Multiple sequence alignment - TraesCS5B01G255100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G255100 chr5B 100.000 5171 0 0 1 5171 437799053 437804223 0.000000e+00 9550.0
1 TraesCS5B01G255100 chr5B 97.351 604 16 0 4568 5171 556175423 556174820 0.000000e+00 1027.0
2 TraesCS5B01G255100 chr5B 95.104 531 22 2 1 531 538641510 538640984 0.000000e+00 833.0
3 TraesCS5B01G255100 chr5B 96.552 261 4 3 531 786 588688314 588688054 1.330000e-115 427.0
4 TraesCS5B01G255100 chr5B 98.611 72 1 0 810 881 588688071 588688000 1.510000e-25 128.0
5 TraesCS5B01G255100 chr3B 94.883 3557 132 18 1036 4566 672873852 672870320 0.000000e+00 5515.0
6 TraesCS5B01G255100 chr3B 97.190 605 16 1 4568 5171 38044616 38044012 0.000000e+00 1022.0
7 TraesCS5B01G255100 chr3D 93.249 3555 184 20 1036 4564 511350596 511347072 0.000000e+00 5184.0
8 TraesCS5B01G255100 chr3D 90.909 319 23 5 219 531 590598963 590599281 1.720000e-114 424.0
9 TraesCS5B01G255100 chr3D 88.050 159 13 4 630 786 43020229 43020383 3.180000e-42 183.0
10 TraesCS5B01G255100 chr3D 96.875 64 2 0 810 873 43020366 43020429 1.970000e-19 108.0
11 TraesCS5B01G255100 chr3A 92.359 3468 206 25 1036 4473 647482773 647479335 0.000000e+00 4881.0
12 TraesCS5B01G255100 chr3A 92.553 94 6 1 4471 4564 647479306 647479214 3.250000e-27 134.0
13 TraesCS5B01G255100 chr6B 98.520 608 9 0 4564 5171 567498209 567497602 0.000000e+00 1074.0
14 TraesCS5B01G255100 chr6B 97.360 606 16 0 4566 5171 507696001 507695396 0.000000e+00 1031.0
15 TraesCS5B01G255100 chr1B 98.010 603 12 0 4569 5171 551886322 551885720 0.000000e+00 1048.0
16 TraesCS5B01G255100 chr1B 97.690 606 14 0 4566 5171 675679362 675678757 0.000000e+00 1042.0
17 TraesCS5B01G255100 chr1B 97.020 604 18 0 4568 5171 545227296 545227899 0.000000e+00 1016.0
18 TraesCS5B01G255100 chr1B 94.206 535 21 3 1 531 586604156 586604684 0.000000e+00 808.0
19 TraesCS5B01G255100 chr7B 97.525 606 15 0 4566 5171 493502104 493502709 0.000000e+00 1037.0
20 TraesCS5B01G255100 chr7B 95.703 256 8 2 531 786 407604634 407604382 4.820000e-110 409.0
21 TraesCS5B01G255100 chr7B 97.222 72 2 0 810 881 407604399 407604328 7.030000e-24 122.0
22 TraesCS5B01G255100 chr2B 97.030 606 18 0 4566 5171 783885305 783884700 0.000000e+00 1020.0
23 TraesCS5B01G255100 chr1D 94.518 529 26 2 3 531 465471405 465471930 0.000000e+00 813.0
24 TraesCS5B01G255100 chr1D 94.902 255 12 1 1 255 319583266 319583519 1.040000e-106 398.0
25 TraesCS5B01G255100 chr4B 94.350 531 24 1 1 531 155142898 155142374 0.000000e+00 809.0
26 TraesCS5B01G255100 chr5A 91.948 534 37 4 1 531 187467615 187468145 0.000000e+00 743.0
27 TraesCS5B01G255100 chr5D 93.359 256 14 2 1 255 151269726 151269473 4.890000e-100 375.0
28 TraesCS5B01G255100 chr2D 87.662 308 12 8 227 531 187411025 187410741 8.300000e-88 335.0
29 TraesCS5B01G255100 chr2D 85.841 113 15 1 371 483 365281516 365281627 9.100000e-23 119.0
30 TraesCS5B01G255100 chr4D 85.214 257 15 7 531 786 197768665 197768431 5.170000e-60 243.0
31 TraesCS5B01G255100 chr4D 98.611 72 0 1 810 881 197768448 197768378 5.440000e-25 126.0
32 TraesCS5B01G255100 chrUn 92.073 164 12 1 71 234 122405225 122405387 4.030000e-56 230.0
33 TraesCS5B01G255100 chr1A 90.278 72 7 0 810 881 526735939 526736010 1.530000e-15 95.3
34 TraesCS5B01G255100 chr1A 96.491 57 2 0 810 866 526736202 526736258 1.530000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G255100 chr5B 437799053 437804223 5170 False 9550.0 9550 100.000 1 5171 1 chr5B.!!$F1 5170
1 TraesCS5B01G255100 chr5B 556174820 556175423 603 True 1027.0 1027 97.351 4568 5171 1 chr5B.!!$R2 603
2 TraesCS5B01G255100 chr5B 538640984 538641510 526 True 833.0 833 95.104 1 531 1 chr5B.!!$R1 530
3 TraesCS5B01G255100 chr3B 672870320 672873852 3532 True 5515.0 5515 94.883 1036 4566 1 chr3B.!!$R2 3530
4 TraesCS5B01G255100 chr3B 38044012 38044616 604 True 1022.0 1022 97.190 4568 5171 1 chr3B.!!$R1 603
5 TraesCS5B01G255100 chr3D 511347072 511350596 3524 True 5184.0 5184 93.249 1036 4564 1 chr3D.!!$R1 3528
6 TraesCS5B01G255100 chr3A 647479214 647482773 3559 True 2507.5 4881 92.456 1036 4564 2 chr3A.!!$R1 3528
7 TraesCS5B01G255100 chr6B 567497602 567498209 607 True 1074.0 1074 98.520 4564 5171 1 chr6B.!!$R2 607
8 TraesCS5B01G255100 chr6B 507695396 507696001 605 True 1031.0 1031 97.360 4566 5171 1 chr6B.!!$R1 605
9 TraesCS5B01G255100 chr1B 551885720 551886322 602 True 1048.0 1048 98.010 4569 5171 1 chr1B.!!$R1 602
10 TraesCS5B01G255100 chr1B 675678757 675679362 605 True 1042.0 1042 97.690 4566 5171 1 chr1B.!!$R2 605
11 TraesCS5B01G255100 chr1B 545227296 545227899 603 False 1016.0 1016 97.020 4568 5171 1 chr1B.!!$F1 603
12 TraesCS5B01G255100 chr1B 586604156 586604684 528 False 808.0 808 94.206 1 531 1 chr1B.!!$F2 530
13 TraesCS5B01G255100 chr7B 493502104 493502709 605 False 1037.0 1037 97.525 4566 5171 1 chr7B.!!$F1 605
14 TraesCS5B01G255100 chr2B 783884700 783885305 605 True 1020.0 1020 97.030 4566 5171 1 chr2B.!!$R1 605
15 TraesCS5B01G255100 chr1D 465471405 465471930 525 False 813.0 813 94.518 3 531 1 chr1D.!!$F2 528
16 TraesCS5B01G255100 chr4B 155142374 155142898 524 True 809.0 809 94.350 1 531 1 chr4B.!!$R1 530
17 TraesCS5B01G255100 chr5A 187467615 187468145 530 False 743.0 743 91.948 1 531 1 chr5A.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 705 0.103026 CGACGCATTGGAGGATGAGA 59.897 55.000 0.00 0.00 32.15 3.27 F
1017 1031 0.039617 CCATGACGATCTCCGAGCTC 60.040 60.000 2.73 2.73 41.76 4.09 F
1020 1034 0.179234 TGACGATCTCCGAGCTCTCT 59.821 55.000 12.85 0.00 41.76 3.10 F
1675 1710 0.239879 CGAGGCGCTAGATCTCTTCC 59.760 60.000 7.64 0.00 0.00 3.46 F
1799 1858 0.465460 AAAGCCAAGGAACACGCTGA 60.465 50.000 0.00 0.00 0.00 4.26 F
1832 1891 1.143813 ATCCATGCCTCGAGGGATTT 58.856 50.000 33.42 19.18 44.30 2.17 F
