Multiple sequence alignment - TraesCS5B01G254800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G254800 chr5B 100.000 2851 0 0 1 2851 437564346 437561496 0.000000e+00 5265.0
1 TraesCS5B01G254800 chr5B 84.263 502 70 8 2354 2851 466616972 466617468 5.520000e-132 481.0
2 TraesCS5B01G254800 chr5B 85.000 220 21 7 1921 2132 437555532 437555317 2.230000e-51 213.0
3 TraesCS5B01G254800 chr5D 90.713 1669 98 27 486 2132 369066296 369064663 0.000000e+00 2170.0
4 TraesCS5B01G254800 chr5D 89.530 468 43 5 10 475 369066874 369066411 3.160000e-164 588.0
5 TraesCS5B01G254800 chr5D 84.821 224 31 3 2133 2356 415721845 415722065 3.700000e-54 222.0
6 TraesCS5B01G254800 chr5A 87.629 1835 125 47 354 2137 471467911 471466128 0.000000e+00 2037.0
7 TraesCS5B01G254800 chr5A 89.730 370 31 5 1 368 471468639 471468275 1.550000e-127 466.0
8 TraesCS5B01G254800 chr5A 93.333 225 15 0 2133 2357 487326446 487326670 1.640000e-87 333.0
9 TraesCS5B01G254800 chr6B 98.580 493 7 0 2359 2851 599407715 599407223 0.000000e+00 872.0
10 TraesCS5B01G254800 chr6B 91.150 226 18 2 2133 2357 75939917 75939693 3.570000e-79 305.0
11 TraesCS5B01G254800 chr6B 79.293 396 50 22 1523 1908 667895403 667895776 6.100000e-62 248.0
12 TraesCS5B01G254800 chr1B 98.193 498 8 1 2354 2851 603384484 603384980 0.000000e+00 869.0
13 TraesCS5B01G254800 chr4A 96.964 494 13 2 2358 2851 711346459 711345968 0.000000e+00 828.0
14 TraesCS5B01G254800 chr7A 93.725 494 30 1 2358 2851 336694985 336695477 0.000000e+00 739.0
15 TraesCS5B01G254800 chr2A 87.751 498 60 1 2354 2851 473383558 473384054 5.290000e-162 580.0
16 TraesCS5B01G254800 chr2A 87.349 498 62 1 2354 2851 473403083 473403579 1.150000e-158 569.0
17 TraesCS5B01G254800 chr1A 87.045 494 64 0 2358 2851 14433977 14433484 2.480000e-155 558.0
18 TraesCS5B01G254800 chr3D 86.427 501 67 1 2352 2851 129467949 129467449 5.370000e-152 547.0
19 TraesCS5B01G254800 chr6D 94.248 226 12 1 2133 2357 36227746 36227521 7.560000e-91 344.0
20 TraesCS5B01G254800 chr6D 82.153 353 33 14 1517 1851 441894979 441895319 2.800000e-70 276.0
21 TraesCS5B01G254800 chr6D 80.899 89 14 3 2051 2137 112913145 112913058 1.830000e-07 67.6
22 TraesCS5B01G254800 chr6A 92.444 225 16 1 2133 2357 40224686 40224463 1.270000e-83 320.0
23 TraesCS5B01G254800 chr6A 86.404 228 27 3 2132 2356 600896684 600896458 2.190000e-61 246.0
24 TraesCS5B01G254800 chr6A 89.474 171 18 0 1523 1693 591263103 591263273 1.720000e-52 217.0
25 TraesCS5B01G254800 chr6A 80.108 186 18 12 1733 1908 591263561 591263737 1.390000e-23 121.0
26 TraesCS5B01G254800 chr2B 96.471 85 2 1 2274 2357 22727617 22727701 3.830000e-29 139.0
27 TraesCS5B01G254800 chr3A 81.176 85 12 2 2051 2133 427105877 427105959 6.590000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G254800 chr5B 437561496 437564346 2850 True 5265.0 5265 100.0000 1 2851 1 chr5B.!!$R2 2850
1 TraesCS5B01G254800 chr5D 369064663 369066874 2211 True 1379.0 2170 90.1215 10 2132 2 chr5D.!!$R1 2122
2 TraesCS5B01G254800 chr5A 471466128 471468639 2511 True 1251.5 2037 88.6795 1 2137 2 chr5A.!!$R1 2136
3 TraesCS5B01G254800 chr3D 129467449 129467949 500 True 547.0 547 86.4270 2352 2851 1 chr3D.!!$R1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 1393 0.382158 CTCACTCCATCGCGCTCTAA 59.618 55.0 5.56 0.0 0.0 2.10 F
1196 1706 0.251832 GAGGAGTGTGGAGGAGGACA 60.252 60.0 0.00 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 2279 0.035152 TGAACTCCGGCATTGCTCAT 60.035 50.0 8.82 0.00 0.00 2.90 R
2444 2992 0.106769 TGTATCGTGGGCATGCCATT 60.107 50.0 36.56 18.24 37.98 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 187 3.134081 GGAGATTGAAACCCCGATCTACA 59.866 47.826 0.00 0.00 37.68 2.74
288 291 8.190326 TCTATGACTAAGTCAGACTTTTTCCA 57.810 34.615 21.05 13.64 46.04 3.53
385 766 6.767524 TGGTGACTTGTTTCAAGTTTGTAT 57.232 33.333 14.82 0.00 0.00 2.29
394 775 9.233232 CTTGTTTCAAGTTTGTATGTACCTTTC 57.767 33.333 1.84 0.00 0.00 2.62
402 783 9.961265 AAGTTTGTATGTACCTTTCTTTTAAGC 57.039 29.630 0.00 0.00 0.00 3.09
404 785 9.608617 GTTTGTATGTACCTTTCTTTTAAGCTC 57.391 33.333 0.00 0.00 0.00 4.09
407 788 9.216117 TGTATGTACCTTTCTTTTAAGCTCTTC 57.784 33.333 0.00 0.00 0.00 2.87
408 789 7.689446 ATGTACCTTTCTTTTAAGCTCTTCC 57.311 36.000 0.00 0.00 0.00 3.46
442 823 6.039616 GGAACATTTGTTTCAAGCTTGTACA 58.960 36.000 25.19 24.29 38.56 2.90
448 829 5.940192 TGTTTCAAGCTTGTACATACCTG 57.060 39.130 25.19 0.00 0.00 4.00
468 849 4.277672 CCTGTTGATGCATAGCTAGCAATT 59.722 41.667 18.83 0.00 46.27 2.32
469 850 5.221185 CCTGTTGATGCATAGCTAGCAATTT 60.221 40.000 18.83 0.00 46.27 1.82
478 859 7.780064 TGCATAGCTAGCAATTTTAAATTCCA 58.220 30.769 18.83 0.00 39.39 3.53
533 1027 6.745907 CACATTTCATTAGCATGACAGTTCAG 59.254 38.462 0.00 0.00 39.28 3.02
578 1075 7.982371 ACATACTTTAGTAGTACGTCAATGC 57.018 36.000 0.00 0.00 41.99 3.56
579 1076 6.976925 ACATACTTTAGTAGTACGTCAATGCC 59.023 38.462 0.00 0.00 41.99 4.40
593 1090 2.500392 AATGCCAAGCCAAATGCATT 57.500 40.000 5.99 5.99 46.47 3.56
602 1099 2.070783 GCCAAATGCATTGTGAACCTG 58.929 47.619 13.82 5.37 40.77 4.00
618 1115 1.597854 CTGTTGCTTGTGGCTCCGA 60.598 57.895 0.00 0.00 42.39 4.55
699 1200 1.743995 GGCCGACCACGCTAAACAT 60.744 57.895 0.00 0.00 38.29 2.71
768 1269 2.216488 CCACGAAGCAATTCTATCGACG 59.784 50.000 9.50 0.00 38.59 5.12
786 1287 3.528532 GACGGAAACCCACGATTATTCT 58.471 45.455 0.00 0.00 0.00 2.40
798 1299 4.049186 ACGATTATTCTTTAGCATCGCGT 58.951 39.130 5.77 0.00 40.31 6.01
