATTTATTTAGAGGCGAAG 59.033 38.462 0.00 0.00 0.00 3.79
417 418 6.094881 TGGTTCAATTTATTTAGAGGCGAAGG 59.905 38.462 0.00 0.00 0.00 3.46
418 419 6.459710 GGTTCAATTTATTTAGAGGCGAAGGG 60.460 42.308 0.00 0.00 0.00 3.95
419 420 5.130350 TCAATTTATTTAGAGGCGAAGGGG 58.870 41.667 0.00 0.00 0.00 4.79
420 421 4.790718 ATTTATTTAGAGGCGAAGGGGT 57.209 40.909 0.00 0.00 0.00 4.95
421 422 5.899631 ATTTATTTAGAGGCGAAGGGGTA 57.100 39.130 0.00 0.00 0.00 3.69
422 423 4.950205 TTATTTAGAGGCGAAGGGGTAG 57.050 45.455 0.00 0.00 0.00 3.18
423 424 2.537633 TTTAGAGGCGAAGGGGTAGA 57.462 50.000 0.00 0.00 0.00 2.59
424 425 2.769602 TTAGAGGCGAAGGGGTAGAT 57.230 50.000 0.00 0.00 0.00 1.98
425 426 3.889859 TTAGAGGCGAAGGGGTAGATA 57.110 47.619 0.00 0.00 0.00 1.98
426 427 2.769602 AGAGGCGAAGGGGTAGATAA 57.230 50.000 0.00 0.00 0.00 1.75
427 428 3.042059 AGAGGCGAAGGGGTAGATAAA 57.958 47.619 0.00 0.00 0.00 1.40
428 429 3.588569 AGAGGCGAAGGGGTAGATAAAT 58.411 45.455 0.00 0.00 0.00 1.40
429 430 3.325135 AGAGGCGAAGGGGTAGATAAATG 59.675 47.826 0.00 0.00 0.00 2.32
430 431 3.046374 AGGCGAAGGGGTAGATAAATGT 58.954 45.455 0.00 0.00 0.00 2.71
431 432 3.071167 AGGCGAAGGGGTAGATAAATGTC 59.929 47.826 0.00 0.00 0.00 3.06
432 433 3.071167 GGCGAAGGGGTAGATAAATGTCT 59.929 47.826 0.00 0.00 0.00 3.41
433 434 4.058817 GCGAAGGGGTAGATAAATGTCTG 58.941 47.826 0.00 0.00 0.00 3.51
434 435 4.058817 CGAAGGGGTAGATAAATGTCTGC 58.941 47.826 0.00 0.00 0.00 4.26
435 436 4.442893 CGAAGGGGTAGATAAATGTCTGCA 60.443 45.833 0.00 0.00 33.15 4.41
436 437 5.437060 GAAGGGGTAGATAAATGTCTGCAA 58.563 41.667 0.00 0.00 33.15 4.08
437 438 5.450818 AGGGGTAGATAAATGTCTGCAAA 57.549 39.130 0.00 0.00 33.15 3.68
438 439 5.440610 AGGGGTAGATAAATGTCTGCAAAG 58.559 41.667 0.00 0.00 33.15 2.77
439 440 4.036852 GGGGTAGATAAATGTCTGCAAAGC 59.963 45.833 0.00 0.00 33.15 3.51
440 441 4.884164 GGGTAGATAAATGTCTGCAAAGCT 59.116 41.667 0.00 0.00 33.15 3.74
441 442 6.055588 GGGTAGATAAATGTCTGCAAAGCTA 58.944 40.000 0.00 0.00 33.15 3.32
442 443 6.542370 GGGTAGATAAATGTCTGCAAAGCTAA 59.458 38.462 0.00 0.00 33.15 3.09
443 444 7.067008 GGGTAGATAAATGTCTGCAAAGCTAAA 59.933 37.037 0.00 0.00 33.15 1.85
444 445 8.624776 GGTAGATAAATGTCTGCAAAGCTAAAT 58.375 33.333 0.00 0.00 33.15 1.40
451 452 8.885494 AATGTCTGCAAAGCTAAATTTAAACA 57.115 26.923 0.00 0.00 0.00 2.83
452 453 9.492973 AATGTCTGCAAAGCTAAATTTAAACAT 57.507 25.926 0.00 0.00 0.00 2.71
454 455 9.405587 TGTCTGCAAAGCTAAATTTAAACATAC 57.594 29.630 0.00 0.00 0.00 2.39
455 456 9.405587 GTCTGCAAAGCTAAATTTAAACATACA 57.594 29.630 0.00 0.00 0.00 2.29
456 457 9.624697 TCTGCAAAGCTAAATTTAAACATACAG 57.375 29.630 0.00 4.46 0.00 2.74
457 458 9.410556 CTGCAAAGCTAAATTTAAACATACAGT 57.589 29.630 0.00 0.00 0.00 3.55
458 459 9.405587 TGCAAAGCTAAATTTAAACATACAGTC 57.594 29.630 0.00 0.00 0.00 3.51
459 460 9.626045 GCAAAGCTAAATTTAAACATACAGTCT 57.374 29.630 0.00 0.00 0.00 3.24
462 463 9.515226 AAGCTAAATTTAAACATACAGTCTGGA 57.485 29.630 4.53 0.00 0.00 3.86
463 464 9.515226 AGCTAAATTTAAACATACAGTCTGGAA 57.485 29.630 4.53 0.00 0.00 3.53
464 465 9.556030 GCTAAATTTAAACATACAGTCTGGAAC 57.444 33.333 4.53 0.00 0.00 3.62
469 470 9.912634 ATTTAAACATACAGTCTGGAACATTTG 57.087 29.630 4.53 0.00 38.20 2.32
470 471 6.959639 AAACATACAGTCTGGAACATTTGT 57.040 33.333 4.53 0.00 38.20 2.83
471 472 6.560253 AACATACAGTCTGGAACATTTGTC 57.440 37.500 4.53 0.00 38.20 3.18
472 473 4.690748 ACATACAGTCTGGAACATTTGTCG 59.309 41.667 4.53 0.00 38.20 4.35
473 474 3.194005 ACAGTCTGGAACATTTGTCGT 57.806 42.857 4.53 0.00 38.20 4.34
474 475 3.541632 ACAGTCTGGAACATTTGTCGTT 58.458 40.909 4.53 0.00 38.20 3.85
475 476 3.312421 ACAGTCTGGAACATTTGTCGTTG 59.688 43.478 4.53 0.00 38.20 4.10
476 477 2.290641 AGTCTGGAACATTTGTCGTTGC 59.709 45.455 0.00 0.00 38.20 4.17
477 478 1.262950 TCTGGAACATTTGTCGTTGCG 59.737 47.619 0.00 0.00 37.50 4.85
478 479 1.262950 CTGGAACATTTGTCGTTGCGA 59.737 47.619 0.00 0.00 37.50 5.10
495 496 7.696755 TCGTTGCGACTTATATAACTTAGACA 58.303 34.615 1.84 0.00 0.00 3.41
496 497 8.183536 TCGTTGCGACTTATATAACTTAGACAA 58.816 33.333 1.84 0.00 0.00 3.18
497 498 8.800972 CGTTGCGACTTATATAACTTAGACAAA 58.199 33.333 1.84 0.00 0.00 2.83
527 528 8.677148 AAGTAATGCGATTAGGAAATGTATGT 57.323 30.769 0.00 0.00 0.00 2.29
528 529 8.677148 AGTAATGCGATTAGGAAATGTATGTT 57.323 30.769 0.00 0.00 0.00 2.71
529 530 8.559536 AGTAATGCGATTAGGAAATGTATGTTG 58.440 33.333 0.00 0.00 0.00 3.33
530 531 5.168526 TGCGATTAGGAAATGTATGTTGC 57.831 39.130 0.00 0.00 0.00 4.17
531 532 4.881273 TGCGATTAGGAAATGTATGTTGCT 59.119 37.500 0.00 0.00 0.00 3.91
532 533 6.052360 TGCGATTAGGAAATGTATGTTGCTA 58.948 36.000 0.00 0.00 0.00 3.49
533 534 6.710295 TGCGATTAGGAAATGTATGTTGCTAT 59.290 34.615 0.00 0.00 30.25 2.97
534 535 7.017645 GCGATTAGGAAATGTATGTTGCTATG 58.982 38.462 0.00 0.00 30.25 2.23
535 536 7.307989 GCGATTAGGAAATGTATGTTGCTATGT 60.308 37.037 0.00 0.00 30.25 2.29
