Multiple sequence alignment - TraesCS5B01G252800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G252800 chr5B 100.000 6360 0 0 1 6360 435769643 435776002 0.000000e+00 11745
1 TraesCS5B01G252800 chr5B 86.519 1261 164 2 969 2223 435949610 435950870 0.000000e+00 1382
2 TraesCS5B01G252800 chr5B 86.774 1240 156 4 974 2206 436078297 436079535 0.000000e+00 1375
3 TraesCS5B01G252800 chr5B 85.627 1315 178 5 908 2215 435943013 435944323 0.000000e+00 1371
4 TraesCS5B01G252800 chr5B 79.043 1880 317 45 969 2819 436153130 436154961 0.000000e+00 1218
5 TraesCS5B01G252800 chr5B 78.755 1205 182 44 4289 5467 436211417 436212573 0.000000e+00 739
6 TraesCS5B01G252800 chr5B 78.862 492 65 25 4289 4773 436154960 436155419 4.820000e-76 296
7 TraesCS5B01G252800 chr5B 76.519 362 60 17 5020 5376 436099195 436099536 2.360000e-39 174
8 TraesCS5B01G252800 chr5B 76.056 355 60 18 5020 5369 436156722 436157056 1.830000e-35 161
9 TraesCS5B01G252800 chr5A 96.373 2647 80 15 180 2819 469898096 469900733 0.000000e+00 4342
10 TraesCS5B01G252800 chr5A 96.312 1681 36 5 4288 5968 469900732 469902386 0.000000e+00 2737
11 TraesCS5B01G252800 chr5A 87.895 2280 150 39 3 2216 469905362 469907581 0.000000e+00 2566
12 TraesCS5B01G252800 chr5A 98.019 1464 29 0 2819 4282 663919298 663917835 0.000000e+00 2543
13 TraesCS5B01G252800 chr5A 86.688 1262 160 5 969 2223 470038797 470040057 0.000000e+00 1393
14 TraesCS5B01G252800 chr5A 85.769 1314 178 3 908 2215 470032940 470034250 0.000000e+00 1382
15 TraesCS5B01G252800 chr5A 86.187 1238 140 16 984 2206 470044694 470045915 0.000000e+00 1310
16 TraesCS5B01G252800 chr5A 79.312 1861 319 43 986 2819 470076966 470078787 0.000000e+00 1243
17 TraesCS5B01G252800 chr5A 77.381 756 113 37 4289 5029 470078786 470079498 4.620000e-106 396
18 TraesCS5B01G252800 chr3B 100.000 1470 0 0 2819 4288 756630082 756631551 0.000000e+00 2715
19 TraesCS5B01G252800 chr5D 99.864 1473 1 1 2819 4290 34872777 34871305 0.000000e+00 2708
20 TraesCS5B01G252800 chr5D 99.864 1470 2 0 2819 4288 484013151 484011682 0.000000e+00 2704
21 TraesCS5B01G252800 chr5D 99.864 1468 2 0 2819 4286 397002927 397004394 0.000000e+00 2700
22 TraesCS5B01G252800 chr5D 88.380 1549 148 15 685 2216 367811969 367813502 0.000000e+00 1834
23 TraesCS5B01G252800 chr5D 87.561 1230 145 4 984 2206 367996707 367997935 0.000000e+00 1417
24 TraesCS5B01G252800 chr5D 86.758 1246 159 2 984 2223 367991269 367992514 0.000000e+00 1382
25 TraesCS5B01G252800 chr5D 85.693 1314 173 4 908 2215 367981176 367982480 0.000000e+00 1371
26 TraesCS5B01G252800 chr5D 79.196 1865 313 52 986 2819 368029906 368031726 0.000000e+00 1225
27 TraesCS5B01G252800 chr5D 78.465 1876 341 34 969 2819 368079019 368080856 0.000000e+00 1168
28 TraesCS5B01G252800 chr5D 79.439 1639 287 30 969 2586 368244974 368246583 0.000000e+00 1114
29 TraesCS5B01G252800 chr5D 91.102 472 32 6 177 646 367811508 367811971 1.160000e-176 630
30 TraesCS5B01G252800 chr5D 80.167 837 123 25 4669 5483 368247495 368248310 2.550000e-163 586
31 TraesCS5B01G252800 chr5D 75.268 1120 196 55 4289 5376 368080855 368081925 5.810000e-125 459
32 TraesCS5B01G252800 chr5D 77.348 362 57 18 5020 5376 368032831 368033172 2.340000e-44 191
33 TraesCS5B01G252800 chr2B 99.864 1469 2 0 2819 4287 137809907 137808439 0.000000e+00 2702
34 TraesCS5B01G252800 chr2B 98.426 1461 23 0 2819 4279 453187734 453189194 0.000000e+00 2571
35 TraesCS5B01G252800 chr3D 99.796 1468 3 0 2819 4286 297892710 297894177 0.000000e+00 2695
36 TraesCS5B01G252800 chr1B 97.890 1469 31 0 2819 4287 670561025 670562493 0.000000e+00 2542


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G252800 chr5B 435769643 435776002 6359 False 11745.000000 11745 100.000000 1 6360 1 chr5B.!!$F1 6359
1 TraesCS5B01G252800 chr5B 435949610 435950870 1260 False 1382.000000 1382 86.519000 969 2223 1 chr5B.!!$F3 1254
2 TraesCS5B01G252800 chr5B 436078297 436079535 1238 False 1375.000000 1375 86.774000 974 2206 1 chr5B.!!$F4 1232
3 TraesCS5B01G252800 chr5B 435943013 435944323 1310 False 1371.000000 1371 85.627000 908 2215 1 chr5B.!!$F2 1307
4 TraesCS5B01G252800 chr5B 436211417 436212573 1156 False 739.000000 739 78.755000 4289 5467 1 chr5B.!!$F6 1178
5 TraesCS5B01G252800 chr5B 436153130 436157056 3926 False 558.333333 1218 77.987000 969 5369 3 chr5B.!!$F7 4400
6 TraesCS5B01G252800 chr5A 469898096 469907581 9485 False 3215.000000 4342 93.526667 3 5968 3 chr5A.!!$F4 5965
7 TraesCS5B01G252800 chr5A 663917835 663919298 1463 True 2543.000000 2543 98.019000 2819 4282 1 chr5A.!!$R1 1463
8 TraesCS5B01G252800 chr5A 470038797 470040057 1260 False 1393.000000 1393 86.688000 969 2223 1 chr5A.!!$F2 1254
9 TraesCS5B01G252800 chr5A 470032940 470034250 1310 False 1382.000000 1382 85.769000 908 2215 1 chr5A.!!$F1 1307
10 TraesCS5B01G252800 chr5A 470044694 470045915 1221 False 1310.000000 1310 86.187000 984 2206 1 chr5A.!!$F3 1222
11 TraesCS5B01G252800 chr5A 470076966 470079498 2532 False 819.500000 1243 78.346500 986 5029 2 chr5A.!!$F5 4043
12 TraesCS5B01G252800 chr3B 756630082 756631551 1469 False 2715.000000 2715 100.000000 2819 4288 1 chr3B.!!$F1 1469
13 TraesCS5B01G252800 chr5D 34871305 34872777 1472 True 2708.000000 2708 99.864000 2819 4290 1 chr5D.!!$R1 1471
14 TraesCS5B01G252800 chr5D 484011682 484013151 1469 True 2704.000000 2704 99.864000 2819 4288 1 chr5D.!!$R2 1469
15 TraesCS5B01G252800 chr5D 397002927 397004394 1467 False 2700.000000 2700 99.864000 2819 4286 1 chr5D.!!$F4 1467
16 TraesCS5B01G252800 chr5D 367996707 367997935 1228 False 1417.000000 1417 87.561000 984 2206 1 chr5D.!!$F3 1222
17 TraesCS5B01G252800 chr5D 367991269 367992514 1245 False 1382.000000 1382 86.758000 984 2223 1 chr5D.!!$F2 1239
18 TraesCS5B01G252800 chr5D 367981176 367982480 1304 False 1371.000000 1371 85.693000 908 2215 1 chr5D.!!$F1 1307
19 TraesCS5B01G252800 chr5D 367811508 367813502 1994 False 1232.000000 1834 89.741000 177 2216 2 chr5D.!!$F5 2039
20 TraesCS5B01G252800 chr5D 368244974 368248310 3336 False 850.000000 1114 79.803000 969 5483 2 chr5D.!!$F8 4514
21 TraesCS5B01G252800 chr5D 368079019 368081925 2906 False 813.500000 1168 76.866500 969 5376 2 chr5D.!!$F7 4407
22 TraesCS5B01G252800 chr5D 368029906 368033172 3266 False 708.000000 1225 78.272000 986 5376 2 chr5D.!!$F6 4390