799 1300 5.116528 CACGATTATTCTTTAGCATCGCGTA 59.883 40.000 5.77 0.00 40.31 4.42
884 1385 0.742281 CAACCCAGCTCACTCCATCG 60.742 60.000 0.00 0.00 0.00 3.84
892 1393 0.382158 CTCACTCCATCGCGCTCTAA 59.618 55.000 5.56 0.00 0.00 2.10
928 1429 5.105228 ACCCATGATAAAGAAACCAATGCAG 60.105 40.000 0.00 0.00 0.00 4.41
948 1449 4.305769 CAGATTAGCAGGAGCAGTATCAC 58.694 47.826 0.00 0.00 45.49 3.06
966 1467 1.395954 CACACAAGCACATCCTGATCG 59.604 52.381 0.00 0.00 0.00 3.69
973 1474 2.697229 AGCACATCCTGATCGATCTGAA 59.303 45.455 27.99 13.34 0.00 3.02
976 1477 4.261783 GCACATCCTGATCGATCTGAACTA 60.262 45.833 27.99 13.84 0.00 2.24
981 1482 4.576873 TCCTGATCGATCTGAACTACTCAC 59.423 45.833 27.99 0.00 0.00 3.51
1038 1542 4.069232 CTGCAGCGGAGGACGGAA 62.069 66.667 0.00 0.00 44.51 4.30
1119 1623 4.143333 CGGCCGTCGAACCCAGAT 62.143 66.667 19.50 0.00 42.43 2.90
1183 1693 0.980231 GAGACATGGCAGGGAGGAGT 60.980 60.000 0.00 0.00 0.00 3.85
1192 1702 0.975040 CAGGGAGGAGTGTGGAGGAG 60.975 65.000 0.00 0.00 0.00 3.69
1194 1704 1.388531 GGAGGAGTGTGGAGGAGGA 59.611 63.158 0.00 0.00 0.00 3.71
1195 1705 0.973496 GGAGGAGTGTGGAGGAGGAC 60.973 65.000 0.00 0.00 0.00 3.85
1196 1706 0.251832 GAGGAGTGTGGAGGAGGACA 60.252 60.000 0.00 0.00 0.00 4.02
1724 2261 2.683867 GAGTAAGCTTAGCTCGACAGGA 59.316 50.000 7.36 0.00 38.25 3.86
1725 2262 2.685897 AGTAAGCTTAGCTCGACAGGAG 59.314 50.000 7.36 0.00 46.06 3.69
1740 2279 5.766670 TCGACAGGAGTAGTTAGTTTCTTCA 59.233 40.000 0.00 0.00 0.00 3.02
1749 2288 8.261492 AGTAGTTAGTTTCTTCATGAGCAATG 57.739 34.615 0.00 0.00 37.66 2.82
1751 2290 3.863142 AGTTTCTTCATGAGCAATGCC 57.137 42.857 0.00 0.00 36.11 4.40
1971 2510 9.394477 CGAATATATCAATGTTCTAGTGTCGAA 57.606 33.333 0.00 0.00 32.60 3.71
1993 2532 3.756117 AGATTGTTTGGAGGTCTTCACC 58.244 45.455 0.00 0.00 44.19 4.02
2041 2583 2.947938 AATTGATGAGAGGGCGCGGG 62.948 60.000 8.83 0.00 0.00 6.13
2043 2585 4.593864 GATGAGAGGGCGCGGGTC 62.594 72.222 8.83 0.00 0.00 4.46
2061 2609 1.490490 GTCCTGATGGGCCATCTAACA 59.510 52.381 38.44 23.05 41.06 2.41
2069 2617 1.115326 GGCCATCTAACAATGCCCCC 61.115 60.000 0.00 0.00 0.00 5.40
2078 2626 2.159179 ACAATGCCCCCTAATTGTCC 57.841 50.000 0.00 0.00 41.96 4.02
2080 2628 0.755327 AATGCCCCCTAATTGTCCGC 60.755 55.000 0.00 0.00 0.00 5.54
2083 2631 0.109723 GCCCCCTAATTGTCCGCATA 59.890 55.000 0.00 0.00 0.00 3.14
2089 2637 5.508994 CCCCCTAATTGTCCGCATATTTTTC 60.509 44.000 0.00 0.00 0.00 2.29
2099 2647 8.062065 TGTCCGCATATTTTTCCTTCTAATTT 57.938 30.769 0.00 0.00 0.00 1.82
2117 2665 8.722342 TCTAATTTCGCAACACTCAAAATAAC 57.278 30.769 0.00 0.00 0.00 1.89
2151 2699 9.449719 AATAACACACTTTAGCTATTAGCAAGT 57.550 29.630 17.59 15.03 45.56 3.16
2152 2700 6.969828 ACACACTTTAGCTATTAGCAAGTC 57.030 37.500 17.59 0.00 45.56 3.01
2153 2701 5.577164 ACACACTTTAGCTATTAGCAAGTCG 59.423 40.000 17.59 13.14 45.56 4.18
2154 2702 4.567159 ACACTTTAGCTATTAGCAAGTCGC 59.433 41.667 17.59 0.00 45.56 5.19
2155 2703 4.025647 CACTTTAGCTATTAGCAAGTCGCC 60.026 45.833 17.59 0.00 45.56 5.54
2156 2704 4.141914 ACTTTAGCTATTAGCAAGTCGCCT 60.142 41.667 17.59 0.00 45.56 5.52
2157 2705 2.231215 AGCTATTAGCAAGTCGCCTG 57.769 50.000 17.59 0.00 45.56 4.85
2158 2706 1.757118 AGCTATTAGCAAGTCGCCTGA 59.243 47.619 17.59 0.00 45.56 3.86
2159 2707 2.168521 AGCTATTAGCAAGTCGCCTGAA 59.831 45.455 17.59 0.00 45.56 3.02
2160 2708 2.936498 GCTATTAGCAAGTCGCCTGAAA 59.064 45.455 10.83 0.00 44.04 2.69
2161 2709 3.374058 GCTATTAGCAAGTCGCCTGAAAA 59.626 43.478 10.83 0.00 44.04 2.29
2162 2710 4.035675 GCTATTAGCAAGTCGCCTGAAAAT 59.964 41.667 10.83 0.00 44.04 1.82
2163 2711 5.449177 GCTATTAGCAAGTCGCCTGAAAATT 60.449 40.000 10.83 0.00 44.04 1.82
2164 2712 6.238374 GCTATTAGCAAGTCGCCTGAAAATTA 60.238 38.462 10.83 0.00 44.04 1.40
2165 2713 3.831715 AGCAAGTCGCCTGAAAATTAC 57.168 42.857 0.00 0.00 44.04 1.89
2166 2714 3.412386 AGCAAGTCGCCTGAAAATTACT 58.588 40.909 0.00 0.00 44.04 2.24
2167 2715 3.821033 AGCAAGTCGCCTGAAAATTACTT 59.179 39.130 0.00 0.00 44.04 2.24
2168 2716 4.278419 AGCAAGTCGCCTGAAAATTACTTT 59.722 37.500 0.00 0.00 44.04 2.66
2169 2717 4.982295 GCAAGTCGCCTGAAAATTACTTTT 59.018 37.500 0.00 0.00 34.05 2.27
2170 2718 5.107875 GCAAGTCGCCTGAAAATTACTTTTG 60.108 40.000 0.00 0.00 32.48 2.44
2171 2719 5.121221 AGTCGCCTGAAAATTACTTTTGG 57.879 39.130 0.00 0.00 34.73 3.28
2172 2720 3.673338 GTCGCCTGAAAATTACTTTTGGC 59.327 43.478 8.69 8.69 40.55 4.52
2173 2721 3.572255 TCGCCTGAAAATTACTTTTGGCT 59.428 39.130 14.01 0.00 41.19 4.75
2174 2722 3.920412 CGCCTGAAAATTACTTTTGGCTC 59.080 43.478 14.01 0.00 41.19 4.70
2175 2723 4.558496 CGCCTGAAAATTACTTTTGGCTCA 60.558 41.667 14.01 0.03 41.19 4.26
2176 2724 4.925646 GCCTGAAAATTACTTTTGGCTCAG 59.074 41.667 10.60 5.61 40.67 3.35
2177 2725 5.509670 GCCTGAAAATTACTTTTGGCTCAGT 60.510 40.000 10.60 0.00 40.67 3.41
2178 2726 6.152379 CCTGAAAATTACTTTTGGCTCAGTC 58.848 40.000 0.00 0.00 34.73 3.51
2179 2727 6.239008 CCTGAAAATTACTTTTGGCTCAGTCA 60.239 38.462 0.00 0.00 34.73 3.41
2180 2728 7.106439 TGAAAATTACTTTTGGCTCAGTCAA 57.894 32.000 0.00 0.00 34.73 3.18
2181 2729 7.725251 TGAAAATTACTTTTGGCTCAGTCAAT 58.275 30.769 0.00 0.00 34.73 2.57
2182 2730 8.203485 TGAAAATTACTTTTGGCTCAGTCAATT 58.797 29.630 0.00 0.00 34.73 2.32
2183 2731 8.962884 AAAATTACTTTTGGCTCAGTCAATTT 57.037 26.923 0.00 0.00 33.33 1.82
2184 2732 8.962884 AAATTACTTTTGGCTCAGTCAATTTT 57.037 26.923 0.00 0.00 0.00 1.82
2185 2733 8.962884 AATTACTTTTGGCTCAGTCAATTTTT 57.037 26.923 0.00 0.00 0.00 1.94
