Multiple sequence alignment - TraesCS5B01G254900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G254900 chr5B 100.000 5608 0 0 1 5608 437565657 437571264 0.000000e+00 10357.0
1 TraesCS5B01G254900 chr5B 93.225 679 39 3 4350 5025 437594327 437595001 0.000000e+00 992.0
2 TraesCS5B01G254900 chr5B 90.583 669 49 5 4350 5010 437610256 437610918 0.000000e+00 874.0
3 TraesCS5B01G254900 chr5B 94.627 335 13 5 5097 5429 437595000 437595331 1.080000e-141 514.0
4 TraesCS5B01G254900 chr5B 88.095 168 17 3 1356 1521 436552915 436553081 4.430000e-46 196.0
5 TraesCS5B01G254900 chr5B 80.556 252 35 9 5171 5419 437611569 437611809 1.240000e-41 182.0
6 TraesCS5B01G254900 chr5B 88.971 136 15 0 1366 1501 437250672 437250807 9.660000e-38 169.0
7 TraesCS5B01G254900 chr5B 77.211 294 59 8 2512 2802 436464709 436464997 1.250000e-36 165.0
8 TraesCS5B01G254900 chr5B 77.606 259 53 5 3644 3900 436617572 436617827 9.730000e-33 152.0
9 TraesCS5B01G254900 chr5B 84.783 138 21 0 1366 1503 437186805 437186942 7.580000e-29 139.0
10 TraesCS5B01G254900 chr5B 78.218 202 33 8 2826 3020 483524073 483523876 9.870000e-23 119.0
11 TraesCS5B01G254900 chr5B 77.376 221 35 7 2826 3033 109413846 109414064 3.550000e-22 117.0
12 TraesCS5B01G254900 chr5B 93.506 77 5 0 5023 5099 702514417 702514341 1.280000e-21 115.0
13 TraesCS5B01G254900 chr5D 93.278 3957 201 27 1096 5025 369071043 369074961 0.000000e+00 5773.0
14 TraesCS5B01G254900 chr5D 82.012 656 56 22 600 1253 369070476 369071071 8.390000e-138 501.0
15 TraesCS5B01G254900 chr5D 94.359 195 7 3 5097 5290 369074960 369075151 4.250000e-76 296.0
16 TraesCS5B01G254900 chr5D 88.312 154 17 1 1355 1508 368827262 368827414 3.450000e-42 183.0
17 TraesCS5B01G254900 chr5D 78.378 259 51 5 3644 3900 368825692 368825947 4.500000e-36 163.0
18 TraesCS5B01G254900 chr5D 92.793 111 8 0 19 129 369069224 369069334 1.620000e-35 161.0
19 TraesCS5B01G254900 chr5D 87.970 133 16 0 1366 1498 369034474 369034606 2.090000e-34 158.0
20 TraesCS5B01G254900 chr5D 96.667 90 3 0 5340 5429 369075549 369075638 3.500000e-32 150.0
21 TraesCS5B01G254900 chr5D 93.478 92 3 3 4269 4360 369074136 369074224 3.520000e-27 134.0
22 TraesCS5B01G254900 chr5D 85.039 127 19 0 1377 1503 368988984 368989110 4.560000e-26 130.0
23 TraesCS5B01G254900 chr5D 90.110 91 6 3 4197 4284 369074208 369074298 1.280000e-21 115.0
24 TraesCS5B01G254900 chr5D 85.294 102 10 4 4999 5099 132417990 132417893 3.570000e-17 100.0
25 TraesCS5B01G254900 chr5A 92.193 3945 205 39 1096 5004 471472095 471475972 0.000000e+00 5483.0
26 TraesCS5B01G254900 chr5A 84.099 849 82 23 456 1289 471471349 471472159 0.000000e+00 771.0
27 TraesCS5B01G254900 chr5A 93.478 92 3 3 4269 4360 471475161 471475249 3.520000e-27 134.0
28 TraesCS5B01G254900 chr5A 78.774 212 28 9 2836 3033 581928767 581928975 5.900000e-25 126.0
29 TraesCS5B01G254900 chr5A 78.607 201 28 11 2826 3017 572367012 572366818 9.870000e-23 119.0
30 TraesCS5B01G254900 chr5A 87.234 94 6 4 4197 4284 471475233 471475326 9.940000e-18 102.0
31 TraesCS5B01G254900 chr7B 96.203 79 3 0 5020 5098 57588661 57588583 4.560000e-26 130.0
32 TraesCS5B01G254900 chr2D 96.154 78 3 0 5021 5098 586574588 586574665 1.640000e-25 128.0
33 TraesCS5B01G254900 chr2D 90.566 53 3 2 115 167 558776354 558776304 1.010000e-07 69.4
34 TraesCS5B01G254900 chr2D 90.196 51 4 1 3335 3385 76642958 76643007 1.300000e-06 65.8
35 TraesCS5B01G254900 chr7D 93.590 78 5 0 5024 5101 542093144 542093221 3.550000e-22 117.0
36 TraesCS5B01G254900 chr7D 85.915 71 7 3 118 186 26058789 26058858 7.790000e-09 73.1
37 TraesCS5B01G254900 chr7D 91.837 49 3 1 132 179 26004272 26004320 3.630000e-07 67.6
38 TraesCS5B01G254900 chr6B 90.588 85 6 2 5021 5103 210282610 210282526 1.650000e-20 111.0
39 TraesCS5B01G254900 chr6B 84.314 102 5 7 3295 3394 161351225 161351317 7.740000e-14 89.8
40 TraesCS5B01G254900 chr6B 86.667 60 6 2 132 189 716319826 716319767 1.300000e-06 65.8
41 TraesCS5B01G254900 chr7A 91.358 81 5 2 5024 5103 350571793 350571872 5.940000e-20 110.0
42 TraesCS5B01G254900 chr7A 88.710 62 1 4 3335 3390 101858487 101858548 2.800000e-08 71.3
43 TraesCS5B01G254900 chr7A 85.246 61 5 3 3333 3392 286530675 286530732 6.070000e-05 60.2
44 TraesCS5B01G254900 chr2B 88.889 90 8 2 5015 5102 177401672 177401761 5.940000e-20 110.0
45 TraesCS5B01G254900 chr3A 91.026 78 7 0 5021 5098 290430102 290430025 7.680000e-19 106.0
46 TraesCS5B01G254900 chr3A 83.333 66 8 3 3335 3400 117319710 117319648 2.180000e-04 58.4
47 TraesCS5B01G254900 chr1B 83.333 114 8 5 3279 3390 22328240 22328136 1.660000e-15 95.3
48 TraesCS5B01G254900 chr1B 83.516 91 7 5 3295 3385 437599703 437599785 1.680000e-10 78.7
49 TraesCS5B01G254900 chr1B 93.617 47 1 2 132 177 151072485 151072440 1.010000e-07 69.4
50 TraesCS5B01G254900 chr1D 85.263 95 4 4 3298 3391 101285232 101285147 7.740000e-14 89.8
51 TraesCS5B01G254900 chr1D 84.615 91 6 5 3295 3385 325484491 325484573 3.600000e-12 84.2
52 TraesCS5B01G254900 chr1D 93.478 46 2 1 3296 3341 22557828 22557784 3.630000e-07 67.6
53 TraesCS5B01G254900 chr6D 92.593 54 3 1 3335 3387 430388442 430388495 6.020000e-10 76.8
54 TraesCS5B01G254900 chr6D 100.000 37 0 0 3298 3334 353037686 353037722 1.010000e-07 69.4
55 TraesCS5B01G254900 chr3D 97.674 43 1 0 132 174 587944953 587944911 2.170000e-09 75.0
56 TraesCS5B01G254900 chr3D 85.938 64 6 3 132 195 170861795 170861855 1.300000e-06 65.8
57 TraesCS5B01G254900 chr3D 80.208 96 9 8 3298 3393 250918799 250918714 4.690000e-06 63.9
58 TraesCS5B01G254900 chr2A 95.455 44 2 0 132 175 187480850 187480893 2.800000e-08 71.3
59 TraesCS5B01G254900 chr4D 87.719 57 5 2 124 180 371793954 371794008 1.300000e-06 65.8
60 TraesCS5B01G254900 chr1A 79.612 103 12 7 3291 3393 313907263 313907356 1.300000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G254900 chr5B 437565657 437571264 5607 False 10357.000000 10357 100.000000 1 5608 1 chr5B.!!$F7 5607
1 TraesCS5B01G254900 chr5B 437594327 437595331 1004 False 753.000000 992 93.926000 4350 5429 2 chr5B.!!$F8 1079
2 TraesCS5B01G254900 chr5B 437610256 437611809 1553 False 528.000000 874 85.569500 4350 5419 2 chr5B.!!$F9 1069
3 TraesCS5B01G254900 chr5D 369069224 369075638 6414 False 1018.571429 5773 91.813857 19 5429 7 chr5D.!!$F4 5410
4 TraesCS5B01G254900 chr5A 471471349 471475972 4623 False 1622.500000 5483 89.251000 456 5004 4 chr5A.!!$F2 4548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 304 0.033642 GGATGCTCTAGGTTACCCGC 59.966 60.000 0.00 0.00 35.12 6.13 F
656 1440 0.255033 TAGCGAGTCTCAGGCCTGTA 59.745 55.000 31.58 18.61 0.00 2.74 F
707 1491 0.976641 CAGAGTCCACAAGGCTGGTA 59.023 55.000 0.00 0.00 32.50 3.25 F
734 1518 1.000717 CAAAATCCGGCAACCTTTCGT 60.001 47.619 0.00 0.00 0.00 3.85 F
742 1526 2.033194 CAACCTTTCGTCGAGCCCC 61.033 63.158 0.00 0.00 0.00 5.80 F
2621 3569 2.031682 GGCAACGCTGAGGCAAATATAG 60.032 50.000 0.00 0.00 38.60 1.31 F
4032 4983 0.814010 GTTGGCAACTGACACGAGGT 60.814 55.000 22.66 0.00 29.05 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1335 2270 1.596934 GTCATCCTTCTCCGCCACA 59.403 57.895 0.0 0.0 0.00 4.17 R
2128 3071 1.821136 CAGGGAATCTCAGGGCAAAAC 59.179 52.381 0.0 0.0 0.00 2.43 R
2133 3076 1.821136 CAAAACAGGGAATCTCAGGGC 59.179 52.381 0.0 0.0 0.00 5.19 R
2621 3569 1.888512 TCCCAACATTTTCAGCTCTGC 59.111 47.619 0.0 0.0 0.00 4.26 R
2634 3582 3.826524 TGCAAAACTGTAGATCCCAACA 58.173 40.909 0.0 0.0 0.00 3.33 R
4595 5549 0.608130 CGATCCTTCACTGTCCACCA 59.392 55.000 0.0 0.0 0.00 4.17 R
5459 7371 0.037975 ACGTAGGGTTGCGGTAGTTG 60.038 55.000 0.0 0.0 36.68 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.583101 TGATAGGACCCTCTGACAGACT 59.417 50.000 0.00 0.00 0.00 3.24
53 54 2.516227 TAGGACCCTCTGACAGACTG 57.484 55.000 0.00 0.00 0.00 3.51
145 146 9.965824 ATCTACTGTTACTTTTGAATTGTTTGG 57.034 29.630 0.00 0.00 0.00 3.28
146 147 9.179909 TCTACTGTTACTTTTGAATTGTTTGGA 57.820 29.630 0.00 0.00 0.00 3.53
147 148 9.965824 CTACTGTTACTTTTGAATTGTTTGGAT 57.034 29.630 0.00 0.00 0.00 3.41
149 150 9.097257 ACTGTTACTTTTGAATTGTTTGGATTG 57.903 29.630 0.00 0.00 0.00 2.67
150 151 7.914465 TGTTACTTTTGAATTGTTTGGATTGC 58.086 30.769 0.00 0.00 0.00 3.56
151 152 7.768120 TGTTACTTTTGAATTGTTTGGATTGCT 59.232 29.630 0.00 0.00 0.00 3.91
152 153 8.611757 GTTACTTTTGAATTGTTTGGATTGCTT 58.388 29.630 0.00 0.00 0.00 3.91
153 154 9.823647 TTACTTTTGAATTGTTTGGATTGCTTA 57.176 25.926 0.00 0.00 0.00 3.09
154 155 8.141835 ACTTTTGAATTGTTTGGATTGCTTAC 57.858 30.769 0.00 0.00 0.00 2.34
155 156 7.226523 ACTTTTGAATTGTTTGGATTGCTTACC 59.773 33.333 0.00 0.00 0.00 2.85
156 157 5.798125 TGAATTGTTTGGATTGCTTACCA 57.202 34.783 0.00 0.00 0.00 3.25
157 158 5.537188 TGAATTGTTTGGATTGCTTACCAC 58.463 37.500 0.00 0.00 35.81 4.16
158 159 5.069648 TGAATTGTTTGGATTGCTTACCACA 59.930 36.000 0.00 0.00 35.81 4.17
159 160 5.743636 ATTGTTTGGATTGCTTACCACAT 57.256 34.783 0.00 0.00 35.81 3.21
160 161 4.517952 TGTTTGGATTGCTTACCACATG 57.482 40.909 0.00 0.00 35.81 3.21
161 162 3.894427 TGTTTGGATTGCTTACCACATGT 59.106 39.130 0.00 0.00 35.81 3.21
