Multiple sequence alignment - TraesCS5B01G253600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G253600 chr5B 100.000 4373 0 0 1 4373 436243505 436247877 0.000000e+00 8076.0
1 TraesCS5B01G253600 chr5B 83.566 2726 315 77 728 3388 436213587 436216244 0.000000e+00 2429.0
2 TraesCS5B01G253600 chr5B 89.825 285 10 4 310 577 436213229 436213511 9.000000e-92 348.0
3 TraesCS5B01G253600 chr5D 92.812 2560 134 15 638 3185 368299112 368301633 0.000000e+00 3663.0
4 TraesCS5B01G253600 chr5D 86.110 2383 249 53 732 3061 368290308 368292661 0.000000e+00 2492.0
5 TraesCS5B01G253600 chr5D 93.103 638 31 5 3 632 368298415 368299047 0.000000e+00 922.0
6 TraesCS5B01G253600 chr5D 87.109 512 38 12 3737 4235 368302389 368302885 4.940000e-154 555.0
7 TraesCS5B01G253600 chr5D 86.089 381 20 16 280 632 368289898 368290273 3.190000e-101 379.0
8 TraesCS5B01G253600 chr5D 94.241 191 9 2 3200 3389 368301617 368301806 1.540000e-74 291.0
9 TraesCS5B01G253600 chr5D 92.053 151 11 1 3238 3388 368292812 368292961 1.230000e-50 211.0
10 TraesCS5B01G253600 chr5D 87.755 147 17 1 4228 4373 368324383 368324529 2.090000e-38 171.0
11 TraesCS5B01G253600 chr5D 94.444 36 2 0 6 41 502110969 502110934 6.110000e-04 56.5
12 TraesCS5B01G253600 chr5A 92.049 2440 136 16 764 3185 470184033 470186432 0.000000e+00 3378.0
13 TraesCS5B01G253600 chr5A 85.268 2403 247 48 732 3061 470174784 470177152 0.000000e+00 2377.0
14 TraesCS5B01G253600 chr5A 86.444 509 27 20 3716 4210 470187027 470187507 1.800000e-143 520.0
15 TraesCS5B01G253600 chr5A 85.337 416 21 9 244 635 470183528 470183927 1.140000e-105 394.0
16 TraesCS5B01G253600 chr5A 89.313 262 16 7 3 258 470183252 470183507 7.060000e-83 318.0
17 TraesCS5B01G253600 chr5A 91.444 187 12 3 3200 3386 470186416 470186598 2.020000e-63 254.0
18 TraesCS5B01G253600 chr5A 87.582 153 11 2 3236 3388 470177298 470177442 2.090000e-38 171.0
19 TraesCS5B01G253600 chr5A 97.143 35 1 0 6 40 631050404 631050370 4.720000e-05 60.2
20 TraesCS5B01G253600 chr7A 93.258 89 6 0 638 726 93133798 93133886 9.870000e-27 132.0
21 TraesCS5B01G253600 chr3B 92.135 89 7 0 638 726 452550993 452550905 4.590000e-25 126.0
22 TraesCS5B01G253600 chr2D 91.304 92 8 0 638 729 270480297 270480388 4.590000e-25 126.0
23 TraesCS5B01G253600 chr2A 91.304 92 8 0 638 729 346210376 346210467 4.590000e-25 126.0
24 TraesCS5B01G253600 chr3D 91.111 90 8 0 638 727 610540009 610540098 5.940000e-24 122.0
25 TraesCS5B01G253600 chr2B 89.583 96 10 0 638 733 8709847 8709942 5.940000e-24 122.0
26 TraesCS5B01G253600 chr4B 91.011 89 8 0 638 726 24837168 24837256 2.140000e-23 121.0
27 TraesCS5B01G253600 chr4B 86.667 105 12 1 638 742 553249721 553249823 9.940000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G253600 chr5B 436243505 436247877 4372 False 8076.000000 8076 100.00000 1 4373 1 chr5B.!!$F1 4372
1 TraesCS5B01G253600 chr5B 436213229 436216244 3015 False 1388.500000 2429 86.69550 310 3388 2 chr5B.!!$F2 3078
2 TraesCS5B01G253600 chr5D 368298415 368302885 4470 False 1357.750000 3663 91.81625 3 4235 4 chr5D.!!$F3 4232
3 TraesCS5B01G253600 chr5D 368289898 368292961 3063 False 1027.333333 2492 88.08400 280 3388 3 chr5D.!!$F2 3108
4 TraesCS5B01G253600 chr5A 470174784 470177442 2658 False 1274.000000 2377 86.42500 732 3388 2 chr5A.!!$F1 2656
5 TraesCS5B01G253600 chr5A 470183252 470187507 4255 False 972.800000 3378 88.91740 3 4210 5 chr5A.!!$F2 4207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 292 0.413434 AAGGGGTTGGGGATTGAAGG 59.587 55.0 0.00 0.00 0.0 3.46 F
793 950 0.813821 GCTTGATGAACCTCTTGGGC 59.186 55.0 0.00 0.00 39.1 5.36 F
1047 1221 1.048601 AGAAGAAACGAGTGGCCAGA 58.951 50.0 5.11 0.00 0.0 3.86 F
2238 2424 0.104304 AACACGAACGCTCTGAGGTT 59.896 50.0 6.83 8.78 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1145 1319 0.107508 CATGGTGAACTGCCGATCCT 60.108 55.000 0.0 0.0 0.00 3.24 R
2067 2250 1.065418 CGGGGGCTGAAATCTAACAGT 60.065 52.381 0.0 0.0 36.62 3.55 R
2827 3054 0.745468 GGGAGGCTACTGGAGTAACG 59.255 60.000 0.0 0.0 0.00 3.18 R
3426 3708 0.032130 GTGGAACTGTCAGCACTCGA 59.968 55.000 0.0 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.494491 TGGTCATGGATTTGAGAAAAGTTCAT 59.506 34.615 0.00 0.00 0.00 2.57
224 231 5.546621 ACAATATGACCAACGCTATAGGT 57.453 39.130 1.04 0.00 38.63 3.08
250 292 0.413434 AAGGGGTTGGGGATTGAAGG 59.587 55.000 0.00 0.00 0.00 3.46
254 296 1.595093 GGTTGGGGATTGAAGGCGTG 61.595 60.000 0.00 0.00 0.00 5.34
302 351 1.908483 GGGCCAGAGACGGAATTCT 59.092 57.895 4.39 0.00 0.00 2.40
386 436 6.203530 GGCGTGATCTCATCATTTATTTCTCA 59.796 38.462 0.00 0.00 42.04 3.27
387 437 7.094890 GGCGTGATCTCATCATTTATTTCTCAT 60.095 37.037 0.00 0.00 42.04 2.90
388 438 7.956403 GCGTGATCTCATCATTTATTTCTCATC 59.044 37.037 0.00 0.00 42.04 2.92
507 582 3.353836 GCAACCGCGCTTCTTCCA 61.354 61.111 5.56 0.00 0.00 3.53
635 726 2.098770 GCGAGTACGAAATAGTGGAGGT 59.901 50.000 0.00 0.00 42.66 3.85
639 789 4.084287 AGTACGAAATAGTGGAGGTGTCA 58.916 43.478 0.00 0.00 0.00 3.58
643 793 6.045072 ACGAAATAGTGGAGGTGTCAAATA 57.955 37.500 0.00 0.00 0.00 1.40
656 806 6.682746 AGGTGTCAAATAGATGTATCTAGCG 58.317 40.000 7.57 0.02 42.20 4.26
658 808 6.153067 GTGTCAAATAGATGTATCTAGCGCT 58.847 40.000 17.26 17.26 42.20 5.92
661 811 7.808381 TGTCAAATAGATGTATCTAGCGCTAAC 59.192 37.037 19.37 14.30 42.20 2.34
664 814 8.642885 CAAATAGATGTATCTAGCGCTAACTTG 58.357 37.037 19.37 6.84 42.20 3.16
687 837 5.366477 TGGTGCTAGATACATCCATTTGAGA 59.634 40.000 0.00 0.00 0.00 3.27
693 843 7.170658 GCTAGATACATCCATTTGAGAGACAAC 59.829 40.741 0.00 0.00 38.29 3.32
725 875 4.175962 AGGTTTTTCAGATGGAGGGAGTA 58.824 43.478 0.00 0.00 0.00 2.59
793 950 0.813821 GCTTGATGAACCTCTTGGGC 59.186 55.000 0.00 0.00 39.10 5.36
865 1038 4.272489 TCCTGTTTTGATCCCATGATGTC 58.728 43.478 0.00 0.00 0.00 3.06