23 TraesCS5B01G252800 chr2B 137808439 137809907 1468 True 2702.000000 2702 99.864000 2819 4287 1 chr2B.!!$R1 1468
24 TraesCS5B01G252800 chr2B 453187734 453189194 1460 False 2571.000000 2571 98.426000 2819 4279 1 chr2B.!!$F1 1460
25 TraesCS5B01G252800 chr3D 297892710 297894177 1467 False 2695.000000 2695 99.796000 2819 4286 1 chr3D.!!$F1 1467
26 TraesCS5B01G252800 chr1B 670561025 670562493 1468 False 2542.000000 2542 97.890000 2819 4287 1 chr1B.!!$F1 1468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.106015 AAACAGGGCAGCCTTGAAGT 60.106 50.000 29.54 11.46 34.05 3.01 F
138 139 0.106015 ACAGGGCAGCCTTGAAGTTT 60.106 50.000 29.54 4.03 34.05 2.66 F
581 589 0.461516 GGGCGTCTAGGGTTTGTAGC 60.462 60.000 0.00 0.00 0.00 3.58 F
1071 1088 0.464013 TTGAGCGGGTGTTTTTCGGA 60.464 50.000 0.00 0.00 0.00 4.55 F
1198 1215 1.375326 GCCCTTCTGTTCTTCCCGT 59.625 57.895 0.00 0.00 0.00 5.28 F
1302 1325 1.901833 GTGATTGGGCCTGGTGATTTT 59.098 47.619 4.53 0.00 0.00 1.82 F
1992 2041 2.474816 GATAGGATCCTCACACAACGC 58.525 52.381 20.22 0.00 0.00 4.84 F
2471 2523 4.202010 CGACGGGAAATAGGCATGAAAATT 60.202 41.667 0.00 0.00 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 1068 0.317519 CCGAAAAACACCCGCTCAAC 60.318 55.000 0.00 0.00 0.00 3.18 R
1992 2041 0.653636 AACATACGTTATTGCGGCCG 59.346 50.000 24.05 24.05 32.05 6.13 R
2378 2430 0.530211 TTTGTTGTGCACATGCCTGC 60.530 50.000 22.39 7.61 41.18 4.85 R
2584 2638 4.463539 TGCACTCAAACATTCATATGCCTT 59.536 37.500 0.00 0.00 35.03 4.35 R
2610 2909 5.414454 AGGCATGTGTTACAACAACGATAAT 59.586 36.000 0.00 0.00 41.21 1.28 R
4390 4690 9.712305 GAGCTATAGCAGAAAGGTAAAATATGA 57.288 33.333 26.07 0.00 45.16 2.15 R
5035 6518 5.303971 ACTCTGAATGTTCCTCAAGTCTTG 58.696 41.667 6.21 6.21 0.00 3.02 R
5431 6939 3.306088 CGAAAGAGCTAACAAGTCCCTCA 60.306 47.826 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.981114 AATAAGTATTTTGTGCACTAAGCTTTT 57.019 25.926 19.41 13.04 45.94 2.27
29 30 7.930513 AAGTATTTTGTGCACTAAGCTTTTC 57.069 32.000 19.41 5.71 45.94 2.29
30 31 7.277174 AGTATTTTGTGCACTAAGCTTTTCT 57.723 32.000 19.41 7.65 45.94 2.52
31 32 8.391075 AGTATTTTGTGCACTAAGCTTTTCTA 57.609 30.769 19.41 0.00 45.94 2.10
32 33 8.290325 AGTATTTTGTGCACTAAGCTTTTCTAC 58.710 33.333 19.41 9.34 45.94 2.59
33 34 6.693315 TTTTGTGCACTAAGCTTTTCTACT 57.307 33.333 19.41 0.00 45.94 2.57
34 35 6.693315 TTTGTGCACTAAGCTTTTCTACTT 57.307 33.333 19.41 0.00 45.94 2.24
35 36 5.924475 TGTGCACTAAGCTTTTCTACTTC 57.076 39.130 19.41 0.00 45.94 3.01
36 37 5.364778 TGTGCACTAAGCTTTTCTACTTCA 58.635 37.500 19.41 0.00 45.94 3.02
37 38 5.236478 TGTGCACTAAGCTTTTCTACTTCAC 59.764 40.000 19.41 3.68 45.94 3.18
38 39 5.467063 GTGCACTAAGCTTTTCTACTTCACT 59.533 40.000 10.32 0.00 45.94 3.41
39 40 5.696724 TGCACTAAGCTTTTCTACTTCACTC 59.303 40.000 3.20 0.00 45.94 3.51
40 41 5.164041 GCACTAAGCTTTTCTACTTCACTCG 60.164 44.000 3.20 0.00 41.15 4.18
41 42 5.921408 CACTAAGCTTTTCTACTTCACTCGT 59.079 40.000 3.20 0.00 0.00 4.18
42 43 5.921408 ACTAAGCTTTTCTACTTCACTCGTG 59.079 40.000 3.20 0.00 0.00 4.35
43 44 4.323553 AGCTTTTCTACTTCACTCGTGT 57.676 40.909 0.00 0.00 0.00 4.49
44 45 5.449107 AGCTTTTCTACTTCACTCGTGTA 57.551 39.130 0.00 0.00 0.00 2.90
45 46 5.462405 AGCTTTTCTACTTCACTCGTGTAG 58.538 41.667 2.66 2.66 36.09 2.74
46 47 5.009811 AGCTTTTCTACTTCACTCGTGTAGT 59.990 40.000 12.77 12.77 42.52 2.73
57 58 4.514781 ACTCGTGTAGTGAATAGTGCAA 57.485 40.909 0.00 0.00 36.93 4.08
58 59 4.878439 ACTCGTGTAGTGAATAGTGCAAA 58.122 39.130 0.00 0.00 36.93 3.68
59 60 5.479306 ACTCGTGTAGTGAATAGTGCAAAT 58.521 37.500 0.00 0.00 36.93 2.32
60 61 5.932303 ACTCGTGTAGTGAATAGTGCAAATT 59.068 36.000 0.00 0.00 36.93 1.82
61 62 6.090898 ACTCGTGTAGTGAATAGTGCAAATTC 59.909 38.462 13.60 13.60 36.93 2.17
62 63 6.163476 TCGTGTAGTGAATAGTGCAAATTCT 58.837 36.000 18.73 2.76 34.95 2.40
63 64 7.317390 TCGTGTAGTGAATAGTGCAAATTCTA 58.683 34.615 18.73 4.76 34.95 2.10
64 65 7.274904 TCGTGTAGTGAATAGTGCAAATTCTAC 59.725 37.037 18.73 14.89 34.95 2.59
65 66 7.464178 CGTGTAGTGAATAGTGCAAATTCTACC 60.464 40.741 18.73 10.18 34.95 3.18
66 67 6.821665 TGTAGTGAATAGTGCAAATTCTACCC 59.178 38.462 18.73 11.47 34.95 3.69
67 68 5.815581 AGTGAATAGTGCAAATTCTACCCA 58.184 37.500 18.73 3.90 34.95 4.51
68 69 6.426587 AGTGAATAGTGCAAATTCTACCCAT 58.573 36.000 18.73 3.92 34.95 4.00
69 70 6.319658 AGTGAATAGTGCAAATTCTACCCATG 59.680 38.462 18.73 0.00 34.95 3.66
70 71 6.318648 GTGAATAGTGCAAATTCTACCCATGA 59.681 38.462 18.73 0.25 34.95 3.07
71 72 7.013655 GTGAATAGTGCAAATTCTACCCATGAT 59.986 37.037 18.73 0.00 34.95 2.45
72 73 8.217111 TGAATAGTGCAAATTCTACCCATGATA 58.783 33.333 18.73 0.00 34.95 2.15
73 74 9.236006 GAATAGTGCAAATTCTACCCATGATAT 57.764 33.333 13.33 0.00 31.86 1.63
76 77 8.798859 AGTGCAAATTCTACCCATGATATATC 57.201 34.615 5.73 5.73 0.00 1.63
77 78 8.385491 AGTGCAAATTCTACCCATGATATATCA 58.615 33.333 17.56 17.56 41.70 2.15
78 79 9.013229 GTGCAAATTCTACCCATGATATATCAA 57.987 33.333 19.03 1.91 40.69 2.57
79 80 9.234827 TGCAAATTCTACCCATGATATATCAAG 57.765 33.333 19.03 14.47 40.69 3.02
80 81 9.236006 GCAAATTCTACCCATGATATATCAAGT 57.764 33.333 19.03 17.33 40.69 3.16
82 83 9.745018 AAATTCTACCCATGATATATCAAGTGG 57.255 33.333 21.42 21.42 40.69 4.00
102 103 3.415457 GGAACCAATGGAAAATGGCAA 57.585 42.857 6.16 0.00 40.51 4.52
103 104 3.749226 GGAACCAATGGAAAATGGCAAA 58.251 40.909 6.16 0.00 40.51 3.68
104 105 3.752747 GGAACCAATGGAAAATGGCAAAG 59.247 43.478 6.16 0.00 40.51 2.77
105 106 2.781923 ACCAATGGAAAATGGCAAAGC 58.218 42.857 6.16 0.00 40.51 3.51
115 116 3.267974 GGCAAAGCCTTCGTCCAG 58.732 61.111 0.00 0.00 46.69 3.86
116 117 1.302511 GGCAAAGCCTTCGTCCAGA 60.303 57.895 0.00 0.00 46.69 3.86
117 118 0.889186 GGCAAAGCCTTCGTCCAGAA 60.889 55.000 0.00 0.00 46.69 3.02
118 119 0.951558 GCAAAGCCTTCGTCCAGAAA 59.048 50.000 0.00 0.00 38.57 2.52
119 120 1.336755 GCAAAGCCTTCGTCCAGAAAA 59.663 47.619 0.00 0.00 38.57 2.29
120 121 2.858646 GCAAAGCCTTCGTCCAGAAAAC 60.859 50.000 0.00 0.00 38.57 2.43
121 122 2.341846 AAGCCTTCGTCCAGAAAACA 57.658 45.000 0.00 0.00 38.57 2.83
122 123 1.884235 AGCCTTCGTCCAGAAAACAG 58.116 50.000 0.00 0.00 38.57 3.16
123 124 0.875059 GCCTTCGTCCAGAAAACAGG 59.125 55.000 0.00 0.00 38.57 4.00
124 125 1.523758 CCTTCGTCCAGAAAACAGGG 58.476 55.000 0.00 0.00 38.57 4.45