162 163 5.073428 TGTTTGGATTGCTTACCACATGTA 58.927 37.500 0.00 0.00 35.81 2.29
163 164 5.714333 TGTTTGGATTGCTTACCACATGTAT 59.286 36.000 0.00 0.00 35.81 2.29
164 165 6.127758 TGTTTGGATTGCTTACCACATGTATC 60.128 38.462 0.00 0.00 35.81 2.24
165 166 5.109500 TGGATTGCTTACCACATGTATCA 57.891 39.130 0.00 0.00 0.00 2.15
166 167 4.881273 TGGATTGCTTACCACATGTATCAC 59.119 41.667 0.00 0.00 0.00 3.06
167 168 4.024893 GGATTGCTTACCACATGTATCACG 60.025 45.833 0.00 0.00 0.00 4.35
168 169 2.276201 TGCTTACCACATGTATCACGC 58.724 47.619 0.00 0.00 0.00 5.34
169 170 1.257936 GCTTACCACATGTATCACGCG 59.742 52.381 3.53 3.53 0.00 6.01
170 171 1.858458 CTTACCACATGTATCACGCGG 59.142 52.381 12.47 0.00 0.00 6.46
171 172 0.818938 TACCACATGTATCACGCGGT 59.181 50.000 12.47 2.16 0.00 5.68
172 173 0.739462 ACCACATGTATCACGCGGTG 60.739 55.000 12.47 6.71 34.45 4.94
173 174 0.459411 CCACATGTATCACGCGGTGA 60.459 55.000 12.47 12.51 46.90 4.02
181 182 1.437573 TCACGCGGTGATGATCTCC 59.562 57.895 12.47 3.49 37.67 3.71
182 183 1.037579 TCACGCGGTGATGATCTCCT 61.038 55.000 12.47 0.00 37.67 3.69
183 184 0.873312 CACGCGGTGATGATCTCCTG 60.873 60.000 12.47 6.55 35.23 3.86
184 185 1.323271 ACGCGGTGATGATCTCCTGT 61.323 55.000 12.47 7.11 0.00 4.00
185 186 0.179100 CGCGGTGATGATCTCCTGTT 60.179 55.000 11.33 0.00 0.00 3.16
186 187 1.576356 GCGGTGATGATCTCCTGTTC 58.424 55.000 11.33 0.00 0.00 3.18
187 188 1.137872 GCGGTGATGATCTCCTGTTCT 59.862 52.381 11.33 0.00 0.00 3.01
200 201 2.426024 TCCTGTTCTAGTATGTCCGCAC 59.574 50.000 0.00 0.00 0.00 5.34
214 215 5.446143 TGTCCGCACTGATGTAAATTTTT 57.554 34.783 0.00 0.00 0.00 1.94
215 216 5.457140 TGTCCGCACTGATGTAAATTTTTC 58.543 37.500 0.00 0.00 0.00 2.29
216 217 5.240623 TGTCCGCACTGATGTAAATTTTTCT 59.759 36.000 0.00 0.00 0.00 2.52
217 218 5.795441 GTCCGCACTGATGTAAATTTTTCTC 59.205 40.000 0.00 0.00 0.00 2.87
218 219 5.705441 TCCGCACTGATGTAAATTTTTCTCT 59.295 36.000 0.00 0.00 0.00 3.10
220 221 6.863126 CCGCACTGATGTAAATTTTTCTCTTT 59.137 34.615 0.00 0.00 0.00 2.52
221 222 7.148918 CCGCACTGATGTAAATTTTTCTCTTTG 60.149 37.037 0.00 0.00 0.00 2.77
222 223 7.379529 CGCACTGATGTAAATTTTTCTCTTTGT 59.620 33.333 0.00 0.00 0.00 2.83
223 224 9.034544 GCACTGATGTAAATTTTTCTCTTTGTT 57.965 29.630 0.00 0.00 0.00 2.83
230 231 7.923878 TGTAAATTTTTCTCTTTGTTACCTGCC 59.076 33.333 0.00 0.00 0.00 4.85
237 238 3.941483 CTCTTTGTTACCTGCCCTATGTG 59.059 47.826 0.00 0.00 0.00 3.21
278 279 8.721133 AAATTCTTTTTATCACCTGTTAGGGT 57.279 30.769 0.00 0.00 40.58 4.34
279 280 7.939784 ATTCTTTTTATCACCTGTTAGGGTC 57.060 36.000 0.00 0.00 40.58 4.46
280 281 6.697641 TCTTTTTATCACCTGTTAGGGTCT 57.302 37.500 0.00 0.00 40.58 3.85
281 282 7.086685 TCTTTTTATCACCTGTTAGGGTCTT 57.913 36.000 0.00 0.00 40.58 3.01
282 283 8.209802 TCTTTTTATCACCTGTTAGGGTCTTA 57.790 34.615 0.00 0.00 40.58 2.10
283 284 8.319146 TCTTTTTATCACCTGTTAGGGTCTTAG 58.681 37.037 0.00 0.00 40.58 2.18
284 285 6.555463 TTTATCACCTGTTAGGGTCTTAGG 57.445 41.667 0.00 0.00 40.58 2.69
285 286 2.829023 TCACCTGTTAGGGTCTTAGGG 58.171 52.381 0.00 0.00 40.58 3.53
286 287 2.384375 TCACCTGTTAGGGTCTTAGGGA 59.616 50.000 0.00 0.00 40.58 4.20
287 288 3.013648 TCACCTGTTAGGGTCTTAGGGAT 59.986 47.826 0.00 0.00 40.58 3.85
288 289 3.134804 CACCTGTTAGGGTCTTAGGGATG 59.865 52.174 0.00 0.00 40.58 3.51
289 290 2.104963 CCTGTTAGGGTCTTAGGGATGC 59.895 54.545 0.00 0.00 0.00 3.91
290 291 3.041946 CTGTTAGGGTCTTAGGGATGCT 58.958 50.000 0.00 0.00 0.00 3.79
291 292 3.039011 TGTTAGGGTCTTAGGGATGCTC 58.961 50.000 0.00 0.00 0.00 4.26
292 293 3.310193 GTTAGGGTCTTAGGGATGCTCT 58.690 50.000 0.00 0.00 0.00 4.09
293 294 4.078805 TGTTAGGGTCTTAGGGATGCTCTA 60.079 45.833 0.00 0.00 0.00 2.43
294 295 3.252554 AGGGTCTTAGGGATGCTCTAG 57.747 52.381 0.00 0.00 0.00 2.43
295 296 2.158234 AGGGTCTTAGGGATGCTCTAGG 60.158 54.545 0.00 0.00 0.00 3.02
296 297 2.426561 GGGTCTTAGGGATGCTCTAGGT 60.427 54.545 0.00 0.00 0.00 3.08
297 298 3.310193 GGTCTTAGGGATGCTCTAGGTT 58.690 50.000 0.00 0.00 0.00 3.50
298 299 4.481072 GGTCTTAGGGATGCTCTAGGTTA 58.519 47.826 0.00 0.00 0.00 2.85
299 300 4.281435 GGTCTTAGGGATGCTCTAGGTTAC 59.719 50.000 0.00 0.00 0.00 2.50
300 301 4.281435 GTCTTAGGGATGCTCTAGGTTACC 59.719 50.000 0.00 0.00 0.00 2.85
301 302 2.104669 AGGGATGCTCTAGGTTACCC 57.895 55.000 0.00 0.00 36.47 3.69
302 303 0.680061 GGGATGCTCTAGGTTACCCG 59.320 60.000 0.00 0.00 35.12 5.28
303 304 0.033642 GGATGCTCTAGGTTACCCGC 59.966 60.000 0.00 0.00 35.12 6.13
304 305 0.750850 GATGCTCTAGGTTACCCGCA 59.249 55.000 0.00 2.69 35.12 5.69
305 306 1.138266 GATGCTCTAGGTTACCCGCAA 59.862 52.381 0.00 0.00 35.12 4.85
306 307 0.978151 TGCTCTAGGTTACCCGCAAA 59.022 50.000 0.00 0.00 35.12 3.68
307 308 1.348366 TGCTCTAGGTTACCCGCAAAA 59.652 47.619 0.00 0.00 35.12 2.44
308 309 2.224572 TGCTCTAGGTTACCCGCAAAAA 60.225 45.455 0.00 0.00 35.12 1.94
334 335 4.844349 AAAAGATGCTCTAGGTTGCCTA 57.156 40.909 0.00 0.00 34.61 3.93
346 347 2.093658 AGGTTGCCTATGTTCTGTACCG 60.094 50.000 0.00 0.00 28.47 4.02
360 361 8.206325 TGTTCTGTACCGTTGTTTGTTAATTA 57.794 30.769 0.00 0.00 0.00 1.40
364 365 9.539825 TCTGTACCGTTGTTTGTTAATTACTTA 57.460 29.630 0.00 0.00 0.00 2.24
399 400 3.248602 GCATCAAGCCTAGAAACCATACG 59.751 47.826 0.00 0.00 37.23 3.06
423 424 4.578105 TGACAACGATGCATATGCCAATAA 59.422 37.500 24.54 6.17 41.18 1.40
427 428 6.642131 ACAACGATGCATATGCCAATAATTTC 59.358 34.615 24.54 7.78 41.18 2.17
430 431 5.858049 CGATGCATATGCCAATAATTTCGTT 59.142 36.000 24.54 0.00 41.18 3.85
436 437 7.324616 GCATATGCCAATAATTTCGTTCTCTTC 59.675 37.037 17.26 0.00 34.31 2.87
437 438 5.560966 TGCCAATAATTTCGTTCTCTTCC 57.439 39.130 0.00 0.00 0.00 3.46
438 439 5.253330 TGCCAATAATTTCGTTCTCTTCCT 58.747 37.500 0.00 0.00 0.00 3.36
440 441 6.538742 TGCCAATAATTTCGTTCTCTTCCTAG 59.461 38.462 0.00 0.00 0.00 3.02
556 557 4.473520 CCCGCGTCCAATCAGGCT 62.474 66.667 4.92 0.00 37.29 4.58
577 578 2.437359 GCGATGGCAGTGAAGGCT 60.437 61.111 0.00 0.00 39.62 4.58
580 581 1.001641 GATGGCAGTGAAGGCTGGT 60.002 57.895 0.00 0.00 37.00 4.00
582 583 2.072874 ATGGCAGTGAAGGCTGGTGT 62.073 55.000 0.00 0.00 37.00 4.16
584 585 2.912624 GCAGTGAAGGCTGGTGTGC 61.913 63.158 0.00 0.00 37.00 4.57
586 587 2.280797 GTGAAGGCTGGTGTGCGA 60.281 61.111 0.00 0.00 0.00 5.10
588 589 3.414700 GAAGGCTGGTGTGCGACG 61.415 66.667 0.00 0.00 0.00 5.12
598 599 4.738345 GTGCGACGCGACTCGACT 62.738 66.667 21.42 0.00 41.67 4.18
604 608 1.079681 ACGCGACTCGACTCTCTCT 60.080 57.895 15.93 0.00 41.67 3.10
610 1394 2.603110 CGACTCGACTCTCTCTCTCAAG 59.397 54.545 0.00 0.00 0.00 3.02
633 1417 0.378962 CCACCGAGAAACGTTGCAAA 59.621 50.000 9.44 0.00 40.78 3.68
646 1430 1.993370 GTTGCAAACGATAGCGAGTCT 59.007 47.619 7.69 0.00 36.92 3.24
649 1433 1.849219 GCAAACGATAGCGAGTCTCAG 59.151 52.381 7.69 0.00 41.64 3.35
650 1434 2.455032 CAAACGATAGCGAGTCTCAGG 58.545 52.381 7.69 0.00 41.64 3.86
656 1440 0.255033 TAGCGAGTCTCAGGCCTGTA 59.745 55.000 31.58 18.61 0.00 2.74
706 1490 1.056700 ACAGAGTCCACAAGGCTGGT 61.057 55.000 0.00 0.00 32.50 4.00
707 1491 0.976641 CAGAGTCCACAAGGCTGGTA 59.023 55.000 0.00 0.00 32.50 3.25
726 1510 4.412270 CCGCGCAAAATCCGGCAA 62.412 61.111 8.75 0.00 35.14 4.52
734 1518 1.000717 CAAAATCCGGCAACCTTTCGT 60.001 47.619 0.00 0.00 0.00 3.85
742 1526 2.033194 CAACCTTTCGTCGAGCCCC 61.033 63.158 0.00 0.00 0.00 5.80
866 1657 2.033194 GCAACTTCGGGTTCGGAGG 61.033 63.158 0.00 0.00 45.93 4.30
867 1658 2.033194 CAACTTCGGGTTCGGAGGC 61.033 63.158 0.00 0.00 45.93 4.70
868 1659 3.249837 AACTTCGGGTTCGGAGGCC 62.250 63.158 0.00 0.00 45.93 5.19
869 1660 3.702048 CTTCGGGTTCGGAGGCCA 61.702 66.667 5.01 0.00 38.31 5.36
870 1661 3.665675 CTTCGGGTTCGGAGGCCAG 62.666 68.421 5.01 0.00 38.31 4.85
909 1700 2.420722 CGCTTTACTCTCTTCTCCTCGT 59.579 50.000 0.00 0.00 0.00 4.18
961 1752 4.828925 GCCGCTGTGGGAGAGAGC 62.829 72.222 9.65 0.00 37.62 4.09
1160 1951 4.858680 GGTGCTAGGGCTTCCGGC 62.859 72.222 0.00 0.00 39.59 6.13
1574 2517 4.238761 TGTGTGCTCTGTGTTCTACTAC 57.761 45.455 0.00 0.00 0.00 2.73
1579 2522 6.370994 GTGTGCTCTGTGTTCTACTACTAGTA 59.629 42.308 1.89 1.89 0.00 1.82
1581 2524 6.594937 GTGCTCTGTGTTCTACTACTAGTAGT 59.405 42.308 32.39 32.39 46.31 2.73
1734 2677 7.008021 ACTGGTTAAAAAGGATTTGATGCAT 57.992 32.000 0.00 0.00 39.02 3.96
1858 2801 7.765695 ATTTTTCTTGAGCTGTATGGAGAAA 57.234 32.000 0.00 0.00 32.94 2.52
1860 2803 7.765695 TTTTCTTGAGCTGTATGGAGAAAAT 57.234 32.000 0.00 0.00 37.86 1.82
1872 2815 9.778741 CTGTATGGAGAAAATAAGGTGCTATAA 57.221 33.333 0.00 0.00 0.00 0.98
1922 2865 7.792374 TTTGCTAAGGATTGTATGTGATCTC 57.208 36.000 0.00 0.00 0.00 2.75
1923 2866 6.484364 TGCTAAGGATTGTATGTGATCTCA 57.516 37.500 0.00 0.00 0.00 3.27
1925 2868 5.698545 GCTAAGGATTGTATGTGATCTCACC 59.301 44.000 7.81 0.00 45.88 4.02
1931 2874 4.801330 TGTATGTGATCTCACCGAAACT 57.199 40.909 7.81 0.00 45.88 2.66
1949 2892 7.661847 ACCGAAACTTAATCATGAAGAAGTTCT 59.338 33.333 26.30 19.60 40.36 3.01
2034 2977 5.957168 ACATCCATTTGTGTATTGGGAATCA 59.043 36.000 0.00 0.00 0.00 2.57
2047 2990 6.610075 ATTGGGAATCACTGTTGCTATTTT 57.390 33.333 0.00 0.00 0.00 1.82
2048 2991 5.389859 TGGGAATCACTGTTGCTATTTTG 57.610 39.130 0.00 0.00 0.00 2.44