922 1096 9.066892 TGTATTTTCTGCAGAGTTTATTCAGTT 57.933 29.630 17.43 0.00 0.00 3.16
949 1123 2.919494 CGTTTGGCTTGCCAGTCCC 61.919 63.158 14.33 3.67 0.00 4.46
1038 1212 2.223479 GCAGCCAACAAAGAAGAAACGA 60.223 45.455 0.00 0.00 0.00 3.85
1047 1221 1.048601 AGAAGAAACGAGTGGCCAGA 58.951 50.000 5.11 0.00 0.00 3.86
1140 1314 1.610554 GCAAGCAGTGGGATGGCATT 61.611 55.000 0.00 0.00 0.00 3.56
1145 1319 1.479205 GCAGTGGGATGGCATTATCCA 60.479 52.381 0.00 7.71 46.89 3.41
1151 1325 2.636830 GGATGGCATTATCCAGGATCG 58.363 52.381 4.75 0.00 44.90 3.69
1495 1672 5.125900 CCAGCCACAAATGAATACAAGATCA 59.874 40.000 0.00 0.00 0.00 2.92
1789 1966 1.388547 TCCTGCATTTGGTAATCCGC 58.611 50.000 0.00 0.00 36.30 5.54
2006 2189 3.727726 CCATGCATAGTGGTAACGATGA 58.272 45.455 0.00 0.00 40.69 2.92
2020 2203 5.577164 GGTAACGATGACATATACTGCCATC 59.423 44.000 0.00 0.00 40.32 3.51
2067 2250 2.753452 TGACGTAACCAAGTTGGCAAAA 59.247 40.909 22.25 1.89 42.67 2.44
2238 2424 0.104304 AACACGAACGCTCTGAGGTT 59.896 50.000 6.83 8.78 0.00 3.50
2316 2505 5.354513 GCTTCACTTCCCTTGTTAACCTATC 59.645 44.000 2.48 0.00 0.00 2.08
2684 2898 5.706916 TCTTTCAGCAGAATCATTTTGCTC 58.293 37.500 12.42 0.00 45.75 4.26
2694 2917 6.002704 AGAATCATTTTGCTCTTGTCTCTGT 58.997 36.000 0.00 0.00 0.00 3.41
2695 2918 5.624344 ATCATTTTGCTCTTGTCTCTGTG 57.376 39.130 0.00 0.00 0.00 3.66
2827 3054 3.504906 GGTTTGTGAAGGCCTAACTTACC 59.495 47.826 5.16 14.77 0.00 2.85
2835 3062 2.762887 AGGCCTAACTTACCGTTACTCC 59.237 50.000 1.29 0.00 37.05 3.85
2870 3097 7.773224 CCCTGTTCATGTTACATGTTCCTTATA 59.227 37.037 22.58 0.50 0.00 0.98
2887 3117 5.015178 TCCTTATATAGCCCCATTTTCCCTG 59.985 44.000 0.00 0.00 0.00 4.45
3004 3235 5.972107 ATTCATTTATCCATAGCACTGGC 57.028 39.130 0.00 0.00 36.16 4.85
3061 3304 5.342259 GGAAGCATCGAAATTAAACACACAC 59.658 40.000 0.00 0.00 0.00 3.82
3062 3305 5.431420 AGCATCGAAATTAAACACACACA 57.569 34.783 0.00 0.00 0.00 3.72
3063 3306 5.212194 AGCATCGAAATTAAACACACACAC 58.788 37.500 0.00 0.00 0.00 3.82
3064 3307 4.973051 GCATCGAAATTAAACACACACACA 59.027 37.500 0.00 0.00 0.00 3.72
3065 3308 5.108405 GCATCGAAATTAAACACACACACAC 60.108 40.000 0.00 0.00 0.00 3.82
3066 3309 5.547181 TCGAAATTAAACACACACACACA 57.453 34.783 0.00 0.00 0.00 3.72
3067 3310 5.325494 TCGAAATTAAACACACACACACAC 58.675 37.500 0.00 0.00 0.00 3.82
3068 3311 5.089411 CGAAATTAAACACACACACACACA 58.911 37.500 0.00 0.00 0.00 3.72
3069 3312 5.003027 CGAAATTAAACACACACACACACAC 59.997 40.000 0.00 0.00 0.00 3.82
3070 3313 5.378292 AATTAAACACACACACACACACA 57.622 34.783 0.00 0.00 0.00 3.72
3071 3314 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
3072 3315 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
3073 3316 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3074 3317 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3075 3318 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3078 3321 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3085 3328 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3096 3339 3.316588 ACACACACACACAAGTTGAAACA 59.683 39.130 10.54 0.00 0.00 2.83
3108 3351 3.820557 AGTTGAAACACTGCACCATACT 58.179 40.909 0.00 0.00 0.00 2.12
3109 3352 3.815401 AGTTGAAACACTGCACCATACTC 59.185 43.478 0.00 0.00 0.00 2.59
3110 3353 2.778299 TGAAACACTGCACCATACTCC 58.222 47.619 0.00 0.00 0.00 3.85
3124 3375 3.187700 CATACTCCGTGTTTAGGTCAGC 58.812 50.000 0.00 0.00 0.00 4.26
3213 3467 6.934048 TGACCGCAATAAAATCATGTCATA 57.066 33.333 0.00 0.00 0.00 2.15
3232 3486 5.704515 GTCATATTGCAAGGCTGTAGATCAT 59.295 40.000 4.94 0.00 0.00 2.45
3234 3488 3.920231 TTGCAAGGCTGTAGATCATCT 57.080 42.857 0.00 0.00 0.00 2.90
3247 3529 7.384660 GCTGTAGATCATCTTCTGTATCCTTTG 59.615 40.741 0.00 0.00 0.00 2.77
3267 3549 6.015940 CCTTTGTCTTAGAACAGCATCCTTTT 60.016 38.462 0.00 0.00 0.00 2.27
3357 3639 1.751351 AGCTCCAGATTCGATTCGTCA 59.249 47.619 5.89 0.00 0.00 4.35
3359 3641 3.126831 GCTCCAGATTCGATTCGTCAAT 58.873 45.455 5.89 0.00 0.00 2.57
3398 3680 3.049674 CGCCGGCCATATTCGCAT 61.050 61.111 23.46 0.00 0.00 4.73
3399 3681 2.616330 CGCCGGCCATATTCGCATT 61.616 57.895 23.46 0.00 0.00 3.56
3400 3682 1.659794 GCCGGCCATATTCGCATTT 59.340 52.632 18.11 0.00 0.00 2.32
3401 3683 0.387239 GCCGGCCATATTCGCATTTC 60.387 55.000 18.11 0.00 0.00 2.17
3403 3685 0.725784 CGGCCATATTCGCATTTCGC 60.726 55.000 2.24 0.00 38.27 4.70
3404 3686 0.310543 GGCCATATTCGCATTTCGCA 59.689 50.000 0.00 0.00 42.60 5.10
3405 3687 1.664016 GGCCATATTCGCATTTCGCAG 60.664 52.381 0.00 0.00 42.60 5.18
3406 3688 1.664016 GCCATATTCGCATTTCGCAGG 60.664 52.381 0.00 0.00 42.60 4.85
3407 3689 1.069022 CCATATTCGCATTTCGCAGGG 60.069 52.381 0.00 0.00 42.60 4.45
3409 3691 0.107410 TATTCGCATTTCGCAGGGGT 60.107 50.000 0.00 0.00 42.60 4.95
3410 3692 1.656818 ATTCGCATTTCGCAGGGGTG 61.657 55.000 0.00 0.00 42.60 4.61
3411 3693 4.481112 CGCATTTCGCAGGGGTGC 62.481 66.667 0.00 0.00 42.60 5.01
3412 3694 3.064324 GCATTTCGCAGGGGTGCT 61.064 61.111 0.00 0.00 41.79 4.40
3413 3695 2.639327 GCATTTCGCAGGGGTGCTT 61.639 57.895 0.00 0.00 41.79 3.91
3414 3696 1.213537 CATTTCGCAGGGGTGCTTG 59.786 57.895 0.00 0.00 0.00 4.01
3415 3697 2.639327 ATTTCGCAGGGGTGCTTGC 61.639 57.895 0.00 0.00 36.97 4.01
3416 3698 3.790416 TTTCGCAGGGGTGCTTGCT 62.790 57.895 0.00 0.00 38.16 3.91
3420 3702 2.599578 CAGGGGTGCTTGCTGCTT 60.600 61.111 0.00 0.00 43.37 3.91
3421 3703 2.599578 AGGGGTGCTTGCTGCTTG 60.600 61.111 0.00 0.00 43.37 4.01
3422 3704 3.688159 GGGGTGCTTGCTGCTTGG 61.688 66.667 0.00 0.00 43.37 3.61
3423 3705 3.688159 GGGTGCTTGCTGCTTGGG 61.688 66.667 0.00 0.00 43.37 4.12
3424 3706 4.368543 GGTGCTTGCTGCTTGGGC 62.369 66.667 0.00 0.69 43.37 5.36
3425 3707 3.300765 GTGCTTGCTGCTTGGGCT 61.301 61.111 0.00 0.00 43.37 5.19
3426 3708 2.522436 TGCTTGCTGCTTGGGCTT 60.522 55.556 0.00 0.00 43.37 4.35
3428 3710 2.564975 CTTGCTGCTTGGGCTTCG 59.435 61.111 0.00 0.00 39.59 3.79