125 126 0.875059 CTTCGTCCAGAAAACAGGGC 59.125 55.000 0.00 0.00 38.57 5.19
126 127 0.181587 TTCGTCCAGAAAACAGGGCA 59.818 50.000 0.00 0.00 35.61 5.36
127 128 0.250295 TCGTCCAGAAAACAGGGCAG 60.250 55.000 0.00 0.00 0.00 4.85
128 129 1.856265 CGTCCAGAAAACAGGGCAGC 61.856 60.000 0.00 0.00 0.00 5.25
129 130 1.228552 TCCAGAAAACAGGGCAGCC 60.229 57.895 1.26 1.26 0.00 4.85
130 131 1.228675 CCAGAAAACAGGGCAGCCT 60.229 57.895 12.43 0.00 0.00 4.58
131 132 0.829182 CCAGAAAACAGGGCAGCCTT 60.829 55.000 12.43 0.00 0.00 4.35
132 133 0.316204 CAGAAAACAGGGCAGCCTTG 59.684 55.000 21.84 21.84 36.63 3.61
133 134 0.185901 AGAAAACAGGGCAGCCTTGA 59.814 50.000 29.54 0.00 34.05 3.02
134 135 1.039856 GAAAACAGGGCAGCCTTGAA 58.960 50.000 29.54 0.00 34.05 2.69
135 136 1.000171 GAAAACAGGGCAGCCTTGAAG 60.000 52.381 29.54 4.05 34.05 3.02
136 137 0.106015 AAACAGGGCAGCCTTGAAGT 60.106 50.000 29.54 11.46 34.05 3.01
137 138 0.106015 AACAGGGCAGCCTTGAAGTT 60.106 50.000 29.54 11.14 34.05 2.66
138 139 0.106015 ACAGGGCAGCCTTGAAGTTT 60.106 50.000 29.54 4.03 34.05 2.66
139 140 1.043022 CAGGGCAGCCTTGAAGTTTT 58.957 50.000 18.95 0.00 31.89 2.43
140 141 2.238521 CAGGGCAGCCTTGAAGTTTTA 58.761 47.619 18.95 0.00 31.89 1.52
141 142 2.229784 CAGGGCAGCCTTGAAGTTTTAG 59.770 50.000 18.95 0.00 31.89 1.85
142 143 2.108250 AGGGCAGCCTTGAAGTTTTAGA 59.892 45.455 12.43 0.00 0.00 2.10
143 144 3.092301 GGGCAGCCTTGAAGTTTTAGAT 58.908 45.455 12.43 0.00 0.00 1.98
144 145 3.129462 GGGCAGCCTTGAAGTTTTAGATC 59.871 47.826 12.43 0.00 0.00 2.75
145 146 3.129462 GGCAGCCTTGAAGTTTTAGATCC 59.871 47.826 3.29 0.00 0.00 3.36
146 147 3.758554 GCAGCCTTGAAGTTTTAGATCCA 59.241 43.478 0.00 0.00 0.00 3.41
147 148 4.379918 GCAGCCTTGAAGTTTTAGATCCAC 60.380 45.833 0.00 0.00 0.00 4.02
148 149 4.156739 CAGCCTTGAAGTTTTAGATCCACC 59.843 45.833 0.00 0.00 0.00 4.61
149 150 4.079253 GCCTTGAAGTTTTAGATCCACCA 58.921 43.478 0.00 0.00 0.00 4.17
150 151 4.522789 GCCTTGAAGTTTTAGATCCACCAA 59.477 41.667 0.00 0.00 0.00 3.67
151 152 5.010617 GCCTTGAAGTTTTAGATCCACCAAA 59.989 40.000 0.00 0.00 0.00 3.28
152 153 6.681777 CCTTGAAGTTTTAGATCCACCAAAG 58.318 40.000 0.00 0.00 0.00 2.77
153 154 6.265422 CCTTGAAGTTTTAGATCCACCAAAGT 59.735 38.462 0.00 0.00 0.00 2.66
154 155 7.201911 CCTTGAAGTTTTAGATCCACCAAAGTT 60.202 37.037 0.00 0.00 0.00 2.66
155 156 7.272037 TGAAGTTTTAGATCCACCAAAGTTC 57.728 36.000 12.72 12.72 38.34 3.01
156 157 7.060421 TGAAGTTTTAGATCCACCAAAGTTCT 58.940 34.615 16.90 0.00 38.53 3.01
157 158 7.559897 TGAAGTTTTAGATCCACCAAAGTTCTT 59.440 33.333 16.90 8.25 38.53 2.52
158 159 7.898014 AGTTTTAGATCCACCAAAGTTCTTT 57.102 32.000 0.00 0.00 0.00 2.52
159 160 8.306313 AGTTTTAGATCCACCAAAGTTCTTTT 57.694 30.769 0.00 0.00 0.00 2.27
160 161 8.758829 AGTTTTAGATCCACCAAAGTTCTTTTT 58.241 29.630 0.00 0.00 0.00 1.94
304 312 2.125512 CGCCAGAAGGGGTCGAAG 60.126 66.667 0.00 0.00 42.60 3.79
335 343 3.573491 GGAAGCGGCGGGAAATCG 61.573 66.667 9.78 0.00 0.00 3.34
373 381 2.394506 GCCCTCCCATCCCAATCCA 61.395 63.158 0.00 0.00 0.00 3.41
410 418 1.272114 GCTCGTCTGATCCGAATCGC 61.272 60.000 0.00 0.00 34.39 4.58
414 422 1.008424 TCTGATCCGAATCGCGCTC 60.008 57.895 5.56 0.00 39.11 5.03
437 445 1.153147 GTCCTCGATGCCCCCTTTC 60.153 63.158 0.00 0.00 0.00 2.62
461 469 1.302949 CGGAATGCTTTCTCCCCCA 59.697 57.895 11.68 0.00 32.16 4.96
464 472 2.422803 CGGAATGCTTTCTCCCCCAATA 60.423 50.000 11.68 0.00 32.16 1.90
482 490 0.535335 TATCCTTCTTGTCCGCGCTT 59.465 50.000 5.56 0.00 0.00 4.68
514 522 1.818363 GGCGGCTAGGGTTTGTAGC 60.818 63.158 0.00 0.00 41.96 3.58
521 529 3.197116 GGCTAGGGTTTGTAGCTACTTGA 59.803 47.826 23.84 8.09 42.27 3.02
533 541 1.939838 GCTACTTGACGTGGTTGAGGG 60.940 57.143 0.00 0.00 0.00 4.30
581 589 0.461516 GGGCGTCTAGGGTTTGTAGC 60.462 60.000 0.00 0.00 0.00 3.58
653 661 4.750098 AGTGTTCGTTGGATTTGACAGTAG 59.250 41.667 0.00 0.00 0.00 2.57
654 662 3.496884 TGTTCGTTGGATTTGACAGTAGC 59.503 43.478 0.00 0.00 0.00 3.58
660 668 2.025981 TGGATTTGACAGTAGCCTGCAT 60.026 45.455 0.00 0.00 42.81 3.96
668 676 3.756434 GACAGTAGCCTGCATTTTTGGTA 59.244 43.478 0.00 0.00 42.81 3.25
681 689 7.092079 TGCATTTTTGGTACATGAGAGATTTG 58.908 34.615 0.00 0.00 39.30 2.32
782 796 5.889853 AGCAGAAATTTGGAGATGCTATCAA 59.110 36.000 0.00 0.00 41.90 2.57
826 843 5.866075 GGTAAATTACCTTGAAAGCGAGAC 58.134 41.667 14.59 0.00 45.52 3.36
1018 1035 9.373603 CCAAATCAATGAAGCAAATAAATGAGA 57.626 29.630 0.00 0.00 0.00 3.27
1062 1079 2.432628 GACCTCGTTGAGCGGGTG 60.433 66.667 6.59 0.00 41.74 4.61
1071 1088 0.464013 TTGAGCGGGTGTTTTTCGGA 60.464 50.000 0.00 0.00 0.00 4.55
1198 1215 1.375326 GCCCTTCTGTTCTTCCCGT 59.625 57.895 0.00 0.00 0.00 5.28
1302 1325 1.901833 GTGATTGGGCCTGGTGATTTT 59.098 47.619 4.53 0.00 0.00 1.82
1426 1449 6.013379 ACCTGTGAAGAATCTGAAAGGTGATA 60.013 38.462 4.12 0.00 0.00 2.15
1992 2041 2.474816 GATAGGATCCTCACACAACGC 58.525 52.381 20.22 0.00 0.00 4.84
2244 2296 5.572126 GCTCTCTGAGAATGAAAAATTGTGC 59.428 40.000 8.95 0.25 0.00 4.57
2312 2364 6.927416 TGCATTCAAATTGAGTTTAGCAGAT 58.073 32.000 0.00 0.00 0.00 2.90
2417 2469 6.342906 ACAAAATGGCATATGGTTCAATGAG 58.657 36.000 15.16 0.00 0.00 2.90
2471 2523 4.202010 CGACGGGAAATAGGCATGAAAATT 60.202 41.667 0.00 0.00 0.00 1.82
2584 2638 6.938507 AGGCATTAATCATTTGAAAAGCAGA 58.061 32.000 0.00 0.00 0.00 4.26
2610 2909 4.380761 GCATATGAATGTTTGAGTGCACCA 60.381 41.667 14.63 8.65 35.38 4.17
4570 4920 9.729281 ATGCAATTATTTTCCATCCCATATTTC 57.271 29.630 0.00 0.00 0.00 2.17
5109 6597 7.226918 TGTTAAATTTTCCATTTCCCGTTTTCC 59.773 33.333 0.00 0.00 0.00 3.13
5194 6684 8.419076 TCTTTTTAAAGGAACTGAAAACATGC 57.581 30.769 0.00 0.00 40.86 4.06
5231 6731 8.390921 TCCTGTAATGGGAATTCTAGACTTTTT 58.609 33.333 5.23 0.00 0.00 1.94
5299 6801 4.143543 TCATGTTTCAGATTGGTGCTTCA 58.856 39.130 0.00 0.00 0.00 3.02
5431 6939 5.355910 TCAACTCTTGCTTCTTTTTACCGTT 59.644 36.000 0.00 0.00 0.00 4.44
5453 6961 3.254892 GAGGGACTTGTTAGCTCTTTCG 58.745 50.000 0.00 0.00 41.55 3.46
5509 7017 9.632807 CCGTTATGTTTTCTCCATTTCAATTTA 57.367 29.630 0.00 0.00 0.00 1.40
5565 7073 4.472691 TTGAGACACTGAAGAATTTGCG 57.527 40.909 0.00 0.00 0.00 4.85
5612 7120 1.133792 CCAAACCAGGTTCCTGACACT 60.134 52.381 19.12 0.00 36.24 3.55
5613 7121 1.949525 CAAACCAGGTTCCTGACACTG 59.050 52.381 19.12 5.62 36.24 3.66