536 537 8.011673 CGATTAGGAAATGTATGTTGCTATGTG 58.988 37.037 0.00 0.00 30.25 3.21
537 538 8.978874 ATTAGGAAATGTATGTTGCTATGTGA 57.021 30.769 0.00 0.00 30.25 3.58
538 539 6.932356 AGGAAATGTATGTTGCTATGTGAG 57.068 37.500 0.00 0.00 0.00 3.51
539 540 6.418101 AGGAAATGTATGTTGCTATGTGAGT 58.582 36.000 0.00 0.00 0.00 3.41
540 541 6.317140 AGGAAATGTATGTTGCTATGTGAGTG 59.683 38.462 0.00 0.00 0.00 3.51
541 542 6.094048 GGAAATGTATGTTGCTATGTGAGTGT 59.906 38.462 0.00 0.00 0.00 3.55
542 543 6.426980 AATGTATGTTGCTATGTGAGTGTG 57.573 37.500 0.00 0.00 0.00 3.82
543 544 5.146010 TGTATGTTGCTATGTGAGTGTGA 57.854 39.130 0.00 0.00 0.00 3.58
544 545 5.170748 TGTATGTTGCTATGTGAGTGTGAG 58.829 41.667 0.00 0.00 0.00 3.51
545 546 4.541973 ATGTTGCTATGTGAGTGTGAGA 57.458 40.909 0.00 0.00 0.00 3.27
546 547 3.653344 TGTTGCTATGTGAGTGTGAGAC 58.347 45.455 0.00 0.00 0.00 3.36
547 548 3.321968 TGTTGCTATGTGAGTGTGAGACT 59.678 43.478 0.00 0.00 37.76 3.24
548 549 3.582714 TGCTATGTGAGTGTGAGACTG 57.417 47.619 0.00 0.00 33.83 3.51
549 550 2.893489 TGCTATGTGAGTGTGAGACTGT 59.107 45.455 0.00 0.00 33.83 3.55
550 551 3.249091 GCTATGTGAGTGTGAGACTGTG 58.751 50.000 0.00 0.00 33.83 3.66
551 552 3.305676 GCTATGTGAGTGTGAGACTGTGT 60.306 47.826 0.00 0.00 33.83 3.72
552 553 2.871182 TGTGAGTGTGAGACTGTGTC 57.129 50.000 0.00 0.00 33.83 3.67
553 554 2.379005 TGTGAGTGTGAGACTGTGTCT 58.621 47.619 6.50 0.00 46.42 3.41
554 555 3.551846 TGTGAGTGTGAGACTGTGTCTA 58.448 45.455 6.50 0.00 43.53 2.59
555 556 3.315470 TGTGAGTGTGAGACTGTGTCTAC 59.685 47.826 6.50 5.81 43.53 2.59
556 557 3.566322 GTGAGTGTGAGACTGTGTCTACT 59.434 47.826 12.59 12.59 43.53 2.57
557 558 3.565902 TGAGTGTGAGACTGTGTCTACTG 59.434 47.826 15.91 0.00 43.53 2.74
558 559 3.556999 AGTGTGAGACTGTGTCTACTGT 58.443 45.455 6.50 0.00 43.53 3.55
559 560 3.954904 AGTGTGAGACTGTGTCTACTGTT 59.045 43.478 6.50 0.00 43.53 3.16
560 561 4.402793 AGTGTGAGACTGTGTCTACTGTTT 59.597 41.667 6.50 0.00 43.53 2.83
561 562 4.740695 GTGTGAGACTGTGTCTACTGTTTC 59.259 45.833 6.50 0.00 43.53 2.78
562 563 3.975670 GTGAGACTGTGTCTACTGTTTCG 59.024 47.826 6.50 0.00 43.53 3.46
563 564 2.981140 GAGACTGTGTCTACTGTTTCGC 59.019 50.000 0.00 0.00 43.53 4.70
564 565 2.361119 AGACTGTGTCTACTGTTTCGCA 59.639 45.455 0.00 0.00 41.51 5.10
565 566 2.470821 ACTGTGTCTACTGTTTCGCAC 58.529 47.619 0.00 0.00 35.74 5.34
566 567 2.100916 ACTGTGTCTACTGTTTCGCACT 59.899 45.455 0.00 0.00 35.74 4.40
567 568 3.317149 ACTGTGTCTACTGTTTCGCACTA 59.683 43.478 0.00 0.00 35.74 2.74
568 569 4.022242 ACTGTGTCTACTGTTTCGCACTAT 60.022 41.667 0.00 0.00 35.74 2.12
569 570 4.234574 TGTGTCTACTGTTTCGCACTATG 58.765 43.478 0.00 0.00 0.00 2.23
570 571 3.612860 GTGTCTACTGTTTCGCACTATGG 59.387 47.826 0.00 0.00 0.00 2.74
571 572 3.257375 TGTCTACTGTTTCGCACTATGGT 59.743 43.478 0.00 0.00 0.00 3.55
630 632 4.883354 GGAATCCTGGCCCCGCTG 62.883 72.222 0.00 0.00 0.00 5.18
642 644 3.857854 CCGCTGCTGCTTAGTGCG 61.858 66.667 14.03 9.03 46.63 5.34
651 653 2.726066 GCTGCTTAGTGCGATGTTTGAC 60.726 50.000 0.00 0.00 46.63 3.18
666 668 4.699637 TGTTTGACGAACAGATGTAACCT 58.300 39.130 4.01 0.00 43.13 3.50
670 672 3.069016 TGACGAACAGATGTAACCTGTGT 59.931 43.478 0.00 0.00 43.42 3.72
674 676 4.150627 CGAACAGATGTAACCTGTGTCTTG 59.849 45.833 0.00 0.00 43.42 3.02
688 690 3.244044 TGTGTCTTGTACTGTATGCAGCA 60.244 43.478 11.09 0.00 46.30 4.41
689 691 3.369147 GTGTCTTGTACTGTATGCAGCAG 59.631 47.826 11.09 16.57 46.30 4.24
690 692 3.006859 TGTCTTGTACTGTATGCAGCAGT 59.993 43.478 24.00 24.00 46.30 4.40
731 736 2.232208 CCTGGCATCCCTTTGTTTTCTC 59.768 50.000 0.00 0.00 0.00 2.87
810 815 2.084546 GTAAGTGATTCCTGGTGCACC 58.915 52.381 29.67 29.67 31.85 5.01
834 839 1.102222 AGATAGGACGGACGGACAGC 61.102 60.000 0.00 0.00 0.00 4.40
835 840 1.076923 ATAGGACGGACGGACAGCT 60.077 57.895 0.00 0.00 0.00 4.24
856 865 1.080093 TCCACAACGATGGCGAGTC 60.080 57.895 0.00 0.00 39.85 3.36
882 891 1.880027 CCAAAGGAAGAAGACAACGGG 59.120 52.381 0.00 0.00 0.00 5.28
883 892 1.880027 CAAAGGAAGAAGACAACGGGG 59.120 52.381 0.00 0.00 0.00 5.73
884 893 0.250770 AAGGAAGAAGACAACGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
885 894 1.128188 AGGAAGAAGACAACGGGGCT 61.128 55.000 0.00 0.00 0.00 5.19
902 911 1.405105 GGCTGTTTGTTCTGTCTGCAA 59.595 47.619 0.00 0.00 0.00 4.08
906 922 4.534168 CTGTTTGTTCTGTCTGCAATCAG 58.466 43.478 10.42 10.42 41.67 2.90
909 925 5.588246 TGTTTGTTCTGTCTGCAATCAGTTA 59.412 36.000 14.62 5.12 41.10 2.24
915 931 4.284490 TCTGTCTGCAATCAGTTAACCTCT 59.716 41.667 14.62 0.00 41.10 3.69
916 932 4.569943 TGTCTGCAATCAGTTAACCTCTC 58.430 43.478 0.88 0.00 41.10 3.20
950 979 1.610886 GGAGTAACTTGTCCTGCACCC 60.611 57.143 0.00 0.00 0.00 4.61
1036 1106 4.748679 CGCAAGACAAGCCAGCGC 62.749 66.667 0.00 0.00 41.95 5.92
1764 1835 4.404098 GTGGCCGGGTTCGTCCAT 62.404 66.667 2.18 0.00 46.40 3.41
1901 1978 0.395312 GAGACCAAGAACCCGTCCAA 59.605 55.000 0.00 0.00 0.00 3.53