3429 3711 1.968017 CTTGCTGCTTGGGCTTCGA 60.968 57.895 0.00 0.00 39.59 3.71
3431 3713 2.359230 GCTGCTTGGGCTTCGAGT 60.359 61.111 0.00 0.00 39.59 4.18
3432 3714 2.684843 GCTGCTTGGGCTTCGAGTG 61.685 63.158 0.00 0.00 39.59 3.51
3433 3715 2.669569 TGCTTGGGCTTCGAGTGC 60.670 61.111 4.21 4.21 39.59 4.40
3435 3717 2.684843 GCTTGGGCTTCGAGTGCTG 61.685 63.158 11.32 3.13 35.22 4.41
3444 3751 0.750249 TTCGAGTGCTGACAGTTCCA 59.250 50.000 3.99 0.00 0.00 3.53
3457 3764 2.238646 ACAGTTCCACTTCCTGACAACA 59.761 45.455 0.00 0.00 0.00 3.33
3460 3767 2.341846 TCCACTTCCTGACAACAACC 57.658 50.000 0.00 0.00 0.00 3.77
3462 3769 0.307760 CACTTCCTGACAACAACCGC 59.692 55.000 0.00 0.00 0.00 5.68
3463 3770 0.818040 ACTTCCTGACAACAACCGCC 60.818 55.000 0.00 0.00 0.00 6.13
3464 3771 0.817634 CTTCCTGACAACAACCGCCA 60.818 55.000 0.00 0.00 0.00 5.69
3465 3772 0.179004 TTCCTGACAACAACCGCCAT 60.179 50.000 0.00 0.00 0.00 4.40
3467 3774 1.580942 CTGACAACAACCGCCATGG 59.419 57.895 7.63 7.63 46.41 3.66
3468 3775 2.258286 GACAACAACCGCCATGGC 59.742 61.111 27.67 27.67 43.94 4.40
3486 3859 2.258013 CGCGGACTTGCCAAAGGAA 61.258 57.895 0.00 0.00 37.76 3.36
3487 3860 1.791103 CGCGGACTTGCCAAAGGAAA 61.791 55.000 0.00 0.00 37.76 3.13
3540 3920 7.521529 CATCATAAATAGGAGCATTACGGTTG 58.478 38.462 0.00 0.00 0.00 3.77
3548 3928 3.181500 GGAGCATTACGGTTGTGATTTCC 60.181 47.826 0.00 0.00 0.00 3.13
3565 3945 5.241506 TGATTTCCCAACTCATTCTGTCAAC 59.758 40.000 0.00 0.00 0.00 3.18
3566 3946 3.855255 TCCCAACTCATTCTGTCAACA 57.145 42.857 0.00 0.00 0.00 3.33
3567 3947 4.163441 TCCCAACTCATTCTGTCAACAA 57.837 40.909 0.00 0.00 0.00 2.83
3568 3948 3.882888 TCCCAACTCATTCTGTCAACAAC 59.117 43.478 0.00 0.00 0.00 3.32
3600 3980 3.407657 CTGATCTTCAGCAGGCGC 58.592 61.111 0.00 0.00 37.72 6.53
3610 3990 2.863153 GCAGGCGCTGTGTAAGTG 59.137 61.111 7.64 0.00 39.57 3.16
3617 3997 1.082756 GCTGTGTAAGTGCGTGTGC 60.083 57.895 0.00 0.00 43.20 4.57
3639 4019 5.293324 TGCATCTATGTTGTAATCGGTGTTC 59.707 40.000 0.00 0.00 0.00 3.18
3640 4020 5.277345 GCATCTATGTTGTAATCGGTGTTCC 60.277 44.000 0.00 0.00 0.00 3.62
3645 4025 4.062293 TGTTGTAATCGGTGTTCCTCAAG 58.938 43.478 0.00 0.00 0.00 3.02
3648 4028 4.963373 TGTAATCGGTGTTCCTCAAGAAA 58.037 39.130 0.00 0.00 35.85 2.52
3653 4033 4.127171 TCGGTGTTCCTCAAGAAAGAAAG 58.873 43.478 0.00 0.00 35.85 2.62
3654 4034 4.127171 CGGTGTTCCTCAAGAAAGAAAGA 58.873 43.478 0.00 0.00 35.85 2.52
3656 4036 5.065988 CGGTGTTCCTCAAGAAAGAAAGAAA 59.934 40.000 0.00 0.00 35.85 2.52
3657 4037 6.404293 CGGTGTTCCTCAAGAAAGAAAGAAAA 60.404 38.462 0.00 0.00 35.85 2.29
3658 4038 7.320399 GGTGTTCCTCAAGAAAGAAAGAAAAA 58.680 34.615 0.00 0.00 35.85 1.94
3677 4057 3.963383 AAAATGTATCGTCCCGATTGC 57.037 42.857 4.30 0.11 44.59 3.56
3681 4061 2.546778 TGTATCGTCCCGATTGCTTTC 58.453 47.619 4.30 0.00 44.59 2.62
3682 4062 2.093921 TGTATCGTCCCGATTGCTTTCA 60.094 45.455 4.30 0.00 44.59 2.69
3683 4063 2.107950 ATCGTCCCGATTGCTTTCAA 57.892 45.000 0.00 0.00 44.59 2.69
3684 4064 1.153353 TCGTCCCGATTGCTTTCAAC 58.847 50.000 0.00 0.00 34.60 3.18
3687 4067 1.880027 GTCCCGATTGCTTTCAACACT 59.120 47.619 0.00 0.00 34.60 3.55
3689 4069 2.293122 TCCCGATTGCTTTCAACACTTG 59.707 45.455 0.00 0.00 34.60 3.16
3693 4073 4.026640 CCGATTGCTTTCAACACTTGTTTG 60.027 41.667 0.00 0.00 35.83 2.93
3702 4083 5.614923 TCAACACTTGTTTGAGTTTCGAA 57.385 34.783 0.00 0.00 35.83 3.71
3705 4086 6.918569 TCAACACTTGTTTGAGTTTCGAAAAA 59.081 30.769 13.10 0.28 35.83 1.94
3706 4087 6.927933 ACACTTGTTTGAGTTTCGAAAAAG 57.072 33.333 13.10 12.68 39.78 2.27
3707 4088 6.674066 ACACTTGTTTGAGTTTCGAAAAAGA 58.326 32.000 13.10 0.00 37.30 2.52
3708 4089 6.581166 ACACTTGTTTGAGTTTCGAAAAAGAC 59.419 34.615 13.10 7.55 37.30 3.01
3709 4090 5.793457 ACTTGTTTGAGTTTCGAAAAAGACG 59.207 36.000 13.10 2.47 37.30 4.18
3711 4092 3.328237 TTGAGTTTCGAAAAAGACGCC 57.672 42.857 13.10 0.00 0.00 5.68
3712 4093 1.259507 TGAGTTTCGAAAAAGACGCCG 59.740 47.619 13.10 0.00 0.00 6.46
3713 4094 0.041576 AGTTTCGAAAAAGACGCCGC 60.042 50.000 13.10 0.00 0.00 6.53
3714 4095 1.083273 TTTCGAAAAAGACGCCGCG 60.083 52.632 12.14 12.14 0.00 6.46
3734 4281 1.011968 TTGCCGTTGTTCCTCGATCG 61.012 55.000 9.36 9.36 0.00 3.69
3735 4282 1.153901 GCCGTTGTTCCTCGATCGA 60.154 57.895 18.32 18.32 0.00 3.59
3736 4283 0.527817 GCCGTTGTTCCTCGATCGAT 60.528 55.000 19.78 0.00 0.00 3.59
3737 4284 1.478137 CCGTTGTTCCTCGATCGATC 58.522 55.000 19.78 15.68 0.00 3.69
3780 4327 4.508128 ACCGGCAGATGCGTACCG 62.508 66.667 0.00 7.38 45.21 4.02
3792 4339 1.515519 CGTACCGTGATGTCCACCG 60.516 63.158 0.00 0.00 42.76 4.94
3819 4366 2.177531 GCTGTGCATGACGCCAAG 59.822 61.111 0.00 0.00 41.33 3.61
3821 4368 3.332493 CTGTGCATGACGCCAAGCC 62.332 63.158 0.00 0.00 41.33 4.35
3822 4369 3.058160 GTGCATGACGCCAAGCCT 61.058 61.111 0.00 0.00 41.33 4.58
3823 4370 1.745115 GTGCATGACGCCAAGCCTA 60.745 57.895 0.00 0.00 41.33 3.93
3824 4371 1.745115 TGCATGACGCCAAGCCTAC 60.745 57.895 0.00 0.00 41.33 3.18
3833 4380 2.361438 ACGCCAAGCCTACTGTCTATAC 59.639 50.000 0.00 0.00 0.00 1.47
3869 4416 4.177026 GTGACATGACATGACCAGTCTAC 58.823 47.826 22.19 5.40 36.94 2.59
3870 4417 3.195610 TGACATGACATGACCAGTCTACC 59.804 47.826 22.19 0.00 36.94 3.18
3871 4418 2.166459 ACATGACATGACCAGTCTACCG 59.834 50.000 22.19 0.00 36.94 4.02
3886 4437 2.891580 TCTACCGATATCAGTTCCTGCC 59.108 50.000 3.12 0.00 0.00 4.85
3890 4441 1.338337 CGATATCAGTTCCTGCCTCGT 59.662 52.381 3.12 0.00 0.00 4.18
3891 4442 2.605823 CGATATCAGTTCCTGCCTCGTC 60.606 54.545 3.12 0.00 0.00 4.20
3934 4485 2.750350 CAGACGGCCTGGAACCTT 59.250 61.111 0.00 0.00 39.23 3.50
3935 4486 1.073199 CAGACGGCCTGGAACCTTT 59.927 57.895 0.00 0.00 39.23 3.11
3936 4487 0.955919 CAGACGGCCTGGAACCTTTC 60.956 60.000 0.00 0.00 39.23 2.62
3937 4488 2.032071 ACGGCCTGGAACCTTTCG 59.968 61.111 0.00 0.00 0.00 3.46
3938 4489 2.032071 CGGCCTGGAACCTTTCGT 59.968 61.111 0.00 0.00 0.00 3.85