2055 2998 8.579682 AATCACTGTTGCTATTTTGAGTTTTC 57.420 30.769 0.00 0.00 0.00 2.29
2089 3032 9.435688 TTCATATTGTATCGATTATGAACTGGG 57.564 33.333 19.35 0.00 31.47 4.45
2092 3035 5.029807 TGTATCGATTATGAACTGGGCAA 57.970 39.130 1.71 0.00 0.00 4.52
2113 3056 7.255346 GGGCAAGTTAAATGTGTGTACTAAGTT 60.255 37.037 0.00 0.00 0.00 2.66
2128 3071 7.642586 GTGTACTAAGTTTTGTTGGCTAGTTTG 59.357 37.037 0.00 0.00 0.00 2.93
2133 3076 6.720012 AGTTTTGTTGGCTAGTTTGTTTTG 57.280 33.333 0.00 0.00 0.00 2.44
2155 3098 2.556114 CCCTGAGATTCCCTGTTTTGCT 60.556 50.000 0.00 0.00 0.00 3.91
2156 3099 3.160269 CCTGAGATTCCCTGTTTTGCTT 58.840 45.455 0.00 0.00 0.00 3.91
2157 3100 4.335416 CCTGAGATTCCCTGTTTTGCTTA 58.665 43.478 0.00 0.00 0.00 3.09
2162 3105 5.819991 AGATTCCCTGTTTTGCTTATCAGA 58.180 37.500 0.00 0.00 0.00 3.27
2201 3144 5.933463 CCTGTTGTTTTGATATGGTTTGCAT 59.067 36.000 0.00 0.00 0.00 3.96
2208 3151 7.812191 TGTTTTGATATGGTTTGCATCTTGTAC 59.188 33.333 0.00 0.00 0.00 2.90
2236 3179 9.942850 CTATCCACACCATTATTTTTCCTTTTT 57.057 29.630 0.00 0.00 0.00 1.94
2263 3208 5.234329 ACTGTTGTGTCAACGATTACTCAAG 59.766 40.000 7.87 0.54 31.81 3.02
2384 3329 9.643652 GTAGCTCAGAAAAATATCTTGATTTCG 57.356 33.333 0.00 0.00 36.99 3.46
2478 3426 8.870075 ATATATTTCTTATTTGCTCCACTCCC 57.130 34.615 0.00 0.00 0.00 4.30
2480 3428 4.591321 TTCTTATTTGCTCCACTCCCAT 57.409 40.909 0.00 0.00 0.00 4.00
2621 3569 2.031682 GGCAACGCTGAGGCAAATATAG 60.032 50.000 0.00 0.00 38.60 1.31
2634 3582 5.832060 AGGCAAATATAGCAGAGCTGAAAAT 59.168 36.000 0.85 0.00 40.10 1.82
2640 3588 1.891150 AGCAGAGCTGAAAATGTTGGG 59.109 47.619 0.85 0.00 37.57 4.12
2641 3589 1.888512 GCAGAGCTGAAAATGTTGGGA 59.111 47.619 0.85 0.00 0.00 4.37
2643 3591 3.428589 GCAGAGCTGAAAATGTTGGGATC 60.429 47.826 0.85 0.00 0.00 3.36
2855 3803 9.519191 TTTACATATTGGCTAGTTGCATCATAT 57.481 29.630 0.00 0.00 45.15 1.78
2860 3808 3.318839 TGGCTAGTTGCATCATATTTGGC 59.681 43.478 0.00 0.00 45.15 4.52
2869 3817 5.387788 TGCATCATATTTGGCCTTAGTGAT 58.612 37.500 3.32 4.88 0.00 3.06
2877 3825 9.305925 CATATTTGGCCTTAGTGATTTTCTTTC 57.694 33.333 3.32 0.00 0.00 2.62
2910 3858 2.656947 TTAGTATTCATGGGGCTGCC 57.343 50.000 11.05 11.05 0.00 4.85
3046 3994 2.233186 TGAGGACTCTCTCATGTTGCAG 59.767 50.000 0.56 0.00 38.70 4.41
3047 3995 2.233431 GAGGACTCTCTCATGTTGCAGT 59.767 50.000 0.00 0.00 37.07 4.40
3048 3996 2.233431 AGGACTCTCTCATGTTGCAGTC 59.767 50.000 0.00 1.18 0.00 3.51
3051 3999 2.896044 ACTCTCTCATGTTGCAGTCTCA 59.104 45.455 0.00 0.00 0.00 3.27
3121 4071 6.032094 GCATTTTAGATATATTGCGCATGCT 58.968 36.000 12.75 1.22 43.34 3.79
3126 4076 9.816354 TTTTAGATATATTGCGCATGCTATAGA 57.184 29.630 12.75 3.40 41.06 1.98
3213 4163 9.908152 GTACCAAATGCAAGAAAAGTAAACTAT 57.092 29.630 0.00 0.00 0.00 2.12
3254 4204 6.942976 TCCTGAACCTTCACGTAAATCTTAT 58.057 36.000 0.00 0.00 32.90 1.73
3255 4205 8.070034 TCCTGAACCTTCACGTAAATCTTATA 57.930 34.615 0.00 0.00 32.90 0.98
3256 4206 8.533657 TCCTGAACCTTCACGTAAATCTTATAA 58.466 33.333 0.00 0.00 32.90 0.98
3257 4207 8.818057 CCTGAACCTTCACGTAAATCTTATAAG 58.182 37.037 6.11 6.11 32.90 1.73
3281 4231 5.220710 ACATCACTCTGTTTGCTAGTTCT 57.779 39.130 0.00 0.00 0.00 3.01
3282 4232 5.615289 ACATCACTCTGTTTGCTAGTTCTT 58.385 37.500 0.00 0.00 0.00 2.52
3309 4259 7.007116 TCTCTGTATCTACTACTACCTCCGTA 58.993 42.308 0.00 0.00 0.00 4.02
3310 4260 6.987386 TCTGTATCTACTACTACCTCCGTAC 58.013 44.000 0.00 0.00 0.00 3.67
3311 4261 6.015010 TCTGTATCTACTACTACCTCCGTACC 60.015 46.154 0.00 0.00 0.00 3.34
3312 4262 5.602561 TGTATCTACTACTACCTCCGTACCA 59.397 44.000 0.00 0.00 0.00 3.25
3313 4263 5.636903 ATCTACTACTACCTCCGTACCAA 57.363 43.478 0.00 0.00 0.00 3.67
3314 4264 5.435686 TCTACTACTACCTCCGTACCAAA 57.564 43.478 0.00 0.00 0.00 3.28
3315 4265 5.815581 TCTACTACTACCTCCGTACCAAAA 58.184 41.667 0.00 0.00 0.00 2.44
3316 4266 6.426587 TCTACTACTACCTCCGTACCAAAAT 58.573 40.000 0.00 0.00 0.00 1.82
3317 4267 7.573710 TCTACTACTACCTCCGTACCAAAATA 58.426 38.462 0.00 0.00 0.00 1.40
3318 4268 8.220559 TCTACTACTACCTCCGTACCAAAATAT 58.779 37.037 0.00 0.00 0.00 1.28
3319 4269 9.507329 CTACTACTACCTCCGTACCAAAATATA 57.493 37.037 0.00 0.00 0.00 0.86
3320 4270 8.766994 ACTACTACCTCCGTACCAAAATATAA 57.233 34.615 0.00 0.00 0.00 0.98
3321 4271 8.854117 ACTACTACCTCCGTACCAAAATATAAG 58.146 37.037 0.00 0.00 0.00 1.73
3322 4272 7.902920 ACTACCTCCGTACCAAAATATAAGA 57.097 36.000 0.00 0.00 0.00 2.10
3323 4273 8.488308 ACTACCTCCGTACCAAAATATAAGAT 57.512 34.615 0.00 0.00 0.00 2.40
3324 4274 8.365647 ACTACCTCCGTACCAAAATATAAGATG 58.634 37.037 0.00 0.00 0.00 2.90
3325 4275 7.133133 ACCTCCGTACCAAAATATAAGATGT 57.867 36.000 0.00 0.00 0.00 3.06
3431 4382 7.230510 AGGCATTTGAACTGTAACATCAAACTA 59.769 33.333 7.35 0.00 43.50 2.24
3584 4535 8.002459 AGTTAACCCAAGAACCTTCTCAAAATA 58.998 33.333 0.88 0.00 36.28 1.40
3590 4541 7.922811 CCCAAGAACCTTCTCAAAATATAATGC 59.077 37.037 0.00 0.00 36.28 3.56
3811 4762 9.208022 CAGTGAGTCTTGTCTTATTATGTTTGA 57.792 33.333 0.00 0.00 0.00 2.69
3877 4828 2.235898 AGAGAGGAGATGGTGCAAAGTC 59.764 50.000 0.00 0.00 0.00 3.01
3901 4852 5.355596 CGATCAATCTTTTGCTCTAGGTCT 58.644 41.667 0.00 0.00 32.61 3.85
3929 4880 4.134563 ACACTTTTAAGTTCTGCATCGGT 58.865 39.130 0.00 0.00 37.08 4.69
3932 4883 5.003804 ACTTTTAAGTTCTGCATCGGTGAT 58.996 37.500 0.00 0.00 35.21 3.06
3963 4914 2.354510 CTGAAGAAAGCACGTGGAAACA 59.645 45.455 18.88 0.00 38.70 2.83
3964 4915 2.948979 TGAAGAAAGCACGTGGAAACAT 59.051 40.909 18.88 0.00 46.14 2.71
3965 4916 3.380004 TGAAGAAAGCACGTGGAAACATT 59.620 39.130 18.88 0.00 46.14 2.71
4009 4960 3.434167 GGAGGCAGCAAATTCTATCCTGA 60.434 47.826 0.00 0.00 0.00 3.86
4013 4964 4.261489 GGCAGCAAATTCTATCCTGACATG 60.261 45.833 0.00 0.00 31.90 3.21
4032 4983 0.814010 GTTGGCAACTGACACGAGGT 60.814 55.000 22.66 0.00 29.05 3.85
4199 5150 3.904717 CCCAGAGAGAGCTCCTTACTTA 58.095 50.000 10.93 0.00 42.30 2.24
4209 5160 3.118592 AGCTCCTTACTTACATCACCAGC 60.119 47.826 0.00 0.00 0.00 4.85
4239 5190 2.359602 CACTGTGCAGAGGGCCAG 60.360 66.667 16.19 7.01 43.89 4.85
4348 5302 2.255252 CAACCAAGGCGGCTTTCG 59.745 61.111 23.19 17.01 39.03 3.46
4369 5323 1.683365 CACCAATGGGGAGGCTTGG 60.683 63.158 3.55 0.00 44.06 3.61
4370 5324 1.856873 ACCAATGGGGAGGCTTGGA 60.857 57.895 3.55 0.00 41.61 3.53
4542 5496 1.061711 CTGCTTTCCTCAAGAATCGCG 59.938 52.381 0.00 0.00 35.27 5.87
4546 5500 2.448926 TTCCTCAAGAATCGCGACAA 57.551 45.000 12.93 0.00 0.00 3.18
4595 5549 5.298777 GCTGGAAATGCTGATTCAGTTCTAT 59.701 40.000 14.90 3.02 39.94 1.98
4646 5600 1.344438 TGTGTCTCTGCTACAAGGGTG 59.656 52.381 0.00 0.00 0.00 4.61
4649 5603 1.066787 GTCTCTGCTACAAGGGTGTCC 60.067 57.143 0.00 0.00 39.30 4.02
4692 5646 2.470983 TCCAAGATGACGATGCAACA 57.529 45.000 0.00 0.00 0.00 3.33
4693 5647 2.076100 TCCAAGATGACGATGCAACAC 58.924 47.619 0.00 0.00 0.00 3.32
4694 5648 2.079158 CCAAGATGACGATGCAACACT 58.921 47.619 0.00 0.00 0.00 3.55
4695 5649 2.159612 CCAAGATGACGATGCAACACTG 60.160 50.000 0.00 0.00 0.00 3.66
4725 5680 6.354130 ACATGAGGTGTTTTGTACAGTTAGT 58.646 36.000 0.00 0.00 38.01 2.24
4769 5724 1.620819 ACCACTAGTCCAGAACAGCAG 59.379 52.381 0.00 0.00 0.00 4.24
4823 5790 7.819900 GCTATGTAGTCTAAATGAATACCCCTG 59.180 40.741 0.00 0.00 43.31 4.45
4875 5842 1.248486 GTCTTCAGGGGCTCAAAACC 58.752 55.000 0.00 0.00 0.00 3.27
4939 5906 3.569701 GGGGTATGTAATTGGCATCACTG 59.430 47.826 0.00 0.00 0.00 3.66
5023 5990 7.235812 AGAGAAACACTACCTCTGTTCCTAAAT 59.764 37.037 0.00 0.00 36.07 1.40
5024 5991 8.431910 AGAAACACTACCTCTGTTCCTAAATA 57.568 34.615 0.00 0.00 30.34 1.40
5025 5992 8.312564 AGAAACACTACCTCTGTTCCTAAATAC 58.687 37.037 0.00 0.00 30.34 1.89
5026 5993 7.793948 AACACTACCTCTGTTCCTAAATACT 57.206 36.000 0.00 0.00 0.00 2.12
5027 5994 7.407393 ACACTACCTCTGTTCCTAAATACTC 57.593 40.000 0.00 0.00 0.00 2.59
5028 5995 6.380560 ACACTACCTCTGTTCCTAAATACTCC 59.619 42.308 0.00 0.00 0.00 3.85
5029 5996 5.898397 ACTACCTCTGTTCCTAAATACTCCC 59.102 44.000 0.00 0.00 0.00 4.30
5030 5997 4.961585 ACCTCTGTTCCTAAATACTCCCT 58.038 43.478 0.00 0.00 0.00 4.20
5031 5998 4.963628 ACCTCTGTTCCTAAATACTCCCTC 59.036 45.833 0.00 0.00 0.00 4.30
5032 5999 4.345547 CCTCTGTTCCTAAATACTCCCTCC 59.654 50.000 0.00 0.00 0.00 4.30
5033 6000 3.958798 TCTGTTCCTAAATACTCCCTCCG 59.041 47.826 0.00 0.00 0.00 4.63
5034 6001 3.705072 CTGTTCCTAAATACTCCCTCCGT 59.295 47.826 0.00 0.00 0.00 4.69
5035 6002 3.703052 TGTTCCTAAATACTCCCTCCGTC 59.297 47.826 0.00 0.00 0.00 4.79
5036 6003 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
5037 6004 1.969208 CCTAAATACTCCCTCCGTCCC 59.031 57.143 0.00 0.00 0.00 4.46
5038 6005 2.674420 CTAAATACTCCCTCCGTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
5039 6006 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
5040 6007 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