2187 2735 9.696917 ATTACTTTTGGCTCAGTCAATTTTTAG 57.303 29.630 0.00 0.00 0.00 1.85
2188 2736 7.346751 ACTTTTGGCTCAGTCAATTTTTAGA 57.653 32.000 0.00 0.00 0.00 2.10
2189 2737 7.428826 ACTTTTGGCTCAGTCAATTTTTAGAG 58.571 34.615 0.00 0.00 0.00 2.43
2190 2738 6.959639 TTTGGCTCAGTCAATTTTTAGAGT 57.040 33.333 0.00 0.00 0.00 3.24
2191 2739 5.947228 TGGCTCAGTCAATTTTTAGAGTG 57.053 39.130 0.00 0.00 36.71 3.51
2192 2740 5.376625 TGGCTCAGTCAATTTTTAGAGTGT 58.623 37.500 0.00 0.00 36.73 3.55
2193 2741 5.827797 TGGCTCAGTCAATTTTTAGAGTGTT 59.172 36.000 0.00 0.00 36.73 3.32
2194 2742 6.145535 GGCTCAGTCAATTTTTAGAGTGTTG 58.854 40.000 0.00 0.00 36.73 3.33
2195 2743 6.017109 GGCTCAGTCAATTTTTAGAGTGTTGA 60.017 38.462 0.00 0.00 36.73 3.18
2196 2744 7.417612 GCTCAGTCAATTTTTAGAGTGTTGAA 58.582 34.615 0.00 0.00 36.73 2.69
2197 2745 8.078596 GCTCAGTCAATTTTTAGAGTGTTGAAT 58.921 33.333 0.00 0.00 36.73 2.57
2198 2746 9.956720 CTCAGTCAATTTTTAGAGTGTTGAATT 57.043 29.630 0.00 0.00 36.73 2.17
2199 2747 9.950680 TCAGTCAATTTTTAGAGTGTTGAATTC 57.049 29.630 0.00 0.00 36.73 2.17
2200 2748 9.956720 CAGTCAATTTTTAGAGTGTTGAATTCT 57.043 29.630 7.05 0.00 31.38 2.40
2211 2759 8.770438 AGAGTGTTGAATTCTACTTCAGATTC 57.230 34.615 18.63 6.64 36.55 2.52
2212 2760 7.543868 AGAGTGTTGAATTCTACTTCAGATTCG 59.456 37.037 18.63 0.00 36.55 3.34
2213 2761 7.155328 AGTGTTGAATTCTACTTCAGATTCGT 58.845 34.615 18.63 0.00 36.55 3.85
2214 2762 7.116948 AGTGTTGAATTCTACTTCAGATTCGTG 59.883 37.037 18.63 0.00 36.55 4.35
2215 2763 6.128553 TGTTGAATTCTACTTCAGATTCGTGC 60.129 38.462 18.63 0.00 36.55 5.34
2216 2764 5.724328 TGAATTCTACTTCAGATTCGTGCT 58.276 37.500 7.05 0.00 31.77 4.40
2217 2765 6.863275 TGAATTCTACTTCAGATTCGTGCTA 58.137 36.000 7.05 0.00 31.77 3.49
2218 2766 7.320399 TGAATTCTACTTCAGATTCGTGCTAA 58.680 34.615 7.05 0.00 31.77 3.09
2219 2767 7.981789 TGAATTCTACTTCAGATTCGTGCTAAT 59.018 33.333 7.05 0.00 31.77 1.73
2220 2768 9.464714 GAATTCTACTTCAGATTCGTGCTAATA 57.535 33.333 0.00 0.00 31.77 0.98
2221 2769 9.988815 AATTCTACTTCAGATTCGTGCTAATAT 57.011 29.630 0.00 0.00 31.77 1.28
2222 2770 9.988815 ATTCTACTTCAGATTCGTGCTAATATT 57.011 29.630 0.00 0.00 31.77 1.28
2223 2771 9.817809 TTCTACTTCAGATTCGTGCTAATATTT 57.182 29.630 0.00 0.00 31.77 1.40
2224 2772 9.817809 TCTACTTCAGATTCGTGCTAATATTTT 57.182 29.630 0.00 0.00 0.00 1.82
2227 2775 9.167311 ACTTCAGATTCGTGCTAATATTTTTCT 57.833 29.630 0.00 0.00 0.00 2.52
2228 2776 9.643652 CTTCAGATTCGTGCTAATATTTTTCTC 57.356 33.333 0.00 0.00 0.00 2.87
2229 2777 8.948631 TCAGATTCGTGCTAATATTTTTCTCT 57.051 30.769 0.00 0.00 0.00 3.10
2230 2778 8.820933 TCAGATTCGTGCTAATATTTTTCTCTG 58.179 33.333 0.00 0.00 0.00 3.35
2231 2779 8.066595 CAGATTCGTGCTAATATTTTTCTCTGG 58.933 37.037 0.00 0.00 0.00 3.86
2232 2780 6.677781 TTCGTGCTAATATTTTTCTCTGGG 57.322 37.500 0.00 0.00 0.00 4.45
2233 2781 4.574828 TCGTGCTAATATTTTTCTCTGGGC 59.425 41.667 0.00 0.00 0.00 5.36
2234 2782 4.576463 CGTGCTAATATTTTTCTCTGGGCT 59.424 41.667 0.00 0.00 0.00 5.19
2235 2783 5.504665 CGTGCTAATATTTTTCTCTGGGCTG 60.505 44.000 0.00 0.00 0.00 4.85
2236 2784 4.889409 TGCTAATATTTTTCTCTGGGCTGG 59.111 41.667 0.00 0.00 0.00 4.85
2237 2785 4.889995 GCTAATATTTTTCTCTGGGCTGGT 59.110 41.667 0.00 0.00 0.00 4.00
2238 2786 5.009110 GCTAATATTTTTCTCTGGGCTGGTC 59.991 44.000 0.00 0.00 0.00 4.02
2239 2787 4.870021 ATATTTTTCTCTGGGCTGGTCT 57.130 40.909 0.00 0.00 0.00 3.85
2240 2788 5.975988 ATATTTTTCTCTGGGCTGGTCTA 57.024 39.130 0.00 0.00 0.00 2.59
2241 2789 4.870021 ATTTTTCTCTGGGCTGGTCTAT 57.130 40.909 0.00 0.00 0.00 1.98
2242 2790 3.634397 TTTTCTCTGGGCTGGTCTATG 57.366 47.619 0.00 0.00 0.00 2.23
2243 2791 0.833287 TTCTCTGGGCTGGTCTATGC 59.167 55.000 0.00 0.00 0.00 3.14
2244 2792 0.325577 TCTCTGGGCTGGTCTATGCA 60.326 55.000 0.00 0.00 0.00 3.96
2245 2793 0.179062 CTCTGGGCTGGTCTATGCAC 60.179 60.000 0.00 0.00 0.00 4.57
2246 2794 1.153086 CTGGGCTGGTCTATGCACC 60.153 63.158 0.00 0.00 36.90 5.01
2247 2795 2.203070 GGGCTGGTCTATGCACCG 60.203 66.667 0.00 0.00 39.62 4.94
2248 2796 2.897350 GGCTGGTCTATGCACCGC 60.897 66.667 0.00 0.00 39.62 5.68
2249 2797 2.187946 GCTGGTCTATGCACCGCT 59.812 61.111 0.00 0.00 39.62 5.52
2250 2798 1.450312 GCTGGTCTATGCACCGCTT 60.450 57.895 0.00 0.00 39.62 4.68
2251 2799 1.026718 GCTGGTCTATGCACCGCTTT 61.027 55.000 0.00 0.00 39.62 3.51
2252 2800 0.729116 CTGGTCTATGCACCGCTTTG 59.271 55.000 0.00 0.00 39.62 2.77
2253 2801 0.676466 TGGTCTATGCACCGCTTTGG 60.676 55.000 0.00 0.00 46.41 3.28
2254 2802 1.376609 GGTCTATGCACCGCTTTGGG 61.377 60.000 0.00 0.00 44.64 4.12
2255 2803 1.748879 TCTATGCACCGCTTTGGGC 60.749 57.895 0.00 0.00 44.64 5.36
2256 2804 1.750399 CTATGCACCGCTTTGGGCT 60.750 57.895 0.00 0.00 44.64 5.19
2257 2805 1.996786 CTATGCACCGCTTTGGGCTG 61.997 60.000 0.00 0.00 44.64 4.85
2258 2806 2.762969 TATGCACCGCTTTGGGCTGT 62.763 55.000 0.00 0.00 44.64 4.40
2259 2807 3.605664 GCACCGCTTTGGGCTGTT 61.606 61.111 0.00 0.00 44.64 3.16
2260 2808 3.128375 CACCGCTTTGGGCTGTTT 58.872 55.556 0.00 0.00 44.64 2.83
2261 2809 1.441311 CACCGCTTTGGGCTGTTTT 59.559 52.632 0.00 0.00 44.64 2.43
2262 2810 0.179086 CACCGCTTTGGGCTGTTTTT 60.179 50.000 0.00 0.00 44.64 1.94
2285 2833 6.935741 TTCTTGACCGACCATATATTTTGG 57.064 37.500 3.46 3.46 40.26 3.28
2286 2834 5.373222 TCTTGACCGACCATATATTTTGGG 58.627 41.667 8.72 0.00 38.64 4.12
2287 2835 4.781775 TGACCGACCATATATTTTGGGT 57.218 40.909 8.72 0.00 38.64 4.51
2288 2836 4.710324 TGACCGACCATATATTTTGGGTC 58.290 43.478 13.70 13.70 44.97 4.46