3004 3063 1.136305 GTGCCAAGCTACGGATGTCTA 59.864 52.381 6.28 0.00 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 1767 0.391130 CATCGACCCTTTTGCTCCGA 60.391 55.000 0.00 0.0 0.00 4.55 R
1832 1891 1.143684 GCTCATCAGCCTCCCCAATTA 59.856 52.381 0.00 0.0 40.14 1.40 R
1845 1904 1.153309 CATGCTCGGGTGCTCATCA 60.153 57.895 0.00 0.0 0.00 3.07 R
2970 3029 1.812235 TGGCACGTCTCGAGTACTTA 58.188 50.000 13.13 0.0 0.00 2.24 R
3004 3063 2.597510 GCCTTCCACGCCAAGGTT 60.598 61.111 8.88 0.0 42.35 3.50 R
3812 3871 5.828747 TCTGGTAAGCTTGTCGATATACAC 58.171 41.667 9.86 0.0 0.00 2.90 R
4619 4716 1.078115 AAACCCCTACCCAAACGGAT 58.922 50.000 0.00 0.0 34.64 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.286320 GGCGCATCCGACGGAGAT 62.286 66.667 22.99 3.03 34.05 2.75
249 253 3.375922 TCGTGGTTGGTTTGACTCTTTTC 59.624 43.478 0.00 0.00 0.00 2.29
250 254 3.377172 CGTGGTTGGTTTGACTCTTTTCT 59.623 43.478 0.00 0.00 0.00 2.52
251 255 4.142469 CGTGGTTGGTTTGACTCTTTTCTT 60.142 41.667 0.00 0.00 0.00 2.52
252 256 5.621329 CGTGGTTGGTTTGACTCTTTTCTTT 60.621 40.000 0.00 0.00 0.00 2.52
253 257 6.163476 GTGGTTGGTTTGACTCTTTTCTTTT 58.837 36.000 0.00 0.00 0.00 2.27
254 258 6.310467 GTGGTTGGTTTGACTCTTTTCTTTTC 59.690 38.462 0.00 0.00 0.00 2.29
280 290 6.471976 TTGACTTGATTGTTTCTCAGATCG 57.528 37.500 0.00 0.00 0.00 3.69
301 311 5.359756 TCGGACTCGTACTAGCAATACTTA 58.640 41.667 0.00 0.00 37.69 2.24
545 559 1.723870 GGGTGACGATGATTGCAGC 59.276 57.895 0.00 0.00 0.00 5.25
546 560 1.026182 GGGTGACGATGATTGCAGCA 61.026 55.000 0.00 0.00 0.00 4.41
547 561 0.804364 GGTGACGATGATTGCAGCAA 59.196 50.000 11.07 11.07 0.00 3.91
548 562 1.199789 GGTGACGATGATTGCAGCAAA 59.800 47.619 12.97 0.00 0.00 3.68
549 563 2.351641 GGTGACGATGATTGCAGCAAAA 60.352 45.455 12.97 3.97 0.00 2.44
550 564 2.912967 GTGACGATGATTGCAGCAAAAG 59.087 45.455 12.97 4.67 0.00 2.27
551 565 2.095110 TGACGATGATTGCAGCAAAAGG 60.095 45.455 12.97 2.89 0.00 3.11
552 566 1.274596 CGATGATTGCAGCAAAAGGC 58.725 50.000 12.97 2.95 45.30 4.35
562 576 3.755697 GCAAAAGGCTGTCTTCGTC 57.244 52.632 0.00 0.00 40.25 4.20
563 577 0.110644 GCAAAAGGCTGTCTTCGTCG 60.111 55.000 0.00 0.00 40.25 5.12
564 578 1.217882 CAAAAGGCTGTCTTCGTCGT 58.782 50.000 0.00 0.00 33.94 4.34
565 579 1.597663 CAAAAGGCTGTCTTCGTCGTT 59.402 47.619 0.00 0.00 33.94 3.85
566 580 1.217882 AAAGGCTGTCTTCGTCGTTG 58.782 50.000 0.00 0.00 33.94 4.10
567 581 1.222115 AAGGCTGTCTTCGTCGTTGC 61.222 55.000 0.00 0.00 0.00 4.17
568 582 1.954146 GGCTGTCTTCGTCGTTGCA 60.954 57.895 0.00 0.00 0.00 4.08
569 583 1.488957 GCTGTCTTCGTCGTTGCAG 59.511 57.895 0.00 0.00 0.00 4.41
570 584 1.215655 GCTGTCTTCGTCGTTGCAGT 61.216 55.000 0.00 0.00 0.00 4.40
571 585 0.778815 CTGTCTTCGTCGTTGCAGTC 59.221 55.000 0.00 0.00 0.00 3.51
572 586 0.933047 TGTCTTCGTCGTTGCAGTCG 60.933 55.000 6.98 6.98 0.00 4.18
573 587 0.933509 GTCTTCGTCGTTGCAGTCGT 60.934 55.000 11.83 0.00 0.00 4.34
574 588 0.587768 TCTTCGTCGTTGCAGTCGTA 59.412 50.000 11.83 0.00 0.00 3.43
575 589 0.975544 CTTCGTCGTTGCAGTCGTAG 59.024 55.000 11.83 8.20 0.00 3.51
576 590 1.000233 TTCGTCGTTGCAGTCGTAGC 61.000 55.000 11.83 0.00 0.00 3.58
577 591 1.442184 CGTCGTTGCAGTCGTAGCT 60.442 57.895 11.83 0.00 0.00 3.32
578 592 1.396543 CGTCGTTGCAGTCGTAGCTC 61.397 60.000 11.83 0.00 0.00 4.09
579 593 1.071567 GTCGTTGCAGTCGTAGCTCC 61.072 60.000 11.83 0.00 0.00 4.70
580 594 2.152699 CGTTGCAGTCGTAGCTCCG 61.153 63.158 0.00 0.00 0.00 4.63
581 595 1.211969 GTTGCAGTCGTAGCTCCGA 59.788 57.895 0.00 0.00 33.79 4.55
589 603 2.561733 TCGTAGCTCCGACTTGAATG 57.438 50.000 0.00 0.00 30.63 2.67
590 604 1.134367 TCGTAGCTCCGACTTGAATGG 59.866 52.381 0.00 0.00 30.63 3.16
591 605 1.134367 CGTAGCTCCGACTTGAATGGA 59.866 52.381 0.00 0.00 0.00 3.41
592 606 2.223829 CGTAGCTCCGACTTGAATGGAT 60.224 50.000 0.00 0.00 0.00 3.41
593 607 3.738281 CGTAGCTCCGACTTGAATGGATT 60.738 47.826 0.00 0.00 0.00 3.01
594 608 3.356529 AGCTCCGACTTGAATGGATTT 57.643 42.857 0.00 0.00 0.00 2.17
595 609 4.487714 AGCTCCGACTTGAATGGATTTA 57.512 40.909 0.00 0.00 0.00 1.40
596 610 4.446371 AGCTCCGACTTGAATGGATTTAG 58.554 43.478 0.00 0.00 0.00 1.85
597 611 3.002759 GCTCCGACTTGAATGGATTTAGC 59.997 47.826 0.00 0.00 0.00 3.09
598 612 4.191544 CTCCGACTTGAATGGATTTAGCA 58.808 43.478 0.00 0.00 0.00 3.49
599 613 4.584874 TCCGACTTGAATGGATTTAGCAA 58.415 39.130 0.00 0.00 0.00 3.91
600 614 5.007034 TCCGACTTGAATGGATTTAGCAAA 58.993 37.500 0.00 0.00 0.00 3.68
601 615 5.475220 TCCGACTTGAATGGATTTAGCAAAA 59.525 36.000 0.00 0.00 0.00 2.44
602 616 6.015856 TCCGACTTGAATGGATTTAGCAAAAA 60.016 34.615 0.00 0.00 0.00 1.94
622 636 1.223187 AAAACGCTGGTTCCAGTACG 58.777 50.000 18.42 16.07 34.62 3.67
623 637 1.226030 AAACGCTGGTTCCAGTACGC 61.226 55.000 18.42 5.85 34.62 4.42
624 638 2.813908 CGCTGGTTCCAGTACGCC 60.814 66.667 18.42 2.72 36.52 5.68
625 639 2.813908 GCTGGTTCCAGTACGCCG 60.814 66.667 18.42 0.00 36.52 6.46
626 640 2.125673 CTGGTTCCAGTACGCCGG 60.126 66.667 10.40 0.00 0.00 6.13
627 641 3.659089 CTGGTTCCAGTACGCCGGG 62.659 68.421 2.18 0.00 0.00 5.73
628 642 3.384532 GGTTCCAGTACGCCGGGA 61.385 66.667 2.18 0.00 0.00 5.14
629 643 2.125793 GTTCCAGTACGCCGGGAC 60.126 66.667 2.18 0.00 0.00 4.46
648 662 2.180017 CTGGTTTCAGCATGCGGC 59.820 61.111 13.45 0.00 45.30 6.53
649 663 3.346631 CTGGTTTCAGCATGCGGCC 62.347 63.158 13.45 9.32 46.50 6.13
650 664 4.481112 GGTTTCAGCATGCGGCCG 62.481 66.667 24.05 24.05 46.50 6.13
651 665 3.737172 GTTTCAGCATGCGGCCGT 61.737 61.111 28.70 4.23 46.50 5.68
652 666 3.430862 TTTCAGCATGCGGCCGTC 61.431 61.111 28.70 19.46 46.50 4.79
653 667 4.695993 TTCAGCATGCGGCCGTCA 62.696 61.111 28.70 24.58 46.50 4.35
684 698 2.885644 CCGGACGACGCATTGGAG 60.886 66.667 0.00 0.00 42.52 3.86
685 699 2.885644 CGGACGACGCATTGGAGG 60.886 66.667 0.00 0.00 34.82 4.30
686 700 2.577059 GGACGACGCATTGGAGGA 59.423 61.111 0.00 0.00 0.00 3.71
687 701 1.144057 GGACGACGCATTGGAGGAT 59.856 57.895 0.00 0.00 0.00 3.24
688 702 1.154205 GGACGACGCATTGGAGGATG 61.154 60.000 0.00 0.00 0.00 3.51