3965 4517 2.432456 CAGCAAGCACGGCGAGTA 60.432 61.111 16.62 0.00 36.08 2.59
4027 4583 1.163420 TTTCAAGAAAGCGCTGCGGA 61.163 50.000 24.61 7.50 0.00 5.54
4032 4588 3.941657 GAAAGCGCTGCGGAGAGGT 62.942 63.158 24.61 7.51 0.00 3.85
4191 4757 0.311790 CAAACGCAGGCACAATCAGT 59.688 50.000 0.00 0.00 0.00 3.41
4229 4795 3.382865 TGCTGCCTGTTTTATGTGTCAAA 59.617 39.130 0.00 0.00 0.00 2.69
4235 4801 4.082787 CCTGTTTTATGTGTCAAAGGCGAT 60.083 41.667 0.00 0.00 0.00 4.58
4236 4802 4.793071 TGTTTTATGTGTCAAAGGCGATG 58.207 39.130 0.00 0.00 0.00 3.84
4237 4803 4.517075 TGTTTTATGTGTCAAAGGCGATGA 59.483 37.500 0.00 0.00 0.00 2.92
4238 4804 5.009110 TGTTTTATGTGTCAAAGGCGATGAA 59.991 36.000 0.00 0.00 0.00 2.57
4239 4805 4.944962 TTATGTGTCAAAGGCGATGAAG 57.055 40.909 0.00 0.00 0.00 3.02
4240 4806 2.542020 TGTGTCAAAGGCGATGAAGA 57.458 45.000 0.00 0.00 0.00 2.87
4241 4807 2.416747 TGTGTCAAAGGCGATGAAGAG 58.583 47.619 0.00 0.00 0.00 2.85
4242 4808 1.734465 GTGTCAAAGGCGATGAAGAGG 59.266 52.381 0.00 0.00 0.00 3.69
4243 4809 1.347707 TGTCAAAGGCGATGAAGAGGT 59.652 47.619 0.00 0.00 0.00 3.85
4244 4810 2.224523 TGTCAAAGGCGATGAAGAGGTT 60.225 45.455 0.00 0.00 0.00 3.50
4245 4811 2.160417 GTCAAAGGCGATGAAGAGGTTG 59.840 50.000 0.00 0.00 0.00 3.77
4246 4812 2.154462 CAAAGGCGATGAAGAGGTTGT 58.846 47.619 0.00 0.00 0.00 3.32
4247 4813 2.554032 CAAAGGCGATGAAGAGGTTGTT 59.446 45.455 0.00 0.00 0.00 2.83
4248 4814 1.813513 AGGCGATGAAGAGGTTGTTG 58.186 50.000 0.00 0.00 0.00 3.33
4249 4815 0.169009 GGCGATGAAGAGGTTGTTGC 59.831 55.000 0.00 0.00 0.00 4.17
4250 4816 0.179215 GCGATGAAGAGGTTGTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
4251 4817 1.148310 CGATGAAGAGGTTGTTGCGT 58.852 50.000 0.00 0.00 0.00 5.24
4252 4818 1.531149 CGATGAAGAGGTTGTTGCGTT 59.469 47.619 0.00 0.00 0.00 4.84
4253 4819 2.734606 CGATGAAGAGGTTGTTGCGTTA 59.265 45.455 0.00 0.00 0.00 3.18
4254 4820 3.181530 CGATGAAGAGGTTGTTGCGTTAG 60.182 47.826 0.00 0.00 0.00 2.34
4255 4821 3.188159 TGAAGAGGTTGTTGCGTTAGT 57.812 42.857 0.00 0.00 0.00 2.24
4256 4822 3.537580 TGAAGAGGTTGTTGCGTTAGTT 58.462 40.909 0.00 0.00 0.00 2.24
4257 4823 3.558418 TGAAGAGGTTGTTGCGTTAGTTC 59.442 43.478 0.00 0.00 0.00 3.01
4258 4824 2.132762 AGAGGTTGTTGCGTTAGTTCG 58.867 47.619 0.00 0.00 0.00 3.95
4259 4825 2.129607 GAGGTTGTTGCGTTAGTTCGA 58.870 47.619 0.00 0.00 0.00 3.71
4260 4826 2.132762 AGGTTGTTGCGTTAGTTCGAG 58.867 47.619 0.00 0.00 0.00 4.04
4261 4827 2.129607 GGTTGTTGCGTTAGTTCGAGA 58.870 47.619 0.00 0.00 0.00 4.04
4262 4828 2.155155 GGTTGTTGCGTTAGTTCGAGAG 59.845 50.000 0.00 0.00 0.00 3.20
4263 4829 2.060326 TGTTGCGTTAGTTCGAGAGG 57.940 50.000 0.00 0.00 0.00 3.69
4264 4830 1.336517 TGTTGCGTTAGTTCGAGAGGG 60.337 52.381 0.00 0.00 0.00 4.30
4265 4831 0.245539 TTGCGTTAGTTCGAGAGGGG 59.754 55.000 0.00 0.00 0.00 4.79
4266 4832 1.518792 GCGTTAGTTCGAGAGGGGC 60.519 63.158 0.00 0.00 0.00 5.80
4267 4833 1.226603 CGTTAGTTCGAGAGGGGCG 60.227 63.158 0.00 0.00 0.00 6.13
4268 4834 1.141234 GTTAGTTCGAGAGGGGCGG 59.859 63.158 0.00 0.00 0.00 6.13
4269 4835 2.718073 TTAGTTCGAGAGGGGCGGC 61.718 63.158 0.00 0.00 0.00 6.53
4270 4836 3.657038 TAGTTCGAGAGGGGCGGCT 62.657 63.158 9.56 0.00 0.00 5.52
4271 4837 2.274948 TAGTTCGAGAGGGGCGGCTA 62.275 60.000 9.56 0.00 0.00 3.93
4272 4838 2.123425 TTCGAGAGGGGCGGCTAT 60.123 61.111 9.56 0.00 0.00 2.97
4273 4839 2.498941 TTCGAGAGGGGCGGCTATG 61.499 63.158 9.56 0.00 0.00 2.23
4274 4840 3.996124 CGAGAGGGGCGGCTATGG 61.996 72.222 9.56 0.00 0.00 2.74
4275 4841 3.631046 GAGAGGGGCGGCTATGGG 61.631 72.222 9.56 0.00 0.00 4.00
4285 4851 4.968370 GCTATGGGCCCGTTTGTA 57.032 55.556 24.93 2.17 34.27 2.41
4286 4852 2.702847 GCTATGGGCCCGTTTGTAG 58.297 57.895 24.93 14.82 34.27 2.74
4287 4853 0.818040 GCTATGGGCCCGTTTGTAGG 60.818 60.000 24.93 7.07 34.27 3.18
4288 4854 0.834612 CTATGGGCCCGTTTGTAGGA 59.165 55.000 24.93 0.00 0.00 2.94
4289 4855 1.210967 CTATGGGCCCGTTTGTAGGAA 59.789 52.381 24.93 0.00 0.00 3.36
4290 4856 0.629058 ATGGGCCCGTTTGTAGGAAT 59.371 50.000 19.37 0.00 0.00 3.01
4291 4857 0.406361 TGGGCCCGTTTGTAGGAATT 59.594 50.000 19.37 0.00 0.00 2.17
4292 4858 1.203075 TGGGCCCGTTTGTAGGAATTT 60.203 47.619 19.37 0.00 0.00 1.82
4293 4859 1.897133 GGGCCCGTTTGTAGGAATTTT 59.103 47.619 5.69 0.00 0.00 1.82
4294 4860 2.353307 GGGCCCGTTTGTAGGAATTTTG 60.353 50.000 5.69 0.00 0.00 2.44
4295 4861 2.353307 GGCCCGTTTGTAGGAATTTTGG 60.353 50.000 0.00 0.00 0.00 3.28
4296 4862 2.559231 GCCCGTTTGTAGGAATTTTGGA 59.441 45.455 0.00 0.00 0.00 3.53
4297 4863 3.006003 GCCCGTTTGTAGGAATTTTGGAA 59.994 43.478 0.00 0.00 0.00 3.53
4298 4864 4.805219 CCCGTTTGTAGGAATTTTGGAAG 58.195 43.478 0.00 0.00 0.00 3.46
4299 4865 4.321675 CCCGTTTGTAGGAATTTTGGAAGG 60.322 45.833 0.00 0.00 0.00 3.46
4300 4866 4.521256 CCGTTTGTAGGAATTTTGGAAGGA 59.479 41.667 0.00 0.00 0.00 3.36
4301 4867 5.185056 CCGTTTGTAGGAATTTTGGAAGGAT 59.815 40.000 0.00 0.00 0.00 3.24
4302 4868 6.295067 CCGTTTGTAGGAATTTTGGAAGGATT 60.295 38.462 0.00 0.00 0.00 3.01
4303 4869 7.151976 CGTTTGTAGGAATTTTGGAAGGATTT 58.848 34.615 0.00 0.00 0.00 2.17
4304 4870 7.116233 CGTTTGTAGGAATTTTGGAAGGATTTG 59.884 37.037 0.00 0.00 0.00 2.32
4305 4871 7.847711 TTGTAGGAATTTTGGAAGGATTTGA 57.152 32.000 0.00 0.00 0.00 2.69
4306 4872 7.227049 TGTAGGAATTTTGGAAGGATTTGAC 57.773 36.000 0.00 0.00 0.00 3.18
4307 4873 5.391312 AGGAATTTTGGAAGGATTTGACG 57.609 39.130 0.00 0.00 0.00 4.35
4308 4874 5.076873 AGGAATTTTGGAAGGATTTGACGA 58.923 37.500 0.00 0.00 0.00 4.20
4309 4875 5.183904 AGGAATTTTGGAAGGATTTGACGAG 59.816 40.000 0.00 0.00 0.00 4.18
4310 4876 5.391312 AATTTTGGAAGGATTTGACGAGG 57.609 39.130 0.00 0.00 0.00 4.63
4311 4877 3.780804 TTTGGAAGGATTTGACGAGGA 57.219 42.857 0.00 0.00 0.00 3.71
4312 4878 3.334583 TTGGAAGGATTTGACGAGGAG 57.665 47.619 0.00 0.00 0.00 3.69
4313 4879 2.257207 TGGAAGGATTTGACGAGGAGT 58.743 47.619 0.00 0.00 0.00 3.85