2334 2411 3.447025 GATAGCCACCGCGCTCCTT 62.447 63.158 5.56 0.00 40.39 3.36
2619 2702 1.890552 ACATCTTCCTCATGGGCTCT 58.109 50.000 0.00 0.00 34.39 4.09
2757 2840 2.124983 GCTGATGAGAAGGCGGCA 60.125 61.111 13.08 0.00 34.17 5.69
2823 2915 1.188863 AAGATGTGGCTGGATTTGGC 58.811 50.000 0.00 0.00 0.00 4.52
2866 2958 7.328005 CACCATGATTGAGAATGTAGATAGACG 59.672 40.741 0.00 0.00 0.00 4.18
2973 3069 7.497249 AGCTATATGTCAGTCAACTGGATTTTC 59.503 37.037 10.13 0.00 43.91 2.29
2982 3078 7.015487 TCAGTCAACTGGATTTTCAATTTGGAT 59.985 33.333 10.13 0.00 43.91 3.41
2986 3082 6.923199 ACTGGATTTTCAATTTGGATCAGT 57.077 33.333 0.00 0.00 0.00 3.41
2996 3094 9.480053 TTTCAATTTGGATCAGTCAATTTCTTC 57.520 29.630 0.00 0.00 0.00 2.87
3021 3119 6.237942 CGTCGTTGATATTTGCTCTGAGATTT 60.238 38.462 9.28 0.00 0.00 2.17
3027 3125 3.909776 TTTGCTCTGAGATTTGTGCTG 57.090 42.857 9.28 0.00 0.00 4.41
3035 3133 1.981533 GAGATTTGTGCTGCGCTTTTC 59.018 47.619 14.92 8.02 0.00 2.29
3041 3139 0.871057 GTGCTGCGCTTTTCTCTTCT 59.129 50.000 9.73 0.00 0.00 2.85
3042 3140 0.870393 TGCTGCGCTTTTCTCTTCTG 59.130 50.000 9.73 0.00 0.00 3.02
3049 3147 3.621794 CGCTTTTCTCTTCTGTTTGTGG 58.378 45.455 0.00 0.00 0.00 4.17
3050 3148 3.375642 GCTTTTCTCTTCTGTTTGTGGC 58.624 45.455 0.00 0.00 0.00 5.01
3087 3189 7.259290 TCTGTTTATGGTGTCTCTTGTTTTC 57.741 36.000 0.00 0.00 0.00 2.29
3090 3192 2.031258 TGGTGTCTCTTGTTTTCGCA 57.969 45.000 0.00 0.00 0.00 5.10
3105 3207 1.747367 CGCAAACCCCTATTCGCCA 60.747 57.895 0.00 0.00 0.00 5.69
3108 3210 1.094785 CAAACCCCTATTCGCCACTG 58.905 55.000 0.00 0.00 0.00 3.66
3157 3261 3.458163 CGCCCTAACTGAGCCGGA 61.458 66.667 5.05 0.00 0.00 5.14
3166 3270 0.400213 ACTGAGCCGGACCATTTTGA 59.600 50.000 5.05 0.00 0.00 2.69
3173 3277 3.829601 AGCCGGACCATTTTGATGTTTTA 59.170 39.130 5.05 0.00 0.00 1.52
3174 3278 4.282195 AGCCGGACCATTTTGATGTTTTAA 59.718 37.500 5.05 0.00 0.00 1.52
3178 3282 7.623297 GCCGGACCATTTTGATGTTTTAATTTC 60.623 37.037 5.05 0.00 0.00 2.17
3237 3361 7.406799 AATGTTTGCACTTTCCGAATTTAAG 57.593 32.000 0.00 0.00 0.00 1.85
3242 3369 7.458038 TTGCACTTTCCGAATTTAAGAAAAC 57.542 32.000 0.00 0.00 0.00 2.43
3247 3374 8.417176 CACTTTCCGAATTTAAGAAAACATTCG 58.583 33.333 9.64 9.64 37.07 3.34
3248 3375 8.347035 ACTTTCCGAATTTAAGAAAACATTCGA 58.653 29.630 15.72 3.77 38.47 3.71
3249 3376 9.176181 CTTTCCGAATTTAAGAAAACATTCGAA 57.824 29.630 15.72 0.00 38.47 3.71
3251 3378 8.889849 TCCGAATTTAAGAAAACATTCGAATC 57.110 30.769 7.92 0.00 38.47 2.52
3315 3442 9.111702 CAAAAATTGTTCGCTTCTTTTCAAAAA 57.888 25.926 0.00 0.00 0.00 1.94
3382 6748 6.702282 TCCGGAAATACAAAAATGTTTCCAAC 59.298 34.615 0.00 0.00 45.43 3.77
3384 6750 7.868415 CCGGAAATACAAAAATGTTTCCAACTA 59.132 33.333 14.04 0.00 45.43 2.24
3385 6751 9.250624 CGGAAATACAAAAATGTTTCCAACTAA 57.749 29.630 14.04 0.00 45.43 2.24
3443 6814 4.082845 TGGCGATTCCAAATTTTAGGTCA 58.917 39.130 0.00 0.00 43.21 4.02
3446 6817 5.465935 GCGATTCCAAATTTTAGGTCACAA 58.534 37.500 0.00 0.00 0.00 3.33
3450 6821 9.632807 CGATTCCAAATTTTAGGTCACAATTTA 57.367 29.630 0.00 0.00 30.60 1.40
3481 6855 8.576936 AAGTTAACTTTTTCAAAACACGAACA 57.423 26.923 15.22 0.00 30.82 3.18
3484 6858 9.800299 GTTAACTTTTTCAAAACACGAACATTT 57.200 25.926 0.00 0.00 0.00 2.32
3486 6860 8.927315 AACTTTTTCAAAACACGAACATTTTC 57.073 26.923 0.00 0.00 0.00 2.29
3487 6861 8.305441 ACTTTTTCAAAACACGAACATTTTCT 57.695 26.923 0.00 0.00 0.00 2.52
3535 6909 5.964758 TGGAAAATGATGAAGAAATTCGGG 58.035 37.500 0.00 0.00 0.00 5.14
3538 6912 7.093377 TGGAAAATGATGAAGAAATTCGGGAAT 60.093 33.333 0.00 0.00 0.00 3.01
3539 6913 7.436376 GGAAAATGATGAAGAAATTCGGGAATC 59.564 37.037 0.00 0.00 0.00 2.52
3542 6916 2.985896 TGAAGAAATTCGGGAATCGCT 58.014 42.857 0.00 0.00 39.05 4.93
3543 6917 4.131649 TGAAGAAATTCGGGAATCGCTA 57.868 40.909 0.00 0.00 39.05 4.26
3600 6975 9.685276 AAATGGAAGAAAAATTGAAAAAGACCT 57.315 25.926 0.00 0.00 0.00 3.85
3736 7112 7.641020 TGTGCTTTAAGAAAAGTTTACGCTTAC 59.359 33.333 0.00 0.00 43.44 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.636412 GGGACGGCAAAAAGAGGCC 61.636 63.158 0.00 0.00 46.80 5.19
3 4 2.636412 GGGGACGGCAAAAAGAGGC 61.636 63.158 0.00 0.00 0.00 4.70
4 5 3.681473 GGGGACGGCAAAAAGAGG 58.319 61.111 0.00 0.00 0.00 3.69
23 24 4.801221 CTTCTGCGCGCGGAAAGC 62.801 66.667 43.71 15.07 40.36 3.51
24 25 4.152625 CCTTCTGCGCGCGGAAAG 62.153 66.667 43.71 37.36 40.36 2.62
35 36 3.197790 CATCACGGCGGCCTTCTG 61.198 66.667 18.34 9.48 0.00 3.02
36 37 3.706373 ACATCACGGCGGCCTTCT 61.706 61.111 18.34 0.00 0.00 2.85
37 38 3.499737 CACATCACGGCGGCCTTC 61.500 66.667 18.34 0.00 0.00 3.46
38 39 3.545124 TTCACATCACGGCGGCCTT 62.545 57.895 18.34 4.40 0.00 4.35
39 40 4.015406 TTCACATCACGGCGGCCT 62.015 61.111 18.34 0.89 0.00 5.19
40 41 3.799755 GTTCACATCACGGCGGCC 61.800 66.667 13.24 9.54 0.00 6.13
41 42 2.740714 GAGTTCACATCACGGCGGC 61.741 63.158 13.24 0.00 0.00 6.53