5614 7122 0.474184 AACCAGGTTCCTGACACTGG 59.526 55.000 19.12 7.94 45.10 4.00
5615 7123 1.376466 CCAGGTTCCTGACACTGGG 59.624 63.158 19.12 0.00 40.33 4.45
5616 7124 1.418908 CCAGGTTCCTGACACTGGGT 61.419 60.000 19.12 0.00 40.33 4.51
5617 7125 0.474184 CAGGTTCCTGACACTGGGTT 59.526 55.000 13.02 0.00 36.24 4.11
5618 7126 0.474184 AGGTTCCTGACACTGGGTTG 59.526 55.000 0.00 0.00 0.00 3.77
5619 7127 1.172812 GGTTCCTGACACTGGGTTGC 61.173 60.000 0.00 0.00 0.00 4.17
5620 7128 0.179018 GTTCCTGACACTGGGTTGCT 60.179 55.000 0.00 0.00 0.00 3.91
5621 7129 0.179020 TTCCTGACACTGGGTTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
5622 7130 1.601759 CCTGACACTGGGTTGCTGG 60.602 63.158 0.00 0.00 0.00 4.85
5623 7131 2.203337 TGACACTGGGTTGCTGGC 60.203 61.111 0.00 0.00 0.00 4.85
5624 7132 2.203337 GACACTGGGTTGCTGGCA 60.203 61.111 0.00 0.00 0.00 4.92
5663 7171 5.053811 TCTCTGTTACAATTCTGCGTTTGA 58.946 37.500 0.00 0.00 0.00 2.69
5679 7187 1.337118 TTGACTTTTGGGGTCATGGC 58.663 50.000 0.00 0.00 42.26 4.40
5691 7199 2.572290 GGTCATGGCCCAATACAGTAC 58.428 52.381 4.49 0.00 0.00 2.73
5700 7208 4.348754 GGCCCAATACAGTACCAAGGTATA 59.651 45.833 1.74 0.00 32.82 1.47
5704 7212 7.605309 GCCCAATACAGTACCAAGGTATATTAC 59.395 40.741 1.74 0.00 32.82 1.89
5705 7213 7.816031 CCCAATACAGTACCAAGGTATATTACG 59.184 40.741 1.74 0.00 32.82 3.18
5706 7214 8.362639 CCAATACAGTACCAAGGTATATTACGT 58.637 37.037 1.74 0.00 32.82 3.57
5710 7218 8.930846 ACAGTACCAAGGTATATTACGTATCT 57.069 34.615 1.74 0.00 32.82 1.98
5711 7219 9.359653 ACAGTACCAAGGTATATTACGTATCTT 57.640 33.333 1.74 0.00 32.82 2.40
5755 7263 2.100584 TGCCGGAAATATGAATTGTGGC 59.899 45.455 5.05 0.00 37.68 5.01
5756 7264 2.100584 GCCGGAAATATGAATTGTGGCA 59.899 45.455 5.05 0.00 37.38 4.92
5758 7266 4.022416 GCCGGAAATATGAATTGTGGCATA 60.022 41.667 5.05 0.00 37.38 3.14
5774 7282 2.872858 GGCATAATTCCGGTCAGAGTTC 59.127 50.000 0.00 0.00 0.00 3.01
5864 7372 0.598065 ACTGCAACGCCTCCAATTTC 59.402 50.000 0.00 0.00 0.00 2.17
5907 7415 3.694043 TGATCTTGATCCCGAAACACA 57.306 42.857 7.99 0.00 0.00 3.72
5968 7476 0.960364 ATCCACAGCGTCGCCAAATT 60.960 50.000 14.86 0.00 0.00 1.82
5969 7477 1.442520 CCACAGCGTCGCCAAATTG 60.443 57.895 14.86 7.78 0.00 2.32
5970 7478 1.573932 CACAGCGTCGCCAAATTGA 59.426 52.632 14.86 0.00 0.00 2.57
5971 7479 0.168788 CACAGCGTCGCCAAATTGAT 59.831 50.000 14.86 0.00 0.00 2.57
5972 7480 0.168788 ACAGCGTCGCCAAATTGATG 59.831 50.000 14.86 5.41 0.00 3.07
5973 7481 0.523968 CAGCGTCGCCAAATTGATGG 60.524 55.000 14.86 0.00 43.70 3.51
5981 7489 2.973694 CCAAATTGATGGCAAGGAGG 57.026 50.000 0.00 0.00 37.45 4.30
5983 7491 1.829222 CAAATTGATGGCAAGGAGGCT 59.171 47.619 0.00 0.00 44.55 4.58
5984 7492 1.481871 AATTGATGGCAAGGAGGCTG 58.518 50.000 0.00 0.00 44.55 4.85
5987 7495 1.679977 GATGGCAAGGAGGCTGCAA 60.680 57.895 9.23 0.00 44.55 4.08
5989 7497 2.598394 GGCAAGGAGGCTGCAACA 60.598 61.111 9.23 0.00 41.78 3.33
5990 7498 1.980772 GGCAAGGAGGCTGCAACAT 60.981 57.895 9.23 0.00 41.78 2.71
5994 7502 2.646930 CAAGGAGGCTGCAACATATCA 58.353 47.619 9.23 0.00 0.00 2.15
5995 7503 3.220110 CAAGGAGGCTGCAACATATCAT 58.780 45.455 9.23 0.00 0.00 2.45
5997 7505 2.440627 AGGAGGCTGCAACATATCATGA 59.559 45.455 9.23 0.00 0.00 3.07
5999 7507 3.825014 GGAGGCTGCAACATATCATGAAT 59.175 43.478 0.00 0.00 0.00 2.57
6000 7508 4.321008 GGAGGCTGCAACATATCATGAATG 60.321 45.833 0.00 7.82 0.00 2.67
6001 7509 4.466827 AGGCTGCAACATATCATGAATGA 58.533 39.130 18.66 0.00 41.70 2.57
6003 7511 5.538813 AGGCTGCAACATATCATGAATGATT 59.461 36.000 18.66 10.11 44.70 2.57
6004 7512 6.041637 AGGCTGCAACATATCATGAATGATTT 59.958 34.615 18.66 1.11 44.70 2.17
6005 7513 6.145534 GGCTGCAACATATCATGAATGATTTG 59.854 38.462 17.13 17.13 44.70 2.32
6006 7514 6.921307 GCTGCAACATATCATGAATGATTTGA 59.079 34.615 22.55 4.31 44.70 2.69
6007 7515 7.598869 GCTGCAACATATCATGAATGATTTGAT 59.401 33.333 22.55 12.96 44.70 2.57
6008 7516 9.129209 CTGCAACATATCATGAATGATTTGATC 57.871 33.333 22.55 14.04 44.70 2.92
6010 7518 9.343103 GCAACATATCATGAATGATTTGATCTC 57.657 33.333 22.55 10.19 44.70 2.75
6013 7521 7.614583 ACATATCATGAATGATTTGATCTCCCC 59.385 37.037 22.55 0.00 44.70 4.81
6014 7522 4.733165 TCATGAATGATTTGATCTCCCCC 58.267 43.478 0.00 0.00 0.00 5.40
6019 7527 0.552848 GATTTGATCTCCCCCTGCCA 59.447 55.000 0.00 0.00 0.00 4.92
6020 7528 1.009997 ATTTGATCTCCCCCTGCCAA 58.990 50.000 0.00 0.00 0.00 4.52
6021 7529 0.783206 TTTGATCTCCCCCTGCCAAA 59.217 50.000 0.00 0.00 0.00 3.28
6023 7531 1.454663 GATCTCCCCCTGCCAAAGC 60.455 63.158 0.00 0.00 40.48 3.51
6024 7532 3.350031 ATCTCCCCCTGCCAAAGCG 62.350 63.158 0.00 0.00 44.31 4.68
6028 7536 3.384532 CCCCTGCCAAAGCGCATT 61.385 61.111 11.47 0.00 44.31 3.56
6029 7537 2.182537 CCCTGCCAAAGCGCATTC 59.817 61.111 11.47 0.00 44.31 2.67
6030 7538 2.638354 CCCTGCCAAAGCGCATTCA 61.638 57.895 11.47 0.00 44.31 2.57
6031 7539 1.444895 CCTGCCAAAGCGCATTCAC 60.445 57.895 11.47 0.00 44.31 3.18
6032 7540 1.286570 CTGCCAAAGCGCATTCACA 59.713 52.632 11.47 3.23 44.31 3.58
6033 7541 0.318869 CTGCCAAAGCGCATTCACAA 60.319 50.000 11.47 0.00 44.31 3.33
6034 7542 0.103755 TGCCAAAGCGCATTCACAAA 59.896 45.000 11.47 0.00 44.31 2.83
6036 7544 1.596727 GCCAAAGCGCATTCACAAAAA 59.403 42.857 11.47 0.00 0.00 1.94
6060 7568 6.983906 AAAAGATCCATCCTCAACAACTTT 57.016 33.333 0.00 0.00 0.00 2.66
6061 7569 8.477419 AAAAAGATCCATCCTCAACAACTTTA 57.523 30.769 0.00 0.00 0.00 1.85
6067 9001 5.125900 TCCATCCTCAACAACTTTATGCATG 59.874 40.000 10.16 0.00 0.00 4.06
6071 9005 4.218200 CCTCAACAACTTTATGCATGTCCA 59.782 41.667 10.16 0.00 0.00 4.02
6073 9007 4.218200 TCAACAACTTTATGCATGTCCAGG 59.782 41.667 10.16 0.00 0.00 4.45
6074 9008 2.493278 ACAACTTTATGCATGTCCAGGC 59.507 45.455 10.16 0.00 38.80 4.85
6077 9011 2.313317 CTTTATGCATGTCCAGGCCAT 58.687 47.619 10.16 0.00 37.30 4.40
6080 9014 0.187606 ATGCATGTCCAGGCCATGAT 59.812 50.000 14.98 2.52 41.78 2.45
6083 9017 2.025344 GCATGTCCAGGCCATGATCAA 61.025 52.381 14.98 0.00 41.78 2.57
6089 9023 1.620524 CCAGGCCATGATCAAAACCCT 60.621 52.381 5.01 0.40 0.00 4.34
6090 9024 1.479323 CAGGCCATGATCAAAACCCTG 59.521 52.381 5.01 15.92 33.27 4.45
6091 9025 1.358787 AGGCCATGATCAAAACCCTGA 59.641 47.619 5.01 0.00 0.00 3.86
6092 9026 2.178580 GGCCATGATCAAAACCCTGAA 58.821 47.619 0.00 0.00 0.00 3.02
