Multiple sequence alignment - TraesCS5B01G253300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G253300 chr5B 100.000 5217 0 0 1 5217 436162289 436167505 0.000000e+00 9635
1 TraesCS5B01G253300 chr5B 88.615 1985 199 14 628 2602 436152766 436154733 0.000000e+00 2388
2 TraesCS5B01G253300 chr5B 90.525 1657 144 4 628 2282 436096036 436097681 0.000000e+00 2178
3 TraesCS5B01G253300 chr5B 86.731 1982 233 16 627 2602 436209202 436211159 0.000000e+00 2176
4 TraesCS5B01G253300 chr5B 96.296 243 4 2 296 533 75803151 75803393 1.360000e-105 394
5 TraesCS5B01G253300 chr5B 97.727 132 3 0 4430 4561 660144714 660144583 1.460000e-55 228
6 TraesCS5B01G253300 chr5D 95.984 3735 102 17 605 4310 368244585 368248300 0.000000e+00 6023
7 TraesCS5B01G253300 chr5D 89.248 1981 197 8 628 2602 368078658 368080628 0.000000e+00 2464
8 TraesCS5B01G253300 chr5D 89.018 1985 194 13 628 2602 368029529 368031499 0.000000e+00 2436
9 TraesCS5B01G253300 chr5D 86.471 1981 234 21 627 2602 368286074 368288025 0.000000e+00 2143
10 TraesCS5B01G253300 chr5D 79.514 1645 294 26 628 2252 367990886 367992507 0.000000e+00 1131
11 TraesCS5B01G253300 chr5D 79.848 1583 265 34 690 2242 367996377 367997935 0.000000e+00 1107
12 TraesCS5B01G253300 chr5D 91.990 412 30 3 4561 4972 368248346 368248754 4.530000e-160 575
13 TraesCS5B01G253300 chr5D 94.371 302 11 3 3 299 368244295 368244595 4.760000e-125 459
14 TraesCS5B01G253300 chr5D 95.618 251 4 4 289 533 551353328 551353079 3.790000e-106 396
15 TraesCS5B01G253300 chr5D 94.821 251 6 4 289 533 551389673 551389424 8.200000e-103 385
16 TraesCS5B01G253300 chr5D 87.727 220 9 9 4998 5217 368248817 368249018 1.880000e-59 241
17 TraesCS5B01G253300 chr5D 91.071 56 3 1 4335 4388 368248283 368248338 2.010000e-09 75
18 TraesCS5B01G253300 chr5A 88.603 1983 207 12 629 2604 470076591 470078561 0.000000e+00 2392
19 TraesCS5B01G253300 chr5A 86.076 1975 246 16 627 2597 470170471 470172420 0.000000e+00 2097
20 TraesCS5B01G253300 chr5A 79.877 1630 279 30 1001 2601 469898891 469900500 0.000000e+00 1147
21 TraesCS5B01G253300 chr2B 97.083 240 5 1 296 533 717485266 717485027 2.260000e-108 403
22 TraesCS5B01G253300 chr2B 96.311 244 3 3 295 533 263817998 263817756 3.790000e-106 396
23 TraesCS5B01G253300 chr2B 99.225 129 1 0 4432 4560 551567867 551567995 3.140000e-57 233
24 TraesCS5B01G253300 chr2B 98.450 129 2 0 4432 4560 174798414 174798286 1.460000e-55 228
25 TraesCS5B01G253300 chr2B 96.154 78 1 2 538 614 144563153 144563077 5.480000e-25 126
26 TraesCS5B01G253300 chr7B 96.708 243 2 3 296 533 457411037 457410796 2.930000e-107 399
27 TraesCS5B01G253300 chr7B 96.296 243 3 3 296 533 382524216 382523975 1.360000e-105 394
28 TraesCS5B01G253300 chr7B 95.161 248 7 4 291 533 47498577 47498824 2.280000e-103 387
29 TraesCS5B01G253300 chr7B 100.000 127 0 0 4434 4560 705715677 705715803 8.730000e-58 235
30 TraesCS5B01G253300 chr4D 95.902 244 4 3 296 533 472668147 472667904 1.760000e-104 390
31 TraesCS5B01G253300 chr6D 89.316 234 21 4 2634 2864 440639726 440639494 1.840000e-74 291
32 TraesCS5B01G253300 chr4B 88.066 243 25 2 2623 2864 368106290 368106051 8.550000e-73 285
33 TraesCS5B01G253300 chr4B 98.438 128 2 0 4434 4561 49713180 49713307 5.260000e-55 226
34 TraesCS5B01G253300 chr6A 87.149 249 28 4 2619 2864 588601131 588600884 3.980000e-71 279
35 TraesCS5B01G253300 chr6A 96.154 78 1 2 535 611 539226472 539226548 5.480000e-25 126
36 TraesCS5B01G253300 chr2D 87.500 240 27 3 2623 2861 645896534 645896771 1.850000e-69 274
37 TraesCS5B01G253300 chr2D 97.710 131 3 0 4431 4561 622315787 622315657 5.260000e-55 226
38 TraesCS5B01G253300 chr1D 85.484 248 32 4 2615 2861 12232117 12232361 6.700000e-64 255
39 TraesCS5B01G253300 chr1D 96.154 78 1 2 538 614 375936980 375936904 5.480000e-25 126
40 TraesCS5B01G253300 chrUn 85.306 245 29 6 2623 2864 221305029 221304789 4.030000e-61 246
41 TraesCS5B01G253300 chrUn 85.306 245 29 6 2623 2864 245445442 245445202 4.030000e-61 246
42 TraesCS5B01G253300 chrUn 85.306 245 29 6 2623 2864 245457791 245457551 4.030000e-61 246
43 TraesCS5B01G253300 chr6B 99.225 129 1 0 4433 4561 101745914 101745786 3.140000e-57 233
44 TraesCS5B01G253300 chr6B 96.154 78 1 2 538 614 673945192 673945116 5.480000e-25 126
45 TraesCS5B01G253300 chr3B 99.213 127 1 0 4434 4560 62947365 62947239 4.060000e-56 230
46 TraesCS5B01G253300 chr3B 81.395 258 36 8 2606 2861 685258176 685258423 3.190000e-47 200
47 TraesCS5B01G253300 chr3D 96.992 133 4 0 4432 4564 313287004 313286872 1.890000e-54 224
48 TraesCS5B01G253300 chr3D 96.154 78 1 2 535 611 135250610 135250686 5.480000e-25 126
49 TraesCS5B01G253300 chr1B 96.154 78 1 2 538 614 328150712 328150636 5.480000e-25 126
50 TraesCS5B01G253300 chr1B 96.154 78 1 2 535 611 396602153 396602229 5.480000e-25 126
51 TraesCS5B01G253300 chr1B 96.154 78 1 2 538 614 530472324 530472248 5.480000e-25 126
52 TraesCS5B01G253300 chr1B 96.154 78 1 2 535 611 605464969 605465045 5.480000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G253300 chr5B 436162289 436167505 5216 False 9635.0 9635 100.0000 1 5217 1 chr5B.!!$F4 5216
1 TraesCS5B01G253300 chr5B 436152766 436154733 1967 False 2388.0 2388 88.6150 628 2602 1 chr5B.!!$F3 1974
2 TraesCS5B01G253300 chr5B 436096036 436097681 1645 False 2178.0 2178 90.5250 628 2282 1 chr5B.!!$F2 1654
3 TraesCS5B01G253300 chr5B 436209202 436211159 1957 False 2176.0 2176 86.7310 627 2602 1 chr5B.!!$F5 1975
4 TraesCS5B01G253300 chr5D 368078658 368080628 1970 False 2464.0 2464 89.2480 628 2602 1 chr5D.!!$F2 1974
5 TraesCS5B01G253300 chr5D 368029529 368031499 1970 False 2436.0 2436 89.0180 628 2602 1 chr5D.!!$F1 1974
6 TraesCS5B01G253300 chr5D 368286074 368288025 1951 False 2143.0 2143 86.4710 627 2602 1 chr5D.!!$F3 1975
7 TraesCS5B01G253300 chr5D 368244295 368249018 4723 False 1474.6 6023 92.2286 3 5217 5 chr5D.!!$F5 5214
8 TraesCS5B01G253300 chr5D 367990886 367997935 7049 False 1119.0 1131 79.6810 628 2252 2 chr5D.!!$F4 1624
9 TraesCS5B01G253300 chr5A 470076591 470078561 1970 False 2392.0 2392 88.6030 629 2604 1 chr5A.!!$F2 1975
10 TraesCS5B01G253300 chr5A 470170471 470172420 1949 False 2097.0 2097 86.0760 627 2597 1 chr5A.!!$F3 1970
11 TraesCS5B01G253300 chr5A 469898891 469900500 1609 False 1147.0 1147 79.8770 1001 2601 1 chr5A.!!$F1 1600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 288 0.036105 ATGGTTGTCTCGCTGATGCA 60.036 50.0 0.00 0.0 39.64 3.96 F
384 385 0.036388 TCGCTTGCTTAGGGGTCAAG 60.036 55.0 0.00 0.0 39.95 3.02 F
1237 1260 0.038159 CCCACAAGAGTCGGTCTCAC 60.038 60.0 5.11 0.0 44.98 3.51 F
2901 8395 1.502231 ACACGTGTCTTGCATGAGAC 58.498 50.0 17.22 17.1 44.97 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1280 1303 0.998669 TGCATATGTTGACAGCGACG 59.001 50.0 4.29 0.00 0.00 5.12 R
1707 1733 1.310216 TAACTGCATGCTGCCAGCTG 61.310 55.0 22.92 14.08 44.23 4.24 R
3195 8690 0.250513 GGGACAAGAACCAGCGAGAT 59.749 55.0 0.00 0.00 0.00 2.75 R
4433 9950 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.461548 TGCCGGAATACAGCAGAGAG 59.538 55.000 5.05 0.00 31.65 3.20
80 81 4.101585 AGCTGTCTAGGCATTTGCATACTA 59.898 41.667 9.42 0.00 44.36 1.82
142 143 2.430546 CTGTCTGTGAGACTGTGACC 57.569 55.000 5.39 0.00 45.27 4.02
143 144 1.959985 CTGTCTGTGAGACTGTGACCT 59.040 52.381 5.39 0.00 45.27 3.85
152 153 2.630580 GAGACTGTGACCTGTCCTCTTT 59.369 50.000 2.92 0.00 39.60 2.52
155 156 2.505819 ACTGTGACCTGTCCTCTTTGTT 59.494 45.455 0.00 0.00 0.00 2.83
278 279 8.258708 ACTATTTCTAAGTGGTATGGTTGTCTC 58.741 37.037 0.00 0.00 0.00 3.36
280 281 2.094762 AAGTGGTATGGTTGTCTCGC 57.905 50.000 0.00 0.00 0.00 5.03
281 282 1.267121 AGTGGTATGGTTGTCTCGCT 58.733 50.000 0.00 0.00 0.00 4.93
283 284 1.067142 GTGGTATGGTTGTCTCGCTGA 60.067 52.381 0.00 0.00 0.00 4.26
284 285 1.831106 TGGTATGGTTGTCTCGCTGAT 59.169 47.619 0.00 0.00 0.00 2.90
285 286 2.205074 GGTATGGTTGTCTCGCTGATG 58.795 52.381 0.00 0.00 0.00 3.07
286 287 1.594862 GTATGGTTGTCTCGCTGATGC 59.405 52.381 0.00 0.00 0.00 3.91
287 288 0.036105 ATGGTTGTCTCGCTGATGCA 60.036 50.000 0.00 0.00 39.64 3.96
288 289 0.950555 TGGTTGTCTCGCTGATGCAC 60.951 55.000 0.00 0.00 39.64 4.57
289 290 0.950555 GGTTGTCTCGCTGATGCACA 60.951 55.000 0.00 0.00 39.64 4.57
290 291 0.164647 GTTGTCTCGCTGATGCACAC 59.835 55.000 0.00 0.00 39.64 3.82
291 292 0.249826 TTGTCTCGCTGATGCACACA 60.250 50.000 0.00 0.00 39.64 3.72