42 43 1.078759 GAGAGTTCACATCACGGCGG 61.079 60.000 13.24 0.00 0.00 6.13
43 44 1.078759 GGAGAGTTCACATCACGGCG 61.079 60.000 4.80 4.80 0.00 6.46
44 45 1.078759 CGGAGAGTTCACATCACGGC 61.079 60.000 0.00 0.00 0.00 5.68
45 46 0.458543 CCGGAGAGTTCACATCACGG 60.459 60.000 0.00 0.00 34.63 4.94
46 47 0.458543 CCCGGAGAGTTCACATCACG 60.459 60.000 0.73 0.00 0.00 4.35
47 48 0.895530 TCCCGGAGAGTTCACATCAC 59.104 55.000 0.73 0.00 0.00 3.06
48 49 1.550524 CTTCCCGGAGAGTTCACATCA 59.449 52.381 0.73 0.00 0.00 3.07
49 50 1.825474 TCTTCCCGGAGAGTTCACATC 59.175 52.381 0.73 0.00 0.00 3.06
50 51 1.938585 TCTTCCCGGAGAGTTCACAT 58.061 50.000 0.73 0.00 0.00 3.21
51 52 1.825474 GATCTTCCCGGAGAGTTCACA 59.175 52.381 0.73 0.00 0.00 3.58
52 53 1.825474 TGATCTTCCCGGAGAGTTCAC 59.175 52.381 0.73 0.00 0.00 3.18
53 54 2.231716 TGATCTTCCCGGAGAGTTCA 57.768 50.000 0.73 8.31 0.00 3.18
54 55 3.828875 AATGATCTTCCCGGAGAGTTC 57.171 47.619 0.73 5.62 0.00 3.01
55 56 3.777522 AGAAATGATCTTCCCGGAGAGTT 59.222 43.478 0.73 0.00 33.39 3.01
56 57 3.379452 AGAAATGATCTTCCCGGAGAGT 58.621 45.455 0.73 0.00 33.39 3.24
57 58 4.414337 AAGAAATGATCTTCCCGGAGAG 57.586 45.455 0.73 0.00 45.42 3.20
58 59 5.163301 CCTTAAGAAATGATCTTCCCGGAGA 60.163 44.000 0.73 0.00 45.42 3.71
59 60 5.059833 CCTTAAGAAATGATCTTCCCGGAG 58.940 45.833 0.73 0.00 45.42 4.63
60 61 4.473559 ACCTTAAGAAATGATCTTCCCGGA 59.526 41.667 0.73 0.00 45.42 5.14
61 62 4.781934 ACCTTAAGAAATGATCTTCCCGG 58.218 43.478 3.36 0.00 45.42 5.73
62 63 6.817184 TCTACCTTAAGAAATGATCTTCCCG 58.183 40.000 3.36 0.00 45.42 5.14
63 64 9.713713 GTATCTACCTTAAGAAATGATCTTCCC 57.286 37.037 3.36 0.00 45.42 3.97
70 71 9.162764 GCTGTTTGTATCTACCTTAAGAAATGA 57.837 33.333 3.36 0.00 0.00 2.57
71 72 8.398665 GGCTGTTTGTATCTACCTTAAGAAATG 58.601 37.037 3.36 0.00 0.00 2.32
72 73 8.107095 TGGCTGTTTGTATCTACCTTAAGAAAT 58.893 33.333 3.36 0.00 0.00 2.17
73 74 7.455058 TGGCTGTTTGTATCTACCTTAAGAAA 58.545 34.615 3.36 0.00 0.00 2.52
74 75 7.011499 TGGCTGTTTGTATCTACCTTAAGAA 57.989 36.000 3.36 0.00 0.00 2.52
75 76 6.614694 TGGCTGTTTGTATCTACCTTAAGA 57.385 37.500 3.36 0.00 0.00 2.10
76 77 7.770897 AGATTGGCTGTTTGTATCTACCTTAAG 59.229 37.037 0.00 0.00 0.00 1.85
77 78 7.630082 AGATTGGCTGTTTGTATCTACCTTAA 58.370 34.615 0.00 0.00 0.00 1.85
78 79 7.195374 AGATTGGCTGTTTGTATCTACCTTA 57.805 36.000 0.00 0.00 0.00 2.69
79 80 6.067217 AGATTGGCTGTTTGTATCTACCTT 57.933 37.500 0.00 0.00 0.00 3.50
80 81 5.700402 AGATTGGCTGTTTGTATCTACCT 57.300 39.130 0.00 0.00 0.00 3.08
81 82 5.462398 CGTAGATTGGCTGTTTGTATCTACC 59.538 44.000 12.43 0.00 42.03 3.18
82 83 6.040878 ACGTAGATTGGCTGTTTGTATCTAC 58.959 40.000 0.00 0.00 41.80 2.59
83 84 6.096423 AGACGTAGATTGGCTGTTTGTATCTA 59.904 38.462 0.00 0.00 0.00 1.98
84 85 5.086104 ACGTAGATTGGCTGTTTGTATCT 57.914 39.130 0.00 0.00 0.00 1.98
85 86 5.109903 AGACGTAGATTGGCTGTTTGTATC 58.890 41.667 0.00 0.00 0.00 2.24
86 87 5.086104 AGACGTAGATTGGCTGTTTGTAT 57.914 39.130 0.00 0.00 0.00 2.29
87 88 4.219944 AGAGACGTAGATTGGCTGTTTGTA 59.780 41.667 0.00 0.00 0.00 2.41
88 89 3.006967 AGAGACGTAGATTGGCTGTTTGT 59.993 43.478 0.00 0.00 0.00 2.83
89 90 3.589988 AGAGACGTAGATTGGCTGTTTG 58.410 45.455 0.00 0.00 0.00 2.93
90 91 3.963428 AGAGACGTAGATTGGCTGTTT 57.037 42.857 0.00 0.00 0.00 2.83
91 92 3.963428 AAGAGACGTAGATTGGCTGTT 57.037 42.857 0.00 0.00 0.00 3.16
92 93 3.258372 TCAAAGAGACGTAGATTGGCTGT 59.742 43.478 0.00 0.00 0.00 4.40
93 94 3.849911 TCAAAGAGACGTAGATTGGCTG 58.150 45.455 0.00 0.00 0.00 4.85
94 95 4.437239 CATCAAAGAGACGTAGATTGGCT 58.563 43.478 0.00 0.00 0.00 4.75
95 96 3.001736 GCATCAAAGAGACGTAGATTGGC 59.998 47.826 0.00 0.00 0.00 4.52
96 97 4.033358 GTGCATCAAAGAGACGTAGATTGG 59.967 45.833 0.00 0.00 0.00 3.16
97 98 4.033358 GGTGCATCAAAGAGACGTAGATTG 59.967 45.833 0.00 0.00 0.00 2.67
98 99 4.184629 GGTGCATCAAAGAGACGTAGATT 58.815 43.478 0.00 0.00 0.00 2.40
99 100 3.195610 TGGTGCATCAAAGAGACGTAGAT 59.804 43.478 0.00 0.00 0.00 1.98
100 101 2.560981 TGGTGCATCAAAGAGACGTAGA 59.439 45.455 0.00 0.00 0.00 2.59
101 102 2.959516 TGGTGCATCAAAGAGACGTAG 58.040 47.619 0.00 0.00 0.00 3.51
102 103 3.394674 TTGGTGCATCAAAGAGACGTA 57.605 42.857 10.70 0.00 0.00 3.57
103 104 2.254546 TTGGTGCATCAAAGAGACGT 57.745 45.000 10.70 0.00 0.00 4.34
104 105 3.837213 AATTGGTGCATCAAAGAGACG 57.163 42.857 17.88 0.00 0.00 4.18
105 106 5.382618 AGAAATTGGTGCATCAAAGAGAC 57.617 39.130 17.88 7.01 0.00 3.36
106 107 6.716628 ACTTAGAAATTGGTGCATCAAAGAGA 59.283 34.615 17.88 0.00 0.00 3.10
107 108 6.917533 ACTTAGAAATTGGTGCATCAAAGAG 58.082 36.000 17.88 10.41 0.00 2.85
108 109 6.899393 ACTTAGAAATTGGTGCATCAAAGA 57.101 33.333 17.88 0.00 0.00 2.52
109 110 7.820648 ACTACTTAGAAATTGGTGCATCAAAG 58.179 34.615 17.88 10.78 0.00 2.77
110 111 7.759489 ACTACTTAGAAATTGGTGCATCAAA 57.241 32.000 17.88 0.00 0.00 2.69
111 112 8.726988 GTTACTACTTAGAAATTGGTGCATCAA 58.273 33.333 16.12 16.12 0.00 2.57