4314 4880 2.028112 TGGAAGGATTTGACGAGGAGTG 60.028 50.000 0.00 0.00 0.00 3.51
4315 4881 2.233922 GGAAGGATTTGACGAGGAGTGA 59.766 50.000 0.00 0.00 0.00 3.41
4316 4882 3.516615 GAAGGATTTGACGAGGAGTGAG 58.483 50.000 0.00 0.00 0.00 3.51
4317 4883 2.808919 AGGATTTGACGAGGAGTGAGA 58.191 47.619 0.00 0.00 0.00 3.27
4318 4884 3.370104 AGGATTTGACGAGGAGTGAGAT 58.630 45.455 0.00 0.00 0.00 2.75
4319 4885 3.131933 AGGATTTGACGAGGAGTGAGATG 59.868 47.826 0.00 0.00 0.00 2.90
4320 4886 2.370281 TTTGACGAGGAGTGAGATGC 57.630 50.000 0.00 0.00 0.00 3.91
4321 4887 1.256812 TTGACGAGGAGTGAGATGCA 58.743 50.000 0.00 0.00 0.00 3.96
4322 4888 1.478631 TGACGAGGAGTGAGATGCAT 58.521 50.000 0.00 0.00 0.00 3.96
4323 4889 1.135721 TGACGAGGAGTGAGATGCATG 59.864 52.381 2.46 0.00 0.00 4.06
4324 4890 0.463204 ACGAGGAGTGAGATGCATGG 59.537 55.000 2.46 0.00 0.00 3.66
4325 4891 0.249784 CGAGGAGTGAGATGCATGGG 60.250 60.000 2.46 0.00 0.00 4.00
4326 4892 1.126488 GAGGAGTGAGATGCATGGGA 58.874 55.000 2.46 0.00 0.00 4.37
4327 4893 1.070445 GAGGAGTGAGATGCATGGGAG 59.930 57.143 2.46 0.00 0.00 4.30
4328 4894 0.108207 GGAGTGAGATGCATGGGAGG 59.892 60.000 2.46 0.00 0.00 4.30
4329 4895 0.835941 GAGTGAGATGCATGGGAGGT 59.164 55.000 2.46 0.00 0.00 3.85
4330 4896 0.835941 AGTGAGATGCATGGGAGGTC 59.164 55.000 2.46 0.00 0.00 3.85
4331 4897 0.543277 GTGAGATGCATGGGAGGTCA 59.457 55.000 2.46 0.00 0.00 4.02
4332 4898 1.142465 GTGAGATGCATGGGAGGTCAT 59.858 52.381 2.46 0.00 0.00 3.06
4333 4899 2.369860 GTGAGATGCATGGGAGGTCATA 59.630 50.000 2.46 0.00 0.00 2.15
4334 4900 3.047857 TGAGATGCATGGGAGGTCATAA 58.952 45.455 2.46 0.00 0.00 1.90
4335 4901 3.654321 TGAGATGCATGGGAGGTCATAAT 59.346 43.478 2.46 0.00 0.00 1.28
4336 4902 4.845796 TGAGATGCATGGGAGGTCATAATA 59.154 41.667 2.46 0.00 0.00 0.98
4337 4903 5.171339 AGATGCATGGGAGGTCATAATAC 57.829 43.478 2.46 0.00 0.00 1.89
4338 4904 4.848660 AGATGCATGGGAGGTCATAATACT 59.151 41.667 2.46 0.00 0.00 2.12
4339 4905 6.025539 AGATGCATGGGAGGTCATAATACTA 58.974 40.000 2.46 0.00 0.00 1.82
4340 4906 6.675746 AGATGCATGGGAGGTCATAATACTAT 59.324 38.462 2.46 0.00 0.00 2.12
4341 4907 6.299805 TGCATGGGAGGTCATAATACTATC 57.700 41.667 0.00 0.00 0.00 2.08
4342 4908 6.025539 TGCATGGGAGGTCATAATACTATCT 58.974 40.000 0.00 0.00 0.00 1.98
4343 4909 6.501805 TGCATGGGAGGTCATAATACTATCTT 59.498 38.462 0.00 0.00 0.00 2.40
4344 4910 6.820656 GCATGGGAGGTCATAATACTATCTTG 59.179 42.308 0.00 0.00 0.00 3.02
4345 4911 7.310671 GCATGGGAGGTCATAATACTATCTTGA 60.311 40.741 0.00 0.00 0.00 3.02
4346 4912 8.597167 CATGGGAGGTCATAATACTATCTTGAA 58.403 37.037 0.00 0.00 0.00 2.69
4347 4913 8.561536 TGGGAGGTCATAATACTATCTTGAAA 57.438 34.615 0.00 0.00 0.00 2.69
4348 4914 8.998814 TGGGAGGTCATAATACTATCTTGAAAA 58.001 33.333 0.00 0.00 0.00 2.29
4352 4918 9.289782 AGGTCATAATACTATCTTGAAAATGCC 57.710 33.333 0.00 0.00 0.00 4.40
4353 4919 9.289782 GGTCATAATACTATCTTGAAAATGCCT 57.710 33.333 0.00 0.00 0.00 4.75
4359 4925 9.692325 AATACTATCTTGAAAATGCCTTCTTCT 57.308 29.630 0.00 0.00 0.00 2.85
4360 4926 9.692325 ATACTATCTTGAAAATGCCTTCTTCTT 57.308 29.630 0.00 0.00 0.00 2.52
4361 4927 8.414629 ACTATCTTGAAAATGCCTTCTTCTTT 57.585 30.769 0.00 0.00 0.00 2.52
4362 4928 8.864087 ACTATCTTGAAAATGCCTTCTTCTTTT 58.136 29.630 0.00 0.00 0.00 2.27
4363 4929 9.702494 CTATCTTGAAAATGCCTTCTTCTTTTT 57.298 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.388654 ACTTTTCTCAAATCCATGACCACT 58.611 37.500 0.00 0.00 0.00 4.00
58 59 7.116233 CCGTGAACTTTTATTTCAAATTCCCAG 59.884 37.037 0.00 0.00 34.78 4.45
224 231 2.123077 CCCAACCCCTTTGTGGCA 60.123 61.111 0.00 0.00 32.71 4.92
386 436 4.447342 CCTTGGCCCCCGCAAGAT 62.447 66.667 0.00 0.00 43.02 2.40
570 646 2.032722 CGACGGATTGAACGTTTTTCCA 60.033 45.455 19.03 4.95 45.68 3.53
635 726 6.332735 AGCGCTAGATACATCTATTTGACA 57.667 37.500 8.99 0.00 38.60 3.58
639 789 7.815068 CCAAGTTAGCGCTAGATACATCTATTT 59.185 37.037 17.98 0.00 38.60 1.40
643 793 4.585162 ACCAAGTTAGCGCTAGATACATCT 59.415 41.667 17.98 0.00 40.86 2.90
656 806 4.991687 GGATGTATCTAGCACCAAGTTAGC 59.008 45.833 0.00 0.00 31.70 3.09
658 808 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
661 811 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
664 814 5.858381 TCTCAAATGGATGTATCTAGCACC 58.142 41.667 0.00 0.00 0.00 5.01
669 819 7.345653 AGGTTGTCTCTCAAATGGATGTATCTA 59.654 37.037 0.00 0.00 37.81 1.98
693 843 3.295973 TCTGAAAAACCTTGTCCCAAGG 58.704 45.455 18.98 18.98 43.05 3.61
820 988 3.059733 GCTGAAGAAATCGCTATGCTCTG 60.060 47.826 0.00 0.00 0.00 3.35
865 1038 4.737054 AGGTCATTCAGCGCAATTTTTAG 58.263 39.130 11.47 0.00 0.00 1.85
922 1096 1.333619 GCAAGCCAAACGAACTCAGAA 59.666 47.619 0.00 0.00 0.00 3.02
949 1123 3.998341 CCTTGGGCAATCAACAATTTCAG 59.002 43.478 0.00 0.00 0.00 3.02
1047 1221 3.044235 TCGATGATATCTTGCGGCAAT 57.956 42.857 16.80 4.88 0.00 3.56
1140 1314 1.412710 GTGAACTGCCGATCCTGGATA 59.587 52.381 9.66 0.00 0.00 2.59
1145 1319 0.107508 CATGGTGAACTGCCGATCCT 60.108 55.000 0.00 0.00 0.00 3.24
1151 1325 1.902918 TGTGCCATGGTGAACTGCC 60.903 57.895 14.67 0.00 0.00 4.85
1495 1672 2.040544 CGCCCGGAAGAAAGTGCAT 61.041 57.895 0.73 0.00 0.00 3.96
1527 1704 0.944311 CACTGAAGGAACCACCGACG 60.944 60.000 0.00 0.00 44.74 5.12
1789 1966 7.094975 GGAATCTATCTCCGTGATCCGATATAG 60.095 44.444 5.32 8.40 39.56 1.31
2006 2189 6.652481 GCTAGTCAATTGATGGCAGTATATGT 59.348 38.462 12.12 0.00 35.54 2.29
2020 2203 7.072177 TCGTAAATTTCTGGCTAGTCAATTG 57.928 36.000 0.00 0.00 0.00 2.32
2067 2250 1.065418 CGGGGGCTGAAATCTAACAGT 60.065 52.381 0.00 0.00 36.62 3.55
2238 2424 1.986757 GGCTCTCCACAGCTCCTCA 60.987 63.158 0.00 0.00 39.58 3.86
2684 2898 5.936686 ATTCACAACATCACAGAGACAAG 57.063 39.130 0.00 0.00 0.00 3.16
2694 2917 5.749588 CAGCTTTGTCAAATTCACAACATCA 59.250 36.000 0.00 0.00 33.42 3.07
2695 2918 5.978919 TCAGCTTTGTCAAATTCACAACATC 59.021 36.000 0.00 0.00 33.42 3.06