292 293 0.037046 TGTCTCGCTGATGCACACAT 60.037 50.000 0.00 0.00 39.98 3.21
293 294 1.081892 GTCTCGCTGATGCACACATT 58.918 50.000 0.00 0.00 36.35 2.71
294 295 1.466167 GTCTCGCTGATGCACACATTT 59.534 47.619 0.00 0.00 36.35 2.32
295 296 2.095567 GTCTCGCTGATGCACACATTTT 60.096 45.455 0.00 0.00 36.35 1.82
296 297 2.095617 TCTCGCTGATGCACACATTTTG 60.096 45.455 0.00 0.00 36.35 2.44
297 298 1.608109 TCGCTGATGCACACATTTTGT 59.392 42.857 0.00 0.00 39.97 2.83
298 299 2.034432 TCGCTGATGCACACATTTTGTT 59.966 40.909 0.00 0.00 35.67 2.83
299 300 3.251972 TCGCTGATGCACACATTTTGTTA 59.748 39.130 0.00 0.00 35.67 2.41
300 301 3.605056 CGCTGATGCACACATTTTGTTAG 59.395 43.478 0.00 0.00 35.67 2.34
301 302 4.613394 CGCTGATGCACACATTTTGTTAGA 60.613 41.667 0.00 0.00 35.67 2.10
302 303 4.855388 GCTGATGCACACATTTTGTTAGAG 59.145 41.667 0.00 0.00 35.67 2.43
303 304 5.563475 GCTGATGCACACATTTTGTTAGAGT 60.563 40.000 0.00 0.00 35.67 3.24
304 305 6.348458 GCTGATGCACACATTTTGTTAGAGTA 60.348 38.462 0.00 0.00 35.67 2.59
305 306 6.898041 TGATGCACACATTTTGTTAGAGTAC 58.102 36.000 0.00 0.00 35.67 2.73
306 307 5.337219 TGCACACATTTTGTTAGAGTACG 57.663 39.130 0.00 0.00 35.67 3.67
307 308 4.812091 TGCACACATTTTGTTAGAGTACGT 59.188 37.500 0.00 0.00 35.67 3.57
308 309 5.984323 TGCACACATTTTGTTAGAGTACGTA 59.016 36.000 0.00 0.00 35.67 3.57
309 310 6.479331 TGCACACATTTTGTTAGAGTACGTAA 59.521 34.615 0.00 0.00 35.67 3.18
310 311 7.171848 TGCACACATTTTGTTAGAGTACGTAAT 59.828 33.333 0.00 0.00 35.67 1.89
311 312 7.477422 GCACACATTTTGTTAGAGTACGTAATG 59.523 37.037 0.00 0.00 35.67 1.90
312 313 7.955324 CACACATTTTGTTAGAGTACGTAATGG 59.045 37.037 0.00 0.00 35.67 3.16
313 314 7.118680 ACACATTTTGTTAGAGTACGTAATGGG 59.881 37.037 0.00 0.41 33.09 4.00
314 315 6.093082 ACATTTTGTTAGAGTACGTAATGGGC 59.907 38.462 0.00 0.00 31.30 5.36
315 316 3.806625 TGTTAGAGTACGTAATGGGCC 57.193 47.619 0.00 0.00 0.00 5.80
316 317 3.368248 TGTTAGAGTACGTAATGGGCCT 58.632 45.455 4.53 0.00 0.00 5.19
317 318 3.131577 TGTTAGAGTACGTAATGGGCCTG 59.868 47.826 4.53 0.00 0.00 4.85
318 319 1.120530 AGAGTACGTAATGGGCCTGG 58.879 55.000 4.53 0.00 0.00 4.45
319 320 0.106149 GAGTACGTAATGGGCCTGGG 59.894 60.000 4.53 0.00 0.00 4.45
320 321 1.525306 GTACGTAATGGGCCTGGGC 60.525 63.158 12.58 12.58 41.06 5.36
321 322 1.691337 TACGTAATGGGCCTGGGCT 60.691 57.895 20.47 2.75 41.60 5.19
322 323 1.978455 TACGTAATGGGCCTGGGCTG 61.978 60.000 20.47 6.00 41.60 4.85
323 324 2.123726 GTAATGGGCCTGGGCTGG 60.124 66.667 20.47 0.00 41.60 4.85
330 331 3.556306 GCCTGGGCTGGCGGTATA 61.556 66.667 4.12 0.00 43.74 1.47
331 332 2.743718 CCTGGGCTGGCGGTATAG 59.256 66.667 0.00 0.00 0.00 1.31
332 333 2.031163 CTGGGCTGGCGGTATAGC 59.969 66.667 0.00 0.00 39.17 2.97
345 346 4.416505 CGGTATAGCCCGTTAGTCTTAG 57.583 50.000 0.00 0.00 43.07 2.18
346 347 3.190118 CGGTATAGCCCGTTAGTCTTAGG 59.810 52.174 0.00 0.00 43.07 2.69
347 348 3.509184 GGTATAGCCCGTTAGTCTTAGGG 59.491 52.174 0.00 0.00 46.44 3.53
348 349 2.834638 TAGCCCGTTAGTCTTAGGGT 57.165 50.000 1.07 0.00 45.48 4.34
349 350 1.948391 AGCCCGTTAGTCTTAGGGTT 58.052 50.000 1.07 0.00 45.48 4.11
350 351 3.105959 AGCCCGTTAGTCTTAGGGTTA 57.894 47.619 1.07 0.00 45.48 2.85
351 352 3.444029 AGCCCGTTAGTCTTAGGGTTAA 58.556 45.455 1.07 0.00 45.48 2.01
352 353 4.035814 AGCCCGTTAGTCTTAGGGTTAAT 58.964 43.478 1.07 0.00 45.48 1.40
353 354 4.472470 AGCCCGTTAGTCTTAGGGTTAATT 59.528 41.667 1.07 0.00 45.48 1.40
354 355 5.662657 AGCCCGTTAGTCTTAGGGTTAATTA 59.337 40.000 1.07 0.00 45.48 1.40
355 356 5.987953 GCCCGTTAGTCTTAGGGTTAATTAG 59.012 44.000 1.07 0.00 45.48 1.73
356 357 6.183360 GCCCGTTAGTCTTAGGGTTAATTAGA 60.183 42.308 1.07 0.00 45.48 2.10
357 358 7.432059 CCCGTTAGTCTTAGGGTTAATTAGAG 58.568 42.308 0.00 0.00 39.05 2.43
358 359 7.286316 CCCGTTAGTCTTAGGGTTAATTAGAGA 59.714 40.741 0.00 0.00 39.05 3.10
359 360 8.858094 CCGTTAGTCTTAGGGTTAATTAGAGAT 58.142 37.037 0.00 0.00 0.00 2.75
364 365 9.382307 AGTCTTAGGGTTAATTAGAGATAAGGG 57.618 37.037 8.51 0.00 0.00 3.95
365 366 9.156940 GTCTTAGGGTTAATTAGAGATAAGGGT 57.843 37.037 8.51 0.00 0.00 4.34
366 367 9.377238 TCTTAGGGTTAATTAGAGATAAGGGTC 57.623 37.037 8.51 0.00 0.00 4.46
367 368 6.667558 AGGGTTAATTAGAGATAAGGGTCG 57.332 41.667 0.00 0.00 0.00 4.79
368 369 5.011840 AGGGTTAATTAGAGATAAGGGTCGC 59.988 44.000 0.00 0.00 0.00 5.19
369 370 5.011840 GGGTTAATTAGAGATAAGGGTCGCT 59.988 44.000 0.00 0.00 32.84 4.93
370 371 6.464039 GGGTTAATTAGAGATAAGGGTCGCTT 60.464 42.308 7.38 7.38 30.69 4.68
371 372 6.424207 GGTTAATTAGAGATAAGGGTCGCTTG 59.576 42.308 12.19 0.00 30.69 4.01
372 373 3.454371 TTAGAGATAAGGGTCGCTTGC 57.546 47.619 12.19 4.62 30.69 4.01
373 374 1.490574 AGAGATAAGGGTCGCTTGCT 58.509 50.000 12.19 9.05 0.00 3.91
374 375 1.834263 AGAGATAAGGGTCGCTTGCTT 59.166 47.619 12.19 0.00 0.00 3.91
375 376 3.031736 AGAGATAAGGGTCGCTTGCTTA 58.968 45.455 12.19 0.00 0.00 3.09
376 377 3.068873 AGAGATAAGGGTCGCTTGCTTAG 59.931 47.826 12.19 0.00 0.00 2.18
377 378 2.103263 AGATAAGGGTCGCTTGCTTAGG 59.897 50.000 12.19 0.00 0.00 2.69
378 379 0.539986 TAAGGGTCGCTTGCTTAGGG 59.460 55.000 12.19 0.00 38.13 3.53
379 380 2.124695 GGGTCGCTTGCTTAGGGG 60.125 66.667 4.21 0.00 37.41 4.79
380 381 2.669240 GGTCGCTTGCTTAGGGGT 59.331 61.111 4.21 0.00 37.41 4.95
381 382 1.449778 GGTCGCTTGCTTAGGGGTC 60.450 63.158 4.21 0.00 37.41 4.46
382 383 1.295423 GTCGCTTGCTTAGGGGTCA 59.705 57.895 4.21 0.00 37.41 4.02
383 384 0.321298 GTCGCTTGCTTAGGGGTCAA 60.321 55.000 4.21 0.00 37.41 3.18
384 385 0.036388 TCGCTTGCTTAGGGGTCAAG 60.036 55.000 0.00 0.00 39.95 3.02
385 386 0.321653 CGCTTGCTTAGGGGTCAAGT 60.322 55.000 0.00 0.00 39.36 3.16
386 387 1.066430 CGCTTGCTTAGGGGTCAAGTA 60.066 52.381 0.00 0.00 39.36 2.24
387 388 2.614481 CGCTTGCTTAGGGGTCAAGTAA 60.614 50.000 0.00 0.00 39.36 2.24
388 389 3.010420 GCTTGCTTAGGGGTCAAGTAAG 58.990 50.000 8.11 8.11 44.06 2.34
389 390 2.781681 TGCTTAGGGGTCAAGTAAGC 57.218 50.000 6.41 6.41 45.90 3.09
390 391 1.280998 TGCTTAGGGGTCAAGTAAGCC 59.719 52.381 10.06 0.00 45.37 4.35
391 392 1.560146 GCTTAGGGGTCAAGTAAGCCT 59.440 52.381 2.53 0.00 41.83 4.58
392 393 2.026169 GCTTAGGGGTCAAGTAAGCCTT 60.026 50.000 2.53 0.00 41.83 4.35
404 405 3.580084 AGCCTTGCTTGGGAGTCA 58.420 55.556 0.00 0.00 33.89 3.41
405 406 1.846261 AGCCTTGCTTGGGAGTCAA 59.154 52.632 0.00 0.00 33.89 3.18
415 416 4.625607 CTTGGGAGTCAAGTAAACCTCT 57.374 45.455 0.00 0.00 45.81 3.69
416 417 5.740290 CTTGGGAGTCAAGTAAACCTCTA 57.260 43.478 0.00 0.00 45.81 2.43
417 418 6.301169 CTTGGGAGTCAAGTAAACCTCTAT 57.699 41.667 0.00 0.00 45.81 1.98
418 419 7.419711 CTTGGGAGTCAAGTAAACCTCTATA 57.580 40.000 0.00 0.00 45.81 1.31
419 420 7.989947 TTGGGAGTCAAGTAAACCTCTATAT 57.010 36.000 0.00 0.00 0.00 0.86
420 421 9.144298 CTTGGGAGTCAAGTAAACCTCTATATA 57.856 37.037 0.00 0.00 45.81 0.86
421 422 9.496710 TTGGGAGTCAAGTAAACCTCTATATAA 57.503 33.333 0.00 0.00 0.00 0.98
422 423 9.496710 TGGGAGTCAAGTAAACCTCTATATAAA 57.503 33.333 0.00 0.00 0.00 1.40
423 424 9.984190 GGGAGTCAAGTAAACCTCTATATAAAG 57.016 37.037 0.00 0.00 0.00 1.85
447 448 9.709495 AAGAGAGATGTATCAATCTAATCAAGC 57.291 33.333 0.00 0.00 37.03 4.01
448 449 8.868103 AGAGAGATGTATCAATCTAATCAAGCA 58.132 33.333 0.00 0.00 37.03 3.91
449 450 9.486497 GAGAGATGTATCAATCTAATCAAGCAA 57.514 33.333 0.00 0.00 37.03 3.91
450 451 9.491675 AGAGATGTATCAATCTAATCAAGCAAG 57.508 33.333 0.00 0.00 37.03 4.01
451 452 9.486497 GAGATGTATCAATCTAATCAAGCAAGA 57.514 33.333 0.00 0.00 37.03 3.02
452 453 9.842775 AGATGTATCAATCTAATCAAGCAAGAA 57.157 29.630 0.00 0.00 35.09 2.52
462 463 9.911788 ATCTAATCAAGCAAGAATTAAGAAGGA 57.088 29.630 0.00 0.00 0.00 3.36
463 464 9.739276 TCTAATCAAGCAAGAATTAAGAAGGAA 57.261 29.630 0.00 0.00 0.00 3.36
466 467 9.866798 AATCAAGCAAGAATTAAGAAGGAAATC 57.133 29.630 0.00 0.00 0.00 2.17
467 468 7.830739 TCAAGCAAGAATTAAGAAGGAAATCC 58.169 34.615 0.00 0.00 0.00 3.01
468 469 6.782082 AGCAAGAATTAAGAAGGAAATCCC 57.218 37.500 0.00 0.00 36.42 3.85
480 481 1.769026 GAAATCCCTTCCCTCTTGCC 58.231 55.000 0.00 0.00 0.00 4.52
481 482 0.336392 AAATCCCTTCCCTCTTGCCC 59.664 55.000 0.00 0.00 0.00 5.36
482 483 1.926426 AATCCCTTCCCTCTTGCCCG 61.926 60.000 0.00 0.00 0.00 6.13
483 484 4.115199 CCCTTCCCTCTTGCCCGG 62.115 72.222 0.00 0.00 0.00 5.73
484 485 4.803908 CCTTCCCTCTTGCCCGGC 62.804 72.222 1.04 1.04 0.00 6.13
485 486 4.803908 CTTCCCTCTTGCCCGGCC 62.804 72.222 7.03 0.00 0.00 6.13