689 703 0.179111 GACGACGCATTGGAGGATGA 60.179 55.000 0.00 0.00 0.00 2.92
690 704 0.179100 ACGACGCATTGGAGGATGAG 60.179 55.000 0.00 0.00 33.69 2.90
691 705 0.103026 CGACGCATTGGAGGATGAGA 59.897 55.000 0.00 0.00 32.15 3.27
692 706 1.863267 GACGCATTGGAGGATGAGAG 58.137 55.000 0.00 0.00 32.15 3.20
693 707 0.467384 ACGCATTGGAGGATGAGAGG 59.533 55.000 0.00 0.00 32.15 3.69
694 708 0.250209 CGCATTGGAGGATGAGAGGG 60.250 60.000 0.00 0.00 0.00 4.30
695 709 1.135094 GCATTGGAGGATGAGAGGGA 58.865 55.000 0.00 0.00 0.00 4.20
696 710 1.492176 GCATTGGAGGATGAGAGGGAA 59.508 52.381 0.00 0.00 0.00 3.97
697 711 2.092212 GCATTGGAGGATGAGAGGGAAA 60.092 50.000 0.00 0.00 0.00 3.13
698 712 3.625716 GCATTGGAGGATGAGAGGGAAAA 60.626 47.826 0.00 0.00 0.00 2.29
699 713 4.603131 CATTGGAGGATGAGAGGGAAAAA 58.397 43.478 0.00 0.00 0.00 1.94
715 729 1.966762 AAAAAGCAGCCGTGATGGG 59.033 52.632 0.00 0.00 38.63 4.00
723 737 4.820744 CCGTGATGGGCCAAGGGG 62.821 72.222 11.89 6.06 33.01 4.79
733 747 2.681064 CCAAGGGGCATGTGGTGG 60.681 66.667 0.00 0.00 0.00 4.61
734 748 2.681064 CAAGGGGCATGTGGTGGG 60.681 66.667 0.00 0.00 0.00 4.61
735 749 4.702274 AAGGGGCATGTGGTGGGC 62.702 66.667 0.00 0.00 0.00 5.36
741 755 3.716195 CATGTGGTGGGCCGAGGA 61.716 66.667 0.00 0.00 37.67 3.71
742 756 3.402681 ATGTGGTGGGCCGAGGAG 61.403 66.667 0.00 0.00 37.67 3.69
745 759 4.649705 TGGTGGGCCGAGGAGGAA 62.650 66.667 0.00 0.00 45.00 3.36
746 760 3.327404 GGTGGGCCGAGGAGGAAA 61.327 66.667 0.00 0.00 45.00 3.13
747 761 2.680370 GGTGGGCCGAGGAGGAAAT 61.680 63.158 0.00 0.00 45.00 2.17
748 762 1.153147 GTGGGCCGAGGAGGAAATC 60.153 63.158 0.00 0.00 45.00 2.17
760 774 3.363341 GAGGAAATCCAACAACGCAAA 57.637 42.857 1.67 0.00 38.89 3.68
761 775 3.049912 GAGGAAATCCAACAACGCAAAC 58.950 45.455 1.67 0.00 38.89 2.93
762 776 2.428890 AGGAAATCCAACAACGCAAACA 59.571 40.909 1.67 0.00 38.89 2.83
763 777 3.118956 AGGAAATCCAACAACGCAAACAA 60.119 39.130 1.67 0.00 38.89 2.83
764 778 3.807071 GGAAATCCAACAACGCAAACAAT 59.193 39.130 0.00 0.00 35.64 2.71
765 779 4.272261 GGAAATCCAACAACGCAAACAATT 59.728 37.500 0.00 0.00 35.64 2.32
766 780 5.463724 GGAAATCCAACAACGCAAACAATTA 59.536 36.000 0.00 0.00 35.64 1.40
767 781 6.018669 GGAAATCCAACAACGCAAACAATTAA 60.019 34.615 0.00 0.00 35.64 1.40
768 782 7.307692 GGAAATCCAACAACGCAAACAATTAAT 60.308 33.333 0.00 0.00 35.64 1.40
769 783 5.896922 TCCAACAACGCAAACAATTAATG 57.103 34.783 0.00 0.00 0.00 1.90
770 784 5.592054 TCCAACAACGCAAACAATTAATGA 58.408 33.333 0.00 0.00 0.00 2.57
771 785 6.042777 TCCAACAACGCAAACAATTAATGAA 58.957 32.000 0.00 0.00 0.00 2.57
772 786 6.703607 TCCAACAACGCAAACAATTAATGAAT 59.296 30.769 0.00 0.00 0.00 2.57
773 787 7.008859 CCAACAACGCAAACAATTAATGAATC 58.991 34.615 0.00 0.00 0.00 2.52
774 788 7.095691 CCAACAACGCAAACAATTAATGAATCT 60.096 33.333 0.00 0.00 0.00 2.40
775 789 7.337150 ACAACGCAAACAATTAATGAATCTG 57.663 32.000 0.00 0.00 0.00 2.90
776 790 6.922957 ACAACGCAAACAATTAATGAATCTGT 59.077 30.769 0.00 0.00 0.00 3.41
777 791 8.079203 ACAACGCAAACAATTAATGAATCTGTA 58.921 29.630 0.00 0.00 0.00 2.74
778 792 8.577939 CAACGCAAACAATTAATGAATCTGTAG 58.422 33.333 0.00 0.00 0.00 2.74
779 793 8.039603 ACGCAAACAATTAATGAATCTGTAGA 57.960 30.769 0.00 0.00 0.00 2.59
780 794 7.962918 ACGCAAACAATTAATGAATCTGTAGAC 59.037 33.333 0.00 0.00 0.00 2.59
781 795 7.429340 CGCAAACAATTAATGAATCTGTAGACC 59.571 37.037 0.00 0.00 0.00 3.85
782 796 8.462016 GCAAACAATTAATGAATCTGTAGACCT 58.538 33.333 0.00 0.00 0.00 3.85
783 797 9.778993 CAAACAATTAATGAATCTGTAGACCTG 57.221 33.333 0.00 0.00 0.00 4.00
784 798 9.520515 AAACAATTAATGAATCTGTAGACCTGT 57.479 29.630 0.00 0.00 0.00 4.00
785 799 9.520515 AACAATTAATGAATCTGTAGACCTGTT 57.479 29.630 0.00 0.00 0.00 3.16
786 800 9.520515 ACAATTAATGAATCTGTAGACCTGTTT 57.479 29.630 0.00 0.00 0.00 2.83
824 838 7.496529 TTTTGAAGTTGAATCTGTAGACCTG 57.503 36.000 0.00 0.00 0.00 4.00
825 839 5.808366 TGAAGTTGAATCTGTAGACCTGT 57.192 39.130 0.00 0.00 0.00 4.00
826 840 6.174720 TGAAGTTGAATCTGTAGACCTGTT 57.825 37.500 0.00 0.00 0.00 3.16
827 841 7.297936 TGAAGTTGAATCTGTAGACCTGTTA 57.702 36.000 0.00 0.00 0.00 2.41
828 842 7.378966 TGAAGTTGAATCTGTAGACCTGTTAG 58.621 38.462 0.00 0.00 0.00 2.34
829 843 5.725362 AGTTGAATCTGTAGACCTGTTAGC 58.275 41.667 0.00 0.00 0.00 3.09
830 844 4.737855 TGAATCTGTAGACCTGTTAGCC 57.262 45.455 0.00 0.00 0.00 3.93
831 845 4.093743 TGAATCTGTAGACCTGTTAGCCA 58.906 43.478 0.00 0.00 0.00 4.75
832 846 4.716784 TGAATCTGTAGACCTGTTAGCCAT 59.283 41.667 0.00 0.00 0.00 4.40
833 847 5.897250 TGAATCTGTAGACCTGTTAGCCATA 59.103 40.000 0.00 0.00 0.00 2.74
834 848 6.040955 TGAATCTGTAGACCTGTTAGCCATAG 59.959 42.308 0.00 0.00 0.00 2.23
835 849 5.125367 TCTGTAGACCTGTTAGCCATAGA 57.875 43.478 0.00 0.00 0.00 1.98
836 850 5.516044 TCTGTAGACCTGTTAGCCATAGAA 58.484 41.667 0.00 0.00 0.00 2.10
837 851 6.136857 TCTGTAGACCTGTTAGCCATAGAAT 58.863 40.000 0.00 0.00 0.00 2.40
838 852 6.265649 TCTGTAGACCTGTTAGCCATAGAATC 59.734 42.308 0.00 0.00 0.00 2.52
839 853 4.592485 AGACCTGTTAGCCATAGAATCG 57.408 45.455 0.00 0.00 0.00 3.34
840 854 3.060602 GACCTGTTAGCCATAGAATCGC 58.939 50.000 0.00 0.00 0.00 4.58
841 855 2.700897 ACCTGTTAGCCATAGAATCGCT 59.299 45.455 0.00 0.00 36.63 4.93
842 856 3.062763 CCTGTTAGCCATAGAATCGCTG 58.937 50.000 0.00 0.00 34.03 5.18
843 857 3.062763 CTGTTAGCCATAGAATCGCTGG 58.937 50.000 0.61 0.61 34.03 4.85
844 858 2.224281 TGTTAGCCATAGAATCGCTGGG 60.224 50.000 6.33 0.00 34.03 4.45
845 859 0.321671 TAGCCATAGAATCGCTGGGC 59.678 55.000 6.33 0.00 44.30 5.36
858 872 3.845259 TGGGCGATCCAGCGGTAC 61.845 66.667 0.00 0.00 41.46 3.34
859 873 4.944372 GGGCGATCCAGCGGTACG 62.944 72.222 0.00 0.00 46.33 3.67
879 893 4.643387 AGCGACCGGCCAAAGCTT 62.643 61.111 0.00 0.00 45.17 3.74
880 894 4.103103 GCGACCGGCCAAAGCTTC 62.103 66.667 0.00 0.00 39.73 3.86
881 895 3.431725 CGACCGGCCAAAGCTTCC 61.432 66.667 0.00 0.00 39.73 3.46