112 113 8.100791 AGTTACTACTTAGAAATTGGTGCATCA 58.899 33.333 0.00 0.00 0.00 3.07
113 114 8.494016 AGTTACTACTTAGAAATTGGTGCATC 57.506 34.615 0.00 0.00 0.00 3.91
114 115 8.863872 AAGTTACTACTTAGAAATTGGTGCAT 57.136 30.769 0.00 0.00 42.73 3.96
115 116 7.934665 TGAAGTTACTACTTAGAAATTGGTGCA 59.065 33.333 0.00 0.00 44.51 4.57
116 117 8.319143 TGAAGTTACTACTTAGAAATTGGTGC 57.681 34.615 0.00 0.00 44.51 5.01
153 154 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
154 155 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
155 156 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
174 175 9.732130 AAGAGAGTTTAGTGATTAAATGCTCTT 57.268 29.630 15.30 15.30 42.30 2.85
211 212 9.436957 CATGTAATTAACAGTTACTTCCTCTGT 57.563 33.333 0.00 0.00 42.70 3.41
212 213 9.436957 ACATGTAATTAACAGTTACTTCCTCTG 57.563 33.333 0.00 0.00 42.70 3.35
222 223 9.772973 TCAACTCAGTACATGTAATTAACAGTT 57.227 29.630 7.25 8.62 42.70 3.16
223 224 9.424319 CTCAACTCAGTACATGTAATTAACAGT 57.576 33.333 7.25 3.00 42.70 3.55
224 225 9.639601 TCTCAACTCAGTACATGTAATTAACAG 57.360 33.333 7.25 2.40 42.70 3.16
247 248 9.617975 GCAACAGCCAAATTAGATTTATATCTC 57.382 33.333 0.00 0.00 41.38 2.75
248 249 9.359653 AGCAACAGCCAAATTAGATTTATATCT 57.640 29.630 1.17 1.17 43.51 1.98
249 250 9.971922 AAGCAACAGCCAAATTAGATTTATATC 57.028 29.630 0.00 0.00 0.00 1.63
250 251 9.971922 GAAGCAACAGCCAAATTAGATTTATAT 57.028 29.630 0.00 0.00 0.00 0.86
251 252 9.189156 AGAAGCAACAGCCAAATTAGATTTATA 57.811 29.630 0.00 0.00 0.00 0.98
252 253 8.071177 AGAAGCAACAGCCAAATTAGATTTAT 57.929 30.769 0.00 0.00 0.00 1.40
253 254 7.466746 AGAAGCAACAGCCAAATTAGATTTA 57.533 32.000 0.00 0.00 0.00 1.40
254 255 6.350629 AGAAGCAACAGCCAAATTAGATTT 57.649 33.333 0.00 0.00 0.00 2.17
255 256 5.990120 AGAAGCAACAGCCAAATTAGATT 57.010 34.783 0.00 0.00 0.00 2.40
256 257 7.651027 AATAGAAGCAACAGCCAAATTAGAT 57.349 32.000 0.00 0.00 0.00 1.98
257 258 7.466746 AAATAGAAGCAACAGCCAAATTAGA 57.533 32.000 0.00 0.00 0.00 2.10
258 259 7.433425 GCTAAATAGAAGCAACAGCCAAATTAG 59.567 37.037 0.00 0.00 39.83 1.73
259 260 7.122650 AGCTAAATAGAAGCAACAGCCAAATTA 59.877 33.333 0.00 0.00 42.62 1.40
260 261 6.071165 AGCTAAATAGAAGCAACAGCCAAATT 60.071 34.615 0.00 0.00 42.62 1.82
261 262 5.420104 AGCTAAATAGAAGCAACAGCCAAAT 59.580 36.000 0.00 0.00 42.62 2.32
262 263 4.766891 AGCTAAATAGAAGCAACAGCCAAA 59.233 37.500 0.00 0.00 42.62 3.28
263 264 4.335416 AGCTAAATAGAAGCAACAGCCAA 58.665 39.130 0.00 0.00 42.62 4.52
264 265 3.955471 AGCTAAATAGAAGCAACAGCCA 58.045 40.909 0.00 0.00 42.62 4.75
265 266 7.913674 ATATAGCTAAATAGAAGCAACAGCC 57.086 36.000 0.00 0.00 42.62 4.85
266 267 9.646427 AGTATATAGCTAAATAGAAGCAACAGC 57.354 33.333 0.00 0.00 42.62 4.40
295 296 9.716556 TTCCTCTCAAGGTTAATCTAGATAAGT 57.283 33.333 5.46 0.00 43.82 2.24
297 298 9.937876 TCTTCCTCTCAAGGTTAATCTAGATAA 57.062 33.333 5.46 0.00 43.82 1.75
298 299 9.937876 TTCTTCCTCTCAAGGTTAATCTAGATA 57.062 33.333 5.46 0.00 43.82 1.98
299 300 8.846423 TTCTTCCTCTCAAGGTTAATCTAGAT 57.154 34.615 0.00 0.00 43.82 1.98
300 301 8.666129 TTTCTTCCTCTCAAGGTTAATCTAGA 57.334 34.615 0.00 0.00 43.82 2.43
301 302 9.377312 CTTTTCTTCCTCTCAAGGTTAATCTAG 57.623 37.037 0.00 0.00 43.82 2.43
302 303 9.101325 TCTTTTCTTCCTCTCAAGGTTAATCTA 57.899 33.333 0.00 0.00 43.82 1.98
303 304 7.978925 TCTTTTCTTCCTCTCAAGGTTAATCT 58.021 34.615 0.00 0.00 43.82 2.40
304 305 8.622948 TTCTTTTCTTCCTCTCAAGGTTAATC 57.377 34.615 0.00 0.00 43.82 1.75
308 309 9.898152 CTATATTCTTTTCTTCCTCTCAAGGTT 57.102 33.333 0.00 0.00 43.82 3.50
309 310 9.052365 ACTATATTCTTTTCTTCCTCTCAAGGT 57.948 33.333 0.00 0.00 43.82 3.50
310 311 9.898152 AACTATATTCTTTTCTTCCTCTCAAGG 57.102 33.333 0.00 0.00 44.89 3.61
380 381 9.571816 AAATAAATTGAACCACCAAAATGTCAT 57.428 25.926 0.00 0.00 0.00 3.06
381 382 8.970859 AAATAAATTGAACCACCAAAATGTCA 57.029 26.923 0.00 0.00 0.00 3.58
385 386 9.942850 CCTCTAAATAAATTGAACCACCAAAAT 57.057 29.630 0.00 0.00 0.00 1.82
386 387 7.875554 GCCTCTAAATAAATTGAACCACCAAAA 59.124 33.333 0.00 0.00 0.00 2.44
387 388 7.382898 GCCTCTAAATAAATTGAACCACCAAA 58.617 34.615 0.00 0.00 0.00 3.28
388 389 6.349777 CGCCTCTAAATAAATTGAACCACCAA 60.350 38.462 0.00 0.00 0.00 3.67
389 390 5.124776 CGCCTCTAAATAAATTGAACCACCA 59.875 40.000 0.00 0.00 0.00 4.17
390 391 5.355910 TCGCCTCTAAATAAATTGAACCACC 59.644 40.000 0.00 0.00 0.00 4.61
391 392 6.431198 TCGCCTCTAAATAAATTGAACCAC 57.569 37.500 0.00 0.00 0.00 4.16
392 393 6.094881 CCTTCGCCTCTAAATAAATTGAACCA 59.905 38.462 0.00 0.00 0.00 3.67
393 394 6.459710 CCCTTCGCCTCTAAATAAATTGAACC 60.460 42.308 0.00 0.00 0.00 3.62
394 395 6.459710 CCCCTTCGCCTCTAAATAAATTGAAC 60.460 42.308 0.00 0.00 0.00 3.18
395 396 5.592688 CCCCTTCGCCTCTAAATAAATTGAA 59.407 40.000 0.00 0.00 0.00 2.69
396 397 5.130350 CCCCTTCGCCTCTAAATAAATTGA 58.870 41.667 0.00 0.00 0.00 2.57
397 398 4.887655 ACCCCTTCGCCTCTAAATAAATTG 59.112 41.667 0.00 0.00 0.00 2.32