524 525 4.154347 CAGCCCTCTCGCACCCTC 62.154 72.222 0.00 0.00 0.00 4.30
527 528 2.685380 CCCTCTCGCACCCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
528 529 2.726351 CCCTCTCGCACCCTCCTTC 61.726 68.421 0.00 0.00 0.00 3.46
529 530 1.684049 CCTCTCGCACCCTCCTTCT 60.684 63.158 0.00 0.00 0.00 2.85
530 531 0.395862 CCTCTCGCACCCTCCTTCTA 60.396 60.000 0.00 0.00 0.00 2.10
531 532 1.028905 CTCTCGCACCCTCCTTCTAG 58.971 60.000 0.00 0.00 0.00 2.43
532 533 1.038130 TCTCGCACCCTCCTTCTAGC 61.038 60.000 0.00 0.00 0.00 3.42
533 534 2.105128 CGCACCCTCCTTCTAGCG 59.895 66.667 0.00 0.00 39.17 4.26
534 535 2.202946 GCACCCTCCTTCTAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
535 536 2.501610 CACCCTCCTTCTAGCGCC 59.498 66.667 2.29 0.00 0.00 6.53
536 537 2.038975 ACCCTCCTTCTAGCGCCA 59.961 61.111 2.29 0.00 0.00 5.69
537 538 2.359967 ACCCTCCTTCTAGCGCCAC 61.360 63.158 2.29 0.00 0.00 5.01
538 539 2.060980 CCCTCCTTCTAGCGCCACT 61.061 63.158 2.29 0.00 0.00 4.00
539 540 1.617947 CCCTCCTTCTAGCGCCACTT 61.618 60.000 2.29 0.00 0.00 3.16
540 541 0.179097 CCTCCTTCTAGCGCCACTTC 60.179 60.000 2.29 0.00 0.00 3.01
541 542 0.179097 CTCCTTCTAGCGCCACTTCC 60.179 60.000 2.29 0.00 0.00 3.46
542 543 1.153349 CCTTCTAGCGCCACTTCCC 60.153 63.158 2.29 0.00 0.00 3.97
543 544 1.519455 CTTCTAGCGCCACTTCCCG 60.519 63.158 2.29 0.00 0.00 5.14
544 545 2.907897 CTTCTAGCGCCACTTCCCGG 62.908 65.000 2.29 0.00 0.00 5.73
589 590 4.214327 CCTCTCGCGCCCTCCTTC 62.214 72.222 0.00 0.00 0.00 3.46
590 591 3.144193 CTCTCGCGCCCTCCTTCT 61.144 66.667 0.00 0.00 0.00 2.85
591 592 1.824329 CTCTCGCGCCCTCCTTCTA 60.824 63.158 0.00 0.00 0.00 2.10
592 593 1.791103 CTCTCGCGCCCTCCTTCTAG 61.791 65.000 0.00 0.00 0.00 2.43
593 594 3.492311 CTCGCGCCCTCCTTCTAGC 62.492 68.421 0.00 0.00 0.00 3.42
594 595 3.838271 CGCGCCCTCCTTCTAGCA 61.838 66.667 0.00 0.00 0.00 3.49
595 596 2.107953 GCGCCCTCCTTCTAGCAG 59.892 66.667 0.00 0.00 0.00 4.24
596 597 2.107953 CGCCCTCCTTCTAGCAGC 59.892 66.667 0.00 0.00 0.00 5.25
597 598 2.107953 GCCCTCCTTCTAGCAGCG 59.892 66.667 0.00 0.00 0.00 5.18
598 599 2.107953 CCCTCCTTCTAGCAGCGC 59.892 66.667 0.00 0.00 0.00 5.92
599 600 2.107953 CCTCCTTCTAGCAGCGCC 59.892 66.667 2.29 0.00 0.00 6.53
600 601 2.725312 CCTCCTTCTAGCAGCGCCA 61.725 63.158 2.29 0.00 0.00 5.69
601 602 1.445095 CTCCTTCTAGCAGCGCCAT 59.555 57.895 2.29 0.00 0.00 4.40
602 603 0.676184 CTCCTTCTAGCAGCGCCATA 59.324 55.000 2.29 0.00 0.00 2.74
603 604 1.069204 CTCCTTCTAGCAGCGCCATAA 59.931 52.381 2.29 0.00 0.00 1.90
1195 1218 0.257905 ATCACACCTCCAGCATGCAT 59.742 50.000 21.98 1.69 31.97 3.96
1237 1260 0.038159 CCCACAAGAGTCGGTCTCAC 60.038 60.000 5.11 0.00 44.98 3.51
1280 1303 4.002316 GCTATCCTGATTGATGAAGCCTC 58.998 47.826 0.00 0.00 0.00 4.70
1707 1733 3.565902 GGCTAATTGAAGACATGGTAGCC 59.434 47.826 0.00 3.26 40.00 3.93
2127 2157 1.561643 TCAGTCCCTACAAGCCTGAG 58.438 55.000 0.00 0.00 0.00 3.35
2398 7887 9.113838 CAATATCAGAGTTGCTGTTTTATAGGT 57.886 33.333 0.00 0.00 45.14 3.08
2460 7949 3.494626 GCCGCATATATTGGATGATACGG 59.505 47.826 5.15 0.00 39.84 4.02
2549 8038 6.048732 TGTCTAAATGGAAGTCAGCATACA 57.951 37.500 0.00 0.00 0.00 2.29
2783 8277 9.787435 TGATATAGTTTTGGTGACATATAACCC 57.213 33.333 0.00 0.00 42.32 4.11
2886 8380 1.726791 CCTTGTAGCTGCTGTAACACG 59.273 52.381 13.43 6.49 0.00 4.49
2901 8395 1.502231 ACACGTGTCTTGCATGAGAC 58.498 50.000 17.22 17.10 44.97 3.36
2942 8436 2.798009 CGGCTTAATTGGGTGGCG 59.202 61.111 0.00 0.00 41.56 5.69
3213 8708 2.961526 TATCTCGCTGGTTCTTGTCC 57.038 50.000 0.00 0.00 0.00 4.02
3222 8717 3.648545 GCTGGTTCTTGTCCCCTATATCT 59.351 47.826 0.00 0.00 0.00 1.98
3236 8731 8.315482 GTCCCCTATATCTGTTTTAATCTCTCC 58.685 40.741 0.00 0.00 0.00 3.71
3245 8740 8.862325 TCTGTTTTAATCTCTCCTGCAATAAA 57.138 30.769 0.00 0.00 0.00 1.40
3487 8982 4.292186 ACTATGTTCATTGTGCTGAGGT 57.708 40.909 0.00 0.00 0.00 3.85
3503 8998 2.143925 GAGGTAGCCAACAGTCAACAC 58.856 52.381 0.00 0.00 0.00 3.32
3504 8999 1.488812 AGGTAGCCAACAGTCAACACA 59.511 47.619 0.00 0.00 0.00 3.72
3573 9084 5.227152 GTTTGTGTAGGTGCCCTAAATTTG 58.773 41.667 0.00 0.00 37.91 2.32
3740 9251 1.098129 TGCGTTTGCTGGCACACTTA 61.098 50.000 9.63 0.00 43.34 2.24
3815 9326 8.856490 AAAGTTATTTGTTTGCTGTCAAGTAG 57.144 30.769 0.00 0.00 33.12 2.57
3832 9343 5.709164 TCAAGTAGTGTAACAGAGAGGTACC 59.291 44.000 2.73 2.73 39.78 3.34
3844 9355 7.317722 ACAGAGAGGTACCTAAAAATGTTCT 57.682 36.000 16.29 4.11 0.00 3.01
3859 9370 6.963049 AAATGTTCTACATCGTACACCTTC 57.037 37.500 0.00 0.00 37.97 3.46
3863 9374 6.558009 TGTTCTACATCGTACACCTTCATAC 58.442 40.000 0.00 0.00 0.00 2.39
3888 9399 8.725148 ACAGCAGACAAATTAACATAAGAAGAG 58.275 33.333 0.00 0.00 0.00 2.85
3900 9411 7.674471 AACATAAGAAGAGTTAAGGAACAGC 57.326 36.000 0.00 0.00 38.10 4.40
3902 9413 3.320673 AGAAGAGTTAAGGAACAGCCG 57.679 47.619 0.00 0.00 43.43 5.52
3905 9416 1.550976 AGAGTTAAGGAACAGCCGGAG 59.449 52.381 5.05 0.00 43.43 4.63
3919 9430 1.625818 GCCGGAGTAGGAATCATGGAT 59.374 52.381 5.05 0.00 0.00 3.41
3950 9461 1.275010 ACGCCAAATTTTCCATGTCCC 59.725 47.619 0.00 0.00 0.00 4.46
3951 9462 1.735369 CGCCAAATTTTCCATGTCCCG 60.735 52.381 0.00 0.00 0.00 5.14
3979 9490 8.571461 TTCTGATTTGAGCTTTGAATATGAGT 57.429 30.769 0.00 0.00 0.00 3.41
3980 9491 7.982224 TCTGATTTGAGCTTTGAATATGAGTG 58.018 34.615 0.00 0.00 0.00 3.51
3989 9500 5.400066 TTTGAATATGAGTGACGACCTGA 57.600 39.130 0.00 0.00 0.00 3.86
4022 9533 5.707298 TCTCTGCACCTTTAATTCTTTGAGG 59.293 40.000 0.00 0.00 0.00 3.86
4038 9549 4.385358 TTGAGGAAAAGAAAACAGTGCC 57.615 40.909 0.00 0.00 0.00 5.01
4072 9583 2.358267 CTCGAACGGCTATTCTACCTGT 59.642 50.000 0.00 0.00 0.00 4.00
4073 9584 2.357009 TCGAACGGCTATTCTACCTGTC 59.643 50.000 0.00 0.00 0.00 3.51
4074 9585 2.358267 CGAACGGCTATTCTACCTGTCT 59.642 50.000 0.00 0.00 0.00 3.41
4102 9613 7.011482 GTGATGAAAGTACCATTGTCCTGTATC 59.989 40.741 0.00 0.00 0.00 2.24
4163 9675 4.451629 AATGCTGGCATTTCTTCTCAAG 57.548 40.909 14.14 0.00 43.32 3.02
4171 9683 5.184711 GGCATTTCTTCTCAAGATCTCAGT 58.815 41.667 0.00 0.00 37.38 3.41
4176 9688 4.022603 TCTTCTCAAGATCTCAGTGAGGG 58.977 47.826 19.99 13.25 39.42 4.30
4219 9734 1.107114 CTGAGAGCCTACCGTGACAT 58.893 55.000 0.00 0.00 0.00 3.06
4220 9735 1.066303 CTGAGAGCCTACCGTGACATC 59.934 57.143 0.00 0.00 0.00 3.06
4221 9736 1.341089 TGAGAGCCTACCGTGACATCT 60.341 52.381 0.00 0.00 0.00 2.90
4246 9761 0.871057 GCTCACTCAGGCTGTTGTTC 59.129 55.000 15.27 6.02 0.00 3.18
4272 9787 2.817844 CTGTTTCTTTTTACCCCCGAGG 59.182 50.000 0.00 0.00 43.78 4.63
4301 9816 2.909217 AGCTCCCTCTCCTGTAAAACT 58.091 47.619 0.00 0.00 0.00 2.66
4302 9817 2.569404 AGCTCCCTCTCCTGTAAAACTG 59.431 50.000 0.00 0.00 0.00 3.16
4303 9818 2.303311 GCTCCCTCTCCTGTAAAACTGT 59.697 50.000 0.00 0.00 0.00 3.55
4304 9819 3.866449 GCTCCCTCTCCTGTAAAACTGTG 60.866 52.174 0.00 0.00 0.00 3.66
4305 9820 3.578716 CTCCCTCTCCTGTAAAACTGTGA 59.421 47.826 0.00 0.00 0.00 3.58
4306 9821 4.168101 TCCCTCTCCTGTAAAACTGTGAT 58.832 43.478 0.00 0.00 0.00 3.06
4307 9822 4.597507 TCCCTCTCCTGTAAAACTGTGATT 59.402 41.667 0.00 0.00 0.00 2.57
4308 9823 5.073144 TCCCTCTCCTGTAAAACTGTGATTT 59.927 40.000 0.00 0.00 0.00 2.17
4309 9824 5.412904 CCCTCTCCTGTAAAACTGTGATTTC 59.587 44.000 0.00 0.00 0.00 2.17
4310 9825 5.412904 CCTCTCCTGTAAAACTGTGATTTCC 59.587 44.000 0.00 0.00 0.00 3.13
4311 9826 6.187727 TCTCCTGTAAAACTGTGATTTCCT 57.812 37.500 0.00 0.00 0.00 3.36
4312 9827 6.601332 TCTCCTGTAAAACTGTGATTTCCTT 58.399 36.000 0.00 0.00 0.00 3.36
4313 9828 7.060421 TCTCCTGTAAAACTGTGATTTCCTTT 58.940 34.615 0.00 0.00 0.00 3.11
4314 9829 7.559897 TCTCCTGTAAAACTGTGATTTCCTTTT 59.440 33.333 0.00 0.00 0.00 2.27
4315 9830 7.488322 TCCTGTAAAACTGTGATTTCCTTTTG 58.512 34.615 0.00 0.00 0.00 2.44
4316 9831 7.123547 TCCTGTAAAACTGTGATTTCCTTTTGT 59.876 33.333 0.00 0.00 0.00 2.83
4317 9832 7.763985 CCTGTAAAACTGTGATTTCCTTTTGTT 59.236 33.333 0.00 0.00 0.00 2.83
4318 9833 9.150348 CTGTAAAACTGTGATTTCCTTTTGTTT 57.850 29.630 0.00 0.00 0.00 2.83
4319 9834 9.495572 TGTAAAACTGTGATTTCCTTTTGTTTT 57.504 25.926 0.00 0.00 38.99 2.43
4322 9837 7.977789 AACTGTGATTTCCTTTTGTTTTTGT 57.022 28.000 0.00 0.00 0.00 2.83
4323 9838 7.363205 ACTGTGATTTCCTTTTGTTTTTGTG 57.637 32.000 0.00 0.00 0.00 3.33
4324 9839 6.371271 ACTGTGATTTCCTTTTGTTTTTGTGG 59.629 34.615 0.00 0.00 0.00 4.17
4325 9840 5.645497 TGTGATTTCCTTTTGTTTTTGTGGG 59.355 36.000 0.00 0.00 0.00 4.61