882 896 3.062466 GACCGGCCAAAGCTTCCC 61.062 66.667 0.00 0.00 39.73 3.97
883 897 3.860930 GACCGGCCAAAGCTTCCCA 62.861 63.158 0.00 0.00 39.73 4.37
884 898 2.600173 CCGGCCAAAGCTTCCCAA 60.600 61.111 2.24 0.00 39.73 4.12
885 899 2.206536 CCGGCCAAAGCTTCCCAAA 61.207 57.895 2.24 0.00 39.73 3.28
886 900 1.745264 CGGCCAAAGCTTCCCAAAA 59.255 52.632 2.24 0.00 39.73 2.44
887 901 0.105778 CGGCCAAAGCTTCCCAAAAA 59.894 50.000 2.24 0.00 39.73 1.94
909 923 2.861147 AACGAAGGAAGGAAGGAAGG 57.139 50.000 0.00 0.00 0.00 3.46
910 924 2.025636 ACGAAGGAAGGAAGGAAGGA 57.974 50.000 0.00 0.00 0.00 3.36
911 925 2.335933 ACGAAGGAAGGAAGGAAGGAA 58.664 47.619 0.00 0.00 0.00 3.36
912 926 2.303311 ACGAAGGAAGGAAGGAAGGAAG 59.697 50.000 0.00 0.00 0.00 3.46
913 927 2.355209 CGAAGGAAGGAAGGAAGGAAGG 60.355 54.545 0.00 0.00 0.00 3.46
914 928 2.743131 AGGAAGGAAGGAAGGAAGGA 57.257 50.000 0.00 0.00 0.00 3.36
915 929 2.270858 AGGAAGGAAGGAAGGAAGGAC 58.729 52.381 0.00 0.00 0.00 3.85
916 930 1.282447 GGAAGGAAGGAAGGAAGGACC 59.718 57.143 0.00 0.00 39.35 4.46
917 931 0.984995 AAGGAAGGAAGGAAGGACCG 59.015 55.000 0.00 0.00 44.74 4.79
918 932 0.910088 AGGAAGGAAGGAAGGACCGG 60.910 60.000 0.00 0.00 44.74 5.28
919 933 1.078356 GAAGGAAGGAAGGACCGGC 60.078 63.158 0.00 0.00 44.74 6.13
920 934 1.838073 GAAGGAAGGAAGGACCGGCA 61.838 60.000 0.00 0.00 44.74 5.69
921 935 2.046217 GGAAGGAAGGACCGGCAC 60.046 66.667 0.00 0.00 44.74 5.01
938 952 4.547367 CGAACCCTCGCCCCATCC 62.547 72.222 0.00 0.00 38.45 3.51
939 953 4.191015 GAACCCTCGCCCCATCCC 62.191 72.222 0.00 0.00 0.00 3.85
950 964 4.123545 CCATCCCCCGTTCCCCAC 62.124 72.222 0.00 0.00 0.00 4.61
987 1001 3.158648 CATCCCGCCGGAACCCTA 61.159 66.667 5.05 0.00 43.10 3.53
988 1002 2.842936 ATCCCGCCGGAACCCTAG 60.843 66.667 5.05 0.00 43.10 3.02
1009 1023 4.592192 CCGCCGCCATGACGATCT 62.592 66.667 1.83 0.00 34.06 2.75
1010 1024 3.032609 CGCCGCCATGACGATCTC 61.033 66.667 1.83 0.00 34.06 2.75
1011 1025 2.663188 GCCGCCATGACGATCTCC 60.663 66.667 1.83 0.00 34.06 3.71
1012 1026 2.355126 CCGCCATGACGATCTCCG 60.355 66.667 1.83 0.00 45.44 4.63
1013 1027 2.721859 CGCCATGACGATCTCCGA 59.278 61.111 0.00 0.00 41.76 4.55
1014 1028 1.371022 CGCCATGACGATCTCCGAG 60.371 63.158 0.00 0.00 41.76 4.63
1015 1029 1.663074 GCCATGACGATCTCCGAGC 60.663 63.158 0.00 0.00 41.76 5.03
1016 1030 2.037053 CCATGACGATCTCCGAGCT 58.963 57.895 0.00 0.00 41.76 4.09
1017 1031 0.039617 CCATGACGATCTCCGAGCTC 60.040 60.000 2.73 2.73 41.76 4.09
1018 1032 0.950836 CATGACGATCTCCGAGCTCT 59.049 55.000 12.85 0.00 41.76 4.09
1019 1033 1.069296 CATGACGATCTCCGAGCTCTC 60.069 57.143 12.85 0.65 41.76 3.20
1020 1034 0.179234 TGACGATCTCCGAGCTCTCT 59.821 55.000 12.85 0.00 41.76 3.10
1021 1035 0.586319 GACGATCTCCGAGCTCTCTG 59.414 60.000 12.85 0.03 41.76 3.35
1022 1036 0.179234 ACGATCTCCGAGCTCTCTGA 59.821 55.000 12.85 6.99 41.76 3.27
1023 1037 0.867746 CGATCTCCGAGCTCTCTGAG 59.132 60.000 12.85 14.17 40.76 3.35
1041 1055 2.490217 CTCAAGCGGGTCGTCGAT 59.510 61.111 0.00 0.00 0.00 3.59
1043 1057 1.994507 CTCAAGCGGGTCGTCGATCT 61.995 60.000 5.31 0.00 0.00 2.75
1145 1159 3.382832 CTCCCTCACCGACGCCTT 61.383 66.667 0.00 0.00 0.00 4.35
1146 1160 2.036098 TCCCTCACCGACGCCTTA 59.964 61.111 0.00 0.00 0.00 2.69
1147 1161 2.183555 CCCTCACCGACGCCTTAC 59.816 66.667 0.00 0.00 0.00 2.34
1148 1162 2.183555 CCTCACCGACGCCTTACC 59.816 66.667 0.00 0.00 0.00 2.85
1161 1175 2.403252 CCTTACCCAGGCTACAGTTG 57.597 55.000 0.00 0.00 35.13 3.16
1163 1177 2.835764 CCTTACCCAGGCTACAGTTGTA 59.164 50.000 0.00 0.00 35.13 2.41
1164 1178 3.369157 CCTTACCCAGGCTACAGTTGTAC 60.369 52.174 0.00 0.00 35.13 2.90
1167 1181 2.642807 ACCCAGGCTACAGTTGTACAAT 59.357 45.455 12.26 0.00 0.00 2.71
1172 1186 3.119101 AGGCTACAGTTGTACAATCTCGG 60.119 47.826 12.26 2.53 0.00 4.63
1175 1189 3.120321 ACAGTTGTACAATCTCGGCAA 57.880 42.857 12.26 0.00 0.00 4.52
1196 1210 3.068881 CCTCTGGAAAGCCGTGGA 58.931 61.111 0.00 0.00 36.79 4.02
1198 1212 1.371183 CTCTGGAAAGCCGTGGACA 59.629 57.895 0.00 0.00 36.79 4.02
1200 1214 0.250295 TCTGGAAAGCCGTGGACAAG 60.250 55.000 0.00 0.00 36.79 3.16
1431 1466 3.838271 GCCACGGAGGATGAGCGA 61.838 66.667 0.00 0.00 41.22 4.93
1432 1467 2.105128 CCACGGAGGATGAGCGAC 59.895 66.667 0.00 0.00 41.22 5.19
1433 1468 2.278206 CACGGAGGATGAGCGACG 60.278 66.667 0.00 0.00 0.00 5.12
1435 1470 4.193334 CGGAGGATGAGCGACGCA 62.193 66.667 23.70 1.68 0.00 5.24
1537 1572 4.452733 CCAAGTCCCTCGCGTCCC 62.453 72.222 5.77 0.00 0.00 4.46
1538 1573 3.382832 CAAGTCCCTCGCGTCCCT 61.383 66.667 5.77 0.00 0.00 4.20
1647 1682 2.954868 GCCGTCGTAGCGTCCATG 60.955 66.667 0.00 0.00 0.00 3.66
1651 1686 1.589196 GTCGTAGCGTCCATGCTCC 60.589 63.158 0.00 0.00 45.87 4.70
1675 1710 0.239879 CGAGGCGCTAGATCTCTTCC 59.760 60.000 7.64 0.00 0.00 3.46
1676 1711 1.323412 GAGGCGCTAGATCTCTTCCA 58.677 55.000 7.64 0.00 0.00 3.53
1677 1712 1.269448 GAGGCGCTAGATCTCTTCCAG 59.731 57.143 7.64 0.00 0.00 3.86
1678 1713 1.133637 AGGCGCTAGATCTCTTCCAGA 60.134 52.381 7.64 0.00 34.78 3.86
1679 1714 1.683917 GGCGCTAGATCTCTTCCAGAA 59.316 52.381 7.64 0.00 33.62 3.02
1680 1715 2.288152 GGCGCTAGATCTCTTCCAGAAG 60.288 54.545 7.64 0.73 39.71 2.85
1681 1716 2.862140 GCGCTAGATCTCTTCCAGAAGC 60.862 54.545 0.00 0.00 38.28 3.86
1682 1717 2.622942 CGCTAGATCTCTTCCAGAAGCT 59.377 50.000 0.00 0.00 38.28 3.74
1683 1718 3.550639 CGCTAGATCTCTTCCAGAAGCTG 60.551 52.174 0.00 0.00 38.28 4.24
1684 1719 2.985957 AGATCTCTTCCAGAAGCTGC 57.014 50.000 2.38 0.00 38.28 5.25
1685 1720 1.485895 AGATCTCTTCCAGAAGCTGCC 59.514 52.381 2.38 0.00 38.28 4.85
1686 1721 0.545646 ATCTCTTCCAGAAGCTGCCC 59.454 55.000 2.38 0.00 38.28 5.36
1687 1722 1.077858 CTCTTCCAGAAGCTGCCCC 60.078 63.158 2.38 0.00 38.28 5.80
1688 1723 2.437359 CTTCCAGAAGCTGCCCCG 60.437 66.667 0.00 0.00 0.00 5.73
1689 1724 4.722700 TTCCAGAAGCTGCCCCGC 62.723 66.667 0.00 0.00 0.00 6.13
1732 1767 4.748798 CACCCTCCCCCTCCAGCT 62.749 72.222 0.00 0.00 0.00 4.24