5041 6008 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5042 6009 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5043 6010 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5044 6011 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5045 6012 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5046 6013 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5047 6014 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5048 6015 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5049 6016 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5050 6017 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5051 6018 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
5052 6019 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
5053 6020 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5054 6021 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
5055 6022 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
5056 6023 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
5057 6024 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
5058 6025 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
5059 6026 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
5060 6027 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
5061 6028 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
5062 6029 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
5066 6033 6.846325 AAGTGTCTCAACTTTGTACTAAGC 57.154 37.500 15.69 1.05 37.05 3.09
5067 6034 6.163135 AGTGTCTCAACTTTGTACTAAGCT 57.837 37.500 15.69 2.23 0.00 3.74
5068 6035 6.217294 AGTGTCTCAACTTTGTACTAAGCTC 58.783 40.000 15.69 1.80 0.00 4.09
5069 6036 5.983720 GTGTCTCAACTTTGTACTAAGCTCA 59.016 40.000 15.69 5.15 0.00 4.26
5070 6037 6.479001 GTGTCTCAACTTTGTACTAAGCTCAA 59.521 38.462 15.69 0.73 0.00 3.02
5071 6038 6.701841 TGTCTCAACTTTGTACTAAGCTCAAG 59.298 38.462 15.69 9.14 0.00 3.02
5072 6039 6.924060 GTCTCAACTTTGTACTAAGCTCAAGA 59.076 38.462 15.69 10.92 0.00 3.02
5073 6040 6.924060 TCTCAACTTTGTACTAAGCTCAAGAC 59.076 38.462 15.69 0.00 0.00 3.01
5074 6041 6.578944 TCAACTTTGTACTAAGCTCAAGACA 58.421 36.000 15.69 0.00 0.00 3.41
5075 6042 7.217200 TCAACTTTGTACTAAGCTCAAGACAT 58.783 34.615 15.69 0.00 0.00 3.06
5076 6043 7.715249 TCAACTTTGTACTAAGCTCAAGACATT 59.285 33.333 15.69 0.00 0.00 2.71
5077 6044 8.345565 CAACTTTGTACTAAGCTCAAGACATTT 58.654 33.333 15.69 0.00 0.00 2.32
5078 6045 9.555727 AACTTTGTACTAAGCTCAAGACATTTA 57.444 29.630 15.69 0.00 0.00 1.40
5079 6046 9.726438 ACTTTGTACTAAGCTCAAGACATTTAT 57.274 29.630 15.69 0.00 0.00 1.40
5086 6053 9.959721 ACTAAGCTCAAGACATTTATTTTAGGA 57.040 29.630 3.19 0.00 0.00 2.94
5088 6055 7.308782 AGCTCAAGACATTTATTTTAGGACG 57.691 36.000 0.00 0.00 0.00 4.79
5089 6056 6.316390 AGCTCAAGACATTTATTTTAGGACGG 59.684 38.462 0.00 0.00 0.00 4.79
5090 6057 6.315393 GCTCAAGACATTTATTTTAGGACGGA 59.685 38.462 0.00 0.00 0.00 4.69
5091 6058 7.466050 GCTCAAGACATTTATTTTAGGACGGAG 60.466 40.741 0.00 0.00 0.00 4.63
5092 6059 6.821665 TCAAGACATTTATTTTAGGACGGAGG 59.178 38.462 0.00 0.00 0.00 4.30
5093 6060 5.681639 AGACATTTATTTTAGGACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5094 6061 5.427481 AGACATTTATTTTAGGACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5095 6062 5.681639 ACATTTATTTTAGGACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5160 6721 2.673976 CGTTTGAACGTCGGGATTTT 57.326 45.000 8.04 0.00 46.63 1.82
5209 6770 9.638300 GTTGTCATCATAAACATAGAATTCGAC 57.362 33.333 0.00 0.00 0.00 4.20
5222 6783 4.557205 AGAATTCGACACACAGGAAGTAC 58.443 43.478 0.00 0.00 0.00 2.73
5253 6814 0.885196 AGACGAAGAGCAGACCAGAC 59.115 55.000 0.00 0.00 0.00 3.51
5319 6880 7.990886 TCTGAACTTGTTAGATGGTTGTACTTT 59.009 33.333 0.00 0.00 0.00 2.66
5357 7269 5.390885 GCATTTGCTATTTCTCAAGTGACGA 60.391 40.000 0.00 0.00 38.21 4.20
5375 7287 5.629020 GTGACGAAATTTAGCTTGCAATCAA 59.371 36.000 0.00 0.00 0.00 2.57
5381 7293 4.355543 TTTAGCTTGCAATCAATCCGTC 57.644 40.909 0.00 0.00 0.00 4.79
5429 7341 4.222847 CTCGGGGCTTAGACGGGC 62.223 72.222 0.00 0.00 0.00 6.13
5430 7342 4.772231 TCGGGGCTTAGACGGGCT 62.772 66.667 0.00 0.00 0.00 5.19
5431 7343 2.836360 CGGGGCTTAGACGGGCTA 60.836 66.667 0.00 0.00 0.00 3.93
5432 7344 2.820261 GGGGCTTAGACGGGCTAC 59.180 66.667 0.00 0.00 0.00 3.58
5442 7354 3.037428 CGGGCTACGTAGGGCTAC 58.963 66.667 23.47 6.66 37.93 3.58
5443 7355 1.825191 CGGGCTACGTAGGGCTACA 60.825 63.158 23.47 0.00 37.93 2.74
5444 7356 1.177256 CGGGCTACGTAGGGCTACAT 61.177 60.000 23.47 0.00 37.93 2.29
5445 7357 0.317479 GGGCTACGTAGGGCTACATG 59.683 60.000 23.47 0.00 35.87 3.21
5446 7358 1.038280 GGCTACGTAGGGCTACATGT 58.962 55.000 23.47 2.69 35.87 3.21
5447 7359 1.000496 GGCTACGTAGGGCTACATGTC 60.000 57.143 23.47 3.11 35.87 3.06
5448 7360 1.334779 GCTACGTAGGGCTACATGTCG 60.335 57.143 23.47 0.00 35.87 4.35
5449 7361 1.945394 CTACGTAGGGCTACATGTCGT 59.055 52.381 15.07 6.68 35.87 4.34
5450 7362 0.737219 ACGTAGGGCTACATGTCGTC 59.263 55.000 0.00 0.00 35.87 4.20
5451 7363 1.022735 CGTAGGGCTACATGTCGTCT 58.977 55.000 0.00 1.18 35.87 4.18
5452 7364 1.002684 CGTAGGGCTACATGTCGTCTC 60.003 57.143 0.00 0.00 35.87 3.36
5453 7365 1.337387 GTAGGGCTACATGTCGTCTCC 59.663 57.143 0.00 0.05 36.15 3.71
5454 7366 0.324368 AGGGCTACATGTCGTCTCCA 60.324 55.000 0.00 0.00 0.00 3.86
5455 7367 0.103208 GGGCTACATGTCGTCTCCAG 59.897 60.000 0.00 0.00 0.00 3.86
5456 7368 0.103208 GGCTACATGTCGTCTCCAGG 59.897 60.000 0.00 0.00 0.00 4.45
5457 7369 0.103208 GCTACATGTCGTCTCCAGGG 59.897 60.000 0.00 0.00 0.00 4.45
5458 7370 1.475403 CTACATGTCGTCTCCAGGGT 58.525 55.000 0.00 0.00 0.00 4.34
5459 7371 1.405821 CTACATGTCGTCTCCAGGGTC 59.594 57.143 0.00 0.00 0.00 4.46
5460 7372 0.541998 ACATGTCGTCTCCAGGGTCA 60.542 55.000 0.00 0.00 0.00 4.02
5461 7373 0.608130 CATGTCGTCTCCAGGGTCAA 59.392 55.000 0.00 0.00 0.00 3.18
5462 7374 0.608640 ATGTCGTCTCCAGGGTCAAC 59.391 55.000 0.00 0.00 0.00 3.18
5463 7375 0.469331 TGTCGTCTCCAGGGTCAACT 60.469 55.000 0.00 0.00 0.00 3.16
5464 7376 1.202964 TGTCGTCTCCAGGGTCAACTA 60.203 52.381 0.00 0.00 0.00 2.24
5465 7377 1.201880 GTCGTCTCCAGGGTCAACTAC 59.798 57.143 0.00 0.00 0.00 2.73
5473 7385 3.976758 GGTCAACTACCGCAACCC 58.023 61.111 0.00 0.00 38.88 4.11
5474 7386 1.373812 GGTCAACTACCGCAACCCT 59.626 57.895 0.00 0.00 38.88 4.34
5475 7387 0.609662 GGTCAACTACCGCAACCCTA 59.390 55.000 0.00 0.00 38.88 3.53
5476 7388 1.673923 GGTCAACTACCGCAACCCTAC 60.674 57.143 0.00 0.00 38.88 3.18
5477 7389 0.244450 TCAACTACCGCAACCCTACG 59.756 55.000 0.00 0.00 0.00 3.51
5478 7390 0.037975 CAACTACCGCAACCCTACGT 60.038 55.000 0.00 0.00 0.00 3.57
5479 7391 1.202114 CAACTACCGCAACCCTACGTA 59.798 52.381 0.00 0.00 0.00 3.57
5480 7392 1.098050 ACTACCGCAACCCTACGTAG 58.902 55.000 15.92 15.92 0.00 3.51
5481 7393 1.340017 ACTACCGCAACCCTACGTAGA 60.340 52.381 24.15 0.00 0.00 2.59
5482 7394 1.745087 CTACCGCAACCCTACGTAGAA 59.255 52.381 24.15 0.00 0.00 2.10
5483 7395 1.188863 ACCGCAACCCTACGTAGAAT 58.811 50.000 24.15 8.40 0.00 2.40
5484 7396 1.551883 ACCGCAACCCTACGTAGAATT 59.448 47.619 24.15 13.91 0.00 2.17
5485 7397 2.027837 ACCGCAACCCTACGTAGAATTT 60.028 45.455 24.15 10.35 0.00 1.82
5486 7398 3.004862 CCGCAACCCTACGTAGAATTTT 58.995 45.455 24.15 7.96 0.00 1.82
5487 7399 3.181514 CCGCAACCCTACGTAGAATTTTG 60.182 47.826 24.15 18.71 0.00 2.44
5488 7400 3.181514 CGCAACCCTACGTAGAATTTTGG 60.182 47.826 24.15 16.56 0.00 3.28
5489 7401 3.128068 GCAACCCTACGTAGAATTTTGGG 59.872 47.826 24.15 17.07 39.06 4.12
5490 7402 3.639672 ACCCTACGTAGAATTTTGGGG 57.360 47.619 24.15 16.35 37.56 4.96
5491 7403 2.240414 ACCCTACGTAGAATTTTGGGGG 59.760 50.000 24.15 15.64 37.56 5.40
5492 7404 2.240414 CCCTACGTAGAATTTTGGGGGT 59.760 50.000 24.15 0.00 0.00 4.95
5493 7405 3.275999 CCTACGTAGAATTTTGGGGGTG 58.724 50.000 24.15 0.00 0.00 4.61
5494 7406 1.541379 ACGTAGAATTTTGGGGGTGC 58.459 50.000 0.00 0.00 0.00 5.01
5495 7407 0.450184 CGTAGAATTTTGGGGGTGCG 59.550 55.000 0.00 0.00 0.00 5.34
5496 7408 0.815095 GTAGAATTTTGGGGGTGCGG 59.185 55.000 0.00 0.00 0.00 5.69
5497 7409 0.406361 TAGAATTTTGGGGGTGCGGT 59.594 50.000 0.00 0.00 0.00 5.68
5498 7410 0.406361 AGAATTTTGGGGGTGCGGTA 59.594 50.000 0.00 0.00 0.00 4.02
5499 7411 1.203075 AGAATTTTGGGGGTGCGGTAA 60.203 47.619 0.00 0.00 0.00 2.85
5500 7412 1.828595 GAATTTTGGGGGTGCGGTAAT 59.171 47.619 0.00 0.00 0.00 1.89
5501 7413 1.945580 ATTTTGGGGGTGCGGTAATT 58.054 45.000 0.00 0.00 0.00 1.40
5502 7414 0.969894 TTTTGGGGGTGCGGTAATTG 59.030 50.000 0.00 0.00 0.00 2.32
5503 7415 0.112606 TTTGGGGGTGCGGTAATTGA 59.887 50.000 0.00 0.00 0.00 2.57
5504 7416 0.609681 TTGGGGGTGCGGTAATTGAC 60.610 55.000 0.00 0.00 0.00 3.18
5505 7417 1.751544 GGGGGTGCGGTAATTGACC 60.752 63.158 0.00 0.00 45.91 4.02
5506 7418 1.751544 GGGGTGCGGTAATTGACCC 60.752 63.158 0.00 0.00 46.81 4.46
5507 7419 1.301954 GGGTGCGGTAATTGACCCT 59.698 57.895 0.00 0.00 46.81 4.34
5508 7420 1.029947 GGGTGCGGTAATTGACCCTG 61.030 60.000 0.00 0.00 46.81 4.45
5509 7421 1.029947 GGTGCGGTAATTGACCCTGG 61.030 60.000 0.00 0.00 46.81 4.45
5510 7422 0.035820 GTGCGGTAATTGACCCTGGA 60.036 55.000 0.00 0.00 46.81 3.86
5511 7423 0.251916 TGCGGTAATTGACCCTGGAG 59.748 55.000 0.00 0.00 46.81 3.86
5512 7424 0.463833 GCGGTAATTGACCCTGGAGG 60.464 60.000 0.00 0.00 46.81 4.30
5513 7425 0.463833 CGGTAATTGACCCTGGAGGC 60.464 60.000 0.00 0.00 46.81 4.70