4326 9841 5.877564 GTGATTTCCTTTTGTTTTTGTGGGA 59.122 36.000 0.00 0.00 0.00 4.37
4327 9842 6.372937 GTGATTTCCTTTTGTTTTTGTGGGAA 59.627 34.615 0.00 0.00 0.00 3.97
4328 9843 6.597280 TGATTTCCTTTTGTTTTTGTGGGAAG 59.403 34.615 0.00 0.00 33.73 3.46
4329 9844 5.491323 TTCCTTTTGTTTTTGTGGGAAGT 57.509 34.783 0.00 0.00 0.00 3.01
4330 9845 6.607004 TTCCTTTTGTTTTTGTGGGAAGTA 57.393 33.333 0.00 0.00 0.00 2.24
4331 9846 6.607004 TCCTTTTGTTTTTGTGGGAAGTAA 57.393 33.333 0.00 0.00 0.00 2.24
4332 9847 7.005709 TCCTTTTGTTTTTGTGGGAAGTAAA 57.994 32.000 0.00 0.00 0.00 2.01
4333 9848 7.450903 TCCTTTTGTTTTTGTGGGAAGTAAAA 58.549 30.769 0.00 0.00 0.00 1.52
4334 9849 7.388224 TCCTTTTGTTTTTGTGGGAAGTAAAAC 59.612 33.333 0.00 0.00 39.62 2.43
4335 9850 7.389330 CCTTTTGTTTTTGTGGGAAGTAAAACT 59.611 33.333 0.00 0.00 39.79 2.66
4336 9851 7.659652 TTTGTTTTTGTGGGAAGTAAAACTG 57.340 32.000 0.00 0.00 39.79 3.16
4337 9852 6.347859 TGTTTTTGTGGGAAGTAAAACTGT 57.652 33.333 0.00 0.00 39.79 3.55
4338 9853 7.463961 TGTTTTTGTGGGAAGTAAAACTGTA 57.536 32.000 0.00 0.00 39.79 2.74
4339 9854 7.540299 TGTTTTTGTGGGAAGTAAAACTGTAG 58.460 34.615 0.00 0.00 39.79 2.74
4340 9855 7.393796 TGTTTTTGTGGGAAGTAAAACTGTAGA 59.606 33.333 0.00 0.00 39.79 2.59
4341 9856 7.941431 TTTTGTGGGAAGTAAAACTGTAGAA 57.059 32.000 0.00 0.00 0.00 2.10
4342 9857 6.930667 TTGTGGGAAGTAAAACTGTAGAAC 57.069 37.500 0.00 0.00 0.00 3.01
4343 9858 6.243216 TGTGGGAAGTAAAACTGTAGAACT 57.757 37.500 0.00 0.00 0.00 3.01
4359 9874 8.994429 CTGTAGAACTGTGATTTCTTCAGTAT 57.006 34.615 9.39 0.00 40.73 2.12
4388 9905 3.327757 TGCTGTTAGATGGAGGTTGAACT 59.672 43.478 0.00 0.00 0.00 3.01
4389 9906 4.202461 TGCTGTTAGATGGAGGTTGAACTT 60.202 41.667 0.00 0.00 0.00 2.66
4390 9907 4.154918 GCTGTTAGATGGAGGTTGAACTTG 59.845 45.833 0.00 0.00 0.00 3.16
4393 9910 5.763204 TGTTAGATGGAGGTTGAACTTGAAC 59.237 40.000 0.00 0.00 0.00 3.18
4395 9912 2.358322 TGGAGGTTGAACTTGAACCC 57.642 50.000 6.53 0.00 43.52 4.11
4396 9913 1.133606 TGGAGGTTGAACTTGAACCCC 60.134 52.381 6.53 8.18 43.52 4.95
4397 9914 1.133606 GGAGGTTGAACTTGAACCCCA 60.134 52.381 6.53 0.00 43.52 4.96
4398 9915 2.661718 GAGGTTGAACTTGAACCCCAA 58.338 47.619 6.53 0.00 43.52 4.12
4405 9922 3.569873 CTTGAACCCCAAGCCGTAT 57.430 52.632 0.00 0.00 44.90 3.06
4406 9923 1.094785 CTTGAACCCCAAGCCGTATG 58.905 55.000 0.00 0.00 44.90 2.39
4407 9924 0.402504 TTGAACCCCAAGCCGTATGT 59.597 50.000 0.00 0.00 0.00 2.29
4408 9925 1.277579 TGAACCCCAAGCCGTATGTA 58.722 50.000 0.00 0.00 0.00 2.29
4409 9926 1.841277 TGAACCCCAAGCCGTATGTAT 59.159 47.619 0.00 0.00 0.00 2.29
4410 9927 3.039743 TGAACCCCAAGCCGTATGTATA 58.960 45.455 0.00 0.00 0.00 1.47
4411 9928 3.455177 TGAACCCCAAGCCGTATGTATAA 59.545 43.478 0.00 0.00 0.00 0.98
4412 9929 3.480505 ACCCCAAGCCGTATGTATAAC 57.519 47.619 0.00 0.00 0.00 1.89
4413 9930 2.105306 ACCCCAAGCCGTATGTATAACC 59.895 50.000 0.00 0.00 0.00 2.85
4414 9931 2.409975 CCCAAGCCGTATGTATAACCG 58.590 52.381 0.00 0.00 0.00 4.44
4415 9932 2.409975 CCAAGCCGTATGTATAACCGG 58.590 52.381 0.00 0.00 43.22 5.28
4418 9935 2.437850 CCGTATGTATAACCGGCGC 58.562 57.895 0.00 0.00 33.20 6.53
4419 9936 0.318869 CCGTATGTATAACCGGCGCA 60.319 55.000 10.83 0.00 33.20 6.09
4420 9937 1.057636 CGTATGTATAACCGGCGCAG 58.942 55.000 10.83 4.65 0.00 5.18
4435 9952 1.641577 CGCAGCTCCTACCTTTGTAC 58.358 55.000 0.00 0.00 0.00 2.90
4436 9953 1.204941 CGCAGCTCCTACCTTTGTACT 59.795 52.381 0.00 0.00 0.00 2.73
4437 9954 2.735762 CGCAGCTCCTACCTTTGTACTC 60.736 54.545 0.00 0.00 0.00 2.59
4438 9955 2.418884 GCAGCTCCTACCTTTGTACTCC 60.419 54.545 0.00 0.00 0.00 3.85
4439 9956 2.168728 CAGCTCCTACCTTTGTACTCCC 59.831 54.545 0.00 0.00 0.00 4.30
4440 9957 2.044630 AGCTCCTACCTTTGTACTCCCT 59.955 50.000 0.00 0.00 0.00 4.20
4441 9958 2.431419 GCTCCTACCTTTGTACTCCCTC 59.569 54.545 0.00 0.00 0.00 4.30
4442 9959 3.032459 CTCCTACCTTTGTACTCCCTCC 58.968 54.545 0.00 0.00 0.00 4.30
4443 9960 1.755380 CCTACCTTTGTACTCCCTCCG 59.245 57.143 0.00 0.00 0.00 4.63
4444 9961 2.454538 CTACCTTTGTACTCCCTCCGT 58.545 52.381 0.00 0.00 0.00 4.69
4445 9962 1.264295 ACCTTTGTACTCCCTCCGTC 58.736 55.000 0.00 0.00 0.00 4.79
4446 9963 0.535797 CCTTTGTACTCCCTCCGTCC 59.464 60.000 0.00 0.00 0.00 4.79
4447 9964 0.172803 CTTTGTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
4448 9965 1.252904 TTTGTACTCCCTCCGTCCGG 61.253 60.000 0.00 0.00 0.00 5.14
4449 9966 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
4450 9967 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4451 9968 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4452 9969 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4453 9970 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4454 9971 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4455 9972 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4456 9973 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4457 9974 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4458 9975 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4459 9976 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4460 9977 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4461 9978 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4462 9979 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4463 9980 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4464 9981 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4465 9982 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4466 9983 5.628134 GTCCGGAAATACTTGTCATCAAAC 58.372 41.667 5.23 0.00 32.87 2.93
4467 9984 5.411669 GTCCGGAAATACTTGTCATCAAACT 59.588 40.000 5.23 0.00 32.87 2.66
4468 9985 6.592607 GTCCGGAAATACTTGTCATCAAACTA 59.407 38.462 5.23 0.00 32.87 2.24
4469 9986 6.816640 TCCGGAAATACTTGTCATCAAACTAG 59.183 38.462 0.00 0.00 32.87 2.57
4470 9987 6.816640 CCGGAAATACTTGTCATCAAACTAGA 59.183 38.462 0.00 0.00 32.87 2.43
4471 9988 7.495934 CCGGAAATACTTGTCATCAAACTAGAT 59.504 37.037 0.00 0.00 32.87 1.98
4472 9989 9.529325 CGGAAATACTTGTCATCAAACTAGATA 57.471 33.333 0.00 0.00 32.87 1.98
4479 9996 9.442047 ACTTGTCATCAAACTAGATAAAAGGAG 57.558 33.333 0.00 0.00 32.87 3.69
4480 9997 9.658799 CTTGTCATCAAACTAGATAAAAGGAGA 57.341 33.333 0.00 0.00 32.87 3.71
4482 9999 9.605275 TGTCATCAAACTAGATAAAAGGAGATG 57.395 33.333 0.00 0.00 0.00 2.90
4483 10000 9.606631 GTCATCAAACTAGATAAAAGGAGATGT 57.393 33.333 0.00 0.00 33.02 3.06
4539 10056 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4546 10063 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4547 10064 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4548 10065 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4549 10066 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4550 10067 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4551 10068 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
4552 10069 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
4553 10070 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
4554 10071 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4555 10072 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4556 10073 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
4557 10074 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4558 10075 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
4559 10076 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
4572 10089 0.677842 GGGAGTACGTGACTTGGTGT 59.322 55.000 0.00 0.00 39.06 4.16
4574 10091 1.336609 GGAGTACGTGACTTGGTGTCC 60.337 57.143 0.00 0.00 44.75 4.02
4609 10126 3.197983 AGGCACTCTGGTTAGTGGAATAC 59.802 47.826 6.17 0.00 45.75 1.89
4626 10143 5.103558 TGGAATACATGTCTTCCCATTCCAT 60.104 40.000 29.95 2.53 43.90 3.41
4653 10170 9.801873 AAATACATAACCAAATCTATGTGTTGC 57.198 29.630 5.24 0.00 38.27 4.17
4655 10172 9.845740 ATACATAACCAAATCTATGTGTTGCTA 57.154 29.630 5.24 0.00 38.78 3.49
4670 10187 5.163602 TGTGTTGCTACGTTTTTCTCCATTT 60.164 36.000 0.00 0.00 0.00 2.32
4678 10195 8.635983 GCTACGTTTTTCTCCATTTGAATTTAC 58.364 33.333 0.00 0.00 0.00 2.01
4682 10199 5.713792 TTTCTCCATTTGAATTTACGGCA 57.286 34.783 0.00 0.00 0.00 5.69
4686 10203 5.941058 TCTCCATTTGAATTTACGGCACTTA 59.059 36.000 0.00 0.00 0.00 2.24
4697 10214 7.875327 ATTTACGGCACTTAATTTAGTCCAT 57.125 32.000 0.00 0.00 0.00 3.41
4724 10241 9.935682 GTGACGATGATTAACATATTGTTTGAT 57.064 29.630 0.00 0.00 41.45 2.57
4788 10305 4.103153 TCTGAAGATCAAACCAACTCCTGT 59.897 41.667 0.00 0.00 0.00 4.00