1775 1834 3.019003 GCTACCTTGCCCTCGAGCA 62.019 63.158 6.99 0.00 42.17 4.26
1780 1839 1.078918 CTTGCCCTCGAGCATCACA 60.079 57.895 6.99 0.00 43.64 3.58
1791 1850 1.888512 GAGCATCACAAAGCCAAGGAA 59.111 47.619 0.00 0.00 33.17 3.36
1796 1855 0.594796 CACAAAGCCAAGGAACACGC 60.595 55.000 0.00 0.00 0.00 5.34
1797 1856 0.751643 ACAAAGCCAAGGAACACGCT 60.752 50.000 0.00 0.00 0.00 5.07
1799 1858 0.465460 AAAGCCAAGGAACACGCTGA 60.465 50.000 0.00 0.00 0.00 4.26
1829 1888 1.801242 TTTATCCATGCCTCGAGGGA 58.199 50.000 32.06 30.59 40.76 4.20
1832 1891 1.143813 ATCCATGCCTCGAGGGATTT 58.856 50.000 33.42 19.18 44.30 2.17
1834 1893 2.123589 TCCATGCCTCGAGGGATTTAA 58.876 47.619 33.42 19.39 44.30 1.52
1836 1895 3.138283 TCCATGCCTCGAGGGATTTAATT 59.862 43.478 33.42 12.30 44.30 1.40
1840 1899 2.863809 CCTCGAGGGATTTAATTGGGG 58.136 52.381 24.62 0.00 37.23 4.96
1845 1904 2.177888 GAGGGATTTAATTGGGGAGGCT 59.822 50.000 0.00 0.00 0.00 4.58
2266 2325 9.332502 TCTCTTACACAAGTAATTTTACAGCAA 57.667 29.630 3.50 0.00 39.36 3.91
2568 2627 5.880332 TCTTGCCTATTGCTTCTTACGATTT 59.120 36.000 0.00 0.00 42.00 2.17
2786 2845 2.198827 TGCATTGACTTCAATCCCGT 57.801 45.000 1.28 0.00 44.10 5.28
3004 3063 1.136305 GTGCCAAGCTACGGATGTCTA 59.864 52.381 6.28 0.00 0.00 2.59
3102 3161 2.514726 ATATGGGTAGAAGGGTGGCT 57.485 50.000 0.00 0.00 0.00 4.75
3812 3871 2.353889 GCAAGAGTGATGCAGTGTATGG 59.646 50.000 0.00 0.00 43.29 2.74
3828 3887 5.302059 AGTGTATGGTGTATATCGACAAGCT 59.698 40.000 0.00 0.00 0.00 3.74
4010 4069 7.172875 GCATGTTGAGAGCATGAAGAAGTATAT 59.827 37.037 9.17 0.00 44.60 0.86
4109 4168 3.611766 AAACCCTGATGAAGGTAGTCG 57.388 47.619 0.00 0.00 45.78 4.18
4199 4262 2.500229 CTTCTAAACGGGGCAGTTCAA 58.500 47.619 0.00 0.00 32.43 2.69
4254 4317 4.189231 ACTTGAGTAATTGCGTATGACCC 58.811 43.478 0.00 0.00 0.00 4.46
4364 4428 4.142071 TGTGTAGGAGAGATGACTGATTGC 60.142 45.833 0.00 0.00 0.00 3.56
4377 4441 8.478066 AGATGACTGATTGCTTGTAATACAGTA 58.522 33.333 0.00 0.00 37.27 2.74
4378 4442 7.827819 TGACTGATTGCTTGTAATACAGTAC 57.172 36.000 0.00 0.00 37.27 2.73
4379 4443 7.611770 TGACTGATTGCTTGTAATACAGTACT 58.388 34.615 0.00 0.00 37.27 2.73
4380 4444 7.545615 TGACTGATTGCTTGTAATACAGTACTG 59.454 37.037 21.44 21.44 37.27 2.74
4381 4445 7.386851 ACTGATTGCTTGTAATACAGTACTGT 58.613 34.615 30.13 30.13 46.87 3.55
4473 4568 6.667414 ACTAATCTCCTGATGTCCCTATCATC 59.333 42.308 0.00 0.00 41.16 2.92
4647 4745 0.909133 GGTAGGGGTTTGGGGTCGTA 60.909 60.000 0.00 0.00 0.00 3.43
4916 5014 0.904649 TGATCCCAGACGTGCTCAAT 59.095 50.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 3.195698 GCCGCGATGGGAGTTGAC 61.196 66.667 8.23 0.00 38.63 3.18
120 121 3.726517 CGCCTCCACGCCTGTTTG 61.727 66.667 0.00 0.00 0.00 2.93
150 151 2.049063 GGATTCGATCCTCCGCCG 60.049 66.667 6.63 0.00 46.19 6.46
249 253 9.357652 TGAGAAACAATCAAGTCAAAAGAAAAG 57.642 29.630 0.00 0.00 0.00 2.27
250 254 9.357652 CTGAGAAACAATCAAGTCAAAAGAAAA 57.642 29.630 0.00 0.00 0.00 2.29
251 255 8.739039 TCTGAGAAACAATCAAGTCAAAAGAAA 58.261 29.630 0.00 0.00 0.00 2.52
252 256 8.279970 TCTGAGAAACAATCAAGTCAAAAGAA 57.720 30.769 0.00 0.00 0.00 2.52
253 257 7.864108 TCTGAGAAACAATCAAGTCAAAAGA 57.136 32.000 0.00 0.00 0.00 2.52
254 258 7.533222 CGATCTGAGAAACAATCAAGTCAAAAG 59.467 37.037 0.00 0.00 0.00 2.27
280 290 7.750014 GCTATTAAGTATTGCTAGTACGAGTCC 59.250 40.741 4.84 0.00 33.02 3.85
301 311 3.150767 TGGGCGTACAAACAAAGCTATT 58.849 40.909 0.00 0.00 0.00 1.73
531 545 2.523015 CCTTTTGCTGCAATCATCGTC 58.477 47.619 16.77 0.00 0.00 4.20
532 546 1.403249 GCCTTTTGCTGCAATCATCGT 60.403 47.619 16.77 0.00 36.87 3.73
533 547 1.274596 GCCTTTTGCTGCAATCATCG 58.725 50.000 16.77 3.78 36.87 3.84
544 558 0.110644 CGACGAAGACAGCCTTTTGC 60.111 55.000 0.00 0.00 41.71 3.68
545 559 1.217882 ACGACGAAGACAGCCTTTTG 58.782 50.000 0.00 0.00 34.68 2.44
546 560 1.597663 CAACGACGAAGACAGCCTTTT 59.402 47.619 0.00 0.00 34.68 2.27
547 561 1.217882 CAACGACGAAGACAGCCTTT 58.782 50.000 0.00 0.00 34.68 3.11
548 562 1.222115 GCAACGACGAAGACAGCCTT 61.222 55.000 0.00 0.00 37.93 4.35
549 563 1.664965 GCAACGACGAAGACAGCCT 60.665 57.895 0.00 0.00 0.00 4.58
550 564 1.891060 CTGCAACGACGAAGACAGCC 61.891 60.000 0.00 0.00 0.00 4.85
551 565 1.215655 ACTGCAACGACGAAGACAGC 61.216 55.000 0.00 0.00 0.00 4.40
552 566 0.778815 GACTGCAACGACGAAGACAG 59.221 55.000 0.00 6.14 0.00 3.51
553 567 0.933047 CGACTGCAACGACGAAGACA 60.933 55.000 0.00 0.00 0.00 3.41
554 568 0.933509 ACGACTGCAACGACGAAGAC 60.934 55.000 17.54 0.00 34.70 3.01
555 569 0.587768 TACGACTGCAACGACGAAGA 59.412 50.000 17.54 0.00 34.70 2.87
556 570 0.975544 CTACGACTGCAACGACGAAG 59.024 55.000 17.54 0.00 34.70 3.79
557 571 1.000233 GCTACGACTGCAACGACGAA 61.000 55.000 17.54 2.40 34.70 3.85
558 572 1.441515 GCTACGACTGCAACGACGA 60.442 57.895 17.54 4.19 34.70 4.20
559 573 1.396543 GAGCTACGACTGCAACGACG 61.397 60.000 17.54 7.93 34.70 5.12
560 574 1.071567 GGAGCTACGACTGCAACGAC 61.072 60.000 17.54 8.09 34.70 4.34
561 575 1.211969 GGAGCTACGACTGCAACGA 59.788 57.895 17.54 3.43 34.70 3.85
562 576 2.152699 CGGAGCTACGACTGCAACG 61.153 63.158 14.92 10.65 35.47 4.10
563 577 1.211969 TCGGAGCTACGACTGCAAC 59.788 57.895 19.35 0.00 38.06 4.17
564 578 3.676216 TCGGAGCTACGACTGCAA 58.324 55.556 19.35 0.00 38.06 4.08
570 584 1.134367 CCATTCAAGTCGGAGCTACGA 59.866 52.381 19.35 19.35 41.13 3.43
571 585 1.134367 TCCATTCAAGTCGGAGCTACG 59.866 52.381 13.63 13.63 0.00 3.51
572 586 2.961526 TCCATTCAAGTCGGAGCTAC 57.038 50.000 0.00 0.00 0.00 3.58
573 587 4.487714 AAATCCATTCAAGTCGGAGCTA 57.512 40.909 0.00 0.00 30.84 3.32
574 588 3.356529 AAATCCATTCAAGTCGGAGCT 57.643 42.857 0.00 0.00 30.84 4.09
575 589 3.002759 GCTAAATCCATTCAAGTCGGAGC 59.997 47.826 0.00 0.00 30.84 4.70
576 590 4.191544 TGCTAAATCCATTCAAGTCGGAG 58.808 43.478 0.00 0.00 30.84 4.63
577 591 4.214986 TGCTAAATCCATTCAAGTCGGA 57.785 40.909 0.00 0.00 0.00 4.55