398 399 5.125367 ACCCCTTCGCCTCTAAATAAATT 57.875 39.130 0.00 0.00 0.00 1.82
399 400 4.790718 ACCCCTTCGCCTCTAAATAAAT 57.209 40.909 0.00 0.00 0.00 1.40
400 401 4.964262 TCTACCCCTTCGCCTCTAAATAAA 59.036 41.667 0.00 0.00 0.00 1.40
401 402 4.549668 TCTACCCCTTCGCCTCTAAATAA 58.450 43.478 0.00 0.00 0.00 1.40
402 403 4.188937 TCTACCCCTTCGCCTCTAAATA 57.811 45.455 0.00 0.00 0.00 1.40
403 404 3.042059 TCTACCCCTTCGCCTCTAAAT 57.958 47.619 0.00 0.00 0.00 1.40
404 405 2.537633 TCTACCCCTTCGCCTCTAAA 57.462 50.000 0.00 0.00 0.00 1.85
405 406 2.769602 ATCTACCCCTTCGCCTCTAA 57.230 50.000 0.00 0.00 0.00 2.10
406 407 3.889859 TTATCTACCCCTTCGCCTCTA 57.110 47.619 0.00 0.00 0.00 2.43
407 408 2.769602 TTATCTACCCCTTCGCCTCT 57.230 50.000 0.00 0.00 0.00 3.69
408 409 3.071167 ACATTTATCTACCCCTTCGCCTC 59.929 47.826 0.00 0.00 0.00 4.70
409 410 3.046374 ACATTTATCTACCCCTTCGCCT 58.954 45.455 0.00 0.00 0.00 5.52
410 411 3.071167 AGACATTTATCTACCCCTTCGCC 59.929 47.826 0.00 0.00 0.00 5.54
411 412 4.058817 CAGACATTTATCTACCCCTTCGC 58.941 47.826 0.00 0.00 0.00 4.70
412 413 4.058817 GCAGACATTTATCTACCCCTTCG 58.941 47.826 0.00 0.00 0.00 3.79
413 414 5.036117 TGCAGACATTTATCTACCCCTTC 57.964 43.478 0.00 0.00 0.00 3.46
414 415 5.450818 TTGCAGACATTTATCTACCCCTT 57.549 39.130 0.00 0.00 0.00 3.95
415 416 5.440610 CTTTGCAGACATTTATCTACCCCT 58.559 41.667 0.00 0.00 0.00 4.79
416 417 4.036852 GCTTTGCAGACATTTATCTACCCC 59.963 45.833 0.00 0.00 0.00 4.95
417 418 4.884164 AGCTTTGCAGACATTTATCTACCC 59.116 41.667 0.00 0.00 0.00 3.69
418 419 7.553881 TTAGCTTTGCAGACATTTATCTACC 57.446 36.000 0.00 0.00 0.00 3.18
425 426 9.323985 TGTTTAAATTTAGCTTTGCAGACATTT 57.676 25.926 0.00 0.00 0.00 2.32
426 427 8.885494 TGTTTAAATTTAGCTTTGCAGACATT 57.115 26.923 0.00 0.00 0.00 2.71
428 429 9.405587 GTATGTTTAAATTTAGCTTTGCAGACA 57.594 29.630 0.00 0.00 0.00 3.41
429 430 9.405587 TGTATGTTTAAATTTAGCTTTGCAGAC 57.594 29.630 0.00 2.21 0.00 3.51
430 431 9.624697 CTGTATGTTTAAATTTAGCTTTGCAGA 57.375 29.630 0.00 0.00 0.00 4.26
431 432 9.410556 ACTGTATGTTTAAATTTAGCTTTGCAG 57.589 29.630 0.00 7.22 0.00 4.41
432 433 9.405587 GACTGTATGTTTAAATTTAGCTTTGCA 57.594 29.630 0.00 0.00 0.00 4.08
433 434 9.626045 AGACTGTATGTTTAAATTTAGCTTTGC 57.374 29.630 0.00 0.00 0.00 3.68
436 437 9.515226 TCCAGACTGTATGTTTAAATTTAGCTT 57.485 29.630 0.93 0.00 0.00 3.74
437 438 9.515226 TTCCAGACTGTATGTTTAAATTTAGCT 57.485 29.630 0.93 0.00 0.00 3.32
438 439 9.556030 GTTCCAGACTGTATGTTTAAATTTAGC 57.444 33.333 0.93 0.00 0.00 3.09
443 444 9.912634 CAAATGTTCCAGACTGTATGTTTAAAT 57.087 29.630 0.93 0.00 0.00 1.40
444 445 8.908903 ACAAATGTTCCAGACTGTATGTTTAAA 58.091 29.630 0.93 0.00 0.00 1.52
445 446 8.458573 ACAAATGTTCCAGACTGTATGTTTAA 57.541 30.769 0.93 0.00 0.00 1.52
446 447 7.095397 CGACAAATGTTCCAGACTGTATGTTTA 60.095 37.037 0.93 0.00 0.00 2.01
447 448 6.293407 CGACAAATGTTCCAGACTGTATGTTT 60.293 38.462 0.93 0.00 0.00 2.83
448 449 5.179368 CGACAAATGTTCCAGACTGTATGTT 59.821 40.000 0.93 0.00 0.00 2.71
449 450 4.690748 CGACAAATGTTCCAGACTGTATGT 59.309 41.667 0.93 0.00 0.00 2.29
450 451 4.690748 ACGACAAATGTTCCAGACTGTATG 59.309 41.667 0.93 0.00 0.00 2.39
451 452 4.894784 ACGACAAATGTTCCAGACTGTAT 58.105 39.130 0.93 0.00 0.00 2.29
452 453 4.330944 ACGACAAATGTTCCAGACTGTA 57.669 40.909 0.93 0.00 0.00 2.74
453 454 3.194005 ACGACAAATGTTCCAGACTGT 57.806 42.857 0.93 0.00 0.00 3.55
454 455 3.849645 GCAACGACAAATGTTCCAGACTG 60.850 47.826 0.00 0.00 0.00 3.51
455 456 2.290641 GCAACGACAAATGTTCCAGACT 59.709 45.455 0.00 0.00 0.00 3.24
456 457 2.650608 GCAACGACAAATGTTCCAGAC 58.349 47.619 0.00 0.00 0.00 3.51
457 458 1.262950 CGCAACGACAAATGTTCCAGA 59.737 47.619 0.00 0.00 0.00 3.86
458 459 1.262950 TCGCAACGACAAATGTTCCAG 59.737 47.619 0.00 0.00 0.00 3.86
459 460 1.300481 TCGCAACGACAAATGTTCCA 58.700 45.000 0.00 0.00 0.00 3.53
470 471 7.696755 TGTCTAAGTTATATAAGTCGCAACGA 58.303 34.615 3.27 0.00 0.00 3.85
471 472 7.903452 TGTCTAAGTTATATAAGTCGCAACG 57.097 36.000 3.27 0.00 0.00 4.10
501 502 9.772973 ACATACATTTCCTAATCGCATTACTTA 57.227 29.630 0.00 0.00 0.00 2.24
502 503 8.677148 ACATACATTTCCTAATCGCATTACTT 57.323 30.769 0.00 0.00 0.00 2.24
503 504 8.559536 CAACATACATTTCCTAATCGCATTACT 58.440 33.333 0.00 0.00 0.00 2.24
504 505 7.323656 GCAACATACATTTCCTAATCGCATTAC 59.676 37.037 0.00 0.00 0.00 1.89
505 506 7.228507 AGCAACATACATTTCCTAATCGCATTA 59.771 33.333 0.00 0.00 0.00 1.90
506 507 6.039717 AGCAACATACATTTCCTAATCGCATT 59.960 34.615 0.00 0.00 0.00 3.56
507 508 5.532406 AGCAACATACATTTCCTAATCGCAT 59.468 36.000 0.00 0.00 0.00 4.73
508 509 4.881273 AGCAACATACATTTCCTAATCGCA 59.119 37.500 0.00 0.00 0.00 5.10
509 510 5.424121 AGCAACATACATTTCCTAATCGC 57.576 39.130 0.00 0.00 0.00 4.58
510 511 8.011673 CACATAGCAACATACATTTCCTAATCG 58.988 37.037 0.00 0.00 0.00 3.34
511 512 9.056005 TCACATAGCAACATACATTTCCTAATC 57.944 33.333 0.00 0.00 0.00 1.75