5514 7426 0.463833 GGTAATTGACCCTGGAGGCG 60.464 60.000 0.00 0.00 43.25 5.52
5515 7427 0.463833 GTAATTGACCCTGGAGGCGG 60.464 60.000 0.00 0.00 40.58 6.13
5516 7428 0.619255 TAATTGACCCTGGAGGCGGA 60.619 55.000 0.00 0.00 40.58 5.54
5517 7429 2.198304 AATTGACCCTGGAGGCGGAC 62.198 60.000 0.00 0.00 40.58 4.79
5539 7451 4.896829 CCTAGAGGGCCGCCGAGA 62.897 72.222 2.73 0.00 0.00 4.04
5540 7452 3.597728 CTAGAGGGCCGCCGAGAC 61.598 72.222 2.73 0.00 0.00 3.36
5541 7453 4.435970 TAGAGGGCCGCCGAGACA 62.436 66.667 2.73 0.00 0.00 3.41
5544 7456 4.753662 AGGGCCGCCGAGACAGTA 62.754 66.667 2.55 0.00 0.00 2.74
5545 7457 4.208686 GGGCCGCCGAGACAGTAG 62.209 72.222 2.55 0.00 0.00 2.57
5546 7458 3.138798 GGCCGCCGAGACAGTAGA 61.139 66.667 0.00 0.00 0.00 2.59
5547 7459 2.409651 GCCGCCGAGACAGTAGAG 59.590 66.667 0.00 0.00 0.00 2.43
5548 7460 2.113433 GCCGCCGAGACAGTAGAGA 61.113 63.158 0.00 0.00 0.00 3.10
5549 7461 1.654954 GCCGCCGAGACAGTAGAGAA 61.655 60.000 0.00 0.00 0.00 2.87
5550 7462 0.378962 CCGCCGAGACAGTAGAGAAG 59.621 60.000 0.00 0.00 0.00 2.85
5551 7463 0.378962 CGCCGAGACAGTAGAGAAGG 59.621 60.000 0.00 0.00 0.00 3.46
5552 7464 0.101579 GCCGAGACAGTAGAGAAGGC 59.898 60.000 0.00 0.00 36.32 4.35
5553 7465 1.464734 CCGAGACAGTAGAGAAGGCA 58.535 55.000 0.00 0.00 0.00 4.75
5554 7466 1.819288 CCGAGACAGTAGAGAAGGCAA 59.181 52.381 0.00 0.00 0.00 4.52
5555 7467 2.416162 CCGAGACAGTAGAGAAGGCAAC 60.416 54.545 0.00 0.00 0.00 4.17
5568 7480 3.143675 GGCAACTCGAGCAAGATGA 57.856 52.632 13.61 0.00 0.00 2.92
5569 7481 1.005340 GGCAACTCGAGCAAGATGAG 58.995 55.000 13.61 0.00 35.85 2.90
5570 7482 0.373024 GCAACTCGAGCAAGATGAGC 59.627 55.000 13.61 1.41 32.98 4.26
5571 7483 1.005340 CAACTCGAGCAAGATGAGCC 58.995 55.000 13.61 0.00 32.98 4.70
5572 7484 0.459237 AACTCGAGCAAGATGAGCCG 60.459 55.000 13.61 0.00 32.98 5.52
5573 7485 1.140589 CTCGAGCAAGATGAGCCGT 59.859 57.895 0.00 0.00 0.00 5.68
5574 7486 1.144565 CTCGAGCAAGATGAGCCGTG 61.145 60.000 0.00 0.00 0.00 4.94
5575 7487 2.806856 CGAGCAAGATGAGCCGTGC 61.807 63.158 0.00 0.00 40.90 5.34
5576 7488 2.806856 GAGCAAGATGAGCCGTGCG 61.807 63.158 0.00 0.00 44.30 5.34
5577 7489 2.815211 GCAAGATGAGCCGTGCGA 60.815 61.111 0.00 0.00 32.48 5.10
5578 7490 2.806856 GCAAGATGAGCCGTGCGAG 61.807 63.158 0.00 0.00 32.48 5.03
5579 7491 2.510238 AAGATGAGCCGTGCGAGC 60.510 61.111 0.00 0.00 0.00 5.03
5580 7492 4.521062 AGATGAGCCGTGCGAGCC 62.521 66.667 0.00 0.00 0.00 4.70
5593 7505 3.423154 GAGCCGCGGGTCACAAAG 61.423 66.667 43.37 10.65 41.72 2.77
5594 7506 3.876589 GAGCCGCGGGTCACAAAGA 62.877 63.158 43.37 0.00 41.72 2.52
5595 7507 2.746277 GCCGCGGGTCACAAAGAT 60.746 61.111 29.38 0.00 0.00 2.40
5596 7508 2.750888 GCCGCGGGTCACAAAGATC 61.751 63.158 29.38 0.41 0.00 2.75
5597 7509 1.375396 CCGCGGGTCACAAAGATCA 60.375 57.895 20.10 0.00 0.00 2.92
5598 7510 1.361668 CCGCGGGTCACAAAGATCAG 61.362 60.000 20.10 0.00 0.00 2.90
5599 7511 0.670546 CGCGGGTCACAAAGATCAGT 60.671 55.000 0.00 0.00 0.00 3.41
5600 7512 0.798776 GCGGGTCACAAAGATCAGTG 59.201 55.000 0.00 0.86 37.10 3.66
5601 7513 1.442769 CGGGTCACAAAGATCAGTGG 58.557 55.000 11.46 0.00 36.43 4.00
5602 7514 1.270839 CGGGTCACAAAGATCAGTGGT 60.271 52.381 11.46 0.00 36.43 4.16
5603 7515 2.810400 CGGGTCACAAAGATCAGTGGTT 60.810 50.000 11.46 0.00 36.43 3.67
5604 7516 3.556213 CGGGTCACAAAGATCAGTGGTTA 60.556 47.826 11.46 0.00 36.43 2.85
5605 7517 4.589908 GGGTCACAAAGATCAGTGGTTAT 58.410 43.478 11.46 0.00 36.43 1.89
5606 7518 4.396166 GGGTCACAAAGATCAGTGGTTATG 59.604 45.833 11.46 0.00 36.43 1.90
5607 7519 4.142600 GGTCACAAAGATCAGTGGTTATGC 60.143 45.833 11.46 0.00 36.43 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.827898 GGCCTCACGTCCTCCTCG 61.828 72.222 0.00 0.00 0.00 4.63
1 2 3.827898 CGGCCTCACGTCCTCCTC 61.828 72.222 0.00 0.00 0.00 3.71
15 16 4.101790 CATGTGGTCGTTGCCGGC 62.102 66.667 22.73 22.73 38.17 6.13
16 17 0.461163 TATCATGTGGTCGTTGCCGG 60.461 55.000 0.00 0.00 33.95 6.13
17 18 0.930310 CTATCATGTGGTCGTTGCCG 59.070 55.000 0.00 0.00 0.00 5.69
31 32 2.583101 AGTCTGTCAGAGGGTCCTATCA 59.417 50.000 1.75 0.00 0.00 2.15
33 34 2.952702 GCAGTCTGTCAGAGGGTCCTAT 60.953 54.545 1.75 0.00 0.00 2.57
34 35 1.617263 GCAGTCTGTCAGAGGGTCCTA 60.617 57.143 1.75 0.00 0.00 2.94
52 53 2.763215 GGTTCATCACCCCTGGCA 59.237 61.111 0.00 0.00 40.19 4.92
89 90 2.239400 TCATGACGTCCACAGAACTCT 58.761 47.619 14.12 0.00 0.00 3.24
99 100 6.369059 AGATCATCAAAAATCATGACGTCC 57.631 37.500 14.12 0.00 31.80 4.79
101 102 7.550551 ACAGTAGATCATCAAAAATCATGACGT 59.449 33.333 0.00 0.00 31.80 4.34
129 130 7.226523 GGTAAGCAATCCAAACAATTCAAAAGT 59.773 33.333 0.00 0.00 0.00 2.66
131 132 7.011857 GTGGTAAGCAATCCAAACAATTCAAAA 59.988 33.333 0.00 0.00 35.38 2.44
132 133 6.481644 GTGGTAAGCAATCCAAACAATTCAAA 59.518 34.615 0.00 0.00 35.38 2.69
133 134 5.988561 GTGGTAAGCAATCCAAACAATTCAA 59.011 36.000 0.00 0.00 35.38 2.69
134 135 5.069648 TGTGGTAAGCAATCCAAACAATTCA 59.930 36.000 0.00 0.00 35.38 2.57
135 136 5.537188 TGTGGTAAGCAATCCAAACAATTC 58.463 37.500 0.00 0.00 35.38 2.17
136 137 5.543507 TGTGGTAAGCAATCCAAACAATT 57.456 34.783 0.00 0.00 35.38 2.32
137 138 5.011943 ACATGTGGTAAGCAATCCAAACAAT 59.988 36.000 0.00 0.00 35.38 2.71
138 139 4.343526 ACATGTGGTAAGCAATCCAAACAA 59.656 37.500 0.00 0.00 35.38 2.83
139 140 3.894427 ACATGTGGTAAGCAATCCAAACA 59.106 39.130 0.00 0.00 35.38 2.83
140 141 4.519540 ACATGTGGTAAGCAATCCAAAC 57.480 40.909 0.00 0.00 35.38 2.93
141 142 5.948758 TGATACATGTGGTAAGCAATCCAAA 59.051 36.000 9.11 0.00 35.14 3.28
142 143 5.356751 GTGATACATGTGGTAAGCAATCCAA 59.643 40.000 9.11 0.00 35.14 3.53
143 144 4.881273 GTGATACATGTGGTAAGCAATCCA 59.119 41.667 9.11 0.00 35.14 3.41
144 145 4.024893 CGTGATACATGTGGTAAGCAATCC 60.025 45.833 9.11 0.00 35.14 3.01
145 146 4.552767 GCGTGATACATGTGGTAAGCAATC 60.553 45.833 9.11 1.17 35.14 2.67
146 147 3.312421 GCGTGATACATGTGGTAAGCAAT 59.688 43.478 9.11 0.00 35.14 3.56
147 148 2.675844 GCGTGATACATGTGGTAAGCAA 59.324 45.455 9.11 0.00 35.14 3.91
148 149 2.276201 GCGTGATACATGTGGTAAGCA 58.724 47.619 9.11 0.00 35.14 3.91
149 150 1.257936 CGCGTGATACATGTGGTAAGC 59.742 52.381 9.11 7.90 35.14 3.09
150 151 1.858458 CCGCGTGATACATGTGGTAAG 59.142 52.381 9.11 0.00 43.63 2.34
151 152 1.929230 CCGCGTGATACATGTGGTAA 58.071 50.000 9.11 0.00 43.63 2.85
152 153 3.652292 CCGCGTGATACATGTGGTA 57.348 52.632 9.11 0.00 43.63 3.25
153 154 4.513519 CCGCGTGATACATGTGGT 57.486 55.556 9.11 0.00 43.63 4.16
155 156 3.043340 TCACCGCGTGATACATGTG 57.957 52.632 9.11 3.20 37.67 3.21
163 164 1.037579 AGGAGATCATCACCGCGTGA 61.038 55.000 4.92 9.67 46.90 4.35
164 165 0.873312 CAGGAGATCATCACCGCGTG 60.873 60.000 4.92 3.64 32.07 5.34
165 166 1.323271 ACAGGAGATCATCACCGCGT 61.323 55.000 4.92 0.00 32.07 6.01
166 167 0.179100 AACAGGAGATCATCACCGCG 60.179 55.000 0.00 0.00 32.07 6.46
167 168 1.137872 AGAACAGGAGATCATCACCGC 59.862 52.381 0.00 0.00 32.07 5.68
168 169 3.634448 ACTAGAACAGGAGATCATCACCG 59.366 47.826 0.00 0.00 32.07 4.94
169 170 6.266558 ACATACTAGAACAGGAGATCATCACC 59.733 42.308 0.00 0.00 0.00 4.02
170 171 7.283625 ACATACTAGAACAGGAGATCATCAC 57.716 40.000 0.00 0.00 0.00 3.06
171 172 6.491745 GGACATACTAGAACAGGAGATCATCA 59.508 42.308 0.00 0.00 0.00 3.07
172 173 6.348950 CGGACATACTAGAACAGGAGATCATC 60.349 46.154 0.00 0.00 0.00 2.92
173 174 5.475220 CGGACATACTAGAACAGGAGATCAT 59.525 44.000 0.00 0.00 0.00 2.45
174 175 4.822350 CGGACATACTAGAACAGGAGATCA 59.178 45.833 0.00 0.00 0.00 2.92
175 176 4.320641 GCGGACATACTAGAACAGGAGATC 60.321 50.000 0.00 0.00 0.00 2.75
176 177 3.570550 GCGGACATACTAGAACAGGAGAT 59.429 47.826 0.00 0.00 0.00 2.75
177 178 2.950309 GCGGACATACTAGAACAGGAGA 59.050 50.000 0.00 0.00 0.00 3.71
178 179 2.688446 TGCGGACATACTAGAACAGGAG 59.312 50.000 0.00 0.00 0.00 3.69
179 180 2.426024 GTGCGGACATACTAGAACAGGA 59.574 50.000 0.63 0.00 0.00 3.86
180 181 2.427453 AGTGCGGACATACTAGAACAGG 59.573 50.000 10.52 0.00 0.00 4.00
181 182 3.128764 TCAGTGCGGACATACTAGAACAG 59.871 47.826 10.52 0.00 0.00 3.16
182 183 3.086282 TCAGTGCGGACATACTAGAACA 58.914 45.455 10.52 0.00 0.00 3.18
183 184 3.777465 TCAGTGCGGACATACTAGAAC 57.223 47.619 10.52 0.00 0.00 3.01
184 185 3.699538 ACATCAGTGCGGACATACTAGAA 59.300 43.478 10.52 0.00 0.00 2.10
185 186 3.288092 ACATCAGTGCGGACATACTAGA 58.712 45.455 10.52 0.00 0.00 2.43
186 187 3.717400 ACATCAGTGCGGACATACTAG 57.283 47.619 10.52 0.00 0.00 2.57
187 188 5.585820 TTTACATCAGTGCGGACATACTA 57.414 39.130 10.52 0.00 0.00 1.82
214 215 3.844211 ACATAGGGCAGGTAACAAAGAGA 59.156 43.478 0.00 0.00 41.41 3.10
215 216 3.941483 CACATAGGGCAGGTAACAAAGAG 59.059 47.826 0.00 0.00 41.41 2.85
216 217 3.308117 CCACATAGGGCAGGTAACAAAGA 60.308 47.826 0.00 0.00 41.41 2.52
217 218 3.016736 CCACATAGGGCAGGTAACAAAG 58.983 50.000 0.00 0.00 41.41 2.77
218 219 2.645297 TCCACATAGGGCAGGTAACAAA 59.355 45.455 0.00 0.00 38.24 2.83
220 221 1.959710 TCCACATAGGGCAGGTAACA 58.040 50.000 0.00 0.00 38.24 2.41
221 222 3.577805 AATCCACATAGGGCAGGTAAC 57.422 47.619 0.00 0.00 38.24 2.50
222 223 4.601406 AAAATCCACATAGGGCAGGTAA 57.399 40.909 0.00 0.00 38.24 2.85