2827 3054 0.745468 GGGAGGCTACTGGAGTAACG 59.255 60.000 0.00 0.00 0.00 3.18
2835 3062 1.556911 ACATGAACAGGGAGGCTACTG 59.443 52.381 14.96 14.96 40.48 2.74
2870 3097 2.314549 TGTTCAGGGAAAATGGGGCTAT 59.685 45.455 0.00 0.00 0.00 2.97
2887 3117 6.638468 CAGCAAGTCATTAACTTTCCTTGTTC 59.362 38.462 0.00 0.00 46.26 3.18
2992 3223 2.119801 AACTTCTGCCAGTGCTATGG 57.880 50.000 3.62 3.62 43.72 2.74
3041 3284 4.973051 TGTGTGTGTGTTTAATTTCGATGC 59.027 37.500 0.00 0.00 0.00 3.91
3061 3304 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3062 3305 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3063 3306 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3064 3307 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3065 3308 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3066 3309 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3067 3310 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3068 3311 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
3069 3312 1.535028 ACTTGTGTGTGTGTGTGTGTG 59.465 47.619 0.00 0.00 0.00 3.82
3070 3313 1.890876 ACTTGTGTGTGTGTGTGTGT 58.109 45.000 0.00 0.00 0.00 3.72
3071 3314 2.225255 TCAACTTGTGTGTGTGTGTGTG 59.775 45.455 0.00 0.00 0.00 3.82
3072 3315 2.499197 TCAACTTGTGTGTGTGTGTGT 58.501 42.857 0.00 0.00 0.00 3.72
3073 3316 3.550950 TTCAACTTGTGTGTGTGTGTG 57.449 42.857 0.00 0.00 0.00 3.82
3074 3317 3.316588 TGTTTCAACTTGTGTGTGTGTGT 59.683 39.130 0.00 0.00 0.00 3.72
3075 3318 3.668191 GTGTTTCAACTTGTGTGTGTGTG 59.332 43.478 0.00 0.00 0.00 3.82
3078 3321 3.611530 GCAGTGTTTCAACTTGTGTGTGT 60.612 43.478 0.00 0.00 0.00 3.72
3085 3328 2.937469 TGGTGCAGTGTTTCAACTTG 57.063 45.000 0.00 0.00 0.00 3.16
3096 3339 0.685097 AACACGGAGTATGGTGCAGT 59.315 50.000 0.00 0.00 41.61 4.40
3108 3351 2.623878 TTTGCTGACCTAAACACGGA 57.376 45.000 0.00 0.00 0.00 4.69
3109 3352 2.875933 TCTTTTGCTGACCTAAACACGG 59.124 45.455 0.00 0.00 0.00 4.94
3110 3353 3.607078 GCTCTTTTGCTGACCTAAACACG 60.607 47.826 0.00 0.00 0.00 4.49
3124 3375 0.324091 AGGATGCCCCTGCTCTTTTG 60.324 55.000 0.00 0.00 45.61 2.44
3186 3440 6.925718 TGACATGATTTTATTGCGGTCAAAAA 59.074 30.769 0.00 0.00 35.56 1.94
3187 3441 6.450545 TGACATGATTTTATTGCGGTCAAAA 58.549 32.000 0.00 0.00 35.56 2.44
3188 3442 6.018589 TGACATGATTTTATTGCGGTCAAA 57.981 33.333 0.00 0.00 35.56 2.69
3189 3443 5.635417 TGACATGATTTTATTGCGGTCAA 57.365 34.783 0.00 0.00 36.51 3.18
3190 3444 5.833406 ATGACATGATTTTATTGCGGTCA 57.167 34.783 0.00 0.00 38.26 4.02
3191 3445 7.148918 GCAATATGACATGATTTTATTGCGGTC 60.149 37.037 20.39 0.00 42.75 4.79
3192 3446 6.642131 GCAATATGACATGATTTTATTGCGGT 59.358 34.615 20.39 0.00 42.75 5.68
3193 3447 7.041187 GCAATATGACATGATTTTATTGCGG 57.959 36.000 20.39 4.34 42.75 5.69
3196 3450 8.492748 GCCTTGCAATATGACATGATTTTATTG 58.507 33.333 0.00 8.54 34.76 1.90
3197 3451 8.426489 AGCCTTGCAATATGACATGATTTTATT 58.574 29.630 0.00 0.00 0.00 1.40
3198 3452 7.870954 CAGCCTTGCAATATGACATGATTTTAT 59.129 33.333 0.00 0.00 0.00 1.40
3213 3467 4.434545 AGATGATCTACAGCCTTGCAAT 57.565 40.909 0.00 0.00 35.25 3.56
3232 3486 8.190326 TGTTCTAAGACAAAGGATACAGAAGA 57.810 34.615 0.00 0.00 41.41 2.87
3234 3488 6.874134 GCTGTTCTAAGACAAAGGATACAGAA 59.126 38.462 0.00 0.00 41.41 3.02
3247 3529 5.948992 ACAAAAGGATGCTGTTCTAAGAC 57.051 39.130 0.00 0.00 0.00 3.01
3267 3549 3.023119 TCCTTTTCTCTGCTGCAAAACA 58.977 40.909 3.02 0.00 0.00 2.83
3357 3639 2.436417 CCGAATCAGGTTGTCCACATT 58.564 47.619 0.00 0.00 35.89 2.71
3359 3641 0.605319 GCCGAATCAGGTTGTCCACA 60.605 55.000 0.00 0.00 35.89 4.17
3410 3692 2.260743 GAAGCCCAAGCAGCAAGC 59.739 61.111 0.00 0.00 43.56 4.01
3411 3693 1.919956 CTCGAAGCCCAAGCAGCAAG 61.920 60.000 0.00 0.00 43.56 4.01
3412 3694 1.968017 CTCGAAGCCCAAGCAGCAA 60.968 57.895 0.00 0.00 43.56 3.91
3413 3695 2.359107 CTCGAAGCCCAAGCAGCA 60.359 61.111 0.00 0.00 43.56 4.41
3414 3696 2.359230 ACTCGAAGCCCAAGCAGC 60.359 61.111 0.00 0.00 43.56 5.25
3415 3697 2.684843 GCACTCGAAGCCCAAGCAG 61.685 63.158 0.00 0.00 43.56 4.24
3416 3698 2.669569 GCACTCGAAGCCCAAGCA 60.670 61.111 0.00 0.00 43.56 3.91
3417 3699 2.359230 AGCACTCGAAGCCCAAGC 60.359 61.111 5.95 0.00 40.32 4.01
3418 3700 1.004560 TCAGCACTCGAAGCCCAAG 60.005 57.895 5.95 0.00 0.00 3.61
3419 3701 1.301716 GTCAGCACTCGAAGCCCAA 60.302 57.895 5.95 0.00 0.00 4.12
3420 3702 2.343758 GTCAGCACTCGAAGCCCA 59.656 61.111 5.95 0.00 0.00 5.36
3421 3703 1.739562 CTGTCAGCACTCGAAGCCC 60.740 63.158 5.95 0.00 0.00 5.19
3422 3704 0.601311 AACTGTCAGCACTCGAAGCC 60.601 55.000 0.00 0.00 0.00 4.35
3423 3705 0.787183 GAACTGTCAGCACTCGAAGC 59.213 55.000 0.00 1.47 0.00 3.86
3424 3706 1.269778 TGGAACTGTCAGCACTCGAAG 60.270 52.381 0.00 0.00 0.00 3.79
3425 3707 0.750249 TGGAACTGTCAGCACTCGAA 59.250 50.000 0.00 0.00 0.00 3.71
3426 3708 0.032130 GTGGAACTGTCAGCACTCGA 59.968 55.000 0.00 0.00 0.00 4.04
3444 3751 0.818040 GGCGGTTGTTGTCAGGAAGT 60.818 55.000 0.00 0.00 0.00 3.01
3467 3774 4.404654 CCTTTGGCAAGTCCGCGC 62.405 66.667 0.00 0.00 37.80 6.86
3468 3775 1.791103 TTTCCTTTGGCAAGTCCGCG 61.791 55.000 0.00 0.00 37.80 6.46
3469 3776 0.387565 TTTTCCTTTGGCAAGTCCGC 59.612 50.000 0.00 0.00 37.80 5.54
3486 3859 3.694072 TGCCATTACGAGCTGCTATTTTT 59.306 39.130 0.15 0.00 0.00 1.94
3487 3860 3.065371 GTGCCATTACGAGCTGCTATTTT 59.935 43.478 0.15 0.00 0.00 1.82
3497 3870 1.093972 TGCCATTGTGCCATTACGAG 58.906 50.000 0.00 0.00 0.00 4.18
3513 3893 5.065218 CCGTAATGCTCCTATTTATGATGCC 59.935 44.000 0.00 0.00 0.00 4.40
3515 3895 7.173218 ACAACCGTAATGCTCCTATTTATGATG 59.827 37.037 0.00 0.00 0.00 3.07
3523 3903 4.689612 ATCACAACCGTAATGCTCCTAT 57.310 40.909 0.00 0.00 0.00 2.57
3540 3920 4.761739 TGACAGAATGAGTTGGGAAATCAC 59.238 41.667 0.00 0.00 38.42 3.06
3548 3928 4.898829 TGTTGTTGACAGAATGAGTTGG 57.101 40.909 0.00 0.00 39.69 3.77
3594 3974 2.863153 GCACTTACACAGCGCCTG 59.137 61.111 2.29 4.31 37.52 4.85