6093 9027 2.566724 GGCCATGATCAAAACCCTGAAA 59.433 45.455 0.00 0.00 0.00 2.69
6094 9028 3.198417 GGCCATGATCAAAACCCTGAAAT 59.802 43.478 0.00 0.00 0.00 2.17
6095 9029 4.436332 GCCATGATCAAAACCCTGAAATC 58.564 43.478 0.00 0.00 0.00 2.17
6096 9030 4.081531 GCCATGATCAAAACCCTGAAATCA 60.082 41.667 0.00 0.00 0.00 2.57
6097 9031 5.569227 GCCATGATCAAAACCCTGAAATCAA 60.569 40.000 0.00 0.00 0.00 2.57
6099 9033 6.592607 CCATGATCAAAACCCTGAAATCAAAG 59.407 38.462 0.00 0.00 0.00 2.77
6101 9035 3.976169 TCAAAACCCTGAAATCAAAGCG 58.024 40.909 0.00 0.00 0.00 4.68
6102 9036 3.634448 TCAAAACCCTGAAATCAAAGCGA 59.366 39.130 0.00 0.00 0.00 4.93
6104 9038 2.859165 ACCCTGAAATCAAAGCGAGA 57.141 45.000 0.00 0.00 0.00 4.04
6105 9039 3.140325 ACCCTGAAATCAAAGCGAGAA 57.860 42.857 0.00 0.00 0.00 2.87
6108 9042 3.753272 CCCTGAAATCAAAGCGAGAAAGA 59.247 43.478 0.00 0.00 0.00 2.52
6109 9043 4.378874 CCCTGAAATCAAAGCGAGAAAGAC 60.379 45.833 0.00 0.00 0.00 3.01
6117 9051 4.735132 CGAGAAAGACGCCGGCCA 62.735 66.667 23.46 0.00 0.00 5.36
6119 9053 2.125106 AGAAAGACGCCGGCCATC 60.125 61.111 23.46 19.16 0.00 3.51
6120 9054 3.202706 GAAAGACGCCGGCCATCC 61.203 66.667 23.46 7.42 0.00 3.51
6121 9055 3.682292 GAAAGACGCCGGCCATCCT 62.682 63.158 23.46 9.86 0.00 3.24
6122 9056 3.682292 AAAGACGCCGGCCATCCTC 62.682 63.158 23.46 7.73 0.00 3.71
6128 9062 2.507944 CCGGCCATCCTCCTGAAG 59.492 66.667 2.24 0.00 0.00 3.02
6129 9063 2.066393 CCGGCCATCCTCCTGAAGA 61.066 63.158 2.24 0.00 0.00 2.87
6130 9064 1.414061 CCGGCCATCCTCCTGAAGAT 61.414 60.000 2.24 0.00 0.00 2.40
6136 9070 1.069823 CATCCTCCTGAAGATGGGTCG 59.930 57.143 0.00 0.00 36.94 4.79
6137 9071 0.335019 TCCTCCTGAAGATGGGTCGA 59.665 55.000 0.00 0.00 0.00 4.20
6138 9072 1.062886 TCCTCCTGAAGATGGGTCGAT 60.063 52.381 0.00 0.00 0.00 3.59
6139 9073 2.177016 TCCTCCTGAAGATGGGTCGATA 59.823 50.000 0.00 0.00 0.00 2.92
6140 9074 3.169099 CCTCCTGAAGATGGGTCGATAT 58.831 50.000 0.00 0.00 0.00 1.63
6141 9075 3.580458 CCTCCTGAAGATGGGTCGATATT 59.420 47.826 0.00 0.00 0.00 1.28
6142 9076 4.562347 CCTCCTGAAGATGGGTCGATATTG 60.562 50.000 0.00 0.00 0.00 1.90
6144 9078 3.070018 CTGAAGATGGGTCGATATTGCC 58.930 50.000 0.00 0.00 0.00 4.52
6145 9079 2.437651 TGAAGATGGGTCGATATTGCCA 59.562 45.455 0.00 0.00 0.00 4.92
6146 9080 3.118075 TGAAGATGGGTCGATATTGCCAA 60.118 43.478 0.00 0.00 0.00 4.52
6147 9081 3.131709 AGATGGGTCGATATTGCCAAG 57.868 47.619 0.00 0.00 0.00 3.61
6148 9082 2.154462 GATGGGTCGATATTGCCAAGG 58.846 52.381 0.00 0.00 0.00 3.61
6149 9083 0.465460 TGGGTCGATATTGCCAAGGC 60.465 55.000 3.61 3.61 42.35 4.35
6160 9094 3.502237 GCCAAGGCATTTGACAGTG 57.498 52.632 6.14 0.00 39.21 3.66
6161 9095 0.675633 GCCAAGGCATTTGACAGTGT 59.324 50.000 6.14 0.00 39.21 3.55
6163 9097 2.483538 GCCAAGGCATTTGACAGTGTTT 60.484 45.455 6.14 0.00 39.21 2.83
6164 9098 3.383761 CCAAGGCATTTGACAGTGTTTC 58.616 45.455 0.00 0.00 39.21 2.78
6165 9099 3.383761 CAAGGCATTTGACAGTGTTTCC 58.616 45.455 0.00 0.00 39.21 3.13
6166 9100 2.949447 AGGCATTTGACAGTGTTTCCT 58.051 42.857 0.00 0.00 0.00 3.36
6167 9101 2.624838 AGGCATTTGACAGTGTTTCCTG 59.375 45.455 0.00 0.00 38.45 3.86
6168 9102 2.288395 GGCATTTGACAGTGTTTCCTGG 60.288 50.000 0.00 0.00 36.75 4.45
6172 9106 1.507140 TGACAGTGTTTCCTGGGAGT 58.493 50.000 0.00 0.00 36.75 3.85
6173 9107 1.843851 TGACAGTGTTTCCTGGGAGTT 59.156 47.619 0.00 0.00 36.75 3.01
6175 9109 2.104963 GACAGTGTTTCCTGGGAGTTCT 59.895 50.000 0.00 0.00 36.75 3.01
6177 9111 2.880890 CAGTGTTTCCTGGGAGTTCTTG 59.119 50.000 0.00 0.00 0.00 3.02
6178 9112 1.609072 GTGTTTCCTGGGAGTTCTTGC 59.391 52.381 0.00 0.00 0.00 4.01
6180 9114 2.091885 TGTTTCCTGGGAGTTCTTGCTT 60.092 45.455 0.00 0.00 0.00 3.91
6181 9115 2.276732 TTCCTGGGAGTTCTTGCTTG 57.723 50.000 0.00 0.00 0.00 4.01
6184 9118 2.026822 TCCTGGGAGTTCTTGCTTGATC 60.027 50.000 0.00 0.00 0.00 2.92
6187 9121 2.639347 TGGGAGTTCTTGCTTGATCTGA 59.361 45.455 0.00 0.00 0.00 3.27
6188 9122 3.265221 TGGGAGTTCTTGCTTGATCTGAT 59.735 43.478 0.00 0.00 0.00 2.90
6189 9123 3.626670 GGGAGTTCTTGCTTGATCTGATG 59.373 47.826 0.00 0.00 0.00 3.07
6190 9124 3.065095 GGAGTTCTTGCTTGATCTGATGC 59.935 47.826 0.00 0.00 0.00 3.91
6191 9125 2.676839 AGTTCTTGCTTGATCTGATGCG 59.323 45.455 0.00 0.00 0.00 4.73
6193 9127 0.315951 CTTGCTTGATCTGATGCGCG 60.316 55.000 0.00 0.00 0.00 6.86
6195 9129 2.816360 GCTTGATCTGATGCGCGCA 61.816 57.895 38.27 38.27 0.00 6.09
6198 9132 0.740516 TTGATCTGATGCGCGCAAGA 60.741 50.000 39.68 34.73 43.02 3.02
6200 9134 1.829349 GATCTGATGCGCGCAAGAGG 61.829 60.000 39.68 25.92 43.02 3.69
6201 9135 3.570638 CTGATGCGCGCAAGAGGG 61.571 66.667 39.68 21.33 43.02 4.30
6202 9136 4.393155 TGATGCGCGCAAGAGGGT 62.393 61.111 39.68 21.48 43.02 4.34
6204 9138 2.672996 ATGCGCGCAAGAGGGTTT 60.673 55.556 39.68 16.76 43.02 3.27
6206 9140 4.404654 GCGCGCAAGAGGGTTTGG 62.405 66.667 29.10 0.00 43.02 3.28
6207 9141 2.668212 CGCGCAAGAGGGTTTGGA 60.668 61.111 8.75 0.00 43.02 3.53
6208 9142 2.258013 CGCGCAAGAGGGTTTGGAA 61.258 57.895 8.75 0.00 43.02 3.53
6209 9143 1.586154 CGCGCAAGAGGGTTTGGAAT 61.586 55.000 8.75 0.00 43.02 3.01
6211 9145 0.811281 CGCAAGAGGGTTTGGAATCC 59.189 55.000 0.00 0.00 43.02 3.01
6212 9146 0.811281 GCAAGAGGGTTTGGAATCCG 59.189 55.000 0.00 0.00 0.00 4.18
6213 9147 1.613255 GCAAGAGGGTTTGGAATCCGA 60.613 52.381 0.00 0.00 0.00 4.55
6214 9148 2.945890 GCAAGAGGGTTTGGAATCCGAT 60.946 50.000 0.00 0.00 0.00 4.18
6215 9149 2.684881 CAAGAGGGTTTGGAATCCGATG 59.315 50.000 0.00 0.00 0.00 3.84
6216 9150 1.212935 AGAGGGTTTGGAATCCGATGG 59.787 52.381 0.00 0.00 0.00 3.51
6218 9152 1.852965 AGGGTTTGGAATCCGATGGAT 59.147 47.619 0.00 0.00 45.46 3.41
6220 9154 3.461831 AGGGTTTGGAATCCGATGGATAA 59.538 43.478 0.00 0.00 42.27 1.75
6221 9155 4.079443 AGGGTTTGGAATCCGATGGATAAA 60.079 41.667 0.00 0.00 42.27 1.40
6223 9157 5.304357 GGGTTTGGAATCCGATGGATAAATT 59.696 40.000 0.00 0.00 42.27 1.82
6224 9158 6.215845 GGTTTGGAATCCGATGGATAAATTG 58.784 40.000 0.00 0.00 42.27 2.32
6225 9159 6.215845 GTTTGGAATCCGATGGATAAATTGG 58.784 40.000 0.00 0.00 42.27 3.16
6226 9160 4.406456 TGGAATCCGATGGATAAATTGGG 58.594 43.478 0.00 0.00 42.27 4.12
6227 9161 4.141041 TGGAATCCGATGGATAAATTGGGT 60.141 41.667 0.00 0.00 42.27 4.51
6228 9162 4.459337 GGAATCCGATGGATAAATTGGGTC 59.541 45.833 0.00 0.00 42.27 4.46
6229 9163 3.120321 TCCGATGGATAAATTGGGTCG 57.880 47.619 0.00 0.00 32.54 4.79