223 224 4.601406 AAAAATCCACATAGGGCAGGTA 57.399 40.909 0.00 0.00 38.24 3.08
224 225 3.473113 AAAAATCCACATAGGGCAGGT 57.527 42.857 0.00 0.00 38.24 4.00
252 253 9.816787 ACCCTAACAGGTGATAAAAAGAATTTA 57.183 29.630 0.00 0.00 36.38 1.40
253 254 8.721133 ACCCTAACAGGTGATAAAAAGAATTT 57.279 30.769 0.00 0.00 38.44 1.82
256 257 7.086685 AGACCCTAACAGGTGATAAAAAGAA 57.913 36.000 0.00 0.00 41.42 2.52
257 258 6.697641 AGACCCTAACAGGTGATAAAAAGA 57.302 37.500 0.00 0.00 41.42 2.52
259 260 7.399634 CCTAAGACCCTAACAGGTGATAAAAA 58.600 38.462 0.00 0.00 41.42 1.94
263 264 4.233521 TCCCTAAGACCCTAACAGGTGATA 59.766 45.833 0.00 0.00 41.42 2.15
276 277 2.965562 ACCTAGAGCATCCCTAAGACC 58.034 52.381 0.00 0.00 33.66 3.85
277 278 4.281435 GGTAACCTAGAGCATCCCTAAGAC 59.719 50.000 0.00 0.00 33.66 3.01
278 279 4.481072 GGTAACCTAGAGCATCCCTAAGA 58.519 47.826 0.00 0.00 33.66 2.10
279 280 4.875561 GGTAACCTAGAGCATCCCTAAG 57.124 50.000 0.00 0.00 33.66 2.18
307 308 8.614525 AGGCAACCTAGAGCATCTTTTTCTTTT 61.615 37.037 0.00 0.00 40.19 2.27
308 309 7.199105 AGGCAACCTAGAGCATCTTTTTCTTT 61.199 38.462 0.00 0.00 40.19 2.52
309 310 5.750228 AGGCAACCTAGAGCATCTTTTTCTT 60.750 40.000 0.00 0.00 40.19 2.52
310 311 4.263683 AGGCAACCTAGAGCATCTTTTTCT 60.264 41.667 0.00 0.00 40.19 2.52
311 312 4.013050 AGGCAACCTAGAGCATCTTTTTC 58.987 43.478 0.00 0.00 40.19 2.29
312 313 4.039603 AGGCAACCTAGAGCATCTTTTT 57.960 40.909 0.00 0.00 40.19 1.94
313 314 3.728385 AGGCAACCTAGAGCATCTTTT 57.272 42.857 0.00 0.00 40.19 2.27
314 315 4.164988 ACATAGGCAACCTAGAGCATCTTT 59.835 41.667 0.00 0.00 43.19 2.52
315 316 3.713764 ACATAGGCAACCTAGAGCATCTT 59.286 43.478 0.00 0.00 43.19 2.40
327 328 2.968675 ACGGTACAGAACATAGGCAAC 58.031 47.619 0.00 0.00 0.00 4.17
334 335 6.680874 TTAACAAACAACGGTACAGAACAT 57.319 33.333 0.00 0.00 0.00 2.71
346 347 9.720667 AAACGAGGTAAGTAATTAACAAACAAC 57.279 29.630 0.22 0.00 0.00 3.32
360 361 1.961793 TGCAAGCAAACGAGGTAAGT 58.038 45.000 0.00 0.00 0.00 2.24
364 365 1.267806 CTTGATGCAAGCAAACGAGGT 59.732 47.619 0.00 0.00 44.21 3.85
385 386 3.611113 CGTTGTCACGTATGGTTTCTAGG 59.389 47.826 0.00 0.00 41.84 3.02
399 400 1.670295 TGGCATATGCATCGTTGTCAC 59.330 47.619 28.07 8.04 44.36 3.67
413 414 7.054124 AGGAAGAGAACGAAATTATTGGCATA 58.946 34.615 0.00 0.00 0.00 3.14
448 449 2.370849 ACGCCGGAGTTGGGAATATATT 59.629 45.455 5.05 0.00 0.00 1.28
449 450 1.975680 ACGCCGGAGTTGGGAATATAT 59.024 47.619 5.05 0.00 0.00 0.86
450 451 1.342174 GACGCCGGAGTTGGGAATATA 59.658 52.381 13.57 0.00 0.00 0.86
451 452 0.106149 GACGCCGGAGTTGGGAATAT 59.894 55.000 13.57 0.00 0.00 1.28
452 453 1.518774 GACGCCGGAGTTGGGAATA 59.481 57.895 13.57 0.00 0.00 1.75
453 454 2.267961 GACGCCGGAGTTGGGAAT 59.732 61.111 13.57 0.00 0.00 3.01
454 455 4.367023 CGACGCCGGAGTTGGGAA 62.367 66.667 17.29 0.00 0.00 3.97
556 557 1.078918 CTTCACTGCCATCGCTGGA 60.079 57.895 10.06 0.00 46.37 3.86
577 578 4.994201 GAGTCGCGTCGCACACCA 62.994 66.667 18.75 0.00 0.00 4.17
582 583 4.440987 GAGTCGAGTCGCGTCGCA 62.441 66.667 18.75 1.36 39.90 5.10
584 585 2.020287 GAGAGTCGAGTCGCGTCG 59.980 66.667 14.43 12.39 41.80 5.12
586 587 1.079681 AGAGAGAGTCGAGTCGCGT 60.080 57.895 16.83 7.13 41.80 6.01
588 589 0.928229 GAGAGAGAGAGTCGAGTCGC 59.072 60.000 15.36 15.36 0.00 5.19
589 590 2.287393 TGAGAGAGAGAGTCGAGTCG 57.713 55.000 14.43 6.09 0.00 4.18
590 591 3.857052 TCTTGAGAGAGAGAGTCGAGTC 58.143 50.000 12.54 12.54 0.00 3.36
593 594 3.006940 GCTTCTTGAGAGAGAGAGTCGA 58.993 50.000 0.00 0.00 32.44 4.20
598 599 2.175202 GGTGGCTTCTTGAGAGAGAGA 58.825 52.381 0.00 0.00 32.44 3.10
604 608 1.338107 TTCTCGGTGGCTTCTTGAGA 58.662 50.000 0.00 0.00 34.10 3.27
610 1394 2.613390 AACGTTTCTCGGTGGCTTC 58.387 52.632 0.00 0.00 44.69 3.86
633 1417 1.448922 GGCCTGAGACTCGCTATCGT 61.449 60.000 0.00 0.00 36.96 3.73
646 1430 4.502105 TGAATTGCTTATACAGGCCTGA 57.498 40.909 39.19 22.26 0.00 3.86
649 1433 7.041107 TGAAATTTGAATTGCTTATACAGGCC 58.959 34.615 0.00 0.00 0.00 5.19
650 1434 8.477984 TTGAAATTTGAATTGCTTATACAGGC 57.522 30.769 0.00 0.00 0.00 4.85
656 1440 7.443879 ACGGGTTTTGAAATTTGAATTGCTTAT 59.556 29.630 0.00 0.00 0.00 1.73
677 1461 1.046472 TGGACTCTGTGTTGACGGGT 61.046 55.000 0.00 0.00 0.00 5.28
706 1490 2.539338 GCCGGATTTTGCGCGGATA 61.539 57.895 5.05 0.00 0.00 2.59
707 1491 3.887868 GCCGGATTTTGCGCGGAT 61.888 61.111 5.05 0.00 0.00 4.18
726 1510 3.703127 GGGGGCTCGACGAAAGGT 61.703 66.667 0.00 0.00 0.00 3.50
784 1572 0.404426 GTTAACCTCTTGGGGCTGGT 59.596 55.000 0.00 0.00 40.03 4.00
785 1573 0.323451 GGTTAACCTCTTGGGGCTGG 60.323 60.000 17.83 0.00 40.03 4.85
813 1604 3.701604 CGAGGGAACGAGCCGAAGG 62.702 68.421 1.50 0.00 43.66 3.46
814 1605 2.202623 CGAGGGAACGAGCCGAAG 60.203 66.667 1.50 0.00 35.09 3.79
866 1657 4.083862 GACTCGGGTCCACCTGGC 62.084 72.222 3.28 0.00 42.72 4.85
961 1752 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
1087 1878 4.194720 CCCTTCGGCGTCCTCGAG 62.195 72.222 6.85 5.13 37.93 4.04
1098 1889 4.096003 ATCACGGTGCCCCCTTCG 62.096 66.667 2.51 0.00 0.00 3.79
1335 2270 1.596934 GTCATCCTTCTCCGCCACA 59.403 57.895 0.00 0.00 0.00 4.17
1579 2522 9.148879 AGTAGCAGTATCATCCAAATTAGTACT 57.851 33.333 0.00 0.00 0.00 2.73
1734 2677 7.238096 TGATCCTAAGTTCCTAACCCAGTAAAA 59.762 37.037 0.00 0.00 0.00 1.52
1842 2785 6.115446 CACCTTATTTTCTCCATACAGCTCA 58.885 40.000 0.00 0.00 0.00 4.26
1883 2826 7.669427 TCCTTAGCAAAATCAATCATGTTTGT 58.331 30.769 14.58 2.19 0.00 2.83
1922 2865 7.133891 ACTTCTTCATGATTAAGTTTCGGTG 57.866 36.000 14.39 0.00 0.00 4.94
1923 2866 7.661847 AGAACTTCTTCATGATTAAGTTTCGGT 59.338 33.333 25.13 11.78 41.08 4.69
1979 2922 4.379813 CCATGACACACAATTCCTAGCAAC 60.380 45.833 0.00 0.00 0.00 4.17
2019 2962 3.505680 GCAACAGTGATTCCCAATACACA 59.494 43.478 0.00 0.00 35.97 3.72
2034 2977 6.131544 ACGAAAACTCAAAATAGCAACAGT 57.868 33.333 0.00 0.00 0.00 3.55
2088 3031 7.198306 ACTTAGTACACACATTTAACTTGCC 57.802 36.000 0.00 0.00 0.00 4.52
2089 3032 9.511144 AAAACTTAGTACACACATTTAACTTGC 57.489 29.630 0.00 0.00 0.00 4.01
2098 3041 5.592688 AGCCAACAAAACTTAGTACACACAT 59.407 36.000 0.00 0.00 0.00 3.21
2113 3056 3.935828 GGCAAAACAAACTAGCCAACAAA 59.064 39.130 0.00 0.00 44.59 2.83
2128 3071 1.821136 CAGGGAATCTCAGGGCAAAAC 59.179 52.381 0.00 0.00 0.00 2.43
2133 3076 1.821136 CAAAACAGGGAATCTCAGGGC 59.179 52.381 0.00 0.00 0.00 5.19
2155 3098 7.178628 ACAGGTTACTCTAAACAGCTCTGATAA 59.821 37.037 3.60 0.00 0.00 1.75
2156 3099 6.663953 ACAGGTTACTCTAAACAGCTCTGATA 59.336 38.462 3.60 0.00 0.00 2.15
2157 3100 5.482175 ACAGGTTACTCTAAACAGCTCTGAT 59.518 40.000 3.60 0.00 0.00 2.90
2162 3105 5.291905 ACAACAGGTTACTCTAAACAGCT 57.708 39.130 0.00 0.00 0.00 4.24
2201 3144 3.193395 TGGTGTGGATAGGGTACAAGA 57.807 47.619 0.00 0.00 0.00 3.02
2208 3151 6.136155 AGGAAAAATAATGGTGTGGATAGGG 58.864 40.000 0.00 0.00 0.00 3.53
2236 3179 5.113383 AGTAATCGTTGACACAACAGTGAA 58.887 37.500 13.62 0.00 37.04 3.18
2263 3208 4.445385 GGCATTTTGTCACAGTTCATTGAC 59.555 41.667 0.00 0.00 42.18 3.18
2335 3280 5.131142 ACCCTGATGCCCTAATATAGTATGC 59.869 44.000 0.00 0.00 0.00 3.14
2384 3329 4.578928 ACAAGAGTGGTTGTTACATGGAAC 59.421 41.667 14.29 14.29 37.36 3.62
2456 3404 6.073447 TGGGAGTGGAGCAAATAAGAAATA 57.927 37.500 0.00 0.00 0.00 1.40
2621 3569 1.888512 TCCCAACATTTTCAGCTCTGC 59.111 47.619 0.00 0.00 0.00 4.26
2634 3582 3.826524 TGCAAAACTGTAGATCCCAACA 58.173 40.909 0.00 0.00 0.00 3.33
2640 3588 5.048782 TCAACACCATGCAAAACTGTAGATC 60.049 40.000 0.00 0.00 0.00 2.75
2641 3589 4.826733 TCAACACCATGCAAAACTGTAGAT 59.173 37.500 0.00 0.00 0.00 1.98
2643 3591 4.566545 TCAACACCATGCAAAACTGTAG 57.433 40.909 0.00 0.00 0.00 2.74
2843 3791 5.068198 CACTAAGGCCAAATATGATGCAACT 59.932 40.000 5.01 0.00 0.00 3.16
2855 3803 5.300792 ACGAAAGAAAATCACTAAGGCCAAA 59.699 36.000 5.01 0.00 0.00 3.28
2860 3808 9.946165 AACTTAAACGAAAGAAAATCACTAAGG 57.054 29.630 0.00 0.00 0.00 2.69
2910 3858 6.169094 ACAATGAAACTCCTCATACACAGAG 58.831 40.000 0.00 0.00 34.90 3.35
2968 3916 4.863548 AGATTCCATCCAATGACACATGT 58.136 39.130 0.00 0.00 0.00 3.21
3035 3983 3.079578 ACCAATGAGACTGCAACATGAG 58.920 45.455 0.00 0.00 0.00 2.90
3039 3987 2.929641 TCAACCAATGAGACTGCAACA 58.070 42.857 0.00 0.00 33.04 3.33
3046 3994 2.095059 AGCGCATTTCAACCAATGAGAC 60.095 45.455 11.47 0.00 39.77 3.36
3047 3995 2.095110 CAGCGCATTTCAACCAATGAGA 60.095 45.455 11.47 0.00 39.77 3.27
3048 3996 2.256174 CAGCGCATTTCAACCAATGAG 58.744 47.619 11.47 0.00 39.77 2.90
3051 3999 2.818130 AACAGCGCATTTCAACCAAT 57.182 40.000 11.47 0.00 0.00 3.16
3217 4167 6.264292 TGAAGGTTCAGGAATCGAATGAAAAA 59.736 34.615 7.14 0.00 34.91 1.94
3254 4204 7.228314 ACTAGCAAACAGAGTGATGTACTTA 57.772 36.000 0.00 0.00 40.53 2.24
3255 4205 6.102897 ACTAGCAAACAGAGTGATGTACTT 57.897 37.500 0.00 0.00 40.53 2.24
3256 4206 5.730296 ACTAGCAAACAGAGTGATGTACT 57.270 39.130 0.00 0.00 44.02 2.73
3257 4207 6.159988 AGAACTAGCAAACAGAGTGATGTAC 58.840 40.000 0.00 0.00 31.70 2.90
3281 4231 7.714377 CGGAGGTAGTAGTAGATACAGAGAAAA 59.286 40.741 0.00 0.00 36.79 2.29
3282 4232 7.147585 ACGGAGGTAGTAGTAGATACAGAGAAA 60.148 40.741 0.00 0.00 36.79 2.52