578 592 4.963276 TTGCTAAATCCATTCAAGTCGG 57.037 40.909 0.00 0.00 0.00 4.79
609 623 2.125673 CCGGCGTACTGGAACCAG 60.126 66.667 17.94 17.94 46.41 4.00
610 624 3.697747 CCCGGCGTACTGGAACCA 61.698 66.667 6.01 0.00 46.41 3.67
611 625 3.384532 TCCCGGCGTACTGGAACC 61.385 66.667 6.01 0.00 46.41 3.62
612 626 2.125793 GTCCCGGCGTACTGGAAC 60.126 66.667 6.01 0.00 46.41 3.62
613 627 3.751246 CGTCCCGGCGTACTGGAA 61.751 66.667 6.01 0.00 46.41 3.53
623 637 2.742372 CTGAAACCAGCGTCCCGG 60.742 66.667 0.00 0.00 0.00 5.73
624 638 3.423154 GCTGAAACCAGCGTCCCG 61.423 66.667 1.44 0.00 46.25 5.14
631 645 2.180017 GCCGCATGCTGAAACCAG 59.820 61.111 17.13 0.00 36.87 4.00
632 646 3.372730 GGCCGCATGCTGAAACCA 61.373 61.111 17.13 0.00 40.92 3.67
667 681 2.885644 CTCCAATGCGTCGTCCGG 60.886 66.667 0.00 0.00 36.94 5.14
668 682 2.629050 ATCCTCCAATGCGTCGTCCG 62.629 60.000 0.00 0.00 40.40 4.79
669 683 1.144057 ATCCTCCAATGCGTCGTCC 59.856 57.895 0.00 0.00 0.00 4.79
670 684 0.179111 TCATCCTCCAATGCGTCGTC 60.179 55.000 0.00 0.00 0.00 4.20
671 685 0.179100 CTCATCCTCCAATGCGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
672 686 0.103026 TCTCATCCTCCAATGCGTCG 59.897 55.000 0.00 0.00 0.00 5.12
673 687 1.539929 CCTCTCATCCTCCAATGCGTC 60.540 57.143 0.00 0.00 0.00 5.19
674 688 0.467384 CCTCTCATCCTCCAATGCGT 59.533 55.000 0.00 0.00 0.00 5.24
675 689 0.250209 CCCTCTCATCCTCCAATGCG 60.250 60.000 0.00 0.00 0.00 4.73
676 690 1.135094 TCCCTCTCATCCTCCAATGC 58.865 55.000 0.00 0.00 0.00 3.56
677 691 3.939740 TTTCCCTCTCATCCTCCAATG 57.060 47.619 0.00 0.00 0.00 2.82
678 692 4.953781 TTTTTCCCTCTCATCCTCCAAT 57.046 40.909 0.00 0.00 0.00 3.16
697 711 1.966762 CCCATCACGGCTGCTTTTT 59.033 52.632 0.00 0.00 0.00 1.94
698 712 2.639327 GCCCATCACGGCTGCTTTT 61.639 57.895 0.00 0.00 46.10 2.27
699 713 3.064324 GCCCATCACGGCTGCTTT 61.064 61.111 0.00 0.00 46.10 3.51
706 720 4.820744 CCCCTTGGCCCATCACGG 62.821 72.222 0.00 0.00 0.00 4.94
716 730 2.681064 CCACCACATGCCCCTTGG 60.681 66.667 0.00 0.00 36.39 3.61
717 731 2.681064 CCCACCACATGCCCCTTG 60.681 66.667 0.00 0.00 0.00 3.61
718 732 4.702274 GCCCACCACATGCCCCTT 62.702 66.667 0.00 0.00 0.00 3.95
724 738 3.687321 CTCCTCGGCCCACCACATG 62.687 68.421 0.00 0.00 34.57 3.21
725 739 3.402681 CTCCTCGGCCCACCACAT 61.403 66.667 0.00 0.00 34.57 3.21
728 742 4.649705 TTCCTCCTCGGCCCACCA 62.650 66.667 0.00 0.00 34.57 4.17
729 743 2.610532 GATTTCCTCCTCGGCCCACC 62.611 65.000 0.00 0.00 0.00 4.61
730 744 1.153147 GATTTCCTCCTCGGCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
731 745 2.375345 GGATTTCCTCCTCGGCCCA 61.375 63.158 0.00 0.00 41.29 5.36
732 746 1.921869 TTGGATTTCCTCCTCGGCCC 61.922 60.000 0.00 0.00 45.21 5.80
733 747 0.748367 GTTGGATTTCCTCCTCGGCC 60.748 60.000 0.00 0.00 45.21 6.13
734 748 0.035439 TGTTGGATTTCCTCCTCGGC 60.035 55.000 0.00 0.00 45.21 5.54
735 749 2.084546 GTTGTTGGATTTCCTCCTCGG 58.915 52.381 0.00 0.00 45.21 4.63
736 750 1.732259 CGTTGTTGGATTTCCTCCTCG 59.268 52.381 0.00 0.00 45.21 4.63
737 751 1.468914 GCGTTGTTGGATTTCCTCCTC 59.531 52.381 0.00 0.00 45.21 3.71
738 752 1.202879 TGCGTTGTTGGATTTCCTCCT 60.203 47.619 0.00 0.00 45.21 3.69
739 753 1.243902 TGCGTTGTTGGATTTCCTCC 58.756 50.000 0.00 0.00 45.19 4.30
740 754 3.049912 GTTTGCGTTGTTGGATTTCCTC 58.950 45.455 0.00 0.00 36.82 3.71
741 755 2.428890 TGTTTGCGTTGTTGGATTTCCT 59.571 40.909 0.00 0.00 36.82 3.36
742 756 2.815478 TGTTTGCGTTGTTGGATTTCC 58.185 42.857 0.00 0.00 0.00 3.13
743 757 5.402464 AATTGTTTGCGTTGTTGGATTTC 57.598 34.783 0.00 0.00 0.00 2.17
744 758 6.910536 TTAATTGTTTGCGTTGTTGGATTT 57.089 29.167 0.00 0.00 0.00 2.17
745 759 6.703607 TCATTAATTGTTTGCGTTGTTGGATT 59.296 30.769 0.00 0.00 0.00 3.01
746 760 6.219473 TCATTAATTGTTTGCGTTGTTGGAT 58.781 32.000 0.00 0.00 0.00 3.41
747 761 5.592054 TCATTAATTGTTTGCGTTGTTGGA 58.408 33.333 0.00 0.00 0.00 3.53
748 762 5.896922 TCATTAATTGTTTGCGTTGTTGG 57.103 34.783 0.00 0.00 0.00 3.77
749 763 7.736880 CAGATTCATTAATTGTTTGCGTTGTTG 59.263 33.333 0.00 0.00 0.00 3.33
750 764 7.437862 ACAGATTCATTAATTGTTTGCGTTGTT 59.562 29.630 0.00 0.00 0.00 2.83
751 765 6.922957 ACAGATTCATTAATTGTTTGCGTTGT 59.077 30.769 0.00 0.00 0.00 3.32
752 766 7.337150 ACAGATTCATTAATTGTTTGCGTTG 57.663 32.000 0.00 0.00 0.00 4.10
753 767 8.511321 TCTACAGATTCATTAATTGTTTGCGTT 58.489 29.630 0.00 0.00 0.00 4.84
754 768 7.962918 GTCTACAGATTCATTAATTGTTTGCGT 59.037 33.333 0.00 0.00 0.00 5.24
755 769 7.429340 GGTCTACAGATTCATTAATTGTTTGCG 59.571 37.037 0.00 0.00 0.00 4.85
756 770 8.462016 AGGTCTACAGATTCATTAATTGTTTGC 58.538 33.333 0.00 0.00 0.00 3.68
757 771 9.778993 CAGGTCTACAGATTCATTAATTGTTTG 57.221 33.333 0.00 0.00 0.00 2.93
758 772 9.520515 ACAGGTCTACAGATTCATTAATTGTTT 57.479 29.630 0.00 0.00 0.00 2.83
759 773 9.520515 AACAGGTCTACAGATTCATTAATTGTT 57.479 29.630 0.00 0.00 0.00 2.83
760 774 9.520515 AAACAGGTCTACAGATTCATTAATTGT 57.479 29.630 0.00 0.00 0.00 2.71
799 813 7.556275 ACAGGTCTACAGATTCAACTTCAAAAA 59.444 33.333 0.00 0.00 0.00 1.94
800 814 7.054124 ACAGGTCTACAGATTCAACTTCAAAA 58.946 34.615 0.00 0.00 0.00 2.44
801 815 6.591935 ACAGGTCTACAGATTCAACTTCAAA 58.408 36.000 0.00 0.00 0.00 2.69
802 816 6.174720 ACAGGTCTACAGATTCAACTTCAA 57.825 37.500 0.00 0.00 0.00 2.69
803 817 5.808366 ACAGGTCTACAGATTCAACTTCA 57.192 39.130 0.00 0.00 0.00 3.02
804 818 6.311690 GCTAACAGGTCTACAGATTCAACTTC 59.688 42.308 0.00 0.00 0.00 3.01
805 819 6.166982 GCTAACAGGTCTACAGATTCAACTT 58.833 40.000 0.00 0.00 0.00 2.66
806 820 5.337652 GGCTAACAGGTCTACAGATTCAACT 60.338 44.000 0.00 0.00 0.00 3.16
807 821 4.870991 GGCTAACAGGTCTACAGATTCAAC 59.129 45.833 0.00 0.00 0.00 3.18
808 822 4.530553 TGGCTAACAGGTCTACAGATTCAA 59.469 41.667 0.00 0.00 0.00 2.69
809 823 4.093743 TGGCTAACAGGTCTACAGATTCA 58.906 43.478 0.00 0.00 0.00 2.57
810 824 4.737855 TGGCTAACAGGTCTACAGATTC 57.262 45.455 0.00 0.00 0.00 2.52
811 825 6.136857 TCTATGGCTAACAGGTCTACAGATT 58.863 40.000 0.00 0.00 0.00 2.40