4815 10332 3.791586 GGGCTCCCTGCTCTCACC 61.792 72.222 0.00 0.00 39.58 4.02
4857 10374 2.354704 CCTCCTCGCTGTAAATGGACAA 60.355 50.000 0.00 0.00 0.00 3.18
4867 10384 0.306533 AAATGGACAACGTCGTGTGC 59.693 50.000 0.00 5.06 40.04 4.57
4879 10396 1.204941 GTCGTGTGCTAGACCCTTGAT 59.795 52.381 0.00 0.00 0.00 2.57
4883 10400 2.237392 GTGTGCTAGACCCTTGATTCCT 59.763 50.000 0.00 0.00 0.00 3.36
4886 10403 2.768527 TGCTAGACCCTTGATTCCTCAG 59.231 50.000 0.00 0.00 31.68 3.35
4888 10405 3.198853 GCTAGACCCTTGATTCCTCAGTT 59.801 47.826 0.00 0.00 31.68 3.16
4903 10420 1.202758 TCAGTTCACATTCCGCTGGTT 60.203 47.619 0.00 0.00 0.00 3.67
4913 10430 0.756294 TCCGCTGGTTCTTCAACTCA 59.244 50.000 0.00 0.00 32.50 3.41
4918 10435 4.215399 CCGCTGGTTCTTCAACTCATTTTA 59.785 41.667 0.00 0.00 32.50 1.52
4920 10437 5.277779 CGCTGGTTCTTCAACTCATTTTACA 60.278 40.000 0.00 0.00 32.50 2.41
4929 10446 8.120465 TCTTCAACTCATTTTACAACGTTCTTC 58.880 33.333 0.00 0.00 0.00 2.87
4967 10484 0.606944 ATTTCGGCTGCGGGTAAACA 60.607 50.000 7.38 0.00 0.00 2.83
4968 10485 1.508808 TTTCGGCTGCGGGTAAACAC 61.509 55.000 7.38 0.00 0.00 3.32
4970 10487 2.667199 GGCTGCGGGTAAACACGT 60.667 61.111 6.62 0.00 46.07 4.49
4971 10488 1.374505 GGCTGCGGGTAAACACGTA 60.375 57.895 6.62 0.48 46.07 3.57
4973 10490 1.081094 GCTGCGGGTAAACACGTATT 58.919 50.000 6.62 0.00 46.07 1.89
4975 10492 2.726681 GCTGCGGGTAAACACGTATTTG 60.727 50.000 1.17 0.00 46.07 2.32
4976 10493 1.805345 TGCGGGTAAACACGTATTTGG 59.195 47.619 1.17 0.00 46.07 3.28
4979 10496 1.473677 GGGTAAACACGTATTTGGCCC 59.526 52.381 14.95 14.95 33.72 5.80
4981 10498 3.608796 GGTAAACACGTATTTGGCCCTA 58.391 45.455 1.17 0.00 0.00 3.53
4983 10500 4.641541 GGTAAACACGTATTTGGCCCTATT 59.358 41.667 1.17 0.00 0.00 1.73
4984 10501 5.125900 GGTAAACACGTATTTGGCCCTATTT 59.874 40.000 1.17 0.00 0.00 1.40
4985 10502 5.731957 AAACACGTATTTGGCCCTATTTT 57.268 34.783 0.00 0.00 0.00 1.82
4986 10503 5.731957 AACACGTATTTGGCCCTATTTTT 57.268 34.783 0.00 0.00 0.00 1.94
5058 10611 1.960040 GCCCAGGTAAAAGCCCATGC 61.960 60.000 0.00 0.00 37.95 4.06
5090 10643 1.968050 GCAAACTAGCCTCCGCCCTA 61.968 60.000 0.00 0.00 34.57 3.53
5108 10661 2.353803 CCTAAGTCTCGTGGAAGTTGGG 60.354 54.545 0.00 0.00 0.00 4.12
5128 10681 0.459585 TTCTCCCGTGATTAGCGTGC 60.460 55.000 0.00 0.00 0.00 5.34
5132 10685 0.179121 CCCGTGATTAGCGTGCACTA 60.179 55.000 16.19 0.00 0.00 2.74
5133 10686 0.921347 CCGTGATTAGCGTGCACTAC 59.079 55.000 16.19 6.97 0.00 2.73
5209 10762 0.869454 CTGCTCTTCGATCGTGCTCC 60.869 60.000 15.94 3.16 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.699839 ACAAGCGAAGGAACAAAATGATAC 58.300 37.500 0.00 0.00 0.00 2.24
20 21 0.107410 ACCGTGGAACAGCAAGACAA 60.107 50.000 0.00 0.00 41.80 3.18
58 59 3.209410 AGTATGCAAATGCCTAGACAGC 58.791 45.455 2.46 0.00 41.18 4.40
67 68 3.463944 ACGGTAGGTAGTATGCAAATGC 58.536 45.455 0.00 0.00 42.50 3.56
80 81 1.636148 TTTCAGTGGCTACGGTAGGT 58.364 50.000 16.43 0.00 0.00 3.08
142 143 2.095364 GCATCAGCAACAAAGAGGACAG 60.095 50.000 0.00 0.00 41.58 3.51
143 144 1.881973 GCATCAGCAACAAAGAGGACA 59.118 47.619 0.00 0.00 41.58 4.02
233 234 4.510038 AGTTTGCATTGAGACATTGGAC 57.490 40.909 0.00 0.00 0.00 4.02
263 264 1.067142 TCAGCGAGACAACCATACCAC 60.067 52.381 0.00 0.00 0.00 4.16
278 279 2.054687 ACAAAATGTGTGCATCAGCG 57.945 45.000 0.00 0.00 46.23 5.18
280 281 6.005583 ACTCTAACAAAATGTGTGCATCAG 57.994 37.500 0.00 0.00 40.60 2.90
281 282 6.347321 CGTACTCTAACAAAATGTGTGCATCA 60.347 38.462 0.00 0.00 40.60 3.07
283 284 5.468746 ACGTACTCTAACAAAATGTGTGCAT 59.531 36.000 0.00 0.00 40.60 3.96
284 285 4.812091 ACGTACTCTAACAAAATGTGTGCA 59.188 37.500 0.00 0.00 40.60 4.57
285 286 5.338614 ACGTACTCTAACAAAATGTGTGC 57.661 39.130 0.00 0.00 40.60 4.57
286 287 7.955324 CCATTACGTACTCTAACAAAATGTGTG 59.045 37.037 0.00 0.00 40.60 3.82
287 288 7.118680 CCCATTACGTACTCTAACAAAATGTGT 59.881 37.037 0.00 0.00 44.64 3.72
288 289 7.461107 CCCATTACGTACTCTAACAAAATGTG 58.539 38.462 0.00 0.00 0.00 3.21
289 290 6.093082 GCCCATTACGTACTCTAACAAAATGT 59.907 38.462 0.00 0.00 0.00 2.71
290 291 6.457799 GGCCCATTACGTACTCTAACAAAATG 60.458 42.308 0.00 0.00 0.00 2.32
291 292 5.587443 GGCCCATTACGTACTCTAACAAAAT 59.413 40.000 0.00 0.00 0.00 1.82
292 293 4.937015 GGCCCATTACGTACTCTAACAAAA 59.063 41.667 0.00 0.00 0.00 2.44
293 294 4.223477 AGGCCCATTACGTACTCTAACAAA 59.777 41.667 0.00 0.00 0.00 2.83
294 295 3.770933 AGGCCCATTACGTACTCTAACAA 59.229 43.478 0.00 0.00 0.00 2.83
295 296 3.131577 CAGGCCCATTACGTACTCTAACA 59.868 47.826 0.00 0.00 0.00 2.41
296 297 3.492137 CCAGGCCCATTACGTACTCTAAC 60.492 52.174 0.00 0.00 0.00 2.34
297 298 2.696707 CCAGGCCCATTACGTACTCTAA 59.303 50.000 0.00 0.00 0.00 2.10
298 299 2.313317 CCAGGCCCATTACGTACTCTA 58.687 52.381 0.00 0.00 0.00 2.43
299 300 1.120530 CCAGGCCCATTACGTACTCT 58.879 55.000 0.00 0.00 0.00 3.24
300 301 0.106149 CCCAGGCCCATTACGTACTC 59.894 60.000 0.00 0.00 0.00 2.59
301 302 1.979619 GCCCAGGCCCATTACGTACT 61.980 60.000 0.00 0.00 34.56 2.73
302 303 1.525306 GCCCAGGCCCATTACGTAC 60.525 63.158 0.00 0.00 34.56 3.67
303 304 1.691337 AGCCCAGGCCCATTACGTA 60.691 57.895 4.70 0.00 43.17 3.57
304 305 3.015145 AGCCCAGGCCCATTACGT 61.015 61.111 4.70 0.00 43.17 3.57
305 306 2.516930 CAGCCCAGGCCCATTACG 60.517 66.667 4.70 0.00 43.17 3.18
306 307 2.123726 CCAGCCCAGGCCCATTAC 60.124 66.667 4.70 0.00 43.17 1.89
314 315 2.743718 CTATACCGCCAGCCCAGG 59.256 66.667 0.00 0.00 0.00 4.45
315 316 2.031163 GCTATACCGCCAGCCCAG 59.969 66.667 0.00 0.00 0.00 4.45
325 326 3.509184 CCCTAAGACTAACGGGCTATACC 59.491 52.174 0.00 0.00 29.69 2.73
326 327 4.148079 ACCCTAAGACTAACGGGCTATAC 58.852 47.826 0.00 0.00 40.45 1.47
327 328 4.459852 ACCCTAAGACTAACGGGCTATA 57.540 45.455 0.00 0.00 40.45 1.31
328 329 3.325359 ACCCTAAGACTAACGGGCTAT 57.675 47.619 0.00 0.00 40.45 2.97
329 330 2.834638 ACCCTAAGACTAACGGGCTA 57.165 50.000 0.00 0.00 40.45 3.93
330 331 1.948391 AACCCTAAGACTAACGGGCT 58.052 50.000 0.00 0.00 40.45 5.19
331 332 3.893326 TTAACCCTAAGACTAACGGGC 57.107 47.619 0.00 0.00 40.45 6.13
332 333 7.286316 TCTCTAATTAACCCTAAGACTAACGGG 59.714 40.741 0.00 0.00 42.53 5.28
333 334 8.230472 TCTCTAATTAACCCTAAGACTAACGG 57.770 38.462 0.00 0.00 0.00 4.44
338 339 9.382307 CCCTTATCTCTAATTAACCCTAAGACT 57.618 37.037 0.00 0.00 0.00 3.24
339 340 9.156940 ACCCTTATCTCTAATTAACCCTAAGAC 57.843 37.037 0.00 0.00 0.00 3.01
340 341 9.377238 GACCCTTATCTCTAATTAACCCTAAGA 57.623 37.037 0.00 0.00 0.00 2.10
341 342 8.305317 CGACCCTTATCTCTAATTAACCCTAAG 58.695 40.741 0.00 0.00 0.00 2.18
342 343 7.256083 GCGACCCTTATCTCTAATTAACCCTAA 60.256 40.741 0.00 0.00 0.00 2.69
343 344 6.210185 GCGACCCTTATCTCTAATTAACCCTA 59.790 42.308 0.00 0.00 0.00 3.53
344 345 5.011840 GCGACCCTTATCTCTAATTAACCCT 59.988 44.000 0.00 0.00 0.00 4.34
345 346 5.011840 AGCGACCCTTATCTCTAATTAACCC 59.988 44.000 0.00 0.00 0.00 4.11
346 347 6.099159 AGCGACCCTTATCTCTAATTAACC 57.901 41.667 0.00 0.00 0.00 2.85
347 348 6.073711 GCAAGCGACCCTTATCTCTAATTAAC 60.074 42.308 0.00 0.00 31.00 2.01
348 349 5.989777 GCAAGCGACCCTTATCTCTAATTAA 59.010 40.000 0.00 0.00 31.00 1.40
349 350 5.304614 AGCAAGCGACCCTTATCTCTAATTA 59.695 40.000 0.00 0.00 31.00 1.40
350 351 4.101741 AGCAAGCGACCCTTATCTCTAATT 59.898 41.667 0.00 0.00 31.00 1.40
351 352 3.643792 AGCAAGCGACCCTTATCTCTAAT 59.356 43.478 0.00 0.00 31.00 1.73
352 353 3.031736 AGCAAGCGACCCTTATCTCTAA 58.968 45.455 0.00 0.00 31.00 2.10
353 354 2.667470 AGCAAGCGACCCTTATCTCTA 58.333 47.619 0.00 0.00 31.00 2.43
354 355 1.490574 AGCAAGCGACCCTTATCTCT 58.509 50.000 0.00 0.00 31.00 3.10
355 356 2.317530 AAGCAAGCGACCCTTATCTC 57.682 50.000 0.00 0.00 31.00 2.75
356 357 2.103263 CCTAAGCAAGCGACCCTTATCT 59.897 50.000 0.00 0.00 31.00 1.98
357 358 2.484889 CCTAAGCAAGCGACCCTTATC 58.515 52.381 0.00 0.00 31.00 1.75
358 359 1.141053 CCCTAAGCAAGCGACCCTTAT 59.859 52.381 0.00 0.00 31.00 1.73
359 360 0.539986 CCCTAAGCAAGCGACCCTTA 59.460 55.000 0.00 0.00 31.00 2.69
360 361 1.299976 CCCTAAGCAAGCGACCCTT 59.700 57.895 0.00 0.00 0.00 3.95
361 362 2.670148 CCCCTAAGCAAGCGACCCT 61.670 63.158 0.00 0.00 0.00 4.34
362 363 2.124695 CCCCTAAGCAAGCGACCC 60.125 66.667 0.00 0.00 0.00 4.46
363 364 1.449778 GACCCCTAAGCAAGCGACC 60.450 63.158 0.00 0.00 0.00 4.79
364 365 0.321298 TTGACCCCTAAGCAAGCGAC 60.321 55.000 0.00 0.00 0.00 5.19
365 366 0.036388 CTTGACCCCTAAGCAAGCGA 60.036 55.000 0.00 0.00 33.48 4.93