3318 4268 9.701098 ACGTCTTGTATCTACAAAAACATCTTA 57.299 29.630 4.49 0.00 44.67 2.10
3319 4269 8.603242 ACGTCTTGTATCTACAAAAACATCTT 57.397 30.769 4.49 0.00 44.67 2.40
3320 4270 8.603242 AACGTCTTGTATCTACAAAAACATCT 57.397 30.769 4.49 0.00 44.67 2.90
3321 4271 9.659830 AAAACGTCTTGTATCTACAAAAACATC 57.340 29.630 4.49 0.00 44.67 3.06
3322 4272 9.445786 CAAAACGTCTTGTATCTACAAAAACAT 57.554 29.630 4.49 0.00 44.67 2.71
3323 4273 8.452534 ACAAAACGTCTTGTATCTACAAAAACA 58.547 29.630 5.22 0.00 44.67 2.83
3324 4274 8.831000 ACAAAACGTCTTGTATCTACAAAAAC 57.169 30.769 5.22 5.19 44.67 2.43
3397 4348 8.200792 TGTTACAGTTCAAATGCCTTGTATTTT 58.799 29.630 0.00 0.00 36.34 1.82
3431 4382 9.869757 AAACTTCTGCTTACAAGTTACAAAAAT 57.130 25.926 0.00 0.00 41.09 1.82
3467 4418 7.433680 ACAAACCAATCTTACTTCACAATTCC 58.566 34.615 0.00 0.00 0.00 3.01
3471 4422 9.959749 GATAAACAAACCAATCTTACTTCACAA 57.040 29.630 0.00 0.00 0.00 3.33
3601 4552 7.833285 AGCTAAGAAACCAACTATCCAAAAA 57.167 32.000 0.00 0.00 0.00 1.94
3610 4561 9.794719 AATTAGAAGTTAGCTAAGAAACCAACT 57.205 29.630 6.38 0.00 31.94 3.16
3700 4651 3.553095 AAGGGCCGAAGCAGGTGTC 62.553 63.158 0.00 0.00 42.56 3.67
3811 4762 7.449704 ACTCCTCTTTGCAGAAAACATCTTTAT 59.550 33.333 0.00 0.00 35.73 1.40
3819 4770 3.502595 GGGTACTCCTCTTTGCAGAAAAC 59.497 47.826 0.00 0.00 0.00 2.43
3901 4852 6.443934 TGCAGAACTTAAAAGTGTAGCAAA 57.556 33.333 11.52 0.00 39.66 3.68
3929 4880 7.417612 GTGCTTTCTTCAGTTTCTTTACATCA 58.582 34.615 0.00 0.00 0.00 3.07
3932 4883 5.353123 ACGTGCTTTCTTCAGTTTCTTTACA 59.647 36.000 0.00 0.00 0.00 2.41
3963 4914 4.939255 AGGGATGAGATTGAACCAACAAT 58.061 39.130 0.00 0.00 42.19 2.71
3964 4915 4.387026 AGGGATGAGATTGAACCAACAA 57.613 40.909 0.00 0.00 0.00 2.83
3965 4916 4.081406 CAAGGGATGAGATTGAACCAACA 58.919 43.478 0.00 0.00 0.00 3.33
4009 4960 0.662619 CGTGTCAGTTGCCAACATGT 59.337 50.000 10.69 0.00 0.00 3.21
4013 4964 0.814010 ACCTCGTGTCAGTTGCCAAC 60.814 55.000 0.00 0.00 0.00 3.77
4032 4983 3.129813 GCAAGTGGATGCAGATCAAATGA 59.870 43.478 0.00 0.00 45.70 2.57
4199 5150 1.282738 TGGATCATGTGCTGGTGATGT 59.717 47.619 0.00 0.00 35.33 3.06
4209 5160 1.092348 CACAGTGGCTGGATCATGTG 58.908 55.000 0.00 0.00 35.51 3.21
4299 5250 4.415150 CGGTGGCCCTCTGCACAT 62.415 66.667 0.00 0.00 43.89 3.21
4364 5318 1.375098 GCTGCTCTGGATGTCCAAGC 61.375 60.000 20.01 20.01 46.97 4.01
4369 5323 0.747283 CCAAGGCTGCTCTGGATGTC 60.747 60.000 13.20 0.00 0.00 3.06
4370 5324 1.302285 CCAAGGCTGCTCTGGATGT 59.698 57.895 13.20 0.00 0.00 3.06
4542 5496 1.407258 CCTCTGATCCGACTCCTTGTC 59.593 57.143 0.00 0.00 42.06 3.18
4546 5500 1.826054 CGCCTCTGATCCGACTCCT 60.826 63.158 0.00 0.00 0.00 3.69
4595 5549 0.608130 CGATCCTTCACTGTCCACCA 59.392 55.000 0.00 0.00 0.00 4.17
4646 5600 3.361786 AGAGTTTCTCTGCTCTAGGGAC 58.638 50.000 0.00 0.00 39.62 4.46
4669 5623 1.278985 TGCATCGTCATCTTGGAAGGT 59.721 47.619 0.00 0.00 0.00 3.50
4692 5646 1.140312 ACACCTCATGTCCAACCAGT 58.860 50.000 0.00 0.00 36.54 4.00
4693 5647 2.276732 AACACCTCATGTCCAACCAG 57.723 50.000 0.00 0.00 42.31 4.00
4694 5648 2.692557 CAAAACACCTCATGTCCAACCA 59.307 45.455 0.00 0.00 42.31 3.67
4695 5649 2.693074 ACAAAACACCTCATGTCCAACC 59.307 45.455 0.00 0.00 42.31 3.77
4699 5654 4.134563 ACTGTACAAAACACCTCATGTCC 58.865 43.478 0.00 0.00 42.31 4.02
4823 5790 4.479619 CAAAATGAGGCTTTGCTGTCTAC 58.520 43.478 0.00 0.00 0.00 2.59
4875 5842 0.171903 AACCGAGATAACCGTGGACG 59.828 55.000 0.00 0.00 39.44 4.79
4939 5906 5.989777 TCTTACAAGTAAGACCTGAAGCAAC 59.010 40.000 16.47 0.00 44.58 4.17
4968 5935 9.213777 CATATAAGGGGGCAGTAATAGATTAGA 57.786 37.037 0.00 0.00 0.00 2.10
5023 5990 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5024 5991 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5025 5992 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5026 5993 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5027 5994 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
5028 5995 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5029 5996 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5030 5997 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5031 5998 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
5032 5999 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
5033 6000 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
5034 6001 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
5035 6002 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
5036 6003 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
5040 6007 8.989980 GCTTAGTACAAAGTTGAGACACTTATT 58.010 33.333 0.00 0.00 35.87 1.40
5041 6008 8.368668 AGCTTAGTACAAAGTTGAGACACTTAT 58.631 33.333 0.00 0.00 35.87 1.73
5042 6009 7.723324 AGCTTAGTACAAAGTTGAGACACTTA 58.277 34.615 0.00 0.00 35.87 2.24
5043 6010 6.583562 AGCTTAGTACAAAGTTGAGACACTT 58.416 36.000 0.00 0.00 38.74 3.16
5044 6011 6.163135 AGCTTAGTACAAAGTTGAGACACT 57.837 37.500 0.00 0.00 0.00 3.55
5045 6012 5.983720 TGAGCTTAGTACAAAGTTGAGACAC 59.016 40.000 0.00 0.00 0.00 3.67
5046 6013 6.156748 TGAGCTTAGTACAAAGTTGAGACA 57.843 37.500 0.00 0.00 0.00 3.41
5047 6014 6.924060 TCTTGAGCTTAGTACAAAGTTGAGAC 59.076 38.462 0.00 0.00 0.00 3.36
5048 6015 6.924060 GTCTTGAGCTTAGTACAAAGTTGAGA 59.076 38.462 0.00 0.00 0.00 3.27
5049 6016 6.701841 TGTCTTGAGCTTAGTACAAAGTTGAG 59.298 38.462 0.00 0.00 0.00 3.02
5050 6017 6.578944 TGTCTTGAGCTTAGTACAAAGTTGA 58.421 36.000 0.00 0.00 0.00 3.18
5051 6018 6.844696 TGTCTTGAGCTTAGTACAAAGTTG 57.155 37.500 0.00 0.00 0.00 3.16
5052 6019 8.451908 AAATGTCTTGAGCTTAGTACAAAGTT 57.548 30.769 0.00 0.00 0.00 2.66
5053 6020 9.726438 ATAAATGTCTTGAGCTTAGTACAAAGT 57.274 29.630 0.00 0.00 0.00 2.66
5060 6027 9.959721 TCCTAAAATAAATGTCTTGAGCTTAGT 57.040 29.630 0.00 0.00 0.00 2.24
5062 6029 8.879759 CGTCCTAAAATAAATGTCTTGAGCTTA 58.120 33.333 0.00 0.00 0.00 3.09
5063 6030 7.148239 CCGTCCTAAAATAAATGTCTTGAGCTT 60.148 37.037 0.00 0.00 0.00 3.74
5064 6031 6.316390 CCGTCCTAAAATAAATGTCTTGAGCT 59.684 38.462 0.00 0.00 0.00 4.09
5065 6032 6.315393 TCCGTCCTAAAATAAATGTCTTGAGC 59.685 38.462 0.00 0.00 0.00 4.26
5066 6033 7.011482 CCTCCGTCCTAAAATAAATGTCTTGAG 59.989 40.741 0.00 0.00 0.00 3.02
5067 6034 6.821665 CCTCCGTCCTAAAATAAATGTCTTGA 59.178 38.462 0.00 0.00 0.00 3.02
5068 6035 6.038271 CCCTCCGTCCTAAAATAAATGTCTTG 59.962 42.308 0.00 0.00 0.00 3.02
5069 6036 6.069847 TCCCTCCGTCCTAAAATAAATGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
5070 6037 5.427481 TCCCTCCGTCCTAAAATAAATGTCT 59.573 40.000 0.00 0.00 0.00 3.41
5071 6038 5.677567 TCCCTCCGTCCTAAAATAAATGTC 58.322 41.667 0.00 0.00 0.00 3.06
5072 6039 5.191124 ACTCCCTCCGTCCTAAAATAAATGT 59.809 40.000 0.00 0.00 0.00 2.71
5073 6040 5.681639 ACTCCCTCCGTCCTAAAATAAATG 58.318 41.667 0.00 0.00 0.00 2.32
5074 6041 5.970501 ACTCCCTCCGTCCTAAAATAAAT 57.029 39.130 0.00 0.00 0.00 1.40
5075 6042 7.441903 AATACTCCCTCCGTCCTAAAATAAA 57.558 36.000 0.00 0.00 0.00 1.40
5076 6043 7.441903 AAATACTCCCTCCGTCCTAAAATAA 57.558 36.000 0.00 0.00 0.00 1.40
5077 6044 8.591072 CATAAATACTCCCTCCGTCCTAAAATA 58.409 37.037 0.00 0.00 0.00 1.40
5078 6045 5.970501 AAATACTCCCTCCGTCCTAAAAT 57.029 39.130 0.00 0.00 0.00 1.82
5079 6046 6.612456 TCATAAATACTCCCTCCGTCCTAAAA 59.388 38.462 0.00 0.00 0.00 1.52
5080 6047 6.138263 TCATAAATACTCCCTCCGTCCTAAA 58.862 40.000 0.00 0.00 0.00 1.85
5081 6048 5.708544 TCATAAATACTCCCTCCGTCCTAA 58.291 41.667 0.00 0.00 0.00 2.69
5082 6049 5.329191 TCATAAATACTCCCTCCGTCCTA 57.671 43.478 0.00 0.00 0.00 2.94
5083 6050 4.194678 TCATAAATACTCCCTCCGTCCT 57.805 45.455 0.00 0.00 0.00 3.85
5084 6051 4.100498 TGTTCATAAATACTCCCTCCGTCC 59.900 45.833 0.00 0.00 0.00 4.79
5085 6052 5.068723 TCTGTTCATAAATACTCCCTCCGTC 59.931 44.000 0.00 0.00 0.00 4.79
5086 6053 4.960469 TCTGTTCATAAATACTCCCTCCGT 59.040 41.667 0.00 0.00 0.00 4.69
5087 6054 5.509840 CCTCTGTTCATAAATACTCCCTCCG 60.510 48.000 0.00 0.00 0.00 4.63
5088 6055 5.221742 CCCTCTGTTCATAAATACTCCCTCC 60.222 48.000 0.00 0.00 0.00 4.30
5089 6056 5.367060 ACCCTCTGTTCATAAATACTCCCTC 59.633 44.000 0.00 0.00 0.00 4.30
5090 6057 5.131142 CACCCTCTGTTCATAAATACTCCCT 59.869 44.000 0.00 0.00 0.00 4.20
5091 6058 5.104485 ACACCCTCTGTTCATAAATACTCCC 60.104 44.000 0.00 0.00 0.00 4.30
5092 6059 5.990668 ACACCCTCTGTTCATAAATACTCC 58.009 41.667 0.00 0.00 0.00 3.85
5093 6060 7.783042 AGTACACCCTCTGTTCATAAATACTC 58.217 38.462 0.00 0.00 33.91 2.59
5094 6061 7.735326 AGTACACCCTCTGTTCATAAATACT 57.265 36.000 0.00 0.00 33.91 2.12
5095 6062 8.693625 ACTAGTACACCCTCTGTTCATAAATAC 58.306 37.037 0.00 0.00 33.91 1.89
5155 6716 2.755103 AGTTCCTCGGGCATTCAAAATC 59.245 45.455 0.00 0.00 0.00 2.17
5160 6721 1.377202 GCAGTTCCTCGGGCATTCA 60.377 57.895 0.00 0.00 0.00 2.57
5209 6770 2.232452 CTCCTCTGGTACTTCCTGTGTG 59.768 54.545 0.00 0.00 36.66 3.82
5222 6783 0.730265 CTTCGTCTCGTCTCCTCTGG 59.270 60.000 0.00 0.00 0.00 3.86
5253 6814 2.800544 CAGTGTGTTTTCTACCTCACGG 59.199 50.000 0.00 0.00 36.43 4.94
5335 6896 6.801539 TTCGTCACTTGAGAAATAGCAAAT 57.198 33.333 0.00 0.00 0.00 2.32
5357 7269 5.723295 ACGGATTGATTGCAAGCTAAATTT 58.277 33.333 16.73 0.00 40.18 1.82