2294 2842 5.623956 ACCATATATTTTGGGTCAGTCGA 57.376 39.130 8.72 0.00 38.64 4.20
2295 2843 6.187727 ACCATATATTTTGGGTCAGTCGAT 57.812 37.500 8.72 0.00 38.64 3.59
2296 2844 6.601332 ACCATATATTTTGGGTCAGTCGATT 58.399 36.000 8.72 0.00 38.64 3.34
2297 2845 6.710744 ACCATATATTTTGGGTCAGTCGATTC 59.289 38.462 8.72 0.00 38.64 2.52
2298 2846 6.149474 CCATATATTTTGGGTCAGTCGATTCC 59.851 42.308 0.00 0.00 0.00 3.01
2299 2847 3.721087 ATTTTGGGTCAGTCGATTCCT 57.279 42.857 0.00 0.00 0.00 3.36
2300 2848 3.502123 TTTTGGGTCAGTCGATTCCTT 57.498 42.857 0.00 0.00 0.00 3.36
2301 2849 4.627284 TTTTGGGTCAGTCGATTCCTTA 57.373 40.909 0.00 0.00 0.00 2.69
2302 2850 3.887621 TTGGGTCAGTCGATTCCTTAG 57.112 47.619 0.00 0.00 0.00 2.18
2303 2851 2.816411 TGGGTCAGTCGATTCCTTAGT 58.184 47.619 0.00 0.00 0.00 2.24
2304 2852 2.496070 TGGGTCAGTCGATTCCTTAGTG 59.504 50.000 0.00 0.00 0.00 2.74
2305 2853 2.159085 GGGTCAGTCGATTCCTTAGTGG 60.159 54.545 0.00 0.00 37.10 4.00
2306 2854 2.159085 GGTCAGTCGATTCCTTAGTGGG 60.159 54.545 0.00 0.00 36.20 4.61
2307 2855 1.480954 TCAGTCGATTCCTTAGTGGGC 59.519 52.381 0.00 0.00 36.20 5.36
2308 2856 1.482593 CAGTCGATTCCTTAGTGGGCT 59.517 52.381 0.00 0.00 36.20 5.19
2309 2857 1.482593 AGTCGATTCCTTAGTGGGCTG 59.517 52.381 0.00 0.00 36.20 4.85
2310 2858 1.480954 GTCGATTCCTTAGTGGGCTGA 59.519 52.381 0.00 0.00 36.20 4.26
2311 2859 2.093658 GTCGATTCCTTAGTGGGCTGAA 60.094 50.000 0.00 0.00 36.20 3.02
2312 2860 2.093658 TCGATTCCTTAGTGGGCTGAAC 60.094 50.000 0.00 0.00 36.20 3.18
2313 2861 2.644676 GATTCCTTAGTGGGCTGAACC 58.355 52.381 0.00 0.00 36.20 3.62
2325 2873 1.134946 GGCTGAACCCATTACATGTGC 59.865 52.381 9.11 0.00 0.00 4.57
2326 2874 1.202177 GCTGAACCCATTACATGTGCG 60.202 52.381 9.11 0.00 0.00 5.34
2327 2875 2.355197 CTGAACCCATTACATGTGCGA 58.645 47.619 9.11 0.00 0.00 5.10
2328 2876 2.080693 TGAACCCATTACATGTGCGAC 58.919 47.619 9.11 0.00 0.00 5.19
2329 2877 1.400494 GAACCCATTACATGTGCGACC 59.600 52.381 9.11 0.00 0.00 4.79
2330 2878 0.393808 ACCCATTACATGTGCGACCC 60.394 55.000 9.11 0.00 0.00 4.46
2331 2879 0.393673 CCCATTACATGTGCGACCCA 60.394 55.000 9.11 0.00 0.00 4.51
2332 2880 1.016627 CCATTACATGTGCGACCCAG 58.983 55.000 9.11 0.00 0.00 4.45
2333 2881 0.378257 CATTACATGTGCGACCCAGC 59.622 55.000 9.11 0.00 37.71 4.85
2334 2882 0.748005 ATTACATGTGCGACCCAGCC 60.748 55.000 9.11 0.00 36.02 4.85
2335 2883 1.836999 TTACATGTGCGACCCAGCCT 61.837 55.000 9.11 0.00 36.02 4.58
2336 2884 1.836999 TACATGTGCGACCCAGCCTT 61.837 55.000 9.11 0.00 36.02 4.35
2337 2885 2.045926 ATGTGCGACCCAGCCTTC 60.046 61.111 0.00 0.00 36.02 3.46
2338 2886 3.628646 ATGTGCGACCCAGCCTTCC 62.629 63.158 0.00 0.00 36.02 3.46
2342 2890 4.101448 CGACCCAGCCTTCCCCTG 62.101 72.222 0.00 0.00 0.00 4.45
2343 2891 2.936032 GACCCAGCCTTCCCCTGT 60.936 66.667 0.00 0.00 0.00 4.00
2344 2892 2.936032 ACCCAGCCTTCCCCTGTC 60.936 66.667 0.00 0.00 0.00 3.51
2345 2893 2.612115 CCCAGCCTTCCCCTGTCT 60.612 66.667 0.00 0.00 0.00 3.41
2346 2894 2.674220 CCCAGCCTTCCCCTGTCTC 61.674 68.421 0.00 0.00 0.00 3.36
2347 2895 1.614824 CCAGCCTTCCCCTGTCTCT 60.615 63.158 0.00 0.00 0.00 3.10
2348 2896 1.621672 CCAGCCTTCCCCTGTCTCTC 61.622 65.000 0.00 0.00 0.00 3.20
2349 2897 0.617249 CAGCCTTCCCCTGTCTCTCT 60.617 60.000 0.00 0.00 0.00 3.10
2350 2898 0.118144 AGCCTTCCCCTGTCTCTCTT 59.882 55.000 0.00 0.00 0.00 2.85
2351 2899 0.988063 GCCTTCCCCTGTCTCTCTTT 59.012 55.000 0.00 0.00 0.00 2.52
2352 2900 2.188817 GCCTTCCCCTGTCTCTCTTTA 58.811 52.381 0.00 0.00 0.00 1.85
2353 2901 2.774809 GCCTTCCCCTGTCTCTCTTTAT 59.225 50.000 0.00 0.00 0.00 1.40
2354 2902 3.201045 GCCTTCCCCTGTCTCTCTTTATT 59.799 47.826 0.00 0.00 0.00 1.40
2355 2903 4.324641 GCCTTCCCCTGTCTCTCTTTATTT 60.325 45.833 0.00 0.00 0.00 1.40
2356 2904 5.104485 GCCTTCCCCTGTCTCTCTTTATTTA 60.104 44.000 0.00 0.00 0.00 1.40
2415 2963 7.147391 TGCATTGATAGAAGGGGTTAGAACATA 60.147 37.037 0.00 0.00 0.00 2.29
2418 2966 7.361457 TGATAGAAGGGGTTAGAACATACAG 57.639 40.000 0.00 0.00 0.00 2.74
2426 2974 4.384208 GGGTTAGAACATACAGAGTGGCAT 60.384 45.833 0.00 0.00 0.00 4.40
2427 2975 4.811557 GGTTAGAACATACAGAGTGGCATC 59.188 45.833 0.00 0.00 0.00 3.91
2428 2976 5.419542 GTTAGAACATACAGAGTGGCATCA 58.580 41.667 0.00 0.00 0.00 3.07
2442 2990 1.674519 GGCATCATGGTCACGTACACA 60.675 52.381 0.00 0.00 0.00 3.72
2444 2992 2.482336 GCATCATGGTCACGTACACAAA 59.518 45.455 0.00 0.00 0.00 2.83
2446 2994 4.379394 GCATCATGGTCACGTACACAAAAT 60.379 41.667 0.00 0.00 0.00 1.82
2450 2998 1.604755 GGTCACGTACACAAAATGGCA 59.395 47.619 0.00 0.00 0.00 4.92
2454 3002 1.067915 ACGTACACAAAATGGCATGCC 60.068 47.619 30.54 30.54 0.00 4.40
2464 3012 1.153188 TGGCATGCCCACGATACAG 60.153 57.895 33.44 0.00 39.18 2.74
2467 3015 0.882042 GCATGCCCACGATACAGAGG 60.882 60.000 6.36 0.00 0.00 3.69
2476 3024 2.298446 CACGATACAGAGGGAGCATGAT 59.702 50.000 0.00 0.00 0.00 2.45
2509 3057 0.460311 CCCAGACAACCTAGGCTACG 59.540 60.000 9.30 0.00 0.00 3.51
2512 3060 2.607187 CAGACAACCTAGGCTACGTTG 58.393 52.381 25.19 25.19 42.05 4.10
2520 3068 0.464036 TAGGCTACGTTGCAGGGATG 59.536 55.000 22.89 0.00 34.04 3.51
2527 3075 0.179156 CGTTGCAGGGATGATGTTGC 60.179 55.000 0.00 0.00 37.09 4.17
2540 3088 3.141398 TGATGTTGCTGAGTCCTTTGAC 58.859 45.455 0.00 0.00 42.09 3.18
2552 3100 1.544825 CCTTTGACTCCTGCGAGGGA 61.545 60.000 2.86 0.00 40.77 4.20
2578 3126 1.069596 CGGGCATCGTCCATGATCA 59.930 57.895 0.00 0.00 33.80 2.92
2581 3129 0.583438 GGCATCGTCCATGATCAACG 59.417 55.000 11.34 11.34 33.80 4.10