6230 9164 1.535462 CCGATGGATAAATTGGGTCGC 59.465 52.381 0.00 0.00 0.00 5.19
6231 9165 1.535462 CGATGGATAAATTGGGTCGCC 59.465 52.381 0.00 0.00 0.00 5.54
6232 9166 1.535462 GATGGATAAATTGGGTCGCCG 59.465 52.381 0.00 0.00 0.00 6.46
6233 9167 0.464735 TGGATAAATTGGGTCGCCGG 60.465 55.000 0.00 0.00 0.00 6.13
6235 9169 0.942252 GATAAATTGGGTCGCCGGTC 59.058 55.000 1.90 0.00 0.00 4.79
6237 9171 0.108041 TAAATTGGGTCGCCGGTCTC 60.108 55.000 1.90 0.00 0.00 3.36
6247 9181 3.322466 CCGGTCTCCTGGCCACTT 61.322 66.667 0.00 0.00 0.00 3.16
6259 10589 0.603065 GGCCACTTGATCCACCAAAC 59.397 55.000 0.00 0.00 0.00 2.93
6260 10590 1.327303 GCCACTTGATCCACCAAACA 58.673 50.000 0.00 0.00 0.00 2.83
6261 10591 1.686052 GCCACTTGATCCACCAAACAA 59.314 47.619 0.00 0.00 0.00 2.83
6262 10592 2.288395 GCCACTTGATCCACCAAACAAG 60.288 50.000 0.00 0.00 43.30 3.16
6263 10593 3.221771 CCACTTGATCCACCAAACAAGA 58.778 45.455 0.00 0.00 41.16 3.02
6267 10597 5.693104 CACTTGATCCACCAAACAAGATTTG 59.307 40.000 0.00 0.00 41.16 2.32
6268 10598 4.255833 TGATCCACCAAACAAGATTTGC 57.744 40.909 0.00 0.00 0.00 3.68
6269 10599 3.640498 TGATCCACCAAACAAGATTTGCA 59.360 39.130 0.00 0.00 0.00 4.08
6272 10602 5.798125 TCCACCAAACAAGATTTGCATTA 57.202 34.783 0.00 0.00 0.00 1.90
6273 10603 5.782047 TCCACCAAACAAGATTTGCATTAG 58.218 37.500 0.00 0.00 0.00 1.73
6274 10604 5.304101 TCCACCAAACAAGATTTGCATTAGT 59.696 36.000 0.00 0.00 0.00 2.24
6275 10605 5.634859 CCACCAAACAAGATTTGCATTAGTC 59.365 40.000 0.00 0.00 0.00 2.59
6276 10606 5.343058 CACCAAACAAGATTTGCATTAGTCG 59.657 40.000 0.00 0.00 0.00 4.18
6277 10607 5.009610 ACCAAACAAGATTTGCATTAGTCGT 59.990 36.000 0.00 0.00 0.00 4.34
6278 10608 5.569059 CCAAACAAGATTTGCATTAGTCGTC 59.431 40.000 0.00 0.00 0.00 4.20
6281 10611 5.689819 ACAAGATTTGCATTAGTCGTCAAC 58.310 37.500 0.00 0.00 0.00 3.18
6283 10613 5.786401 AGATTTGCATTAGTCGTCAACTC 57.214 39.130 0.00 0.00 39.55 3.01
6284 10614 4.327357 AGATTTGCATTAGTCGTCAACTCG 59.673 41.667 0.00 0.00 39.55 4.18
6286 10616 2.592194 TGCATTAGTCGTCAACTCGTC 58.408 47.619 0.00 0.00 39.55 4.20
6288 10618 3.179830 GCATTAGTCGTCAACTCGTCAT 58.820 45.455 0.00 0.00 39.55 3.06
6289 10619 3.240861 GCATTAGTCGTCAACTCGTCATC 59.759 47.826 0.00 0.00 39.55 2.92
6290 10620 2.800694 TAGTCGTCAACTCGTCATCG 57.199 50.000 0.00 0.00 39.55 3.84
6294 10624 0.454452 CGTCAACTCGTCATCGCAGA 60.454 55.000 0.00 0.00 45.75 4.26
6297 10627 0.803768 CAACTCGTCATCGCAGAGGG 60.804 60.000 0.00 0.00 43.63 4.30
6298 10628 2.279120 CTCGTCATCGCAGAGGGC 60.279 66.667 0.00 0.00 43.63 5.19
6299 10629 2.755876 TCGTCATCGCAGAGGGCT 60.756 61.111 0.00 0.00 42.58 5.19
6300 10630 2.185350 CGTCATCGCAGAGGGCTT 59.815 61.111 0.00 0.00 42.58 4.35
6301 10631 1.880340 CGTCATCGCAGAGGGCTTC 60.880 63.158 0.00 0.00 42.58 3.86
6303 10633 2.052104 TCATCGCAGAGGGCTTCGA 61.052 57.895 0.00 0.00 43.49 3.71
6304 10634 1.880340 CATCGCAGAGGGCTTCGAC 60.880 63.158 0.00 0.00 42.24 4.20
6305 10635 2.351244 ATCGCAGAGGGCTTCGACA 61.351 57.895 0.00 0.00 42.24 4.35
6306 10636 2.290122 ATCGCAGAGGGCTTCGACAG 62.290 60.000 0.00 0.00 42.24 3.51
6308 10638 2.581354 CAGAGGGCTTCGACAGGG 59.419 66.667 0.00 0.00 0.00 4.45
6309 10639 3.394836 AGAGGGCTTCGACAGGGC 61.395 66.667 0.00 0.00 0.00 5.19
6310 10640 4.821589 GAGGGCTTCGACAGGGCG 62.822 72.222 0.00 0.00 0.00 6.13
6332 10662 3.320014 GGCCCCTATCGCCCCTAC 61.320 72.222 0.00 0.00 40.78 3.18
6333 10663 2.203803 GCCCCTATCGCCCCTACT 60.204 66.667 0.00 0.00 0.00 2.57
6335 10665 1.465623 CCCCTATCGCCCCTACTCT 59.534 63.158 0.00 0.00 0.00 3.24
6337 10667 1.718280 CCCTATCGCCCCTACTCTTT 58.282 55.000 0.00 0.00 0.00 2.52
6339 10669 2.599677 CCTATCGCCCCTACTCTTTCT 58.400 52.381 0.00 0.00 0.00 2.52
6340 10670 2.966516 CCTATCGCCCCTACTCTTTCTT 59.033 50.000 0.00 0.00 0.00 2.52
6341 10671 2.990066 ATCGCCCCTACTCTTTCTTG 57.010 50.000 0.00 0.00 0.00 3.02
6343 10673 0.613777 CGCCCCTACTCTTTCTTGGT 59.386 55.000 0.00 0.00 0.00 3.67
6344 10674 1.405661 CGCCCCTACTCTTTCTTGGTC 60.406 57.143 0.00 0.00 0.00 4.02
6345 10675 1.065345 GCCCCTACTCTTTCTTGGTCC 60.065 57.143 0.00 0.00 0.00 4.46
6346 10676 2.552367 CCCCTACTCTTTCTTGGTCCT 58.448 52.381 0.00 0.00 0.00 3.85
6347 10677 2.502130 CCCCTACTCTTTCTTGGTCCTC 59.498 54.545 0.00 0.00 0.00 3.71
6348 10678 2.166664 CCCTACTCTTTCTTGGTCCTCG 59.833 54.545 0.00 0.00 0.00 4.63
6349 10679 2.826725 CCTACTCTTTCTTGGTCCTCGT 59.173 50.000 0.00 0.00 0.00 4.18
6352 10682 2.900546 ACTCTTTCTTGGTCCTCGTCAT 59.099 45.455 0.00 0.00 0.00 3.06
6353 10683 3.257393 CTCTTTCTTGGTCCTCGTCATG 58.743 50.000 0.00 0.00 0.00 3.07
6354 10684 2.028112 TCTTTCTTGGTCCTCGTCATGG 60.028 50.000 0.00 0.00 0.00 3.66
6355 10685 1.639722 TTCTTGGTCCTCGTCATGGA 58.360 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.981114 AAAAGCTTAGTGCACAAAATACTTATT 57.019 25.926 21.04 11.81 45.94 1.40
3 4 9.626045 GAAAAGCTTAGTGCACAAAATACTTAT 57.374 29.630 21.04 0.00 45.94 1.73
4 5 8.846211 AGAAAAGCTTAGTGCACAAAATACTTA 58.154 29.630 21.04 0.00 45.94 2.24
5 6 7.716612 AGAAAAGCTTAGTGCACAAAATACTT 58.283 30.769 21.04 14.82 45.94 2.24
6 7 7.277174 AGAAAAGCTTAGTGCACAAAATACT 57.723 32.000 21.04 10.09 45.94 2.12
7 8 8.290325 AGTAGAAAAGCTTAGTGCACAAAATAC 58.710 33.333 21.04 9.81 45.94 1.89
8 9 8.391075 AGTAGAAAAGCTTAGTGCACAAAATA 57.609 30.769 21.04 0.00 45.94 1.40
9 10 7.277174 AGTAGAAAAGCTTAGTGCACAAAAT 57.723 32.000 21.04 0.00 45.94 1.82
10 11 6.693315 AGTAGAAAAGCTTAGTGCACAAAA 57.307 33.333 21.04 11.86 45.94 2.44
11 12 6.317642 TGAAGTAGAAAAGCTTAGTGCACAAA 59.682 34.615 21.04 3.33 45.94 2.83
12 13 5.820423 TGAAGTAGAAAAGCTTAGTGCACAA 59.180 36.000 21.04 10.34 45.94 3.33
13 14 5.236478 GTGAAGTAGAAAAGCTTAGTGCACA 59.764 40.000 21.04 1.84 45.94 4.57
14 15 5.467063 AGTGAAGTAGAAAAGCTTAGTGCAC 59.533 40.000 9.40 9.40 45.94 4.57
15 16 5.611374 AGTGAAGTAGAAAAGCTTAGTGCA 58.389 37.500 0.00 0.00 45.94 4.57
16 17 5.164041 CGAGTGAAGTAGAAAAGCTTAGTGC 60.164 44.000 0.00 0.00 43.29 4.40
17 18 5.921408 ACGAGTGAAGTAGAAAAGCTTAGTG 59.079 40.000 0.00 0.00 0.00 2.74
18 19 5.921408 CACGAGTGAAGTAGAAAAGCTTAGT 59.079 40.000 0.00 0.00 0.00 2.24
19 20 5.921408 ACACGAGTGAAGTAGAAAAGCTTAG 59.079 40.000 10.50 0.00 0.00 2.18
20 21 5.839621 ACACGAGTGAAGTAGAAAAGCTTA 58.160 37.500 10.50 0.00 0.00 3.09
21 22 4.694339 ACACGAGTGAAGTAGAAAAGCTT 58.306 39.130 10.50 0.00 0.00 3.74