366 367 0.321653 ACTTGACCCCTAAGCAAGCG 60.322 55.000 0.00 0.00 41.97 4.68
367 368 2.781681 TACTTGACCCCTAAGCAAGC 57.218 50.000 0.00 0.00 41.97 4.01
368 369 3.010420 GCTTACTTGACCCCTAAGCAAG 58.990 50.000 0.00 0.00 41.32 4.01
369 370 2.290705 GGCTTACTTGACCCCTAAGCAA 60.291 50.000 10.04 0.00 42.79 3.91
370 371 1.280998 GGCTTACTTGACCCCTAAGCA 59.719 52.381 10.04 0.00 42.79 3.91
371 372 1.560146 AGGCTTACTTGACCCCTAAGC 59.440 52.381 0.00 0.00 41.07 3.09
387 388 0.251077 CTTGACTCCCAAGCAAGGCT 60.251 55.000 0.00 0.00 44.90 4.58
388 389 2.261215 CTTGACTCCCAAGCAAGGC 58.739 57.895 0.00 0.00 44.90 4.35
395 396 7.989947 ATATAGAGGTTTACTTGACTCCCAA 57.010 36.000 0.00 0.00 0.00 4.12
396 397 9.496710 TTTATATAGAGGTTTACTTGACTCCCA 57.503 33.333 0.00 0.00 0.00 4.37
397 398 9.984190 CTTTATATAGAGGTTTACTTGACTCCC 57.016 37.037 0.00 0.00 0.00 4.30
421 422 9.709495 GCTTGATTAGATTGATACATCTCTCTT 57.291 33.333 0.00 0.00 0.00 2.85
422 423 8.868103 TGCTTGATTAGATTGATACATCTCTCT 58.132 33.333 0.00 0.00 0.00 3.10
423 424 9.486497 TTGCTTGATTAGATTGATACATCTCTC 57.514 33.333 0.00 0.00 0.00 3.20
424 425 9.491675 CTTGCTTGATTAGATTGATACATCTCT 57.508 33.333 0.00 0.00 0.00 3.10
425 426 9.486497 TCTTGCTTGATTAGATTGATACATCTC 57.514 33.333 0.00 0.00 0.00 2.75
426 427 9.842775 TTCTTGCTTGATTAGATTGATACATCT 57.157 29.630 0.00 0.00 0.00 2.90
436 437 9.911788 TCCTTCTTAATTCTTGCTTGATTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
437 438 9.739276 TTCCTTCTTAATTCTTGCTTGATTAGA 57.261 29.630 0.00 0.00 0.00 2.10
440 441 9.866798 GATTTCCTTCTTAATTCTTGCTTGATT 57.133 29.630 0.00 0.00 0.00 2.57
441 442 8.473219 GGATTTCCTTCTTAATTCTTGCTTGAT 58.527 33.333 0.00 0.00 0.00 2.57
442 443 7.093771 GGGATTTCCTTCTTAATTCTTGCTTGA 60.094 37.037 0.00 0.00 35.95 3.02
443 444 7.038048 GGGATTTCCTTCTTAATTCTTGCTTG 58.962 38.462 0.00 0.00 35.95 4.01
444 445 6.956435 AGGGATTTCCTTCTTAATTCTTGCTT 59.044 34.615 0.00 0.00 45.47 3.91
445 446 6.497640 AGGGATTTCCTTCTTAATTCTTGCT 58.502 36.000 0.00 0.00 45.47 3.91
446 447 6.782082 AGGGATTTCCTTCTTAATTCTTGC 57.218 37.500 0.00 0.00 45.47 4.01
461 462 1.686428 GGGCAAGAGGGAAGGGATTTC 60.686 57.143 0.00 0.00 34.93 2.17
462 463 0.336392 GGGCAAGAGGGAAGGGATTT 59.664 55.000 0.00 0.00 0.00 2.17
463 464 1.926426 CGGGCAAGAGGGAAGGGATT 61.926 60.000 0.00 0.00 0.00 3.01
464 465 2.378634 CGGGCAAGAGGGAAGGGAT 61.379 63.158 0.00 0.00 0.00 3.85
465 466 3.009115 CGGGCAAGAGGGAAGGGA 61.009 66.667 0.00 0.00 0.00 4.20
466 467 4.115199 CCGGGCAAGAGGGAAGGG 62.115 72.222 0.00 0.00 0.00 3.95
467 468 4.803908 GCCGGGCAAGAGGGAAGG 62.804 72.222 15.62 0.00 0.00 3.46
468 469 4.803908 GGCCGGGCAAGAGGGAAG 62.804 72.222 25.33 0.00 0.00 3.46
507 508 4.154347 GAGGGTGCGAGAGGGCTG 62.154 72.222 0.00 0.00 0.00 4.85
510 511 2.685380 AAGGAGGGTGCGAGAGGG 60.685 66.667 0.00 0.00 0.00 4.30
511 512 0.395862 TAGAAGGAGGGTGCGAGAGG 60.396 60.000 0.00 0.00 0.00 3.69
512 513 1.028905 CTAGAAGGAGGGTGCGAGAG 58.971 60.000 0.00 0.00 0.00 3.20
513 514 1.038130 GCTAGAAGGAGGGTGCGAGA 61.038 60.000 0.00 0.00 0.00 4.04
514 515 1.439644 GCTAGAAGGAGGGTGCGAG 59.560 63.158 0.00 0.00 0.00 5.03
515 516 2.415608 CGCTAGAAGGAGGGTGCGA 61.416 63.158 0.00 0.00 45.15 5.10
516 517 2.105128 CGCTAGAAGGAGGGTGCG 59.895 66.667 0.00 0.00 37.57 5.34
517 518 2.202946 GCGCTAGAAGGAGGGTGC 60.203 66.667 0.00 0.00 0.00 5.01
518 519 2.359169 TGGCGCTAGAAGGAGGGTG 61.359 63.158 7.64 0.00 0.00 4.61
519 520 2.038975 TGGCGCTAGAAGGAGGGT 59.961 61.111 7.64 0.00 0.00 4.34
520 521 1.617947 AAGTGGCGCTAGAAGGAGGG 61.618 60.000 7.64 0.00 0.00 4.30
521 522 0.179097 GAAGTGGCGCTAGAAGGAGG 60.179 60.000 7.64 0.00 0.00 4.30
522 523 0.179097 GGAAGTGGCGCTAGAAGGAG 60.179 60.000 7.64 0.00 0.00 3.69
523 524 1.614241 GGGAAGTGGCGCTAGAAGGA 61.614 60.000 7.64 0.00 0.00 3.36
524 525 1.153349 GGGAAGTGGCGCTAGAAGG 60.153 63.158 7.64 0.00 0.00 3.46
525 526 1.519455 CGGGAAGTGGCGCTAGAAG 60.519 63.158 7.64 0.00 0.00 2.85
526 527 2.577059 CGGGAAGTGGCGCTAGAA 59.423 61.111 7.64 0.00 0.00 2.10
527 528 3.458163 CCGGGAAGTGGCGCTAGA 61.458 66.667 7.64 0.00 0.00 2.43
572 573 4.214327 GAAGGAGGGCGCGAGAGG 62.214 72.222 12.10 0.00 0.00 3.69
573 574 1.791103 CTAGAAGGAGGGCGCGAGAG 61.791 65.000 12.10 0.00 0.00 3.20
574 575 1.824329 CTAGAAGGAGGGCGCGAGA 60.824 63.158 12.10 0.00 0.00 4.04
575 576 2.725008 CTAGAAGGAGGGCGCGAG 59.275 66.667 12.10 0.00 0.00 5.03
576 577 3.528370 GCTAGAAGGAGGGCGCGA 61.528 66.667 12.10 0.00 0.00 5.87
577 578 3.781770 CTGCTAGAAGGAGGGCGCG 62.782 68.421 0.00 0.00 29.18 6.86
578 579 2.107953 CTGCTAGAAGGAGGGCGC 59.892 66.667 0.00 0.00 29.18 6.53
579 580 2.107953 GCTGCTAGAAGGAGGGCG 59.892 66.667 0.00 0.00 33.92 6.13
580 581 2.107953 CGCTGCTAGAAGGAGGGC 59.892 66.667 0.00 0.00 39.48 5.19
581 582 2.107953 GCGCTGCTAGAAGGAGGG 59.892 66.667 0.00 7.93 46.69 4.30
582 583 2.037620 ATGGCGCTGCTAGAAGGAGG 62.038 60.000 7.64 0.00 33.92 4.30
583 584 0.676184 TATGGCGCTGCTAGAAGGAG 59.324 55.000 7.64 0.00 36.68 3.69
584 585 1.119684 TTATGGCGCTGCTAGAAGGA 58.880 50.000 7.64 0.00 0.00 3.36
585 586 1.221414 GTTATGGCGCTGCTAGAAGG 58.779 55.000 7.64 0.00 0.00 3.46
586 587 1.594862 GTGTTATGGCGCTGCTAGAAG 59.405 52.381 7.64 0.00 0.00 2.85
587 588 1.066502 TGTGTTATGGCGCTGCTAGAA 60.067 47.619 7.64 0.00 0.00 2.10
588 589 0.534873 TGTGTTATGGCGCTGCTAGA 59.465 50.000 7.64 0.00 0.00 2.43
589 590 1.586422 ATGTGTTATGGCGCTGCTAG 58.414 50.000 7.64 0.00 0.00 3.42
590 591 2.036958 AATGTGTTATGGCGCTGCTA 57.963 45.000 7.64 0.00 0.00 3.49
591 592 1.176527 AAATGTGTTATGGCGCTGCT 58.823 45.000 7.64 0.00 0.00 4.24
592 593 1.655099 CAAAATGTGTTATGGCGCTGC 59.345 47.619 7.64 0.00 0.00 5.25
593 594 2.945278 ACAAAATGTGTTATGGCGCTG 58.055 42.857 7.64 0.00 37.01 5.18
620 621 1.191647 CGACACCGCTAAAACACACTC 59.808 52.381 0.00 0.00 0.00 3.51
621 622 1.214367 CGACACCGCTAAAACACACT 58.786 50.000 0.00 0.00 0.00 3.55
877 883 9.822185 AATTTGCAGGAAAATAATATGAGGTTC 57.178 29.630 0.00 0.00 0.00 3.62
1195 1218 2.852449 AGAACAGAAGGGCATAATGGGA 59.148 45.455 0.00 0.00 0.00 4.37
1280 1303 0.998669 TGCATATGTTGACAGCGACG 59.001 50.000 4.29 0.00 0.00 5.12
1544 1570 5.751509 ACGCTGAATCTGTTATTATTACGCA 59.248 36.000 0.00 0.00 0.00 5.24
1545 1571 6.074516 TGACGCTGAATCTGTTATTATTACGC 60.075 38.462 0.00 0.00 0.00 4.42
1547 1573 9.798885 GAATGACGCTGAATCTGTTATTATTAC 57.201 33.333 0.00 0.00 0.00 1.89
1707 1733 1.310216 TAACTGCATGCTGCCAGCTG 61.310 55.000 22.92 14.08 44.23 4.24
2127 2157 6.707608 TCACACAGATATAGGATTGCATGTTC 59.292 38.462 0.00 0.00 0.00 3.18
2460 7949 3.002791 TCATGCTGATTTCCTGTCGAAC 58.997 45.455 0.00 0.00 0.00 3.95
2845 8339 2.294979 GTGTTCTCCCTCCGTTTTTGT 58.705 47.619 0.00 0.00 0.00 2.83
2870 8364 1.719780 GACACGTGTTACAGCAGCTAC 59.280 52.381 24.26 0.85 0.00 3.58
2924 8418 2.494445 GCCACCCAATTAAGCCGC 59.506 61.111 0.00 0.00 0.00 6.53
2942 8436 1.024271 TTTGCATATCCCGCTTCTGC 58.976 50.000 0.00 0.00 0.00 4.26
2950 8444 6.701400 ACGAGCATTTAAATTTTGCATATCCC 59.299 34.615 14.13 0.00 38.84 3.85
2955 8449 8.700722 TTCATACGAGCATTTAAATTTTGCAT 57.299 26.923 14.13 3.93 38.84 3.96
3068 8562 3.684788 CGTAGCCTGCAGACAAGTTAATT 59.315 43.478 17.39 0.00 0.00 1.40
3127 8622 8.312669 ACTTTTACCTGATCTTCTATAGCACT 57.687 34.615 0.00 0.00 0.00 4.40
3184 8679 6.276847 AGAACCAGCGAGATATAACAGAAAG 58.723 40.000 0.00 0.00 0.00 2.62
3187 8682 5.127194 ACAAGAACCAGCGAGATATAACAGA 59.873 40.000 0.00 0.00 0.00 3.41
3188 8683 5.352284 ACAAGAACCAGCGAGATATAACAG 58.648 41.667 0.00 0.00 0.00 3.16
3189 8684 5.339008 ACAAGAACCAGCGAGATATAACA 57.661 39.130 0.00 0.00 0.00 2.41
3190 8685 4.745620 GGACAAGAACCAGCGAGATATAAC 59.254 45.833 0.00 0.00 0.00 1.89
3191 8686 4.202223 GGGACAAGAACCAGCGAGATATAA 60.202 45.833 0.00 0.00 0.00 0.98
3192 8687 3.321111 GGGACAAGAACCAGCGAGATATA 59.679 47.826 0.00 0.00 0.00 0.86
3193 8688 2.103263 GGGACAAGAACCAGCGAGATAT 59.897 50.000 0.00 0.00 0.00 1.63
3194 8689 1.480954 GGGACAAGAACCAGCGAGATA 59.519 52.381 0.00 0.00 0.00 1.98
3195 8690 0.250513 GGGACAAGAACCAGCGAGAT 59.749 55.000 0.00 0.00 0.00 2.75
3196 8691 1.671742 GGGACAAGAACCAGCGAGA 59.328 57.895 0.00 0.00 0.00 4.04
3197 8692 1.376037 GGGGACAAGAACCAGCGAG 60.376 63.158 0.00 0.00 0.00 5.03
3213 8708 7.821846 GCAGGAGAGATTAAAACAGATATAGGG 59.178 40.741 0.00 0.00 0.00 3.53
3277 8772 9.786105 GACATTTAGTTACAGAGGTAGTACTTC 57.214 37.037 0.00 4.28 0.00 3.01
3425 8920 8.181573 CACAGTAAGCAAACAAAGAACTAAAGA 58.818 33.333 0.00 0.00 0.00 2.52