3600 3980 2.306383 TGCACACGCACTTACACAG 58.694 52.632 0.00 0.00 45.36 3.66
3610 3990 4.518217 GATTACAACATAGATGCACACGC 58.482 43.478 0.00 0.00 39.24 5.34
3612 3992 4.570772 ACCGATTACAACATAGATGCACAC 59.429 41.667 0.00 0.00 0.00 3.82
3614 3994 4.570772 ACACCGATTACAACATAGATGCAC 59.429 41.667 0.00 0.00 0.00 4.57
3617 3997 6.049149 AGGAACACCGATTACAACATAGATG 58.951 40.000 0.00 0.00 0.00 2.90
3618 3998 6.127168 TGAGGAACACCGATTACAACATAGAT 60.127 38.462 0.00 0.00 0.00 1.98
3667 4047 1.880027 AGTGTTGAAAGCAATCGGGAC 59.120 47.619 0.00 0.00 36.22 4.46
3668 4048 2.270352 AGTGTTGAAAGCAATCGGGA 57.730 45.000 0.00 0.00 36.22 5.14
3669 4049 2.034558 ACAAGTGTTGAAAGCAATCGGG 59.965 45.455 0.00 0.00 36.22 5.14
3672 4052 5.807011 ACTCAAACAAGTGTTGAAAGCAATC 59.193 36.000 0.00 0.00 38.44 2.67
3673 4053 5.723295 ACTCAAACAAGTGTTGAAAGCAAT 58.277 33.333 0.00 0.00 38.44 3.56
3677 4057 6.083630 TCGAAACTCAAACAAGTGTTGAAAG 58.916 36.000 0.00 0.00 38.44 2.62
3681 4061 6.683090 TTTTCGAAACTCAAACAAGTGTTG 57.317 33.333 10.79 0.00 38.44 3.33
3682 4062 7.114388 GTCTTTTTCGAAACTCAAACAAGTGTT 59.886 33.333 10.79 0.00 40.50 3.32
3683 4063 6.581166 GTCTTTTTCGAAACTCAAACAAGTGT 59.419 34.615 10.79 0.00 0.00 3.55
3684 4064 6.236941 CGTCTTTTTCGAAACTCAAACAAGTG 60.237 38.462 10.79 4.03 0.00 3.16
3687 4067 4.555747 GCGTCTTTTTCGAAACTCAAACAA 59.444 37.500 10.79 0.00 0.00 2.83
3689 4069 3.481028 GGCGTCTTTTTCGAAACTCAAAC 59.519 43.478 10.79 4.31 0.00 2.93
3693 4073 1.933457 CGGCGTCTTTTTCGAAACTC 58.067 50.000 10.79 0.00 0.00 3.01
3702 4083 4.322385 GGCAACGCGGCGTCTTTT 62.322 61.111 29.53 10.38 39.99 2.27
3714 4095 0.442699 GATCGAGGAACAACGGCAAC 59.557 55.000 0.00 0.00 0.00 4.17
3734 4281 3.679025 GCAGATGGAGATGAATGACGATC 59.321 47.826 0.00 0.00 0.00 3.69
3735 4282 3.324268 AGCAGATGGAGATGAATGACGAT 59.676 43.478 0.00 0.00 0.00 3.73
3736 4283 2.697229 AGCAGATGGAGATGAATGACGA 59.303 45.455 0.00 0.00 0.00 4.20
3737 4284 3.058450 GAGCAGATGGAGATGAATGACG 58.942 50.000 0.00 0.00 0.00 4.35
3738 4285 4.059511 CTGAGCAGATGGAGATGAATGAC 58.940 47.826 0.00 0.00 0.00 3.06
3739 4286 3.965347 TCTGAGCAGATGGAGATGAATGA 59.035 43.478 0.00 0.00 31.41 2.57
3740 4287 4.338379 TCTGAGCAGATGGAGATGAATG 57.662 45.455 0.00 0.00 31.41 2.67
3741 4288 5.124645 GTTTCTGAGCAGATGGAGATGAAT 58.875 41.667 0.37 0.00 37.29 2.57
3742 4289 4.511527 GTTTCTGAGCAGATGGAGATGAA 58.488 43.478 0.37 0.00 37.29 2.57
3780 4327 3.490759 CAGCGCGGTGGACATCAC 61.491 66.667 29.65 0.00 45.34 3.06
3819 4366 5.403246 CCATTCATCGTATAGACAGTAGGC 58.597 45.833 0.00 0.00 0.00 3.93
3821 4368 5.184096 AGGCCATTCATCGTATAGACAGTAG 59.816 44.000 5.01 0.00 0.00 2.57
3822 4369 5.048013 CAGGCCATTCATCGTATAGACAGTA 60.048 44.000 5.01 0.00 0.00 2.74
3823 4370 3.898123 AGGCCATTCATCGTATAGACAGT 59.102 43.478 5.01 0.00 0.00 3.55
3824 4371 4.240888 CAGGCCATTCATCGTATAGACAG 58.759 47.826 5.01 0.00 0.00 3.51
3833 4380 0.392863 TGTCACCAGGCCATTCATCG 60.393 55.000 5.01 0.00 0.00 3.84
3886 4437 3.827898 GGGACCTCTGCCGACGAG 61.828 72.222 0.00 0.00 0.00 4.18
3890 4441 3.846405 AACCTGGGACCTCTGCCGA 62.846 63.158 0.00 0.00 0.00 5.54
3891 4442 3.322466 AACCTGGGACCTCTGCCG 61.322 66.667 0.00 0.00 0.00 5.69
3917 4468 0.955919 GAAAGGTTCCAGGCCGTCTG 60.956 60.000 0.00 0.00 43.00 3.51
3919 4470 2.033194 CGAAAGGTTCCAGGCCGTC 61.033 63.158 0.00 0.00 0.00 4.79
3920 4471 2.032071 CGAAAGGTTCCAGGCCGT 59.968 61.111 0.00 0.00 0.00 5.68
3921 4472 2.032071 ACGAAAGGTTCCAGGCCG 59.968 61.111 0.00 0.00 0.00 6.13
3923 4474 1.157585 GAAGACGAAAGGTTCCAGGC 58.842 55.000 0.00 0.00 0.00 4.85
3925 4476 2.841442 AGGAAGACGAAAGGTTCCAG 57.159 50.000 3.32 0.00 45.69 3.86
3927 4478 2.031069 GCAAAGGAAGACGAAAGGTTCC 60.031 50.000 0.00 0.00 44.40 3.62
3928 4479 2.616842 TGCAAAGGAAGACGAAAGGTTC 59.383 45.455 0.00 0.00 0.00 3.62
3929 4480 2.618709 CTGCAAAGGAAGACGAAAGGTT 59.381 45.455 0.00 0.00 0.00 3.50
3930 4481 2.222027 CTGCAAAGGAAGACGAAAGGT 58.778 47.619 0.00 0.00 0.00 3.50
3931 4482 1.068954 GCTGCAAAGGAAGACGAAAGG 60.069 52.381 0.00 0.00 0.00 3.11
3932 4483 1.603802 TGCTGCAAAGGAAGACGAAAG 59.396 47.619 0.00 0.00 0.00 2.62
3934 4485 1.603802 CTTGCTGCAAAGGAAGACGAA 59.396 47.619 16.74 0.00 39.19 3.85
3935 4486 1.229428 CTTGCTGCAAAGGAAGACGA 58.771 50.000 16.74 0.00 39.19 4.20
3936 4487 0.386478 GCTTGCTGCAAAGGAAGACG 60.386 55.000 16.74 3.20 39.19 4.18
3937 4488 3.486285 GCTTGCTGCAAAGGAAGAC 57.514 52.632 16.74 0.13 39.19 3.01
3996 4552 4.143742 GCTTTCTTGAAATGAAGAAACGCG 60.144 41.667 3.53 3.53 43.72 6.01
4027 4583 3.374402 CACGTCCGCCTCACCTCT 61.374 66.667 0.00 0.00 0.00 3.69
4065 4627 1.448540 CCTGCACTCGATGACACCC 60.449 63.158 0.00 0.00 0.00 4.61
4165 4731 0.676782 GTGCCTGCGTTTGTATCCCT 60.677 55.000 0.00 0.00 0.00 4.20
4191 4757 1.986757 GCACCCTCCTCTCTGCTCA 60.987 63.158 0.00 0.00 0.00 4.26
4229 4795 1.813513 CAACAACCTCTTCATCGCCT 58.186 50.000 0.00 0.00 0.00 5.52
4235 4801 3.188159 ACTAACGCAACAACCTCTTCA 57.812 42.857 0.00 0.00 0.00 3.02
4236 4802 3.362693 CGAACTAACGCAACAACCTCTTC 60.363 47.826 0.00 0.00 0.00 2.87
4237 4803 2.542595 CGAACTAACGCAACAACCTCTT 59.457 45.455 0.00 0.00 0.00 2.85
4238 4804 2.132762 CGAACTAACGCAACAACCTCT 58.867 47.619 0.00 0.00 0.00 3.69
4239 4805 2.129607 TCGAACTAACGCAACAACCTC 58.870 47.619 0.00 0.00 0.00 3.85
4240 4806 2.132762 CTCGAACTAACGCAACAACCT 58.867 47.619 0.00 0.00 0.00 3.50
4241 4807 2.129607 TCTCGAACTAACGCAACAACC 58.870 47.619 0.00 0.00 0.00 3.77
4242 4808 2.155155 CCTCTCGAACTAACGCAACAAC 59.845 50.000 0.00 0.00 0.00 3.32
4243 4809 2.400399 CCTCTCGAACTAACGCAACAA 58.600 47.619 0.00 0.00 0.00 2.83
4244 4810 1.336517 CCCTCTCGAACTAACGCAACA 60.337 52.381 0.00 0.00 0.00 3.33
4245 4811 1.347320 CCCTCTCGAACTAACGCAAC 58.653 55.000 0.00 0.00 0.00 4.17
4246 4812 0.245539 CCCCTCTCGAACTAACGCAA 59.754 55.000 0.00 0.00 0.00 4.85