22 23 4.323553 ACACGAGTGAAGTAGAAAAGCT 57.676 40.909 10.50 0.00 0.00 3.74
23 24 5.221130 ACTACACGAGTGAAGTAGAAAAGC 58.779 41.667 10.50 0.00 38.79 3.51
36 37 4.514781 TTGCACTATTCACTACACGAGT 57.485 40.909 0.00 0.00 39.82 4.18
37 38 6.311445 AGAATTTGCACTATTCACTACACGAG 59.689 38.462 18.16 0.00 35.04 4.18
38 39 6.163476 AGAATTTGCACTATTCACTACACGA 58.837 36.000 18.16 0.00 35.04 4.35
39 40 6.408858 AGAATTTGCACTATTCACTACACG 57.591 37.500 18.16 0.00 35.04 4.49
40 41 7.201617 GGGTAGAATTTGCACTATTCACTACAC 60.202 40.741 18.16 12.06 35.04 2.90
41 42 6.821665 GGGTAGAATTTGCACTATTCACTACA 59.178 38.462 18.16 1.58 35.04 2.74
42 43 6.821665 TGGGTAGAATTTGCACTATTCACTAC 59.178 38.462 18.16 13.44 35.04 2.73
43 44 6.953101 TGGGTAGAATTTGCACTATTCACTA 58.047 36.000 18.16 7.38 35.04 2.74
44 45 5.815581 TGGGTAGAATTTGCACTATTCACT 58.184 37.500 18.16 5.91 35.04 3.41
45 46 6.318648 TCATGGGTAGAATTTGCACTATTCAC 59.681 38.462 18.16 14.21 35.04 3.18
46 47 6.422333 TCATGGGTAGAATTTGCACTATTCA 58.578 36.000 18.16 6.63 35.04 2.57
47 48 6.942532 TCATGGGTAGAATTTGCACTATTC 57.057 37.500 11.16 11.16 33.23 1.75
50 51 9.890629 GATATATCATGGGTAGAATTTGCACTA 57.109 33.333 7.89 0.00 0.00 2.74
51 52 8.385491 TGATATATCATGGGTAGAATTTGCACT 58.615 33.333 11.49 0.00 0.00 4.40
52 53 8.565896 TGATATATCATGGGTAGAATTTGCAC 57.434 34.615 11.49 0.00 0.00 4.57
53 54 9.234827 CTTGATATATCATGGGTAGAATTTGCA 57.765 33.333 16.06 0.00 36.56 4.08
54 55 9.236006 ACTTGATATATCATGGGTAGAATTTGC 57.764 33.333 24.65 0.00 36.56 3.68
56 57 9.745018 CCACTTGATATATCATGGGTAGAATTT 57.255 33.333 24.65 5.55 34.71 1.82
57 58 8.331740 CCCACTTGATATATCATGGGTAGAATT 58.668 37.037 30.64 10.50 45.64 2.17
58 59 7.865820 CCCACTTGATATATCATGGGTAGAAT 58.134 38.462 30.64 11.04 45.64 2.40
59 60 7.257790 CCCACTTGATATATCATGGGTAGAA 57.742 40.000 30.64 11.14 45.64 2.10
60 61 6.874278 CCCACTTGATATATCATGGGTAGA 57.126 41.667 30.64 11.72 45.64 2.59
65 66 5.879763 TGGTTCCCACTTGATATATCATGG 58.120 41.667 24.65 23.05 36.93 3.66
66 67 7.094075 CCATTGGTTCCCACTTGATATATCATG 60.094 40.741 21.23 21.23 37.79 3.07
67 68 6.950041 CCATTGGTTCCCACTTGATATATCAT 59.050 38.462 16.06 0.00 32.48 2.45
68 69 6.102468 TCCATTGGTTCCCACTTGATATATCA 59.898 38.462 11.49 11.49 30.78 2.15
69 70 6.542821 TCCATTGGTTCCCACTTGATATATC 58.457 40.000 5.73 5.73 30.78 1.63
70 71 6.529084 TCCATTGGTTCCCACTTGATATAT 57.471 37.500 1.86 0.00 30.78 0.86
71 72 5.985175 TCCATTGGTTCCCACTTGATATA 57.015 39.130 1.86 0.00 30.78 0.86
72 73 4.879295 TCCATTGGTTCCCACTTGATAT 57.121 40.909 1.86 0.00 30.78 1.63
73 74 4.666412 TTCCATTGGTTCCCACTTGATA 57.334 40.909 1.86 0.00 30.78 2.15
74 75 3.541242 TTCCATTGGTTCCCACTTGAT 57.459 42.857 1.86 0.00 30.78 2.57
75 76 3.320610 TTTCCATTGGTTCCCACTTGA 57.679 42.857 1.86 0.00 30.78 3.02
76 77 4.317488 CATTTTCCATTGGTTCCCACTTG 58.683 43.478 1.86 0.00 30.78 3.16
77 78 3.327464 CCATTTTCCATTGGTTCCCACTT 59.673 43.478 1.86 0.00 30.78 3.16
78 79 2.905736 CCATTTTCCATTGGTTCCCACT 59.094 45.455 1.86 0.00 30.78 4.00
79 80 2.615240 GCCATTTTCCATTGGTTCCCAC 60.615 50.000 1.86 0.00 35.34 4.61
80 81 1.627834 GCCATTTTCCATTGGTTCCCA 59.372 47.619 1.86 0.00 35.34 4.37
81 82 1.627834 TGCCATTTTCCATTGGTTCCC 59.372 47.619 1.86 0.00 35.34 3.97
82 83 3.415457 TTGCCATTTTCCATTGGTTCC 57.585 42.857 1.86 0.00 35.34 3.62
83 84 3.189080 GCTTTGCCATTTTCCATTGGTTC 59.811 43.478 1.86 0.00 35.34 3.62
84 85 3.148412 GCTTTGCCATTTTCCATTGGTT 58.852 40.909 1.86 0.00 35.34 3.67
85 86 2.781923 GCTTTGCCATTTTCCATTGGT 58.218 42.857 1.86 0.00 35.34 3.67
99 100 0.951558 TTTCTGGACGAAGGCTTTGC 59.048 50.000 14.50 7.30 32.21 3.68
100 101 2.357637 TGTTTTCTGGACGAAGGCTTTG 59.642 45.455 13.03 13.03 32.21 2.77
101 102 2.618709 CTGTTTTCTGGACGAAGGCTTT 59.381 45.455 0.00 0.00 32.21 3.51
102 103 2.222027 CTGTTTTCTGGACGAAGGCTT 58.778 47.619 0.00 0.00 32.21 4.35
103 104 1.543429 CCTGTTTTCTGGACGAAGGCT 60.543 52.381 0.00 0.00 40.71 4.58
104 105 0.875059 CCTGTTTTCTGGACGAAGGC 59.125 55.000 0.00 0.00 40.71 4.35
105 106 1.523758 CCCTGTTTTCTGGACGAAGG 58.476 55.000 0.00 0.00 40.71 3.46
106 107 0.875059 GCCCTGTTTTCTGGACGAAG 59.125 55.000 0.00 0.00 40.71 3.79
107 108 0.181587 TGCCCTGTTTTCTGGACGAA 59.818 50.000 0.00 0.00 40.71 3.85
108 109 0.250295 CTGCCCTGTTTTCTGGACGA 60.250 55.000 0.00 0.00 40.71 4.20
109 110 1.856265 GCTGCCCTGTTTTCTGGACG 61.856 60.000 0.00 0.00 40.71 4.79
110 111 1.527433 GGCTGCCCTGTTTTCTGGAC 61.527 60.000 7.66 0.00 40.71 4.02
111 112 1.228552 GGCTGCCCTGTTTTCTGGA 60.229 57.895 7.66 0.00 40.71 3.86
112 113 0.829182 AAGGCTGCCCTGTTTTCTGG 60.829 55.000 16.57 0.00 41.90 3.86
113 114 0.316204 CAAGGCTGCCCTGTTTTCTG 59.684 55.000 16.57 0.00 41.90 3.02
114 115 0.185901 TCAAGGCTGCCCTGTTTTCT 59.814 50.000 16.57 0.00 41.90 2.52
115 116 1.000171 CTTCAAGGCTGCCCTGTTTTC 60.000 52.381 16.57 0.00 41.90 2.29
116 117 1.043022 CTTCAAGGCTGCCCTGTTTT 58.957 50.000 16.57 0.00 41.90 2.43
117 118 0.106015 ACTTCAAGGCTGCCCTGTTT 60.106 50.000 16.57 0.00 41.90 2.83
118 119 0.106015 AACTTCAAGGCTGCCCTGTT 60.106 50.000 16.57 10.37 41.90 3.16
119 120 0.106015 AAACTTCAAGGCTGCCCTGT 60.106 50.000 16.57 4.47 41.90 4.00
120 121 1.043022 AAAACTTCAAGGCTGCCCTG 58.957 50.000 16.57 13.67 41.90 4.45
121 122 2.108250 TCTAAAACTTCAAGGCTGCCCT 59.892 45.455 16.57 0.00 45.77 5.19
122 123 2.514803 TCTAAAACTTCAAGGCTGCCC 58.485 47.619 16.57 0.00 0.00 5.36
123 124 3.129462 GGATCTAAAACTTCAAGGCTGCC 59.871 47.826 11.65 11.65 0.00 4.85
124 125 3.758554 TGGATCTAAAACTTCAAGGCTGC 59.241 43.478 0.00 0.00 0.00 5.25
125 126 4.156739 GGTGGATCTAAAACTTCAAGGCTG 59.843 45.833 0.00 0.00 0.00 4.85
126 127 4.202567 TGGTGGATCTAAAACTTCAAGGCT 60.203 41.667 0.00 0.00 0.00 4.58
127 128 4.079253 TGGTGGATCTAAAACTTCAAGGC 58.921 43.478 0.00 0.00 0.00 4.35
128 129 6.265422 ACTTTGGTGGATCTAAAACTTCAAGG 59.735 38.462 0.00 0.00 0.00 3.61
129 130 7.277174 ACTTTGGTGGATCTAAAACTTCAAG 57.723 36.000 0.00 0.00 0.00 3.02
130 131 7.559897 AGAACTTTGGTGGATCTAAAACTTCAA 59.440 33.333 0.00 0.00 0.00 2.69
131 132 7.060421 AGAACTTTGGTGGATCTAAAACTTCA 58.940 34.615 0.00 0.00 0.00 3.02
132 133 7.511959 AGAACTTTGGTGGATCTAAAACTTC 57.488 36.000 0.00 0.00 0.00 3.01
133 134 7.898014 AAGAACTTTGGTGGATCTAAAACTT 57.102 32.000 0.00 0.00 0.00 2.66
134 135 7.898014 AAAGAACTTTGGTGGATCTAAAACT 57.102 32.000 0.00 0.00 0.00 2.66