2584 3132 2.539476 CATCGTCCATGATCAACGTCA 58.461 47.619 15.85 1.26 37.64 4.35
2585 3133 2.278026 TCGTCCATGATCAACGTCAG 57.722 50.000 15.85 0.78 37.64 3.51
2619 3167 0.605319 AGGGCGCAATCTTGTCGAAA 60.605 50.000 10.83 0.00 32.28 3.46
2632 3180 1.153862 TCGAAAATGGCCGCATTGC 60.154 52.632 0.00 0.00 0.00 3.56
2652 3200 2.324879 ATGGCACCAGATGGACCAT 58.675 52.632 19.14 19.14 44.44 3.55
2654 3202 2.123428 GGCACCAGATGGACCATGC 61.123 63.158 12.99 10.24 38.94 4.06
2712 3260 3.131326 CGGTGAAACGGCATCAGTA 57.869 52.632 0.00 0.00 38.12 2.74
2714 3262 0.727398 GGTGAAACGGCATCAGTAGC 59.273 55.000 0.00 0.00 38.12 3.58
2716 3264 1.348594 GAAACGGCATCAGTAGCGC 59.651 57.895 0.00 0.00 0.00 5.92
2718 3266 1.361668 AAACGGCATCAGTAGCGCTG 61.362 55.000 22.90 4.05 46.34 5.18
2740 3288 2.125350 GCCAGCTCAGGAAGTCGG 60.125 66.667 0.00 0.00 0.00 4.79
2744 3292 1.228894 AGCTCAGGAAGTCGGTGGA 60.229 57.895 0.00 0.00 0.00 4.02
2784 3332 3.005539 GGGCAGCACCAGGAGAGA 61.006 66.667 0.00 0.00 42.05 3.10
2796 3344 1.377202 GGAGAGAATGCCGTGCCAA 60.377 57.895 0.00 0.00 0.00 4.52
2798 3346 0.169009 GAGAGAATGCCGTGCCAAAC 59.831 55.000 0.00 0.00 0.00 2.93
2799 3347 0.250901 AGAGAATGCCGTGCCAAACT 60.251 50.000 0.00 0.00 0.00 2.66
2823 3371 0.765510 GGGAGAAGACACACCCAACT 59.234 55.000 0.00 0.00 41.72 3.16
2825 3373 2.028020 GGGAGAAGACACACCCAACTAG 60.028 54.545 0.00 0.00 41.72 2.57
2844 3392 0.836400 GGAGGTGGTGAAGGGTCTCA 60.836 60.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.666969 TTCTATGTTTGACAACGTTCCTG 57.333 39.130 0.00 0.00 35.40 3.86
7 8 5.820947 ACTTTCTATGTTTGACAACGTTCCT 59.179 36.000 0.00 0.00 35.40 3.36
8 9 6.056428 ACTTTCTATGTTTGACAACGTTCC 57.944 37.500 0.00 0.00 35.40 3.62
120 121 1.424403 TGGTGTCGTTATCGCAACAG 58.576 50.000 4.84 0.00 36.50 3.16
128 130 8.561738 AAGAAAGTTCATATTGGTGTCGTTAT 57.438 30.769 0.00 0.00 0.00 1.89
215 217 5.024555 GCTCGATGCTTTGTATCAACTTTC 58.975 41.667 0.00 0.00 38.95 2.62
288 291 2.616842 GGAACATTGTCGTCCTTGTTGT 59.383 45.455 0.99 0.00 32.73 3.32
352 355 0.238289 CAAGTCACCATGTTCGTGGC 59.762 55.000 10.56 0.00 43.27 5.01
356 359 3.961477 TGAAACAAGTCACCATGTTCG 57.039 42.857 0.00 0.00 38.75 3.95
379 760 9.569122 AGAGCTTAAAAGAAAGGTACATACAAA 57.431 29.630 0.00 0.00 37.32 2.83
385 766 6.838382 AGGAAGAGCTTAAAAGAAAGGTACA 58.162 36.000 0.00 0.00 37.32 2.90
394 775 6.920210 CCACTCAAAAAGGAAGAGCTTAAAAG 59.080 38.462 0.00 0.00 32.71 2.27
398 779 5.304686 TCCACTCAAAAAGGAAGAGCTTA 57.695 39.130 0.00 0.00 32.71 3.09
402 783 6.396829 AATGTTCCACTCAAAAAGGAAGAG 57.603 37.500 0.00 0.00 41.74 2.85
404 785 6.340522 ACAAATGTTCCACTCAAAAAGGAAG 58.659 36.000 0.00 0.00 41.74 3.46
407 788 6.593382 TGAAACAAATGTTCCACTCAAAAAGG 59.407 34.615 0.00 0.00 37.25 3.11
408 789 7.593875 TGAAACAAATGTTCCACTCAAAAAG 57.406 32.000 0.00 0.00 37.25 2.27
442 823 4.040829 TGCTAGCTATGCATCAACAGGTAT 59.959 41.667 17.23 0.00 35.31 2.73
448 829 8.633075 TTTAAAATTGCTAGCTATGCATCAAC 57.367 30.769 17.23 0.00 40.34 3.18
468 849 6.318396 TGCATGATGACGAGATGGAATTTAAA 59.682 34.615 0.00 0.00 0.00 1.52
469 850 5.821995 TGCATGATGACGAGATGGAATTTAA 59.178 36.000 0.00 0.00 0.00 1.52
478 859 4.095483 GGAAAACTTGCATGATGACGAGAT 59.905 41.667 6.60 0.00 0.00 2.75
578 1075 2.459060 TCACAATGCATTTGGCTTGG 57.541 45.000 9.83 0.00 45.15 3.61
579 1076 2.481185 GGTTCACAATGCATTTGGCTTG 59.519 45.455 9.83 1.02 45.15 4.01
593 1090 1.102154 CCACAAGCAACAGGTTCACA 58.898 50.000 0.00 0.00 0.00 3.58
618 1115 7.937700 TCAAGGGATTCTCAAGATATAGGTT 57.062 36.000 0.00 0.00 0.00 3.50
673 1174 2.908428 GTGGTCGGCCGGGTTTTT 60.908 61.111 27.83 0.00 37.67 1.94
682 1183 0.928229 CTATGTTTAGCGTGGTCGGC 59.072 55.000 0.00 0.00 37.56 5.54
699 1200 7.977789 TGTTGCTTGTGAAATAAGTGATCTA 57.022 32.000 0.00 0.00 37.38 1.98
768 1269 5.355910 TGCTAAAGAATAATCGTGGGTTTCC 59.644 40.000 0.00 0.00 0.00 3.13
786 1287 4.457949 TGATATCTCCTACGCGATGCTAAA 59.542 41.667 15.93 0.00 0.00 1.85
892 1393 4.039092 ATGGGTGGCGAGCAAGCT 62.039 61.111 0.00 0.00 37.29 3.74
928 1429 4.054671 GTGTGATACTGCTCCTGCTAATC 58.945 47.826 0.00 0.00 40.48 1.75
948 1449 2.014335 TCGATCAGGATGTGCTTGTG 57.986 50.000 0.00 0.00 37.40 3.33
966 1467 3.935828 GCTTTGGGTGAGTAGTTCAGATC 59.064 47.826 0.00 0.00 36.21 2.75
973 1474 1.907255 GGGTAGCTTTGGGTGAGTAGT 59.093 52.381 0.00 0.00 0.00 2.73
976 1477 0.834687 TCGGGTAGCTTTGGGTGAGT 60.835 55.000 0.00 0.00 0.00 3.41
981 1482 2.124695 GCCTCGGGTAGCTTTGGG 60.125 66.667 0.00 0.00 0.00 4.12
1183 1693 2.603473 CCCGTGTCCTCCTCCACA 60.603 66.667 0.00 0.00 0.00 4.17
1222 1732 3.425713 CATGCAGTCCAGCGCGTT 61.426 61.111 8.43 0.00 37.31 4.84
1236 1746 3.333189 CGAGCGCGGGTGATCATG 61.333 66.667 8.83 0.00 0.00 3.07
1437 1971 4.382320 GCCGTTGGTGGCGTCCTA 62.382 66.667 0.00 0.00 46.75 2.94
1605 2139 4.087892 AGCACGAGCCCGCTGAAT 62.088 61.111 0.00 0.00 43.56 2.57
1724 2261 7.148340 GCATTGCTCATGAAGAAACTAACTACT 60.148 37.037 0.16 0.00 34.31 2.57
1725 2262 6.963805 GCATTGCTCATGAAGAAACTAACTAC 59.036 38.462 0.16 0.00 34.31 2.73
1740 2279 0.035152 TGAACTCCGGCATTGCTCAT 60.035 50.000 8.82 0.00 0.00 2.90
1749 2288 3.489785 CGTACATTAATCTGAACTCCGGC 59.510 47.826 0.00 0.00 0.00 6.13
1751 2290 4.360563 AGCGTACATTAATCTGAACTCCG 58.639 43.478 0.00 0.00 0.00 4.63
1856 2395 1.362768 TGAATCGCAACTAGCTGCTG 58.637 50.000 15.72 9.52 42.61 4.41
1857 2396 2.322355 ATGAATCGCAACTAGCTGCT 57.678 45.000 15.72 7.57 42.61 4.24
1858 2397 2.352651 TCAATGAATCGCAACTAGCTGC 59.647 45.455 8.10 8.10 42.61 5.25