5375 7287 1.153568 CACACAGGCATCGACGGAT 60.154 57.895 0.00 0.00 0.00 4.18
5381 7293 1.915614 GCTTCACCACACAGGCATCG 61.916 60.000 0.00 0.00 43.14 3.84
5429 7341 1.945394 ACGACATGTAGCCCTACGTAG 59.055 52.381 15.92 15.92 38.85 3.51
5430 7342 1.942657 GACGACATGTAGCCCTACGTA 59.057 52.381 5.81 0.00 38.85 3.57
5431 7343 0.737219 GACGACATGTAGCCCTACGT 59.263 55.000 5.81 6.04 38.85 3.57
5432 7344 1.002684 GAGACGACATGTAGCCCTACG 60.003 57.143 5.81 2.60 38.85 3.51
5433 7345 1.337387 GGAGACGACATGTAGCCCTAC 59.663 57.143 5.81 1.00 36.63 3.18
5434 7346 1.064240 TGGAGACGACATGTAGCCCTA 60.064 52.381 5.81 0.00 0.00 3.53
5435 7347 0.324368 TGGAGACGACATGTAGCCCT 60.324 55.000 5.81 3.68 0.00 5.19
5436 7348 0.103208 CTGGAGACGACATGTAGCCC 59.897 60.000 5.81 5.88 0.00 5.19
5437 7349 0.103208 CCTGGAGACGACATGTAGCC 59.897 60.000 5.81 0.24 0.00 3.93
5438 7350 0.103208 CCCTGGAGACGACATGTAGC 59.897 60.000 5.81 0.00 0.00 3.58
5439 7351 1.405821 GACCCTGGAGACGACATGTAG 59.594 57.143 0.00 0.00 0.00 2.74
5440 7352 1.272258 TGACCCTGGAGACGACATGTA 60.272 52.381 0.00 0.00 0.00 2.29
5441 7353 0.541998 TGACCCTGGAGACGACATGT 60.542 55.000 0.00 0.00 0.00 3.21
5442 7354 0.608130 TTGACCCTGGAGACGACATG 59.392 55.000 0.00 0.00 0.00 3.21
5443 7355 0.608640 GTTGACCCTGGAGACGACAT 59.391 55.000 0.00 0.00 0.00 3.06
5444 7356 0.469331 AGTTGACCCTGGAGACGACA 60.469 55.000 0.00 0.00 0.00 4.35
5445 7357 1.201880 GTAGTTGACCCTGGAGACGAC 59.798 57.143 0.00 0.00 0.00 4.34
5446 7358 1.542492 GTAGTTGACCCTGGAGACGA 58.458 55.000 0.00 0.00 0.00 4.20
5447 7359 0.531200 GGTAGTTGACCCTGGAGACG 59.469 60.000 0.00 0.00 43.25 4.18
5448 7360 0.531200 CGGTAGTTGACCCTGGAGAC 59.469 60.000 0.00 0.00 46.81 3.36
5449 7361 1.255667 GCGGTAGTTGACCCTGGAGA 61.256 60.000 0.00 0.00 46.81 3.71
5450 7362 1.218316 GCGGTAGTTGACCCTGGAG 59.782 63.158 0.00 0.00 46.81 3.86
5451 7363 1.122632 TTGCGGTAGTTGACCCTGGA 61.123 55.000 0.00 0.00 46.81 3.86
5452 7364 0.953960 GTTGCGGTAGTTGACCCTGG 60.954 60.000 0.00 0.00 46.81 4.45
5453 7365 0.953960 GGTTGCGGTAGTTGACCCTG 60.954 60.000 0.00 0.00 46.81 4.45
5454 7366 1.373812 GGTTGCGGTAGTTGACCCT 59.626 57.895 0.00 0.00 46.81 4.34
5455 7367 1.673337 GGGTTGCGGTAGTTGACCC 60.673 63.158 0.00 0.00 46.81 4.46
5456 7368 0.609662 TAGGGTTGCGGTAGTTGACC 59.390 55.000 0.00 0.00 45.91 4.02
5457 7369 1.718396 GTAGGGTTGCGGTAGTTGAC 58.282 55.000 0.00 0.00 0.00 3.18
5458 7370 0.244450 CGTAGGGTTGCGGTAGTTGA 59.756 55.000 0.00 0.00 0.00 3.18
5459 7371 0.037975 ACGTAGGGTTGCGGTAGTTG 60.038 55.000 0.00 0.00 36.68 3.16
5460 7372 1.474077 CTACGTAGGGTTGCGGTAGTT 59.526 52.381 15.07 0.00 36.68 2.24
5461 7373 1.098050 CTACGTAGGGTTGCGGTAGT 58.902 55.000 15.07 0.00 36.68 2.73
5462 7374 1.382522 TCTACGTAGGGTTGCGGTAG 58.617 55.000 22.01 0.00 36.68 3.18
5463 7375 1.832883 TTCTACGTAGGGTTGCGGTA 58.167 50.000 22.01 0.00 36.68 4.02
5464 7376 1.188863 ATTCTACGTAGGGTTGCGGT 58.811 50.000 22.01 0.00 36.68 5.68
5465 7377 2.304751 AATTCTACGTAGGGTTGCGG 57.695 50.000 22.01 0.00 36.68 5.69
5466 7378 3.181514 CCAAAATTCTACGTAGGGTTGCG 60.182 47.826 22.01 11.13 38.46 4.85
5467 7379 3.128068 CCCAAAATTCTACGTAGGGTTGC 59.872 47.826 22.01 0.00 0.00 4.17
5468 7380 3.692593 CCCCAAAATTCTACGTAGGGTTG 59.307 47.826 22.01 18.01 32.90 3.77
5469 7381 3.308617 CCCCCAAAATTCTACGTAGGGTT 60.309 47.826 22.01 13.84 32.90 4.11
5470 7382 2.240414 CCCCCAAAATTCTACGTAGGGT 59.760 50.000 22.01 8.61 32.90 4.34
5471 7383 2.240414 ACCCCCAAAATTCTACGTAGGG 59.760 50.000 22.01 14.84 38.04 3.53
5472 7384 3.275999 CACCCCCAAAATTCTACGTAGG 58.724 50.000 22.01 5.31 0.00 3.18
5473 7385 2.681344 GCACCCCCAAAATTCTACGTAG 59.319 50.000 16.73 16.73 0.00 3.51
5474 7386 2.713877 GCACCCCCAAAATTCTACGTA 58.286 47.619 0.00 0.00 0.00 3.57
5475 7387 1.541379 GCACCCCCAAAATTCTACGT 58.459 50.000 0.00 0.00 0.00 3.57
5476 7388 0.450184 CGCACCCCCAAAATTCTACG 59.550 55.000 0.00 0.00 0.00 3.51
5477 7389 0.815095 CCGCACCCCCAAAATTCTAC 59.185 55.000 0.00 0.00 0.00 2.59
5478 7390 0.406361 ACCGCACCCCCAAAATTCTA 59.594 50.000 0.00 0.00 0.00 2.10
5479 7391 0.406361 TACCGCACCCCCAAAATTCT 59.594 50.000 0.00 0.00 0.00 2.40
5480 7392 1.258676 TTACCGCACCCCCAAAATTC 58.741 50.000 0.00 0.00 0.00 2.17
5481 7393 1.945580 ATTACCGCACCCCCAAAATT 58.054 45.000 0.00 0.00 0.00 1.82
5482 7394 1.552792 CAATTACCGCACCCCCAAAAT 59.447 47.619 0.00 0.00 0.00 1.82
5483 7395 0.969894 CAATTACCGCACCCCCAAAA 59.030 50.000 0.00 0.00 0.00 2.44
5484 7396 0.112606 TCAATTACCGCACCCCCAAA 59.887 50.000 0.00 0.00 0.00 3.28
5485 7397 0.609681 GTCAATTACCGCACCCCCAA 60.610 55.000 0.00 0.00 0.00 4.12
5486 7398 1.001887 GTCAATTACCGCACCCCCA 60.002 57.895 0.00 0.00 0.00 4.96
5487 7399 1.751544 GGTCAATTACCGCACCCCC 60.752 63.158 0.00 0.00 38.88 5.40
5488 7400 3.914094 GGTCAATTACCGCACCCC 58.086 61.111 0.00 0.00 38.88 4.95
5496 7408 0.463833 CCGCCTCCAGGGTCAATTAC 60.464 60.000 0.00 0.00 37.43 1.89
5497 7409 0.619255 TCCGCCTCCAGGGTCAATTA 60.619 55.000 0.00 0.00 37.43 1.40
5498 7410 1.923395 TCCGCCTCCAGGGTCAATT 60.923 57.895 0.00 0.00 37.43 2.32
5499 7411 2.285368 TCCGCCTCCAGGGTCAAT 60.285 61.111 0.00 0.00 37.43 2.57
5500 7412 3.319198 GTCCGCCTCCAGGGTCAA 61.319 66.667 0.00 0.00 37.43 3.18
5522 7434 4.896829 TCTCGGCGGCCCTCTAGG 62.897 72.222 14.55 0.00 39.47 3.02
5523 7435 3.597728 GTCTCGGCGGCCCTCTAG 61.598 72.222 14.55 6.23 0.00 2.43
5524 7436 4.435970 TGTCTCGGCGGCCCTCTA 62.436 66.667 14.55 0.00 0.00 2.43
5527 7439 4.753662 TACTGTCTCGGCGGCCCT 62.754 66.667 14.55 0.00 0.00 5.19
5528 7440 4.208686 CTACTGTCTCGGCGGCCC 62.209 72.222 14.55 0.00 0.00 5.80
5529 7441 3.127352 CTCTACTGTCTCGGCGGCC 62.127 68.421 9.54 9.54 0.00 6.13
5530 7442 1.654954 TTCTCTACTGTCTCGGCGGC 61.655 60.000 7.21 0.00 0.00 6.53
5531 7443 0.378962 CTTCTCTACTGTCTCGGCGG 59.621 60.000 7.21 0.00 0.00 6.13
5532 7444 0.378962 CCTTCTCTACTGTCTCGGCG 59.621 60.000 0.00 0.00 0.00 6.46
5533 7445 0.101579 GCCTTCTCTACTGTCTCGGC 59.898 60.000 0.00 0.00 0.00 5.54
5534 7446 1.464734 TGCCTTCTCTACTGTCTCGG 58.535 55.000 0.00 0.00 0.00 4.63
5535 7447 2.490115 AGTTGCCTTCTCTACTGTCTCG 59.510 50.000 0.00 0.00 0.00 4.04
5536 7448 3.426963 CGAGTTGCCTTCTCTACTGTCTC 60.427 52.174 0.00 0.00 0.00 3.36
5537 7449 2.490115 CGAGTTGCCTTCTCTACTGTCT 59.510 50.000 0.00 0.00 0.00 3.41
5538 7450 2.488545 TCGAGTTGCCTTCTCTACTGTC 59.511 50.000 0.00 0.00 0.00 3.51
5539 7451 2.490115 CTCGAGTTGCCTTCTCTACTGT 59.510 50.000 3.62 0.00 0.00 3.55
5540 7452 2.733858 GCTCGAGTTGCCTTCTCTACTG 60.734 54.545 15.13 0.00 0.00 2.74
5541 7453 1.474879 GCTCGAGTTGCCTTCTCTACT 59.525 52.381 15.13 0.00 0.00 2.57
5542 7454 1.202582 TGCTCGAGTTGCCTTCTCTAC 59.797 52.381 15.13 0.00 0.00 2.59
5543 7455 1.545841 TGCTCGAGTTGCCTTCTCTA 58.454 50.000 15.13 0.00 0.00 2.43
5544 7456 0.681733 TTGCTCGAGTTGCCTTCTCT 59.318 50.000 15.13 0.00 0.00 3.10
5545 7457 1.074752 CTTGCTCGAGTTGCCTTCTC 58.925 55.000 15.13 0.00 0.00 2.87
5546 7458 0.681733 TCTTGCTCGAGTTGCCTTCT 59.318 50.000 15.13 0.00 0.00 2.85
5547 7459 1.396301 CATCTTGCTCGAGTTGCCTTC 59.604 52.381 15.13 0.00 0.00 3.46
5548 7460 1.002430 TCATCTTGCTCGAGTTGCCTT 59.998 47.619 15.13 0.00 0.00 4.35
5549 7461 0.610174 TCATCTTGCTCGAGTTGCCT 59.390 50.000 15.13 0.00 0.00 4.75
5550 7462 1.005340 CTCATCTTGCTCGAGTTGCC 58.995 55.000 15.13 0.00 0.00 4.52
5551 7463 0.373024 GCTCATCTTGCTCGAGTTGC 59.627 55.000 15.13 0.48 0.00 4.17
5552 7464 1.005340 GGCTCATCTTGCTCGAGTTG 58.995 55.000 15.13 4.77 0.00 3.16
5553 7465 0.459237 CGGCTCATCTTGCTCGAGTT 60.459 55.000 15.13 0.00 0.00 3.01
5554 7466 1.140589 CGGCTCATCTTGCTCGAGT 59.859 57.895 15.13 0.00 0.00 4.18
5555 7467 1.140589 ACGGCTCATCTTGCTCGAG 59.859 57.895 8.45 8.45 0.00 4.04
5556 7468 1.153765 CACGGCTCATCTTGCTCGA 60.154 57.895 0.00 0.00 0.00 4.04
5557 7469 2.806856 GCACGGCTCATCTTGCTCG 61.807 63.158 0.00 0.00 32.00 5.03
5558 7470 2.806856 CGCACGGCTCATCTTGCTC 61.807 63.158 0.00 0.00 32.56 4.26
5559 7471 2.816958 CGCACGGCTCATCTTGCT 60.817 61.111 0.00 0.00 32.56 3.91
5560 7472 2.806856 CTCGCACGGCTCATCTTGC 61.807 63.158 0.00 0.00 0.00 4.01
5561 7473 2.806856 GCTCGCACGGCTCATCTTG 61.807 63.158 0.00 0.00 0.00 3.02
5562 7474 2.510238 GCTCGCACGGCTCATCTT 60.510 61.111 0.00 0.00 0.00 2.40
5563 7475 4.521062 GGCTCGCACGGCTCATCT 62.521 66.667 0.00 0.00 0.00 2.90
5576 7488 3.423154 CTTTGTGACCCGCGGCTC 61.423 66.667 22.85 17.84 0.00 4.70
5577 7489 3.254024 ATCTTTGTGACCCGCGGCT 62.254 57.895 22.85 5.96 0.00 5.52
5578 7490 2.746277 ATCTTTGTGACCCGCGGC 60.746 61.111 22.85 7.92 0.00 6.53
5579 7491 1.361668 CTGATCTTTGTGACCCGCGG 61.362 60.000 21.04 21.04 0.00 6.46
5580 7492 0.670546 ACTGATCTTTGTGACCCGCG 60.671 55.000 0.00 0.00 0.00 6.46
5581 7493 0.798776 CACTGATCTTTGTGACCCGC 59.201 55.000 7.86 0.00 36.38 6.13
5582 7494 1.270839 ACCACTGATCTTTGTGACCCG 60.271 52.381 13.06 2.79 36.38 5.28
5583 7495 2.568623 ACCACTGATCTTTGTGACCC 57.431 50.000 13.06 0.00 36.38 4.46
5584 7496 4.142600 GCATAACCACTGATCTTTGTGACC 60.143 45.833 13.06 0.00 36.38 4.02
5585 7497 4.974591 GCATAACCACTGATCTTTGTGAC 58.025 43.478 13.06 0.00 36.38 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.