512 513 8.978874 TCACATAGCAACATACATTTCCTAAT 57.021 30.769 0.00 0.00 0.00 1.73
513 514 8.046708 ACTCACATAGCAACATACATTTCCTAA 58.953 33.333 0.00 0.00 0.00 2.69
514 515 7.495606 CACTCACATAGCAACATACATTTCCTA 59.504 37.037 0.00 0.00 0.00 2.94
515 516 6.317140 CACTCACATAGCAACATACATTTCCT 59.683 38.462 0.00 0.00 0.00 3.36
516 517 6.094048 ACACTCACATAGCAACATACATTTCC 59.906 38.462 0.00 0.00 0.00 3.13
517 518 6.963242 CACACTCACATAGCAACATACATTTC 59.037 38.462 0.00 0.00 0.00 2.17
518 519 6.654582 TCACACTCACATAGCAACATACATTT 59.345 34.615 0.00 0.00 0.00 2.32
519 520 6.172630 TCACACTCACATAGCAACATACATT 58.827 36.000 0.00 0.00 0.00 2.71
520 521 5.733676 TCACACTCACATAGCAACATACAT 58.266 37.500 0.00 0.00 0.00 2.29
521 522 5.047377 TCTCACACTCACATAGCAACATACA 60.047 40.000 0.00 0.00 0.00 2.29
522 523 5.289675 GTCTCACACTCACATAGCAACATAC 59.710 44.000 0.00 0.00 0.00 2.39
523 524 5.185828 AGTCTCACACTCACATAGCAACATA 59.814 40.000 0.00 0.00 0.00 2.29
524 525 4.020751 AGTCTCACACTCACATAGCAACAT 60.021 41.667 0.00 0.00 0.00 2.71
525 526 3.321968 AGTCTCACACTCACATAGCAACA 59.678 43.478 0.00 0.00 0.00 3.33
526 527 3.677121 CAGTCTCACACTCACATAGCAAC 59.323 47.826 0.00 0.00 30.26 4.17
527 528 3.321968 ACAGTCTCACACTCACATAGCAA 59.678 43.478 0.00 0.00 30.26 3.91
528 529 2.893489 ACAGTCTCACACTCACATAGCA 59.107 45.455 0.00 0.00 30.26 3.49
529 530 3.249091 CACAGTCTCACACTCACATAGC 58.751 50.000 0.00 0.00 30.26 2.97
530 531 4.217334 AGACACAGTCTCACACTCACATAG 59.783 45.833 0.00 0.00 38.71 2.23
531 532 4.145052 AGACACAGTCTCACACTCACATA 58.855 43.478 0.00 0.00 38.71 2.29
532 533 2.961741 AGACACAGTCTCACACTCACAT 59.038 45.455 0.00 0.00 38.71 3.21
533 534 2.379005 AGACACAGTCTCACACTCACA 58.621 47.619 0.00 0.00 38.71 3.58
534 535 3.566322 AGTAGACACAGTCTCACACTCAC 59.434 47.826 2.48 0.00 42.40 3.51
535 536 3.565902 CAGTAGACACAGTCTCACACTCA 59.434 47.826 2.48 0.00 42.40 3.41
536 537 3.566322 ACAGTAGACACAGTCTCACACTC 59.434 47.826 2.48 0.00 42.40 3.51
537 538 3.556999 ACAGTAGACACAGTCTCACACT 58.443 45.455 2.48 0.00 42.40 3.55
538 539 3.992260 ACAGTAGACACAGTCTCACAC 57.008 47.619 2.48 0.00 42.40 3.82
539 540 4.497507 CGAAACAGTAGACACAGTCTCACA 60.498 45.833 2.48 0.00 42.40 3.58
540 541 3.975670 CGAAACAGTAGACACAGTCTCAC 59.024 47.826 2.48 1.70 42.40 3.51
541 542 3.550233 GCGAAACAGTAGACACAGTCTCA 60.550 47.826 2.48 0.00 42.40 3.27
542 543 2.981140 GCGAAACAGTAGACACAGTCTC 59.019 50.000 2.48 0.00 42.40 3.36
543 544 2.361119 TGCGAAACAGTAGACACAGTCT 59.639 45.455 4.93 4.93 45.54 3.24
544 545 2.471743 GTGCGAAACAGTAGACACAGTC 59.528 50.000 0.00 0.00 0.00 3.51
545 546 2.100916 AGTGCGAAACAGTAGACACAGT 59.899 45.455 0.00 0.00 0.00 3.55
546 547 2.743938 AGTGCGAAACAGTAGACACAG 58.256 47.619 0.00 0.00 0.00 3.66
547 548 2.882927 AGTGCGAAACAGTAGACACA 57.117 45.000 0.00 0.00 0.00 3.72
548 549 3.612860 CCATAGTGCGAAACAGTAGACAC 59.387 47.826 0.00 0.00 37.60 3.67
549 550 3.257375 ACCATAGTGCGAAACAGTAGACA 59.743 43.478 0.00 0.00 37.60 3.41
550 551 3.846360 ACCATAGTGCGAAACAGTAGAC 58.154 45.455 0.00 0.00 37.60 2.59
551 552 3.762288 AGACCATAGTGCGAAACAGTAGA 59.238 43.478 0.00 0.00 37.60 2.59
552 553 4.111375 AGACCATAGTGCGAAACAGTAG 57.889 45.455 0.00 0.00 37.60 2.57
553 554 5.451381 CCATAGACCATAGTGCGAAACAGTA 60.451 44.000 0.00 0.00 38.55 2.74
554 555 4.433615 CATAGACCATAGTGCGAAACAGT 58.566 43.478 0.00 0.00 35.57 3.55
555 556 3.804325 CCATAGACCATAGTGCGAAACAG 59.196 47.826 0.00 0.00 0.00 3.16
556 557 3.792401 CCATAGACCATAGTGCGAAACA 58.208 45.455 0.00 0.00 0.00 2.83
557 558 2.544267 GCCATAGACCATAGTGCGAAAC 59.456 50.000 0.00 0.00 0.00 2.78
558 559 2.434336 AGCCATAGACCATAGTGCGAAA 59.566 45.455 0.00 0.00 0.00 3.46
559 560 2.039418 AGCCATAGACCATAGTGCGAA 58.961 47.619 0.00 0.00 0.00 4.70
560 561 1.704641 AGCCATAGACCATAGTGCGA 58.295 50.000 0.00 0.00 0.00 5.10
561 562 2.558795 AGTAGCCATAGACCATAGTGCG 59.441 50.000 0.00 0.00 0.00 5.34
562 563 3.322254 ACAGTAGCCATAGACCATAGTGC 59.678 47.826 0.00 0.00 0.00 4.40
563 564 5.292765 CAACAGTAGCCATAGACCATAGTG 58.707 45.833 0.00 0.00 0.00 2.74
564 565 4.202264 GCAACAGTAGCCATAGACCATAGT 60.202 45.833 0.00 0.00 0.00 2.12
565 566 4.039730 AGCAACAGTAGCCATAGACCATAG 59.960 45.833 0.00 0.00 0.00 2.23
566 567 3.967326 AGCAACAGTAGCCATAGACCATA 59.033 43.478 0.00 0.00 0.00 2.74
567 568 2.774234 AGCAACAGTAGCCATAGACCAT 59.226 45.455 0.00 0.00 0.00 3.55
568 569 2.187958 AGCAACAGTAGCCATAGACCA 58.812 47.619 0.00 0.00 0.00 4.02
569 570 2.990066 AGCAACAGTAGCCATAGACC 57.010 50.000 0.00 0.00 0.00 3.85
570 571 4.386867 TGTAGCAACAGTAGCCATAGAC 57.613 45.455 0.00 0.00 0.00 2.59
571 572 4.141937 CCTTGTAGCAACAGTAGCCATAGA 60.142 45.833 0.00 0.00 36.83 1.98
613 615 4.883354 CAGCGGGGCCAGGATTCC 62.883 72.222 4.39 0.00 0.00 3.01
630 632 1.464608 TCAAACATCGCACTAAGCAGC 59.535 47.619 0.00 0.00 46.13 5.25
642 644 5.408604 AGGTTACATCTGTTCGTCAAACATC 59.591 40.000 0.00 0.00 46.53 3.06