1859 2398 3.371898 TGTCAATGAATCGCAACTAGCTG 59.628 43.478 0.00 0.00 42.61 4.24
1904 2443 4.702392 CTTTACAACAGAGCATTCGACAC 58.298 43.478 0.00 0.00 0.00 3.67
1971 2510 4.145052 GGTGAAGACCTCCAAACAATCTT 58.855 43.478 0.00 0.00 39.47 2.40
1973 2512 2.484264 CGGTGAAGACCTCCAAACAATC 59.516 50.000 0.00 0.00 40.58 2.67
1993 2532 6.129221 CCAACAATGTAAGTTGCAATGTTACG 60.129 38.462 21.97 13.42 43.74 3.18
2042 2584 1.891933 TGTTAGATGGCCCATCAGGA 58.108 50.000 25.13 7.64 42.72 3.86
2043 2585 2.734755 TTGTTAGATGGCCCATCAGG 57.265 50.000 25.13 0.00 42.72 3.86
2048 2590 3.205815 GGCATTGTTAGATGGCCCA 57.794 52.632 0.00 0.00 44.30 5.36
2061 2609 0.755327 GCGGACAATTAGGGGGCATT 60.755 55.000 0.00 0.00 0.00 3.56
2069 2617 7.707104 AGAAGGAAAAATATGCGGACAATTAG 58.293 34.615 0.00 0.00 0.00 1.73
2078 2626 6.690957 TGCGAAATTAGAAGGAAAAATATGCG 59.309 34.615 0.00 0.00 0.00 4.73
2080 2628 9.352784 TGTTGCGAAATTAGAAGGAAAAATATG 57.647 29.630 0.00 0.00 0.00 1.78
2083 2631 7.433680 AGTGTTGCGAAATTAGAAGGAAAAAT 58.566 30.769 0.00 0.00 0.00 1.82
2089 2637 5.356882 TTGAGTGTTGCGAAATTAGAAGG 57.643 39.130 0.00 0.00 0.00 3.46
2099 2647 8.766000 TTCTATAGTTATTTTGAGTGTTGCGA 57.234 30.769 0.00 0.00 0.00 5.10
2129 2677 5.577164 CGACTTGCTAATAGCTAAAGTGTGT 59.423 40.000 18.70 3.82 42.97 3.72
2134 2682 4.210120 CAGGCGACTTGCTAATAGCTAAAG 59.790 45.833 13.88 11.59 45.43 1.85
2137 2685 2.956333 TCAGGCGACTTGCTAATAGCTA 59.044 45.455 13.88 4.98 45.43 3.32
2138 2686 1.757118 TCAGGCGACTTGCTAATAGCT 59.243 47.619 13.88 0.00 45.43 3.32
2139 2687 2.225068 TCAGGCGACTTGCTAATAGC 57.775 50.000 5.12 5.12 45.43 2.97
2140 2688 5.741388 ATTTTCAGGCGACTTGCTAATAG 57.259 39.130 0.00 0.00 45.43 1.73
2141 2689 6.821665 AGTAATTTTCAGGCGACTTGCTAATA 59.178 34.615 0.00 0.00 45.43 0.98
2142 2690 5.648092 AGTAATTTTCAGGCGACTTGCTAAT 59.352 36.000 0.00 0.00 45.43 1.73
2143 2691 5.001232 AGTAATTTTCAGGCGACTTGCTAA 58.999 37.500 0.00 0.00 45.43 3.09
2144 2692 4.575885 AGTAATTTTCAGGCGACTTGCTA 58.424 39.130 0.00 0.00 45.43 3.49
2145 2693 3.412386 AGTAATTTTCAGGCGACTTGCT 58.588 40.909 0.00 0.00 45.43 3.91
2146 2694 3.831715 AGTAATTTTCAGGCGACTTGC 57.168 42.857 0.00 0.00 40.21 4.01
2147 2695 5.402270 CCAAAAGTAATTTTCAGGCGACTTG 59.598 40.000 0.00 0.00 40.21 3.16
2148 2696 5.528870 CCAAAAGTAATTTTCAGGCGACTT 58.471 37.500 0.00 0.00 40.21 3.01
2149 2697 4.558697 GCCAAAAGTAATTTTCAGGCGACT 60.559 41.667 12.24 0.00 38.94 4.18
2150 2698 3.673338 GCCAAAAGTAATTTTCAGGCGAC 59.327 43.478 12.24 0.00 38.94 5.19
2151 2699 3.572255 AGCCAAAAGTAATTTTCAGGCGA 59.428 39.130 18.41 0.00 46.40 5.54
2152 2700 3.913089 AGCCAAAAGTAATTTTCAGGCG 58.087 40.909 18.41 1.28 46.40 5.52
2153 2701 4.881920 TGAGCCAAAAGTAATTTTCAGGC 58.118 39.130 17.39 17.39 44.19 4.85
2154 2702 6.089249 ACTGAGCCAAAAGTAATTTTCAGG 57.911 37.500 15.59 9.27 37.56 3.86
2155 2703 6.738114 TGACTGAGCCAAAAGTAATTTTCAG 58.262 36.000 11.55 11.55 38.49 3.02
2156 2704 6.707440 TGACTGAGCCAAAAGTAATTTTCA 57.293 33.333 0.00 0.00 0.00 2.69
2157 2705 8.593492 AATTGACTGAGCCAAAAGTAATTTTC 57.407 30.769 0.00 0.00 0.00 2.29
2158 2706 8.962884 AAATTGACTGAGCCAAAAGTAATTTT 57.037 26.923 0.00 0.00 0.00 1.82
2159 2707 8.962884 AAAATTGACTGAGCCAAAAGTAATTT 57.037 26.923 0.00 0.00 30.13 1.82
2160 2708 8.962884 AAAAATTGACTGAGCCAAAAGTAATT 57.037 26.923 0.00 0.00 0.00 1.40
2161 2709 9.696917 CTAAAAATTGACTGAGCCAAAAGTAAT 57.303 29.630 0.00 0.00 0.00 1.89
2162 2710 8.908903 TCTAAAAATTGACTGAGCCAAAAGTAA 58.091 29.630 0.00 0.00 0.00 2.24
2163 2711 8.458573 TCTAAAAATTGACTGAGCCAAAAGTA 57.541 30.769 0.00 0.00 0.00 2.24
2164 2712 7.068716 ACTCTAAAAATTGACTGAGCCAAAAGT 59.931 33.333 0.00 0.00 0.00 2.66
2165 2713 7.380602 CACTCTAAAAATTGACTGAGCCAAAAG 59.619 37.037 0.00 0.00 0.00 2.27
2166 2714 7.147915 ACACTCTAAAAATTGACTGAGCCAAAA 60.148 33.333 0.00 0.00 0.00 2.44
2167 2715 6.321181 ACACTCTAAAAATTGACTGAGCCAAA 59.679 34.615 0.00 0.00 0.00 3.28
2168 2716 5.827797 ACACTCTAAAAATTGACTGAGCCAA 59.172 36.000 0.00 0.00 0.00 4.52
2169 2717 5.376625 ACACTCTAAAAATTGACTGAGCCA 58.623 37.500 0.00 0.00 0.00 4.75
2170 2718 5.948992 ACACTCTAAAAATTGACTGAGCC 57.051 39.130 0.00 0.00 0.00 4.70
2171 2719 6.959361 TCAACACTCTAAAAATTGACTGAGC 58.041 36.000 0.00 0.00 0.00 4.26
2172 2720 9.956720 AATTCAACACTCTAAAAATTGACTGAG 57.043 29.630 0.00 0.00 0.00 3.35
2173 2721 9.950680 GAATTCAACACTCTAAAAATTGACTGA 57.049 29.630 0.00 0.00 0.00 3.41
2174 2722 9.956720 AGAATTCAACACTCTAAAAATTGACTG 57.043 29.630 8.44 0.00 0.00 3.51
2185 2733 9.862371 GAATCTGAAGTAGAATTCAACACTCTA 57.138 33.333 8.44 0.90 38.66 2.43
2186 2734 7.543868 CGAATCTGAAGTAGAATTCAACACTCT 59.456 37.037 8.44 0.14 38.66 3.24
2187 2735 7.329717 ACGAATCTGAAGTAGAATTCAACACTC 59.670 37.037 8.44 0.00 38.66 3.51
2188 2736 7.116948 CACGAATCTGAAGTAGAATTCAACACT 59.883 37.037 8.44 4.98 38.66 3.55
2189 2737 7.230222 CACGAATCTGAAGTAGAATTCAACAC 58.770 38.462 8.44 2.63 38.66 3.32
2190 2738 6.128553 GCACGAATCTGAAGTAGAATTCAACA 60.129 38.462 8.44 0.00 38.66 3.33
2191 2739 6.091441 AGCACGAATCTGAAGTAGAATTCAAC 59.909 38.462 8.44 0.00 38.66 3.18
2192 2740 6.166279 AGCACGAATCTGAAGTAGAATTCAA 58.834 36.000 8.44 0.00 38.66 2.69
2193 2741 5.724328 AGCACGAATCTGAAGTAGAATTCA 58.276 37.500 8.44 0.00 39.30 2.57
2194 2742 7.757097 TTAGCACGAATCTGAAGTAGAATTC 57.243 36.000 0.00 0.00 39.30 2.17
2195 2743 9.988815 ATATTAGCACGAATCTGAAGTAGAATT 57.011 29.630 0.00 0.00 39.30 2.17
2196 2744 9.988815 AATATTAGCACGAATCTGAAGTAGAAT 57.011 29.630 0.00 0.00 39.30 2.40