812 826 5.706447 TCTATGGCTAACAGGTCTACAGAT 58.294 41.667 0.00 0.00 0.00 2.90
813 827 5.125367 TCTATGGCTAACAGGTCTACAGA 57.875 43.478 0.00 0.00 0.00 3.41
814 828 5.854010 TTCTATGGCTAACAGGTCTACAG 57.146 43.478 0.00 0.00 0.00 2.74
815 829 5.009710 CGATTCTATGGCTAACAGGTCTACA 59.990 44.000 0.00 0.00 0.00 2.74
816 830 5.462405 CGATTCTATGGCTAACAGGTCTAC 58.538 45.833 0.00 0.00 0.00 2.59
817 831 4.022242 GCGATTCTATGGCTAACAGGTCTA 60.022 45.833 0.00 0.00 0.00 2.59
818 832 3.243907 GCGATTCTATGGCTAACAGGTCT 60.244 47.826 0.00 0.00 0.00 3.85
819 833 3.060602 GCGATTCTATGGCTAACAGGTC 58.939 50.000 0.00 0.00 0.00 3.85
820 834 2.700897 AGCGATTCTATGGCTAACAGGT 59.299 45.455 0.00 0.00 42.76 4.00
821 835 3.062763 CAGCGATTCTATGGCTAACAGG 58.937 50.000 0.00 0.00 42.70 4.00
822 836 3.062763 CCAGCGATTCTATGGCTAACAG 58.937 50.000 0.00 0.00 42.70 3.16
823 837 2.224281 CCCAGCGATTCTATGGCTAACA 60.224 50.000 0.00 0.00 42.70 2.41
824 838 2.417719 CCCAGCGATTCTATGGCTAAC 58.582 52.381 0.00 0.00 42.70 2.34
825 839 1.270839 GCCCAGCGATTCTATGGCTAA 60.271 52.381 0.00 0.00 42.70 3.09
826 840 0.321671 GCCCAGCGATTCTATGGCTA 59.678 55.000 0.00 0.00 42.70 3.93
827 841 1.072159 GCCCAGCGATTCTATGGCT 59.928 57.895 0.00 0.00 45.60 4.75
828 842 3.660621 GCCCAGCGATTCTATGGC 58.339 61.111 0.00 0.00 35.56 4.40
841 855 3.845259 GTACCGCTGGATCGCCCA 61.845 66.667 1.50 0.00 44.25 5.36
842 856 4.944372 CGTACCGCTGGATCGCCC 62.944 72.222 1.50 0.00 0.00 6.13
862 876 4.643387 AAGCTTTGGCCGGTCGCT 62.643 61.111 0.00 0.09 39.73 4.93
863 877 4.103103 GAAGCTTTGGCCGGTCGC 62.103 66.667 0.00 0.00 39.73 5.19
864 878 3.431725 GGAAGCTTTGGCCGGTCG 61.432 66.667 0.00 0.00 39.73 4.79
865 879 3.062466 GGGAAGCTTTGGCCGGTC 61.062 66.667 0.00 0.00 39.73 4.79
866 880 2.937959 TTTGGGAAGCTTTGGCCGGT 62.938 55.000 1.90 0.00 39.73 5.28
867 881 1.753368 TTTTGGGAAGCTTTGGCCGG 61.753 55.000 0.00 0.00 39.73 6.13
868 882 0.105778 TTTTTGGGAAGCTTTGGCCG 59.894 50.000 0.00 0.00 39.73 6.13
887 901 3.889538 CCTTCCTTCCTTCCTTCGTTTTT 59.110 43.478 0.00 0.00 0.00 1.94
888 902 3.137728 TCCTTCCTTCCTTCCTTCGTTTT 59.862 43.478 0.00 0.00 0.00 2.43
889 903 2.709397 TCCTTCCTTCCTTCCTTCGTTT 59.291 45.455 0.00 0.00 0.00 3.60
890 904 2.335933 TCCTTCCTTCCTTCCTTCGTT 58.664 47.619 0.00 0.00 0.00 3.85
891 905 2.025636 TCCTTCCTTCCTTCCTTCGT 57.974 50.000 0.00 0.00 0.00 3.85
892 906 2.355209 CCTTCCTTCCTTCCTTCCTTCG 60.355 54.545 0.00 0.00 0.00 3.79
893 907 2.913617 TCCTTCCTTCCTTCCTTCCTTC 59.086 50.000 0.00 0.00 0.00 3.46
894 908 2.645297 GTCCTTCCTTCCTTCCTTCCTT 59.355 50.000 0.00 0.00 0.00 3.36
895 909 2.270858 GTCCTTCCTTCCTTCCTTCCT 58.729 52.381 0.00 0.00 0.00 3.36
896 910 1.282447 GGTCCTTCCTTCCTTCCTTCC 59.718 57.143 0.00 0.00 0.00 3.46
897 911 1.066071 CGGTCCTTCCTTCCTTCCTTC 60.066 57.143 0.00 0.00 0.00 3.46
898 912 0.984995 CGGTCCTTCCTTCCTTCCTT 59.015 55.000 0.00 0.00 0.00 3.36
899 913 0.910088 CCGGTCCTTCCTTCCTTCCT 60.910 60.000 0.00 0.00 0.00 3.36
900 914 1.602771 CCGGTCCTTCCTTCCTTCC 59.397 63.158 0.00 0.00 0.00 3.46
901 915 1.078356 GCCGGTCCTTCCTTCCTTC 60.078 63.158 1.90 0.00 0.00 3.46
902 916 1.846124 TGCCGGTCCTTCCTTCCTT 60.846 57.895 1.90 0.00 0.00 3.36
903 917 2.203938 TGCCGGTCCTTCCTTCCT 60.204 61.111 1.90 0.00 0.00 3.36
904 918 2.046217 GTGCCGGTCCTTCCTTCC 60.046 66.667 1.90 0.00 0.00 3.46
905 919 2.434359 CGTGCCGGTCCTTCCTTC 60.434 66.667 1.90 0.00 0.00 3.46
906 920 2.513259 TTCGTGCCGGTCCTTCCTT 61.513 57.895 1.90 0.00 0.00 3.36
907 921 2.920912 TTCGTGCCGGTCCTTCCT 60.921 61.111 1.90 0.00 0.00 3.36
908 922 2.741211 GTTCGTGCCGGTCCTTCC 60.741 66.667 1.90 0.00 0.00 3.46
909 923 2.741211 GGTTCGTGCCGGTCCTTC 60.741 66.667 1.90 0.00 0.00 3.46
910 924 4.324991 GGGTTCGTGCCGGTCCTT 62.325 66.667 1.90 0.00 0.00 3.36
912 926 4.754667 GAGGGTTCGTGCCGGTCC 62.755 72.222 1.90 0.00 0.00 4.46
922 936 4.191015 GGGATGGGGCGAGGGTTC 62.191 72.222 0.00 0.00 0.00 3.62
933 947 4.123545 GTGGGGAACGGGGGATGG 62.124 72.222 0.00 0.00 0.00 3.51
970 984 3.158648 TAGGGTTCCGGCGGGATG 61.159 66.667 27.98 0.00 43.41 3.51
971 985 2.842936 CTAGGGTTCCGGCGGGAT 60.843 66.667 27.98 4.78 43.41 3.85
992 1006 4.592192 AGATCGTCATGGCGGCGG 62.592 66.667 21.18 0.00 0.00 6.13
993 1007 3.032609 GAGATCGTCATGGCGGCG 61.033 66.667 21.18 0.51 0.00 6.46
994 1008 2.663188 GGAGATCGTCATGGCGGC 60.663 66.667 21.18 12.49 0.00 6.53
995 1009 2.355126 CGGAGATCGTCATGGCGG 60.355 66.667 21.18 0.86 0.00 6.13
996 1010 1.371022 CTCGGAGATCGTCATGGCG 60.371 63.158 14.91 14.91 40.32 5.69
997 1011 1.663074 GCTCGGAGATCGTCATGGC 60.663 63.158 9.69 0.00 40.32 4.40
998 1012 0.039617 GAGCTCGGAGATCGTCATGG 60.040 60.000 9.69 0.00 40.32 3.66
999 1013 0.950836 AGAGCTCGGAGATCGTCATG 59.049 55.000 16.74 0.00 35.43 3.07
1000 1014 1.202758 AGAGAGCTCGGAGATCGTCAT 60.203 52.381 16.74 0.01 35.43 3.06
1001 1015 0.179234 AGAGAGCTCGGAGATCGTCA 59.821 55.000 16.74 0.00 35.43 4.35
1002 1016 0.586319 CAGAGAGCTCGGAGATCGTC 59.414 60.000 16.74 14.00 35.43 4.20
1003 1017 0.179234 TCAGAGAGCTCGGAGATCGT 59.821 55.000 16.74 6.50 35.43 3.73
1004 1018 2.999356 TCAGAGAGCTCGGAGATCG 58.001 57.895 16.74 4.19 35.43 3.69
1015 1029 1.141449 CCCGCTTGAGCTCAGAGAG 59.859 63.158 17.43 17.02 39.32 3.20
1016 1030 1.599606 GACCCGCTTGAGCTCAGAGA 61.600 60.000 17.43 0.89 39.32 3.10
1017 1031 1.153667 GACCCGCTTGAGCTCAGAG 60.154 63.158 17.43 17.05 39.32 3.35
1018 1032 2.973899 GACCCGCTTGAGCTCAGA 59.026 61.111 17.43 7.42 39.32 3.27
1019 1033 2.507992 CGACCCGCTTGAGCTCAG 60.508 66.667 17.43 12.15 39.32 3.35
1020 1034 3.282745 GACGACCCGCTTGAGCTCA 62.283 63.158 13.74 13.74 39.32 4.26
1021 1035 2.507324 GACGACCCGCTTGAGCTC 60.507 66.667 6.82 6.82 39.32 4.09
1022 1036 4.421479 CGACGACCCGCTTGAGCT 62.421 66.667 1.07 0.00 39.32 4.09
1023 1037 3.701604 ATCGACGACCCGCTTGAGC 62.702 63.158 0.00 0.00 37.78 4.26
1024 1038 1.586564 GATCGACGACCCGCTTGAG 60.587 63.158 0.00 0.00 0.00 3.02
1025 1039 2.044555 AGATCGACGACCCGCTTGA 61.045 57.895 0.00 0.00 0.00 3.02