4247 4813 1.888018 CCCCTCTCGAACTAACGCA 59.112 57.895 0.00 0.00 0.00 5.24
4248 4814 1.518792 GCCCCTCTCGAACTAACGC 60.519 63.158 0.00 0.00 0.00 4.84
4249 4815 1.226603 CGCCCCTCTCGAACTAACG 60.227 63.158 0.00 0.00 0.00 3.18
4250 4816 1.141234 CCGCCCCTCTCGAACTAAC 59.859 63.158 0.00 0.00 0.00 2.34
4251 4817 2.718073 GCCGCCCCTCTCGAACTAA 61.718 63.158 0.00 0.00 0.00 2.24
4252 4818 2.274948 TAGCCGCCCCTCTCGAACTA 62.275 60.000 0.00 0.00 0.00 2.24
4253 4819 2.930777 ATAGCCGCCCCTCTCGAACT 62.931 60.000 0.00 0.00 0.00 3.01
4254 4820 2.499827 ATAGCCGCCCCTCTCGAAC 61.500 63.158 0.00 0.00 0.00 3.95
4255 4821 2.123425 ATAGCCGCCCCTCTCGAA 60.123 61.111 0.00 0.00 0.00 3.71
4256 4822 2.912542 CATAGCCGCCCCTCTCGA 60.913 66.667 0.00 0.00 0.00 4.04
4257 4823 3.996124 CCATAGCCGCCCCTCTCG 61.996 72.222 0.00 0.00 0.00 4.04
4258 4824 3.631046 CCCATAGCCGCCCCTCTC 61.631 72.222 0.00 0.00 0.00 3.20
4268 4834 0.818040 CCTACAAACGGGCCCATAGC 60.818 60.000 24.92 0.00 42.60 2.97
4269 4835 0.834612 TCCTACAAACGGGCCCATAG 59.165 55.000 24.92 14.00 0.00 2.23
4270 4836 1.287217 TTCCTACAAACGGGCCCATA 58.713 50.000 24.92 4.54 0.00 2.74
4271 4837 0.629058 ATTCCTACAAACGGGCCCAT 59.371 50.000 24.92 1.91 0.00 4.00
4272 4838 0.406361 AATTCCTACAAACGGGCCCA 59.594 50.000 24.92 0.00 0.00 5.36
4273 4839 1.552578 AAATTCCTACAAACGGGCCC 58.447 50.000 13.57 13.57 0.00 5.80
4274 4840 2.353307 CCAAAATTCCTACAAACGGGCC 60.353 50.000 0.00 0.00 0.00 5.80
4275 4841 2.559231 TCCAAAATTCCTACAAACGGGC 59.441 45.455 0.00 0.00 0.00 6.13
4276 4842 4.321675 CCTTCCAAAATTCCTACAAACGGG 60.322 45.833 0.00 0.00 0.00 5.28
4277 4843 4.521256 TCCTTCCAAAATTCCTACAAACGG 59.479 41.667 0.00 0.00 0.00 4.44
4278 4844 5.699097 TCCTTCCAAAATTCCTACAAACG 57.301 39.130 0.00 0.00 0.00 3.60
4279 4845 8.147704 TCAAATCCTTCCAAAATTCCTACAAAC 58.852 33.333 0.00 0.00 0.00 2.93
4280 4846 8.147704 GTCAAATCCTTCCAAAATTCCTACAAA 58.852 33.333 0.00 0.00 0.00 2.83
4281 4847 7.523052 CGTCAAATCCTTCCAAAATTCCTACAA 60.523 37.037 0.00 0.00 0.00 2.41
4282 4848 6.072175 CGTCAAATCCTTCCAAAATTCCTACA 60.072 38.462 0.00 0.00 0.00 2.74
4283 4849 6.150474 TCGTCAAATCCTTCCAAAATTCCTAC 59.850 38.462 0.00 0.00 0.00 3.18
4284 4850 6.242396 TCGTCAAATCCTTCCAAAATTCCTA 58.758 36.000 0.00 0.00 0.00 2.94
4285 4851 5.076873 TCGTCAAATCCTTCCAAAATTCCT 58.923 37.500 0.00 0.00 0.00 3.36
4286 4852 5.385509 TCGTCAAATCCTTCCAAAATTCC 57.614 39.130 0.00 0.00 0.00 3.01
4287 4853 5.183140 TCCTCGTCAAATCCTTCCAAAATTC 59.817 40.000 0.00 0.00 0.00 2.17
4288 4854 5.076873 TCCTCGTCAAATCCTTCCAAAATT 58.923 37.500 0.00 0.00 0.00 1.82
4289 4855 4.662278 TCCTCGTCAAATCCTTCCAAAAT 58.338 39.130 0.00 0.00 0.00 1.82
4290 4856 4.072131 CTCCTCGTCAAATCCTTCCAAAA 58.928 43.478 0.00 0.00 0.00 2.44
4291 4857 3.072476 ACTCCTCGTCAAATCCTTCCAAA 59.928 43.478 0.00 0.00 0.00 3.28
4292 4858 2.637872 ACTCCTCGTCAAATCCTTCCAA 59.362 45.455 0.00 0.00 0.00 3.53
4293 4859 2.028112 CACTCCTCGTCAAATCCTTCCA 60.028 50.000 0.00 0.00 0.00 3.53
4294 4860 2.233922 TCACTCCTCGTCAAATCCTTCC 59.766 50.000 0.00 0.00 0.00 3.46
4295 4861 3.193691 TCTCACTCCTCGTCAAATCCTTC 59.806 47.826 0.00 0.00 0.00 3.46
4296 4862 3.165875 TCTCACTCCTCGTCAAATCCTT 58.834 45.455 0.00 0.00 0.00 3.36
4297 4863 2.808919 TCTCACTCCTCGTCAAATCCT 58.191 47.619 0.00 0.00 0.00 3.24
4298 4864 3.452474 CATCTCACTCCTCGTCAAATCC 58.548 50.000 0.00 0.00 0.00 3.01
4299 4865 2.863137 GCATCTCACTCCTCGTCAAATC 59.137 50.000 0.00 0.00 0.00 2.17
4300 4866 2.234661 TGCATCTCACTCCTCGTCAAAT 59.765 45.455 0.00 0.00 0.00 2.32
4301 4867 1.618343 TGCATCTCACTCCTCGTCAAA 59.382 47.619 0.00 0.00 0.00 2.69
4302 4868 1.256812 TGCATCTCACTCCTCGTCAA 58.743 50.000 0.00 0.00 0.00 3.18
4303 4869 1.135721 CATGCATCTCACTCCTCGTCA 59.864 52.381 0.00 0.00 0.00 4.35
4304 4870 1.537776 CCATGCATCTCACTCCTCGTC 60.538 57.143 0.00 0.00 0.00 4.20
4305 4871 0.463204 CCATGCATCTCACTCCTCGT 59.537 55.000 0.00 0.00 0.00 4.18
4306 4872 0.249784 CCCATGCATCTCACTCCTCG 60.250 60.000 0.00 0.00 0.00 4.63
4307 4873 1.070445 CTCCCATGCATCTCACTCCTC 59.930 57.143 0.00 0.00 0.00 3.71
4308 4874 1.129917 CTCCCATGCATCTCACTCCT 58.870 55.000 0.00 0.00 0.00 3.69
4309 4875 0.108207 CCTCCCATGCATCTCACTCC 59.892 60.000 0.00 0.00 0.00 3.85
4310 4876 0.835941 ACCTCCCATGCATCTCACTC 59.164 55.000 0.00 0.00 0.00 3.51
4311 4877 0.835941 GACCTCCCATGCATCTCACT 59.164 55.000 0.00 0.00 0.00 3.41
4312 4878 0.543277 TGACCTCCCATGCATCTCAC 59.457 55.000 0.00 0.00 0.00 3.51
4313 4879 1.514983 ATGACCTCCCATGCATCTCA 58.485 50.000 0.00 0.00 0.00 3.27
4314 4880 3.777106 TTATGACCTCCCATGCATCTC 57.223 47.619 0.00 0.00 0.00 2.75
4315 4881 4.848660 AGTATTATGACCTCCCATGCATCT 59.151 41.667 0.00 0.00 0.00 2.90
4316 4882 5.171339 AGTATTATGACCTCCCATGCATC 57.829 43.478 0.00 0.00 0.00 3.91
4317 4883 6.675746 AGATAGTATTATGACCTCCCATGCAT 59.324 38.462 0.00 0.00 0.00 3.96
4318 4884 6.025539 AGATAGTATTATGACCTCCCATGCA 58.974 40.000 0.00 0.00 0.00 3.96
4319 4885 6.552445 AGATAGTATTATGACCTCCCATGC 57.448 41.667 0.00 0.00 0.00 4.06
4320 4886 8.138928 TCAAGATAGTATTATGACCTCCCATG 57.861 38.462 0.00 0.00 0.00 3.66
4321 4887 8.742125 TTCAAGATAGTATTATGACCTCCCAT 57.258 34.615 0.00 0.00 0.00 4.00
4322 4888 8.561536 TTTCAAGATAGTATTATGACCTCCCA 57.438 34.615 0.00 0.00 0.00 4.37
4326 4892 9.289782 GGCATTTTCAAGATAGTATTATGACCT 57.710 33.333 0.00 0.00 0.00 3.85
4327 4893 9.289782 AGGCATTTTCAAGATAGTATTATGACC 57.710 33.333 0.00 0.00 0.00 4.02
4333 4899 9.692325 AGAAGAAGGCATTTTCAAGATAGTATT 57.308 29.630 8.13 0.00 0.00 1.89
4334 4900 9.692325 AAGAAGAAGGCATTTTCAAGATAGTAT 57.308 29.630 8.13 0.00 0.00 2.12
4335 4901 9.520515 AAAGAAGAAGGCATTTTCAAGATAGTA 57.479 29.630 8.13 0.00 0.00 1.82
4336 4902 8.414629 AAAGAAGAAGGCATTTTCAAGATAGT 57.585 30.769 8.13 0.00 0.00 2.12
4337 4903 9.702494 AAAAAGAAGAAGGCATTTTCAAGATAG 57.298 29.630 8.13 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.