2197 2745 9.817809 AAATATTAGCACGAATCTGAAGTAGAA 57.182 29.630 0.00 0.00 39.30 2.10
2198 2746 9.817809 AAAATATTAGCACGAATCTGAAGTAGA 57.182 29.630 0.00 0.00 40.37 2.59
2201 2749 9.167311 AGAAAAATATTAGCACGAATCTGAAGT 57.833 29.630 0.00 0.00 0.00 3.01
2202 2750 9.643652 GAGAAAAATATTAGCACGAATCTGAAG 57.356 33.333 0.00 0.00 0.00 3.02
2203 2751 9.383519 AGAGAAAAATATTAGCACGAATCTGAA 57.616 29.630 0.00 0.00 0.00 3.02
2204 2752 8.820933 CAGAGAAAAATATTAGCACGAATCTGA 58.179 33.333 0.00 0.00 31.80 3.27
2205 2753 8.066595 CCAGAGAAAAATATTAGCACGAATCTG 58.933 37.037 0.00 0.00 0.00 2.90
2206 2754 7.227512 CCCAGAGAAAAATATTAGCACGAATCT 59.772 37.037 0.00 0.00 0.00 2.40
2207 2755 7.355778 CCCAGAGAAAAATATTAGCACGAATC 58.644 38.462 0.00 0.00 0.00 2.52
2208 2756 6.238759 GCCCAGAGAAAAATATTAGCACGAAT 60.239 38.462 0.00 0.00 0.00 3.34
2209 2757 5.065988 GCCCAGAGAAAAATATTAGCACGAA 59.934 40.000 0.00 0.00 0.00 3.85
2210 2758 4.574828 GCCCAGAGAAAAATATTAGCACGA 59.425 41.667 0.00 0.00 0.00 4.35
2211 2759 4.576463 AGCCCAGAGAAAAATATTAGCACG 59.424 41.667 0.00 0.00 0.00 5.34
2212 2760 5.221126 CCAGCCCAGAGAAAAATATTAGCAC 60.221 44.000 0.00 0.00 0.00 4.40
2213 2761 4.889409 CCAGCCCAGAGAAAAATATTAGCA 59.111 41.667 0.00 0.00 0.00 3.49
2214 2762 4.889995 ACCAGCCCAGAGAAAAATATTAGC 59.110 41.667 0.00 0.00 0.00 3.09
2215 2763 6.360618 AGACCAGCCCAGAGAAAAATATTAG 58.639 40.000 0.00 0.00 0.00 1.73
2216 2764 6.327386 AGACCAGCCCAGAGAAAAATATTA 57.673 37.500 0.00 0.00 0.00 0.98
2217 2765 5.198602 AGACCAGCCCAGAGAAAAATATT 57.801 39.130 0.00 0.00 0.00 1.28
2218 2766 4.870021 AGACCAGCCCAGAGAAAAATAT 57.130 40.909 0.00 0.00 0.00 1.28
2219 2767 5.684704 CATAGACCAGCCCAGAGAAAAATA 58.315 41.667 0.00 0.00 0.00 1.40
2220 2768 4.530875 CATAGACCAGCCCAGAGAAAAAT 58.469 43.478 0.00 0.00 0.00 1.82
2221 2769 3.873801 GCATAGACCAGCCCAGAGAAAAA 60.874 47.826 0.00 0.00 0.00 1.94
2222 2770 2.356125 GCATAGACCAGCCCAGAGAAAA 60.356 50.000 0.00 0.00 0.00 2.29
2223 2771 1.210478 GCATAGACCAGCCCAGAGAAA 59.790 52.381 0.00 0.00 0.00 2.52
2224 2772 0.833287 GCATAGACCAGCCCAGAGAA 59.167 55.000 0.00 0.00 0.00 2.87
2225 2773 0.325577 TGCATAGACCAGCCCAGAGA 60.326 55.000 0.00 0.00 0.00 3.10
2226 2774 0.179062 GTGCATAGACCAGCCCAGAG 60.179 60.000 0.00 0.00 0.00 3.35
2227 2775 1.626356 GGTGCATAGACCAGCCCAGA 61.626 60.000 0.00 0.00 35.88 3.86
2228 2776 1.153086 GGTGCATAGACCAGCCCAG 60.153 63.158 0.00 0.00 35.88 4.45
2229 2777 2.998097 GGTGCATAGACCAGCCCA 59.002 61.111 0.00 0.00 35.88 5.36
2230 2778 2.203070 CGGTGCATAGACCAGCCC 60.203 66.667 0.00 0.00 35.50 5.19
2231 2779 2.876368 AAGCGGTGCATAGACCAGCC 62.876 60.000 0.00 0.00 36.67 4.85
2232 2780 1.026718 AAAGCGGTGCATAGACCAGC 61.027 55.000 0.00 0.00 35.50 4.85
2233 2781 0.729116 CAAAGCGGTGCATAGACCAG 59.271 55.000 0.00 0.00 35.50 4.00
2234 2782 0.676466 CCAAAGCGGTGCATAGACCA 60.676 55.000 0.00 0.00 35.50 4.02
2235 2783 1.376609 CCCAAAGCGGTGCATAGACC 61.377 60.000 0.00 0.00 0.00 3.85
2236 2784 1.993369 GCCCAAAGCGGTGCATAGAC 61.993 60.000 0.00 0.00 32.75 2.59
2237 2785 1.748879 GCCCAAAGCGGTGCATAGA 60.749 57.895 0.00 0.00 32.75 1.98
2238 2786 2.800736 GCCCAAAGCGGTGCATAG 59.199 61.111 0.00 0.00 32.75 2.23
2259 2807 8.247562 CCAAAATATATGGTCGGTCAAGAAAAA 58.752 33.333 0.27 0.00 33.08 1.94
2260 2808 7.147983 CCCAAAATATATGGTCGGTCAAGAAAA 60.148 37.037 6.69 0.00 36.14 2.29
2261 2809 6.320164 CCCAAAATATATGGTCGGTCAAGAAA 59.680 38.462 6.69 0.00 36.14 2.52
2262 2810 5.825679 CCCAAAATATATGGTCGGTCAAGAA 59.174 40.000 6.69 0.00 36.14 2.52
2263 2811 5.104277 ACCCAAAATATATGGTCGGTCAAGA 60.104 40.000 6.69 0.00 36.14 3.02
2264 2812 5.130350 ACCCAAAATATATGGTCGGTCAAG 58.870 41.667 6.69 0.00 36.14 3.02
2265 2813 5.118729 ACCCAAAATATATGGTCGGTCAA 57.881 39.130 6.69 0.00 36.14 3.18
2266 2814 4.710324 GACCCAAAATATATGGTCGGTCA 58.290 43.478 13.53 0.00 38.07 4.02
2271 2819 5.607477 TCGACTGACCCAAAATATATGGTC 58.393 41.667 11.36 11.36 45.99 4.02
2272 2820 5.623956 TCGACTGACCCAAAATATATGGT 57.376 39.130 6.69 0.00 36.14 3.55
2273 2821 6.149474 GGAATCGACTGACCCAAAATATATGG 59.851 42.308 0.00 1.28 37.71 2.74
2274 2822 6.936900 AGGAATCGACTGACCCAAAATATATG 59.063 38.462 0.00 0.00 0.00 1.78
2275 2823 7.079451 AGGAATCGACTGACCCAAAATATAT 57.921 36.000 0.00 0.00 0.00 0.86
2276 2824 6.494666 AGGAATCGACTGACCCAAAATATA 57.505 37.500 0.00 0.00 0.00 0.86
2277 2825 5.373812 AGGAATCGACTGACCCAAAATAT 57.626 39.130 0.00 0.00 0.00 1.28
2278 2826 4.837093 AGGAATCGACTGACCCAAAATA 57.163 40.909 0.00 0.00 0.00 1.40
2279 2827 3.721087 AGGAATCGACTGACCCAAAAT 57.279 42.857 0.00 0.00 0.00 1.82
2280 2828 3.502123 AAGGAATCGACTGACCCAAAA 57.498 42.857 0.00 0.00 0.00 2.44
2281 2829 3.581332 ACTAAGGAATCGACTGACCCAAA 59.419 43.478 0.00 0.00 0.00 3.28
2282 2830 3.056107 CACTAAGGAATCGACTGACCCAA 60.056 47.826 0.00 0.00 0.00 4.12
2283 2831 2.496070 CACTAAGGAATCGACTGACCCA 59.504 50.000 0.00 0.00 0.00 4.51
2284 2832 2.159085 CCACTAAGGAATCGACTGACCC 60.159 54.545 0.00 0.00 41.22 4.46
2285 2833 2.159085 CCCACTAAGGAATCGACTGACC 60.159 54.545 0.00 0.00 41.22 4.02
2286 2834 2.738964 GCCCACTAAGGAATCGACTGAC 60.739 54.545 0.00 0.00 41.22 3.51
2287 2835 1.480954 GCCCACTAAGGAATCGACTGA 59.519 52.381 0.00 0.00 41.22 3.41
2288 2836 1.482593 AGCCCACTAAGGAATCGACTG 59.517 52.381 0.00 0.00 41.22 3.51
2289 2837 1.482593 CAGCCCACTAAGGAATCGACT 59.517 52.381 0.00 0.00 41.22 4.18
2290 2838 1.480954 TCAGCCCACTAAGGAATCGAC 59.519 52.381 0.00 0.00 41.22 4.20