1026 1040 1.874019 CAGATCGACGACCCGCTTG 60.874 63.158 0.00 0.00 0.00 4.01
1027 1041 1.028330 TACAGATCGACGACCCGCTT 61.028 55.000 0.00 0.00 0.00 4.68
1028 1042 1.450848 TACAGATCGACGACCCGCT 60.451 57.895 0.00 0.00 0.00 5.52
1029 1043 1.298190 GTACAGATCGACGACCCGC 60.298 63.158 0.00 0.00 0.00 6.13
1030 1044 1.011463 CGTACAGATCGACGACCCG 60.011 63.158 0.00 0.00 41.60 5.28
1031 1045 2.387309 TCGTACAGATCGACGACCC 58.613 57.895 14.08 0.00 42.80 4.46
1041 1055 4.720902 TCGGGGGCGTCGTACAGA 62.721 66.667 0.00 0.00 0.00 3.41
1101 1115 2.266055 GAGCCGAGGTTGGTGAGG 59.734 66.667 0.00 0.00 0.00 3.86
1128 1142 2.050350 TAAGGCGTCGGTGAGGGAG 61.050 63.158 0.00 0.00 0.00 4.30
1145 1159 2.892118 TGTACAACTGTAGCCTGGGTA 58.108 47.619 0.51 0.51 0.00 3.69
1146 1160 1.724545 TGTACAACTGTAGCCTGGGT 58.275 50.000 2.98 2.98 0.00 4.51
1147 1161 2.851263 TTGTACAACTGTAGCCTGGG 57.149 50.000 3.59 0.00 0.00 4.45
1148 1162 4.184629 GAGATTGTACAACTGTAGCCTGG 58.815 47.826 11.22 0.00 0.00 4.45
1155 1169 2.806244 GTTGCCGAGATTGTACAACTGT 59.194 45.455 11.22 0.00 38.04 3.55
1172 1186 2.982744 GCTTTCCAGAGGCGGTTGC 61.983 63.158 0.00 0.00 41.71 4.17
1314 1349 2.501610 GCGCGGAGGAAGAAGGAT 59.498 61.111 8.83 0.00 0.00 3.24
1410 1445 3.781770 CTCATCCTCCGTGGCGAGC 62.782 68.421 0.00 0.00 35.26 5.03
1412 1447 3.838271 GCTCATCCTCCGTGGCGA 61.838 66.667 0.00 0.00 35.26 5.54
1435 1470 2.586792 GTTGAGGCCGAGCAGGAT 59.413 61.111 0.00 0.00 45.00 3.24
1547 1582 1.594293 CTGGTATACTTGCGGGGCG 60.594 63.158 2.25 0.00 0.00 6.13
1549 1584 1.002087 GGATCTGGTATACTTGCGGGG 59.998 57.143 2.25 0.00 0.00 5.73
1550 1585 1.002087 GGGATCTGGTATACTTGCGGG 59.998 57.143 2.25 0.00 0.00 6.13
1551 1586 1.971357 AGGGATCTGGTATACTTGCGG 59.029 52.381 2.25 0.00 0.00 5.69
1552 1587 2.351835 CGAGGGATCTGGTATACTTGCG 60.352 54.545 2.25 0.00 0.00 4.85
1553 1588 2.610727 GCGAGGGATCTGGTATACTTGC 60.611 54.545 2.25 0.00 0.00 4.01
1554 1589 2.028930 GGCGAGGGATCTGGTATACTTG 60.029 54.545 2.25 0.00 0.00 3.16
1555 1590 2.249139 GGCGAGGGATCTGGTATACTT 58.751 52.381 2.25 0.00 0.00 2.24
1556 1591 1.887088 CGGCGAGGGATCTGGTATACT 60.887 57.143 0.00 0.00 0.00 2.12
1557 1592 0.526662 CGGCGAGGGATCTGGTATAC 59.473 60.000 0.00 0.00 0.00 1.47
1558 1593 0.402887 TCGGCGAGGGATCTGGTATA 59.597 55.000 4.99 0.00 0.00 1.47
1559 1594 0.896019 CTCGGCGAGGGATCTGGTAT 60.896 60.000 28.52 0.00 0.00 2.73
1560 1595 1.528542 CTCGGCGAGGGATCTGGTA 60.529 63.158 28.52 0.00 0.00 3.25
1581 1616 1.061570 CTCGCCGACGTACAGGTAC 59.938 63.158 0.00 0.00 41.18 3.34
1637 1672 1.676678 GGTGAGGAGCATGGACGCTA 61.677 60.000 0.00 0.00 44.01 4.26
1651 1686 1.169661 AGATCTAGCGCCTCGGTGAG 61.170 60.000 2.29 0.00 38.30 3.51
1699 1734 1.332195 GGTGAGGCCAGCTTCTTTTT 58.668 50.000 5.01 0.00 37.77 1.94
1700 1735 0.540597 GGGTGAGGCCAGCTTCTTTT 60.541 55.000 5.01 0.00 40.45 2.27
1701 1736 1.075659 GGGTGAGGCCAGCTTCTTT 59.924 57.895 5.01 0.00 40.45 2.52
1702 1737 1.846712 GAGGGTGAGGCCAGCTTCTT 61.847 60.000 5.01 0.00 41.74 2.52
1716 1751 4.423209 GAGCTGGAGGGGGAGGGT 62.423 72.222 0.00 0.00 0.00 4.34
1732 1767 0.391130 CATCGACCCTTTTGCTCCGA 60.391 55.000 0.00 0.00 0.00 4.55
1775 1834 1.608590 CGTGTTCCTTGGCTTTGTGAT 59.391 47.619 0.00 0.00 0.00 3.06
1780 1839 0.465460 TCAGCGTGTTCCTTGGCTTT 60.465 50.000 0.00 0.00 32.46 3.51
1808 1867 2.507886 TCCCTCGAGGCATGGATAAAAA 59.492 45.455 26.87 0.00 34.51 1.94
1811 1870 2.030027 ATCCCTCGAGGCATGGATAA 57.970 50.000 26.87 3.46 35.86 1.75
1813 1872 1.143813 AAATCCCTCGAGGCATGGAT 58.856 50.000 26.87 19.22 39.26 3.41
1818 1877 2.422803 CCCAATTAAATCCCTCGAGGCA 60.423 50.000 26.87 13.04 34.51 4.75
1820 1879 2.441750 TCCCCAATTAAATCCCTCGAGG 59.558 50.000 25.36 25.36 0.00 4.63
1829 1888 4.477249 CTCATCAGCCTCCCCAATTAAAT 58.523 43.478 0.00 0.00 0.00 1.40
1832 1891 1.143684 GCTCATCAGCCTCCCCAATTA 59.856 52.381 0.00 0.00 40.14 1.40
1834 1893 1.284111 TGCTCATCAGCCTCCCCAAT 61.284 55.000 0.00 0.00 46.26 3.16
1836 1895 2.285592 TGCTCATCAGCCTCCCCA 60.286 61.111 0.00 0.00 46.26 4.96
1845 1904 1.153309 CATGCTCGGGTGCTCATCA 60.153 57.895 0.00 0.00 0.00 3.07
2568 2627 5.643348 CACCTACAGATACACATTTTGAGCA 59.357 40.000 0.00 0.00 0.00 4.26
2786 2845 4.350368 TGAGTTGTGAGCATTAGGAACA 57.650 40.909 0.00 0.00 0.00 3.18
2970 3029 1.812235 TGGCACGTCTCGAGTACTTA 58.188 50.000 13.13 0.00 0.00 2.24
3004 3063 2.597510 GCCTTCCACGCCAAGGTT 60.598 61.111 8.88 0.00 42.35 3.50
3102 3161 7.495934 GCACTAAGATCATACTTTTGCTCCTTA 59.504 37.037 0.00 0.00 36.08 2.69
3812 3871 5.828747 TCTGGTAAGCTTGTCGATATACAC 58.171 41.667 9.86 0.00 0.00 2.90
4010 4069 1.671979 GCATTGCTCCATGTCTGCTA 58.328 50.000 0.16 0.00 0.00 3.49
4102 4161 2.732619 CCCCCTCTTGCCGACTACC 61.733 68.421 0.00 0.00 0.00 3.18
4109 4168 4.299796 TTGGTGCCCCCTCTTGCC 62.300 66.667 0.00 0.00 0.00 4.52
4240 4303 2.102070 TTGACGGGTCATACGCAATT 57.898 45.000 1.83 0.00 39.64 2.32
4241 4304 2.102070 TTTGACGGGTCATACGCAAT 57.898 45.000 1.83 0.00 39.64 3.56
4254 4317 9.855361 GAGATGTAAATCAGACAATATTTGACG 57.145 33.333 0.00 0.00 0.00 4.35
4284 4347 3.189080 TCGACAAAGAATCCACATGCTTG 59.811 43.478 0.00 0.00 26.81 4.01
4377 4441 5.393866 AGGTTCCCAAATCAATGTTACAGT 58.606 37.500 0.00 0.00 0.00 3.55
4378 4442 5.982890 AGGTTCCCAAATCAATGTTACAG 57.017 39.130 0.00 0.00 0.00 2.74
4379 4443 6.432783 CAGTAGGTTCCCAAATCAATGTTACA 59.567 38.462 0.00 0.00 0.00 2.41
4380 4444 6.127730 CCAGTAGGTTCCCAAATCAATGTTAC 60.128 42.308 0.00 0.00 0.00 2.50
4381 4445 5.949354 CCAGTAGGTTCCCAAATCAATGTTA 59.051 40.000 0.00 0.00 0.00 2.41
4473 4568 8.801882 TCCAGTTTTCCACTATAATAGTTTGG 57.198 34.615 0.00 0.00 36.76 3.28
4619 4716 1.078115 AAACCCCTACCCAAACGGAT 58.922 50.000 0.00 0.00 34.64 4.18
4647 4745 2.621672 ATACCAGGACAGGCCCGGAT 62.622 60.000 0.00 0.00 37.37 4.18
5099 5197 1.677217 GGGAGGTGATGACTGCTTGTC 60.677 57.143 3.95 3.95 45.54 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.