651 653 3.914312 AGACACAGGTTACATCTGTTCG 58.086 45.455 0.00 0.00 42.87 3.95
666 668 3.244044 TGCTGCATACAGTACAAGACACA 60.244 43.478 0.00 0.00 46.30 3.72
670 672 3.961480 ACTGCTGCATACAGTACAAGA 57.039 42.857 18.17 0.00 46.32 3.02
688 690 1.202639 TGCGATCTTGTGGACACAACT 60.203 47.619 13.42 4.76 45.42 3.16
689 691 1.225855 TGCGATCTTGTGGACACAAC 58.774 50.000 13.42 5.04 45.42 3.32
706 708 0.685458 ACAAAGGGATGCCAGGATGC 60.685 55.000 5.86 0.00 31.97 3.91
810 815 3.317149 TGTCCGTCCGTCCTATCTTTATG 59.683 47.826 0.00 0.00 0.00 1.90
834 839 0.172578 TCGCCATCGTTGTGGACTAG 59.827 55.000 8.13 0.00 42.02 2.57
835 840 0.172578 CTCGCCATCGTTGTGGACTA 59.827 55.000 8.13 0.00 42.02 2.59
856 865 0.320421 TCTTCTTCCTTTGGTCGCCG 60.320 55.000 0.00 0.00 0.00 6.46
882 891 1.024271 TGCAGACAGAACAAACAGCC 58.976 50.000 0.00 0.00 0.00 4.85
883 892 2.849880 TTGCAGACAGAACAAACAGC 57.150 45.000 0.00 0.00 0.00 4.40
884 893 4.036027 ACTGATTGCAGACAGAACAAACAG 59.964 41.667 22.65 9.72 45.17 3.16
885 894 3.947196 ACTGATTGCAGACAGAACAAACA 59.053 39.130 22.65 0.00 45.17 2.83
902 911 3.374678 GTCGTCTCGAGAGGTTAACTGAT 59.625 47.826 28.71 0.00 36.23 2.90
906 922 1.202009 CCGTCGTCTCGAGAGGTTAAC 60.202 57.143 28.71 20.40 36.23 2.01
909 925 2.688794 GCCGTCGTCTCGAGAGGTT 61.689 63.158 28.71 0.00 37.25 3.50
930 949 1.610886 GGGTGCAGGACAAGTTACTCC 60.611 57.143 0.00 0.00 0.00 3.85
963 992 1.146637 CAGACACAGCTTCACTCTGC 58.853 55.000 0.00 0.00 35.04 4.26
1335 1406 1.577922 GACGTAGGACAGCACGACA 59.422 57.895 0.62 0.00 40.56 4.35
1344 1415 4.487412 CCGGCCACGACGTAGGAC 62.487 72.222 17.18 14.20 44.60 3.85
1479 1550 4.115199 AGGATGAGGTTGGCGGCC 62.115 66.667 13.32 13.32 0.00 6.13
1647 1718 2.188829 CATGATCGCCGTGGCCAAT 61.189 57.895 7.24 0.00 37.98 3.16
1764 1835 4.314440 AGGTTGCTCGGCTTCGCA 62.314 61.111 0.00 0.00 0.00 5.10
2040 2117 3.410628 TGCATCCACCGCATCCCT 61.411 61.111 0.00 0.00 33.55 4.20
2394 2471 3.685214 GACGATCGCCAGCACGAGT 62.685 63.158 16.60 0.00 46.69 4.18
2595 2678 2.555199 CCCATGAGGAAGATGTTCGTC 58.445 52.381 16.10 16.10 44.49 4.20
2823 2915 1.753078 TGACCCAGATCGAGACGGG 60.753 63.158 12.95 12.95 44.88 5.28
2866 2958 6.615839 GCATCTTCGTTGTCAAACAGTACTAC 60.616 42.308 0.00 0.00 35.94 2.73
2973 3069 7.086376 ACGAAGAAATTGACTGATCCAAATTG 58.914 34.615 0.00 0.00 0.00 2.32
2982 3078 4.364860 TCAACGACGAAGAAATTGACTGA 58.635 39.130 0.00 0.00 0.00 3.41
2986 3082 6.740905 GCAAATATCAACGACGAAGAAATTGA 59.259 34.615 0.00 0.00 34.03 2.57
2996 3094 4.105486 TCTCAGAGCAAATATCAACGACG 58.895 43.478 0.00 0.00 0.00 5.12
3027 3125 3.038710 CACAAACAGAAGAGAAAAGCGC 58.961 45.455 0.00 0.00 0.00 5.92
3056 3154 8.405531 CAAGAGACACCATAAACAGAAGAAAAA 58.594 33.333 0.00 0.00 0.00 1.94
3057 3155 7.556275 ACAAGAGACACCATAAACAGAAGAAAA 59.444 33.333 0.00 0.00 0.00 2.29
3058 3156 7.054124 ACAAGAGACACCATAAACAGAAGAAA 58.946 34.615 0.00 0.00 0.00 2.52
3059 3157 6.591935 ACAAGAGACACCATAAACAGAAGAA 58.408 36.000 0.00 0.00 0.00 2.52
3060 3158 6.174720 ACAAGAGACACCATAAACAGAAGA 57.825 37.500 0.00 0.00 0.00 2.87
3061 3159 6.867662 AACAAGAGACACCATAAACAGAAG 57.132 37.500 0.00 0.00 0.00 2.85
3070 3172 2.571212 TGCGAAAACAAGAGACACCAT 58.429 42.857 0.00 0.00 0.00 3.55
3077 3179 1.681264 AGGGGTTTGCGAAAACAAGAG 59.319 47.619 20.48 0.00 34.46 2.85
3087 3189 1.747367 TGGCGAATAGGGGTTTGCG 60.747 57.895 0.00 0.00 39.01 4.85
3090 3192 0.988832 TCAGTGGCGAATAGGGGTTT 59.011 50.000 0.00 0.00 0.00 3.27
3151 3255 1.923356 AACATCAAAATGGTCCGGCT 58.077 45.000 0.00 0.00 37.19 5.52
3157 3261 8.674263 TGCAGAAATTAAAACATCAAAATGGT 57.326 26.923 0.00 0.00 37.19 3.55
3205 3328 6.147821 TCGGAAAGTGCAAACATTTTGAAAAA 59.852 30.769 2.80 0.00 36.02 1.94
3289 3416 8.652592 TTTTGAAAAGAAGCGAACAATTTTTG 57.347 26.923 0.00 0.00 0.00 2.44
3405 6771 8.663911 TGGAATCGCCAATATTTTTGAAATTTC 58.336 29.630 11.41 11.41 45.87 2.17
3406 6772 8.558973 TGGAATCGCCAATATTTTTGAAATTT 57.441 26.923 0.00 0.00 45.87 1.82
3422 6793 4.082463 TGTGACCTAAAATTTGGAATCGCC 60.082 41.667 1.72 0.00 37.10 5.54
3458 6829 9.800299 AAATGTTCGTGTTTTGAAAAAGTTAAC 57.200 25.926 0.00 0.00 0.00 2.01
3461 6832 8.769891 AGAAAATGTTCGTGTTTTGAAAAAGTT 58.230 25.926 0.00 0.00 38.90 2.66
3462 6833 8.305441 AGAAAATGTTCGTGTTTTGAAAAAGT 57.695 26.923 0.00 0.00 38.90 2.66
3508 6882 9.585099 CCGAATTTCTTCATCATTTTCCAATTA 57.415 29.630 0.00 0.00 0.00 1.40
3513 6887 6.207691 TCCCGAATTTCTTCATCATTTTCC 57.792 37.500 0.00 0.00 0.00 3.13
3520 6894 3.561725 AGCGATTCCCGAATTTCTTCATC 59.438 43.478 0.00 0.00 41.76 2.92
3522 6896 2.985896 AGCGATTCCCGAATTTCTTCA 58.014 42.857 0.00 0.00 41.76 3.02
3652 7027 9.541143 GAAACTGAGAACATTTTTAAAATCCCA 57.459 29.630 0.55 0.00 30.95 4.37
3701 7076 8.267620 ACTTTTCTTAAAGCACAAGCATTTTT 57.732 26.923 0.00 0.00 43.72 1.94
3781 7160 6.774673 GGGGAATAACCTTTGAAAATCCAAA 58.225 36.000 0.00 0.00 38.98 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.