2291 2839 1.860641 TCAGCCCACTAAGGAATCGA 58.139 50.000 0.00 0.00 41.22 3.59
2292 2840 2.280628 GTTCAGCCCACTAAGGAATCG 58.719 52.381 0.00 0.00 41.22 3.34
2293 2841 2.644676 GGTTCAGCCCACTAAGGAATC 58.355 52.381 0.00 0.00 41.22 2.52
2294 2842 2.808906 GGTTCAGCCCACTAAGGAAT 57.191 50.000 0.00 0.00 41.22 3.01
2315 2863 0.748005 GGCTGGGTCGCACATGTAAT 60.748 55.000 0.00 0.00 0.00 1.89
2316 2864 1.376683 GGCTGGGTCGCACATGTAA 60.377 57.895 0.00 0.00 0.00 2.41
2317 2865 1.836999 AAGGCTGGGTCGCACATGTA 61.837 55.000 0.00 0.00 0.00 2.29
2318 2866 3.196207 AAGGCTGGGTCGCACATGT 62.196 57.895 0.00 0.00 0.00 3.21
2319 2867 2.360350 AAGGCTGGGTCGCACATG 60.360 61.111 0.00 0.00 0.00 3.21
2320 2868 2.045926 GAAGGCTGGGTCGCACAT 60.046 61.111 0.00 0.00 0.00 3.21
2321 2869 4.329545 GGAAGGCTGGGTCGCACA 62.330 66.667 0.00 0.00 0.00 4.57
2325 2873 4.101448 CAGGGGAAGGCTGGGTCG 62.101 72.222 0.00 0.00 0.00 4.79
2326 2874 2.936032 ACAGGGGAAGGCTGGGTC 60.936 66.667 0.00 0.00 0.00 4.46
2327 2875 2.936032 GACAGGGGAAGGCTGGGT 60.936 66.667 0.00 0.00 0.00 4.51
2328 2876 2.612115 AGACAGGGGAAGGCTGGG 60.612 66.667 0.00 0.00 0.00 4.45
2329 2877 1.614824 AGAGACAGGGGAAGGCTGG 60.615 63.158 0.00 0.00 0.00 4.85
2330 2878 0.617249 AGAGAGACAGGGGAAGGCTG 60.617 60.000 0.00 0.00 0.00 4.85
2331 2879 0.118144 AAGAGAGACAGGGGAAGGCT 59.882 55.000 0.00 0.00 0.00 4.58
2332 2880 0.988063 AAAGAGAGACAGGGGAAGGC 59.012 55.000 0.00 0.00 0.00 4.35
2333 2881 5.443230 AAATAAAGAGAGACAGGGGAAGG 57.557 43.478 0.00 0.00 0.00 3.46
2334 2882 9.467796 AAAATAAATAAAGAGAGACAGGGGAAG 57.532 33.333 0.00 0.00 0.00 3.46
2335 2883 9.462606 GAAAATAAATAAAGAGAGACAGGGGAA 57.537 33.333 0.00 0.00 0.00 3.97
2336 2884 8.836735 AGAAAATAAATAAAGAGAGACAGGGGA 58.163 33.333 0.00 0.00 0.00 4.81
2337 2885 9.114952 GAGAAAATAAATAAAGAGAGACAGGGG 57.885 37.037 0.00 0.00 0.00 4.79
2338 2886 8.821894 CGAGAAAATAAATAAAGAGAGACAGGG 58.178 37.037 0.00 0.00 0.00 4.45
2339 2887 9.587772 TCGAGAAAATAAATAAAGAGAGACAGG 57.412 33.333 0.00 0.00 0.00 4.00
2354 2902 9.661187 CTCTTAGTAGCGTATTCGAGAAAATAA 57.339 33.333 0.00 0.00 39.71 1.40
2355 2903 8.834465 ACTCTTAGTAGCGTATTCGAGAAAATA 58.166 33.333 0.00 0.00 39.71 1.40
2356 2904 7.644551 CACTCTTAGTAGCGTATTCGAGAAAAT 59.355 37.037 0.00 0.00 39.71 1.82
2376 2924 8.969260 TTCTATCAATGCAATGATACACTCTT 57.031 30.769 18.52 0.00 40.44 2.85
2377 2925 7.660617 CCTTCTATCAATGCAATGATACACTCT 59.339 37.037 18.52 0.00 40.44 3.24
2415 2963 0.986527 TGACCATGATGCCACTCTGT 59.013 50.000 0.00 0.00 0.00 3.41
2418 2966 0.391661 ACGTGACCATGATGCCACTC 60.392 55.000 12.12 0.00 0.00 3.51
2426 2974 3.500299 CCATTTTGTGTACGTGACCATGA 59.500 43.478 0.00 0.00 0.00 3.07
2427 2975 3.820689 CCATTTTGTGTACGTGACCATG 58.179 45.455 0.00 0.00 0.00 3.66
2428 2976 2.227865 GCCATTTTGTGTACGTGACCAT 59.772 45.455 0.00 0.00 0.00 3.55
2442 2990 1.408702 GTATCGTGGGCATGCCATTTT 59.591 47.619 36.56 19.27 37.98 1.82
2444 2992 0.106769 TGTATCGTGGGCATGCCATT 60.107 50.000 36.56 18.24 37.98 3.16
2446 2994 1.153188 CTGTATCGTGGGCATGCCA 60.153 57.895 36.56 20.63 37.98 4.92
2450 2998 0.398522 TCCCTCTGTATCGTGGGCAT 60.399 55.000 0.00 0.00 37.57 4.40
2454 3002 1.043816 ATGCTCCCTCTGTATCGTGG 58.956 55.000 0.00 0.00 0.00 4.94
2464 3012 2.787994 CAACCCATATCATGCTCCCTC 58.212 52.381 0.00 0.00 0.00 4.30
2467 3015 2.283145 AGCAACCCATATCATGCTCC 57.717 50.000 0.00 0.00 45.49 4.70
2509 3057 1.135199 CAGCAACATCATCCCTGCAAC 60.135 52.381 0.00 0.00 37.26 4.17
2512 3060 1.022735 CTCAGCAACATCATCCCTGC 58.977 55.000 0.00 0.00 34.96 4.85
2520 3068 3.820777 GTCAAAGGACTCAGCAACATC 57.179 47.619 0.00 0.00 40.99 3.06
2540 3088 3.465403 CCTGGTCCCTCGCAGGAG 61.465 72.222 0.00 0.00 37.67 3.69
2565 3113 2.481969 CCTGACGTTGATCATGGACGAT 60.482 50.000 21.77 8.72 39.85 3.73
2572 3120 1.759445 CTCCCTCCTGACGTTGATCAT 59.241 52.381 0.00 0.00 0.00 2.45
2578 3126 3.382832 CGCCTCCCTCCTGACGTT 61.383 66.667 0.00 0.00 0.00 3.99
2581 3129 3.151022 CTCCGCCTCCCTCCTGAC 61.151 72.222 0.00 0.00 0.00 3.51
2584 3132 4.150454 CTCCTCCGCCTCCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
2606 3154 2.518949 CGGCCATTTTCGACAAGATTG 58.481 47.619 2.24 0.00 0.00 2.67
2610 3158 0.171007 ATGCGGCCATTTTCGACAAG 59.829 50.000 2.24 0.00 0.00 3.16
2632 3180 1.524621 GGTCCATCTGGTGCCATCG 60.525 63.158 0.00 0.00 36.34 3.84
2637 3185 2.123428 GGCATGGTCCATCTGGTGC 61.123 63.158 0.00 3.40 36.34 5.01
2639 3187 0.980754 TACGGCATGGTCCATCTGGT 60.981 55.000 0.00 2.58 36.34 4.00
2667 3215 1.751563 GCCTGGGCTCTCCACTATC 59.248 63.158 4.12 0.00 41.46 2.08
2695 3243 0.727398 GCTACTGATGCCGTTTCACC 59.273 55.000 0.00 0.00 0.00 4.02
2696 3244 0.370273 CGCTACTGATGCCGTTTCAC 59.630 55.000 0.00 0.00 0.00 3.18
2699 3247 1.079127 AGCGCTACTGATGCCGTTT 60.079 52.632 8.99 0.00 0.00 3.60
2740 3288 2.509336 CGTGTCGGATGGCTCCAC 60.509 66.667 0.00 0.00 42.19 4.02
2766 3314 4.463879 CTCTCCTGGTGCTGCCCG 62.464 72.222 0.00 0.00 36.04 6.13
2772 3320 1.817099 CGGCATTCTCTCCTGGTGC 60.817 63.158 0.00 0.00 35.17 5.01
2784 3332 0.173255 GCATAGTTTGGCACGGCATT 59.827 50.000 0.00 0.00 0.00 3.56
2796 3344 1.899814 TGTGTCTTCTCCCGCATAGTT 59.100 47.619 0.00 0.00 0.00 2.24
2798 3346 1.471676 GGTGTGTCTTCTCCCGCATAG 60.472 57.143 0.00 0.00 0.00 2.23
2799 3347 0.535335 GGTGTGTCTTCTCCCGCATA 59.465 55.000 0.00 0.00 0.00 3.14
2823 3371 0.790993 AGACCCTTCACCACCTCCTA 59.209 55.000 0.00 0.00 0.00 2.94
2825 3373 0.836400 TGAGACCCTTCACCACCTCC 60.836 60.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.