3487 8982 5.590530 AAAAATGTGTTGACTGTTGGCTA 57.409 34.783 0.00 0.00 0.00 3.93
3573 9084 0.827368 TTGCAACCAAACCAGTTCCC 59.173 50.000 0.00 0.00 0.00 3.97
3689 9200 7.226441 TGGAACTGTAGATAATAGCATGCATT 58.774 34.615 21.98 18.36 0.00 3.56
3740 9251 7.255381 GCTATGCTCAATTAACCATCATTCACT 60.255 37.037 0.00 0.00 0.00 3.41
3768 9279 1.676746 ATTCCATGCACAGCTAGCAG 58.323 50.000 18.83 12.15 46.36 4.24
3815 9326 7.876582 ACATTTTTAGGTACCTCTCTGTTACAC 59.123 37.037 20.32 0.00 0.00 2.90
3832 9343 8.475331 AGGTGTACGATGTAGAACATTTTTAG 57.525 34.615 0.00 0.00 39.27 1.85
3844 9355 4.399934 TGCTGTATGAAGGTGTACGATGTA 59.600 41.667 0.00 0.00 0.00 2.29
3863 9374 8.725148 ACTCTTCTTATGTTAATTTGTCTGCTG 58.275 33.333 0.00 0.00 0.00 4.41
3888 9399 2.418334 CCTACTCCGGCTGTTCCTTAAC 60.418 54.545 0.00 0.00 36.07 2.01
3899 9410 1.048601 TCCATGATTCCTACTCCGGC 58.951 55.000 0.00 0.00 0.00 6.13
3900 9411 3.324846 TCAATCCATGATTCCTACTCCGG 59.675 47.826 0.00 0.00 31.50 5.14
3919 9430 6.538742 TGGAAAATTTGGCGTTTAACAATCAA 59.461 30.769 0.00 0.00 0.00 2.57
3950 9461 6.998258 ATTCAAAGCTCAAATCAGAAAACG 57.002 33.333 0.00 0.00 0.00 3.60
3951 9462 9.630098 TCATATTCAAAGCTCAAATCAGAAAAC 57.370 29.630 0.00 0.00 0.00 2.43
3979 9490 4.523173 AGAGACAGTTTAATCAGGTCGTCA 59.477 41.667 0.00 0.00 33.84 4.35
3980 9491 4.859798 CAGAGACAGTTTAATCAGGTCGTC 59.140 45.833 0.00 0.00 33.84 4.20
3989 9500 8.409358 AATTAAAGGTGCAGAGACAGTTTAAT 57.591 30.769 0.00 0.00 34.43 1.40
4022 9533 3.414549 TGACGGCACTGTTTTCTTTTC 57.585 42.857 0.00 0.00 0.00 2.29
4072 9583 5.705441 GGACAATGGTACTTTCATCACAAGA 59.295 40.000 0.00 0.00 0.00 3.02
4073 9584 5.707298 AGGACAATGGTACTTTCATCACAAG 59.293 40.000 0.00 0.00 32.99 3.16
4074 9585 5.473162 CAGGACAATGGTACTTTCATCACAA 59.527 40.000 0.00 0.00 35.42 3.33
4162 9674 1.039068 CATCGCCCTCACTGAGATCT 58.961 55.000 7.69 0.00 0.00 2.75
4163 9675 1.035923 TCATCGCCCTCACTGAGATC 58.964 55.000 7.69 0.00 0.00 2.75
4171 9683 1.134699 GTCTTCACATCATCGCCCTCA 60.135 52.381 0.00 0.00 0.00 3.86
4176 9688 4.871993 ATCAAAGTCTTCACATCATCGC 57.128 40.909 0.00 0.00 0.00 4.58
4219 9734 0.894141 GCCTGAGTGAGCTGAGAAGA 59.106 55.000 0.00 0.00 0.00 2.87
4220 9735 0.896923 AGCCTGAGTGAGCTGAGAAG 59.103 55.000 0.00 0.00 38.11 2.85
4221 9736 3.063915 AGCCTGAGTGAGCTGAGAA 57.936 52.632 0.00 0.00 38.11 2.87
4246 9761 3.377439 GGGGTAAAAAGAAACAGCGTTG 58.623 45.455 0.00 0.00 0.00 4.10
4272 9787 2.774809 AGGAGAGGGAGCTAAACAATCC 59.225 50.000 0.00 0.00 0.00 3.01
4275 9790 2.621070 ACAGGAGAGGGAGCTAAACAA 58.379 47.619 0.00 0.00 0.00 2.83
4284 9799 3.583228 TCACAGTTTTACAGGAGAGGGA 58.417 45.455 0.00 0.00 0.00 4.20
4301 9816 5.645497 CCCACAAAAACAAAAGGAAATCACA 59.355 36.000 0.00 0.00 0.00 3.58
4302 9817 5.877564 TCCCACAAAAACAAAAGGAAATCAC 59.122 36.000 0.00 0.00 0.00 3.06
4303 9818 6.054860 TCCCACAAAAACAAAAGGAAATCA 57.945 33.333 0.00 0.00 0.00 2.57
4304 9819 6.597672 ACTTCCCACAAAAACAAAAGGAAATC 59.402 34.615 0.00 0.00 31.87 2.17
4305 9820 6.480763 ACTTCCCACAAAAACAAAAGGAAAT 58.519 32.000 0.00 0.00 31.87 2.17
4306 9821 5.870706 ACTTCCCACAAAAACAAAAGGAAA 58.129 33.333 0.00 0.00 31.87 3.13
4307 9822 5.491323 ACTTCCCACAAAAACAAAAGGAA 57.509 34.783 0.00 0.00 0.00 3.36
4308 9823 6.607004 TTACTTCCCACAAAAACAAAAGGA 57.393 33.333 0.00 0.00 0.00 3.36
4309 9824 7.389330 AGTTTTACTTCCCACAAAAACAAAAGG 59.611 33.333 10.93 0.00 41.85 3.11
4310 9825 8.227119 CAGTTTTACTTCCCACAAAAACAAAAG 58.773 33.333 10.93 0.00 41.85 2.27
4311 9826 7.715686 ACAGTTTTACTTCCCACAAAAACAAAA 59.284 29.630 10.93 0.00 41.85 2.44
4312 9827 7.217906 ACAGTTTTACTTCCCACAAAAACAAA 58.782 30.769 10.93 0.00 41.85 2.83
4313 9828 6.760291 ACAGTTTTACTTCCCACAAAAACAA 58.240 32.000 10.93 0.00 41.85 2.83
4314 9829 6.347859 ACAGTTTTACTTCCCACAAAAACA 57.652 33.333 10.93 0.00 41.85 2.83
4315 9830 7.764331 TCTACAGTTTTACTTCCCACAAAAAC 58.236 34.615 0.00 0.00 40.46 2.43
4316 9831 7.941431 TCTACAGTTTTACTTCCCACAAAAA 57.059 32.000 0.00 0.00 0.00 1.94
4317 9832 7.612633 AGTTCTACAGTTTTACTTCCCACAAAA 59.387 33.333 0.00 0.00 0.00 2.44
4318 9833 7.066525 CAGTTCTACAGTTTTACTTCCCACAAA 59.933 37.037 0.00 0.00 0.00 2.83
4319 9834 6.540914 CAGTTCTACAGTTTTACTTCCCACAA 59.459 38.462 0.00 0.00 0.00 3.33
4320 9835 6.053005 CAGTTCTACAGTTTTACTTCCCACA 58.947 40.000 0.00 0.00 0.00 4.17
4321 9836 6.018180 CACAGTTCTACAGTTTTACTTCCCAC 60.018 42.308 0.00 0.00 0.00 4.61
4322 9837 6.053005 CACAGTTCTACAGTTTTACTTCCCA 58.947 40.000 0.00 0.00 0.00 4.37
4323 9838 6.285990 TCACAGTTCTACAGTTTTACTTCCC 58.714 40.000 0.00 0.00 0.00 3.97
4324 9839 7.964604 ATCACAGTTCTACAGTTTTACTTCC 57.035 36.000 0.00 0.00 0.00 3.46
4325 9840 9.865484 GAAATCACAGTTCTACAGTTTTACTTC 57.135 33.333 0.00 0.00 0.00 3.01
4326 9841 9.614792 AGAAATCACAGTTCTACAGTTTTACTT 57.385 29.630 0.00 0.00 33.53 2.24
4327 9842 9.614792 AAGAAATCACAGTTCTACAGTTTTACT 57.385 29.630 0.00 0.00 34.19 2.24
4328 9843 9.865484 GAAGAAATCACAGTTCTACAGTTTTAC 57.135 33.333 0.00 0.00 34.19 2.01
4329 9844 9.607988 TGAAGAAATCACAGTTCTACAGTTTTA 57.392 29.630 0.00 0.00 34.19 1.52
4330 9845 8.506168 TGAAGAAATCACAGTTCTACAGTTTT 57.494 30.769 0.00 0.00 34.19 2.43
4331 9846 7.770897 ACTGAAGAAATCACAGTTCTACAGTTT 59.229 33.333 0.00 0.00 41.21 2.66
4332 9847 7.275920 ACTGAAGAAATCACAGTTCTACAGTT 58.724 34.615 0.00 0.00 41.21 3.16
4333 9848 6.821388 ACTGAAGAAATCACAGTTCTACAGT 58.179 36.000 0.00 0.00 41.21 3.55
4334 9849 8.994429 ATACTGAAGAAATCACAGTTCTACAG 57.006 34.615 14.75 0.00 43.27 2.74
4335 9850 9.424319 GAATACTGAAGAAATCACAGTTCTACA 57.576 33.333 14.75 2.49 43.27 2.74
4336 9851 9.646427 AGAATACTGAAGAAATCACAGTTCTAC 57.354 33.333 14.75 7.84 43.27 2.59
4340 9855 9.950496 ACATAGAATACTGAAGAAATCACAGTT 57.050 29.630 14.75 3.11 43.27 3.16
4341 9856 9.376075 CACATAGAATACTGAAGAAATCACAGT 57.624 33.333 14.24 14.24 45.06 3.55
4342 9857 8.333908 GCACATAGAATACTGAAGAAATCACAG 58.666 37.037 0.00 0.00 37.62 3.66
4343 9858 8.043113 AGCACATAGAATACTGAAGAAATCACA 58.957 33.333 0.00 0.00 33.47 3.58
4359 9874 4.716784 ACCTCCATCTAACAGCACATAGAA 59.283 41.667 0.00 0.00 32.27 2.10
4388 9905 0.402504 ACATACGGCTTGGGGTTCAA 59.597 50.000 0.00 0.00 0.00 2.69
4389 9906 1.277579 TACATACGGCTTGGGGTTCA 58.722 50.000 0.00 0.00 0.00 3.18
4390 9907 2.632987 ATACATACGGCTTGGGGTTC 57.367 50.000 0.00 0.00 0.00 3.62
4393 9910 2.774687 GGTTATACATACGGCTTGGGG 58.225 52.381 0.00 0.00 0.00 4.96
4395 9912 2.409975 CCGGTTATACATACGGCTTGG 58.590 52.381 0.00 0.00 39.85 3.61
4401 9918 1.057636 CTGCGCCGGTTATACATACG 58.942 55.000 4.18 0.00 0.00 3.06
4402 9919 0.788391 GCTGCGCCGGTTATACATAC 59.212 55.000 4.18 0.00 0.00 2.39
4403 9920 0.677288 AGCTGCGCCGGTTATACATA 59.323 50.000 4.18 0.00 0.00 2.29
4404 9921 0.600255 GAGCTGCGCCGGTTATACAT 60.600 55.000 4.18 0.00 0.00 2.29
4405 9922 1.227147 GAGCTGCGCCGGTTATACA 60.227 57.895 4.18 0.00 0.00 2.29
4406 9923 1.954651 GGAGCTGCGCCGGTTATAC 60.955 63.158 6.68 0.00 0.00 1.47
4407 9924 0.824595 TAGGAGCTGCGCCGGTTATA 60.825 55.000 16.78 0.48 0.00 0.98
4408 9925 2.131709 TAGGAGCTGCGCCGGTTAT 61.132 57.895 16.78 1.50 0.00 1.89
4409 9926 2.756691 TAGGAGCTGCGCCGGTTA 60.757 61.111 16.78 1.23 0.00 2.85
4410 9927 4.452733 GTAGGAGCTGCGCCGGTT 62.453 66.667 16.78 2.26 0.00 4.44
4413 9930 3.665675 AAAGGTAGGAGCTGCGCCG 62.666 63.158 16.78 0.00 0.00 6.46
4414 9931 2.109126 CAAAGGTAGGAGCTGCGCC 61.109 63.158 15.06 15.06 0.00 6.53
4415 9932 0.108329 TACAAAGGTAGGAGCTGCGC 60.108 55.000 0.00 0.00 0.00 6.09
4416 9933 1.204941 AGTACAAAGGTAGGAGCTGCG 59.795 52.381 0.00 0.00 0.00 5.18
4417 9934 2.418884 GGAGTACAAAGGTAGGAGCTGC 60.419 54.545 0.00 0.00 0.00 5.25
4418 9935 2.168728 GGGAGTACAAAGGTAGGAGCTG 59.831 54.545 0.00 0.00 0.00 4.24
4419 9936 2.044630 AGGGAGTACAAAGGTAGGAGCT 59.955 50.000 0.00 0.00 0.00 4.09
4420 9937 2.431419 GAGGGAGTACAAAGGTAGGAGC 59.569 54.545 0.00 0.00 0.00 4.70
4421 9938 3.032459 GGAGGGAGTACAAAGGTAGGAG 58.968 54.545 0.00 0.00 0.00 3.69
4422 9939 2.622452 CGGAGGGAGTACAAAGGTAGGA 60.622 54.545 0.00 0.00 0.00 2.94
4423 9940 1.755380 CGGAGGGAGTACAAAGGTAGG 59.245 57.143 0.00 0.00 0.00 3.18
4424 9941 2.426381 GACGGAGGGAGTACAAAGGTAG 59.574 54.545 0.00 0.00 0.00 3.18
4425 9942 2.450476 GACGGAGGGAGTACAAAGGTA 58.550 52.381 0.00 0.00 0.00 3.08
4426 9943 1.264295 GACGGAGGGAGTACAAAGGT 58.736 55.000 0.00 0.00 0.00 3.50
4427 9944 0.535797 GGACGGAGGGAGTACAAAGG 59.464 60.000 0.00 0.00 0.00 3.11
4428 9945 0.172803 CGGACGGAGGGAGTACAAAG 59.827 60.000 0.00 0.00 0.00 2.77
4429 9946 1.252904 CCGGACGGAGGGAGTACAAA 61.253 60.000 4.40 0.00 37.50 2.83
4430 9947 1.679977 CCGGACGGAGGGAGTACAA 60.680 63.158 4.40 0.00 37.50 2.41
4431 9948 2.044650 CCGGACGGAGGGAGTACA 60.045 66.667 4.40 0.00 37.50 2.90
4432 9949 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
4433 9950 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4434 9951 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4435 9952 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4436 9953 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4437 9954 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4438 9955 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4439 9956 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4440 9957 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4441 9958 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4442 9959 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4443 9960 5.411669 AGTTTGATGACAAGTATTTCCGGAC 59.588 40.000 1.83 0.00 37.32 4.79
4444 9961 5.556915 AGTTTGATGACAAGTATTTCCGGA 58.443 37.500 0.00 0.00 37.32 5.14
4445 9962 5.880054 AGTTTGATGACAAGTATTTCCGG 57.120 39.130 0.00 0.00 37.32 5.14
4446 9963 7.827819 TCTAGTTTGATGACAAGTATTTCCG 57.172 36.000 0.00 0.00 37.32 4.30
4453 9970 9.442047 CTCCTTTTATCTAGTTTGATGACAAGT 57.558 33.333 0.00 0.00 37.32 3.16
4454 9971 9.658799 TCTCCTTTTATCTAGTTTGATGACAAG 57.341 33.333 0.00 0.00 37.32 3.16
4456 9973 9.605275 CATCTCCTTTTATCTAGTTTGATGACA 57.395 33.333 0.00 0.00 32.05 3.58
4457 9974 9.606631 ACATCTCCTTTTATCTAGTTTGATGAC 57.393 33.333 0.00 0.00 33.85 3.06
4513 10030 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
4521 10038 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4522 10039 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4523 10040 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4524 10041 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4525 10042 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4526 10043 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4527 10044 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4528 10045 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4529 10046 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4530 10047 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4531 10048 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4532 10049 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
4533 10050 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4534 10051 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4535 10052 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4536 10053 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4537 10054 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4538 10055 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4539 10056 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4540 10057 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
4541 10058 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
4542 10059 1.308069 CGTACTCCCTCCGTCCGAAA 61.308 60.000 0.00 0.00 0.00 3.46
4543 10060 1.746615 CGTACTCCCTCCGTCCGAA 60.747 63.158 0.00 0.00 0.00 4.30
4544 10061 2.124983 CGTACTCCCTCCGTCCGA 60.125 66.667 0.00 0.00 0.00 4.55
4545 10062 2.437359 ACGTACTCCCTCCGTCCG 60.437 66.667 0.00 0.00 0.00 4.79
4546 10063 1.377725 TCACGTACTCCCTCCGTCC 60.378 63.158 0.00 0.00 31.46 4.79
4547 10064 0.676151 AGTCACGTACTCCCTCCGTC 60.676 60.000 0.00 0.00 30.33 4.79
4548 10065 0.251077 AAGTCACGTACTCCCTCCGT 60.251 55.000 0.00 0.00 37.50 4.69
4549 10066 0.170561 CAAGTCACGTACTCCCTCCG 59.829 60.000 0.00 0.00 37.50 4.63
4550 10067 0.531200 CCAAGTCACGTACTCCCTCC 59.469 60.000 0.00 0.00 37.50 4.30
4551 10068 1.067776 CACCAAGTCACGTACTCCCTC 60.068 57.143 0.00 0.00 37.50 4.30
4552 10069 0.966920 CACCAAGTCACGTACTCCCT 59.033 55.000 0.00 0.00 37.50 4.20
4553 10070 0.677842 ACACCAAGTCACGTACTCCC 59.322 55.000 0.00 0.00 37.50 4.30
4554 10071 2.061740 GACACCAAGTCACGTACTCC 57.938 55.000 0.00 0.00 46.77 3.85
4572 10089 1.752694 GCCTAGCCAAATTGCCGGA 60.753 57.895 5.05 0.00 0.00 5.14
4574 10091 1.139520 GTGCCTAGCCAAATTGCCG 59.860 57.895 0.00 0.00 0.00 5.69
4609 10126 7.822161 TGTATTTATGGAATGGGAAGACATG 57.178 36.000 0.00 0.00 0.00 3.21
4650 10167 5.759506 TCAAATGGAGAAAAACGTAGCAA 57.240 34.783 0.00 0.00 0.00 3.91
4653 10170 8.837059 CGTAAATTCAAATGGAGAAAAACGTAG 58.163 33.333 0.00 0.00 0.00 3.51
4655 10172 6.639279 CCGTAAATTCAAATGGAGAAAAACGT 59.361 34.615 0.00 0.00 31.95 3.99
4670 10187 7.390996 TGGACTAAATTAAGTGCCGTAAATTCA 59.609 33.333 0.00 0.00 37.04 2.57
4678 10195 4.634004 TCACATGGACTAAATTAAGTGCCG 59.366 41.667 0.00 0.00 37.04 5.69
4682 10199 7.327975 TCATCGTCACATGGACTAAATTAAGT 58.672 34.615 11.12 0.00 44.68 2.24
4686 10203 8.612619 GTTAATCATCGTCACATGGACTAAATT 58.387 33.333 11.12 8.02 44.68 1.82
4697 10214 8.940952 TCAAACAATATGTTAATCATCGTCACA 58.059 29.630 0.00 0.00 40.14 3.58
4724 10241 7.436080 GTCAAGCAAATTCTTCAATGTCTCAAA 59.564 33.333 0.00 0.00 0.00 2.69
4782 10299 2.575993 CCAGGACGCTGACAGGAG 59.424 66.667 4.26 0.00 0.00 3.69
4785 10302 3.655810 GAGCCCAGGACGCTGACAG 62.656 68.421 0.00 0.00 36.48 3.51
4815 10332 2.508887 GACGAGGCTCAGCAGCTG 60.509 66.667 17.10 17.10 46.03 4.24
4830 10347 1.654954 TTACAGCGAGGAGGCGAGAC 61.655 60.000 0.00 0.00 38.18 3.36
4832 10349 0.103208 ATTTACAGCGAGGAGGCGAG 59.897 55.000 0.00 0.00 38.18 5.03
4857 10374 1.177256 AAGGGTCTAGCACACGACGT 61.177 55.000 0.00 0.00 31.20 4.34
4867 10384 4.467795 TGAACTGAGGAATCAAGGGTCTAG 59.532 45.833 0.00 0.00 0.00 2.43
4879 10396 1.347707 AGCGGAATGTGAACTGAGGAA 59.652 47.619 0.00 0.00 0.00 3.36
4883 10400 0.396435 ACCAGCGGAATGTGAACTGA 59.604 50.000 1.50 0.00 0.00 3.41
4886 10403 1.523758 AGAACCAGCGGAATGTGAAC 58.476 50.000 1.50 0.00 0.00 3.18
4888 10405 1.071542 TGAAGAACCAGCGGAATGTGA 59.928 47.619 1.50 0.00 0.00 3.58
4903 10420 7.548196 AGAACGTTGTAAAATGAGTTGAAGA 57.452 32.000 5.00 0.00 0.00 2.87
4920 10437 5.089892 GGAAGACCATACACGAAGAACGTT 61.090 45.833 0.00 0.00 43.94 3.99
4985 10502 8.557450 AGATAGGGCCAAATACTCTTCTAAAAA 58.443 33.333 6.18 0.00 0.00 1.94
4986 10503 8.102484 AGATAGGGCCAAATACTCTTCTAAAA 57.898 34.615 6.18 0.00 0.00 1.52
4987 10504 7.347222 TGAGATAGGGCCAAATACTCTTCTAAA 59.653 37.037 6.18 0.00 0.00 1.85
4988 10505 6.844388 TGAGATAGGGCCAAATACTCTTCTAA 59.156 38.462 6.18 0.00 0.00 2.10
4989 10506 6.382087 TGAGATAGGGCCAAATACTCTTCTA 58.618 40.000 6.18 0.00 0.00 2.10
4990 10507 5.219739 TGAGATAGGGCCAAATACTCTTCT 58.780 41.667 6.18 0.00 0.00 2.85
4991 10508 5.552870 TGAGATAGGGCCAAATACTCTTC 57.447 43.478 6.18 0.00 0.00 2.87
4992 10509 5.191722 TGTTGAGATAGGGCCAAATACTCTT 59.808 40.000 6.18 0.00 0.00 2.85
4993 10510 4.721776 TGTTGAGATAGGGCCAAATACTCT 59.278 41.667 6.18 0.00 0.00 3.24
4994 10511 5.036117 TGTTGAGATAGGGCCAAATACTC 57.964 43.478 6.18 7.15 0.00 2.59
4995 10512 5.103940 ACATGTTGAGATAGGGCCAAATACT 60.104 40.000 6.18 0.00 0.00 2.12
4996 10513 5.133221 ACATGTTGAGATAGGGCCAAATAC 58.867 41.667 6.18 0.00 0.00 1.89
5002 10555 5.010012 CCAAAATACATGTTGAGATAGGGCC 59.990 44.000 2.30 0.00 0.00 5.80
5004 10557 7.880160 TTCCAAAATACATGTTGAGATAGGG 57.120 36.000 2.30 0.00 0.00 3.53
5037 10590 0.413434 ATGGGCTTTTACCTGGGCTT 59.587 50.000 0.00 0.00 0.00 4.35
5039 10592 1.960040 GCATGGGCTTTTACCTGGGC 61.960 60.000 0.00 0.00 36.96 5.36
5040 10593 2.201927 GCATGGGCTTTTACCTGGG 58.798 57.895 0.00 0.00 36.96 4.45
5090 10643 1.129058 ACCCAACTTCCACGAGACTT 58.871 50.000 0.00 0.00 0.00 3.01
5108 10661 1.278238 CACGCTAATCACGGGAGAAC 58.722 55.000 0.00 0.00 35.45 3.01
5132 10685 1.068474 GCTGCGTCTAAATCACACGT 58.932 50.000 0.00 0.00 35.91 4.49
5133 10686 1.059692 CAGCTGCGTCTAAATCACACG 59.940 52.381 0.00 0.00 36.60 4.49
5135 10688 1.078709 GCAGCTGCGTCTAAATCACA 58.921 50.000 25.23 0.00 0.00 3.58
5136 10689 0.375106 GGCAGCTGCGTCTAAATCAC 59.625 55.000 31.19 10.45 43.26 3.06
5138 10691 1.638467 CGGCAGCTGCGTCTAAATC 59.362 57.895 31.19 14.36 43.26 2.17
5139 10692 2.464459 GCGGCAGCTGCGTCTAAAT 61.464 57.895 31.19 0.00 43.26 1.40
5140 10693 3.118454 GCGGCAGCTGCGTCTAAA 61.118 61.111 31.19 0.00 43.26 1.85
5181 10734 1.032114 TCGAAGAGCAGATCGAGGCA 61.032 55.000 8.87 0.00 42.61 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.