135 136 8.942338 AAAAAGAACTTTGGTGGATCTAAAAC 57.058 30.769 0.45 0.00 32.36 2.43
174 175 2.039746 GGCCCAATTAGCCCAACTTTTT 59.960 45.455 7.33 0.00 45.16 1.94
175 176 1.628340 GGCCCAATTAGCCCAACTTTT 59.372 47.619 7.33 0.00 45.16 2.27
178 179 4.785575 GGCCCAATTAGCCCAACT 57.214 55.556 7.33 0.00 45.16 3.16
223 224 1.446272 GTGGCGGAAGAGGAACGAG 60.446 63.158 0.00 0.00 0.00 4.18
251 254 3.004839 GCCCAAGAGGAACAAGTTCTTTC 59.995 47.826 12.22 10.24 39.45 2.62
253 256 2.587522 GCCCAAGAGGAACAAGTTCTT 58.412 47.619 12.22 5.13 39.45 2.52
289 292 1.219393 GCTCTTCGACCCCTTCTGG 59.781 63.158 0.00 0.00 0.00 3.86
292 295 0.108567 GTCAGCTCTTCGACCCCTTC 60.109 60.000 0.00 0.00 0.00 3.46
385 393 2.026879 GATCAGACGAGCTCCGCC 59.973 66.667 8.47 0.00 43.32 6.13
410 418 1.297967 CATCGAGGACTCACGAGCG 60.298 63.158 0.00 0.00 39.16 5.03
414 422 2.105128 GGGCATCGAGGACTCACG 59.895 66.667 1.57 0.00 0.00 4.35
461 469 1.139058 AGCGCGGACAAGAAGGATATT 59.861 47.619 8.83 0.00 0.00 1.28
464 472 0.741221 GAAGCGCGGACAAGAAGGAT 60.741 55.000 8.83 0.00 0.00 3.24
482 490 1.813859 CCGCCGTTACAGATGGAGA 59.186 57.895 0.00 0.00 36.41 3.71
514 522 1.337823 CCCCTCAACCACGTCAAGTAG 60.338 57.143 0.00 0.00 0.00 2.57
521 529 2.847234 TCAGCCCCTCAACCACGT 60.847 61.111 0.00 0.00 0.00 4.49
533 541 2.939103 CCATTACAGCAAGTAGTCAGCC 59.061 50.000 0.00 0.00 33.43 4.85
581 589 3.685139 TCCCTCAACTTCAGCAAGTAG 57.315 47.619 0.00 0.00 42.45 2.57
591 599 0.678048 GCGCCTCAATCCCTCAACTT 60.678 55.000 0.00 0.00 0.00 2.66
653 661 3.193267 TCTCATGTACCAAAAATGCAGGC 59.807 43.478 0.00 0.00 0.00 4.85
654 662 4.701651 TCTCTCATGTACCAAAAATGCAGG 59.298 41.667 0.00 0.00 0.00 4.85
660 668 9.883142 AAAAACAAATCTCTCATGTACCAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
668 676 5.299279 ACGGTCAAAAACAAATCTCTCATGT 59.701 36.000 0.00 0.00 0.00 3.21
681 689 2.197792 GTGAACCCACGGTCAAAAAC 57.802 50.000 0.00 0.00 33.12 2.43
733 742 5.175859 CGAAATTTTGACTACTCCAGGCTA 58.824 41.667 0.00 0.00 31.12 3.93
743 752 6.817765 ATTTCTGCTCCGAAATTTTGACTA 57.182 33.333 7.02 0.00 39.83 2.59
744 753 5.712152 ATTTCTGCTCCGAAATTTTGACT 57.288 34.783 7.02 0.00 39.83 3.41
782 796 3.956199 CCAACCAATGTGCAGGAAGATAT 59.044 43.478 0.00 0.00 0.00 1.63
857 874 5.813513 ATTTCATGGGCAAAGAAAGAAGT 57.186 34.783 0.00 0.00 35.05 3.01
918 935 2.224426 ACCCTTCTGCGAACACACATTA 60.224 45.455 0.00 0.00 0.00 1.90
976 993 4.338118 TGATTTGGTTTCTTCAGTGACCAC 59.662 41.667 0.26 0.00 41.57 4.16
1018 1035 3.706086 GGGAGGTGGTTTATGATGCATTT 59.294 43.478 0.00 0.00 0.00 2.32
1051 1068 0.317519 CCGAAAAACACCCGCTCAAC 60.318 55.000 0.00 0.00 0.00 3.18
1198 1215 2.031120 CTTGCCTGAAACCAAACCTGA 58.969 47.619 0.00 0.00 0.00 3.86
1302 1325 3.401182 GCCATTGCATGAACCAAAAAGA 58.599 40.909 0.00 0.00 37.47 2.52
1992 2041 0.653636 AACATACGTTATTGCGGCCG 59.346 50.000 24.05 24.05 32.05 6.13
2244 2296 7.676640 TAAGCTCAACTTGGTGAATGACACTG 61.677 42.308 0.00 0.00 42.96 3.66
2378 2430 0.530211 TTTGTTGTGCACATGCCTGC 60.530 50.000 22.39 7.61 41.18 4.85
2417 2469 8.127327 GCATCATCCAATATATGTTGCAGTATC 58.873 37.037 6.68 0.00 44.15 2.24
2584 2638 4.463539 TGCACTCAAACATTCATATGCCTT 59.536 37.500 0.00 0.00 35.03 4.35
2610 2909 5.414454 AGGCATGTGTTACAACAACGATAAT 59.586 36.000 0.00 0.00 41.21 1.28
4390 4690 9.712305 GAGCTATAGCAGAAAGGTAAAATATGA 57.288 33.333 26.07 0.00 45.16 2.15
4394 4694 5.467063 GCGAGCTATAGCAGAAAGGTAAAAT 59.533 40.000 26.07 0.58 45.16 1.82
4488 4792 9.193806 ACATGAGATAATCCAATTACTTTGCTT 57.806 29.630 0.00 0.00 33.73 3.91
4570 4920 9.935682 CTAAAGTACAGGTGTATGCATAAATTG 57.064 33.333 8.28 8.66 32.54 2.32
4837 5893 5.659463 GCAATACCATGCCATTAAAAGACA 58.341 37.500 0.00 0.00 40.49 3.41
5035 6518 5.303971 ACTCTGAATGTTCCTCAAGTCTTG 58.696 41.667 6.21 6.21 0.00 3.02
5109 6597 3.691049 TTGAACTTGAAGCTCAAACGG 57.309 42.857 8.44 0.00 35.73 4.44
5194 6684 7.938140 TTCCCATTACAGGAAAAGATAACAG 57.062 36.000 0.00 0.00 40.46 3.16
5231 6731 4.285775 TGGTACTTTCATCACACATCAGGA 59.714 41.667 0.00 0.00 0.00 3.86
5348 6850 4.461081 AGCTCTCAAGTATCAAGTCTTCGT 59.539 41.667 0.00 0.00 0.00 3.85
5431 6939 3.306088 CGAAAGAGCTAACAAGTCCCTCA 60.306 47.826 0.00 0.00 0.00 3.86
5509 7017 6.418057 TTTTTAATCAGGTCCAAGTGCAAT 57.582 33.333 0.00 0.00 0.00 3.56
5565 7073 7.155328 TCTTCTGATCAAAGGTCTTTCAGTAC 58.845 38.462 13.94 0.00 0.00 2.73
5614 7122 2.843912 ATACAGGGCTGCCAGCAACC 62.844 60.000 22.05 11.52 44.75 3.77
5615 7123 0.967380 AATACAGGGCTGCCAGCAAC 60.967 55.000 22.05 10.79 44.75 4.17
5616 7124 0.680921 GAATACAGGGCTGCCAGCAA 60.681 55.000 22.05 3.09 44.75 3.91
5617 7125 1.077501 GAATACAGGGCTGCCAGCA 60.078 57.895 22.05 3.18 44.75 4.41
5618 7126 1.099879 CAGAATACAGGGCTGCCAGC 61.100 60.000 22.05 8.55 41.46 4.85
5619 7127 0.543277 TCAGAATACAGGGCTGCCAG 59.457 55.000 22.05 14.71 0.00 4.85
5620 7128 0.991146 TTCAGAATACAGGGCTGCCA 59.009 50.000 22.05 0.00 0.00 4.92
5621 7129 2.158696 AGATTCAGAATACAGGGCTGCC 60.159 50.000 11.05 11.05 0.00 4.85
5622 7130 3.137533 GAGATTCAGAATACAGGGCTGC 58.862 50.000 0.00 0.00 0.00 5.25
5623 7131 4.141756 ACAGAGATTCAGAATACAGGGCTG 60.142 45.833 0.00 0.00 0.00 4.85
5624 7132 4.036518 ACAGAGATTCAGAATACAGGGCT 58.963 43.478 0.00 0.00 0.00 5.19
5663 7171 1.229177 GGGCCATGACCCCAAAAGT 60.229 57.895 5.62 0.00 45.00 2.66
5679 7187 7.816031 CGTAATATACCTTGGTACTGTATTGGG 59.184 40.741 1.13 0.00 0.00 4.12
5710 7218 8.978539 GCATGATCATGTTCTAAAGATACGTAA 58.021 33.333 31.09 0.00 40.80 3.18
5711 7219 7.598869 GGCATGATCATGTTCTAAAGATACGTA 59.401 37.037 31.09 0.00 40.80 3.57
5712 7220 6.425114 GGCATGATCATGTTCTAAAGATACGT 59.575 38.462 31.09 0.00 40.80 3.57
5755 7263 5.463724 GCTTAGAACTCTGACCGGAATTATG 59.536 44.000 9.46 0.00 0.00 1.90
5756 7264 5.128827 TGCTTAGAACTCTGACCGGAATTAT 59.871 40.000 9.46 0.00 0.00 1.28
5758 7266 3.260884 TGCTTAGAACTCTGACCGGAATT 59.739 43.478 9.46 0.00 0.00 2.17
5816 7324 4.617808 TTAACAAACAACGCTAACTGCA 57.382 36.364 0.00 0.00 43.06 4.41
5864 7372 3.357079 GCTGTGTTCAGGGCGTGG 61.357 66.667 7.42 0.00 41.57 4.94
5968 7476 2.044650 GCAGCCTCCTTGCCATCA 60.045 61.111 0.00 0.00 35.54 3.07
5969 7477 1.679977 TTGCAGCCTCCTTGCCATC 60.680 57.895 0.00 0.00 40.81 3.51
5970 7478 1.980772 GTTGCAGCCTCCTTGCCAT 60.981 57.895 0.00 0.00 40.81 4.40
5971 7479 2.598394 GTTGCAGCCTCCTTGCCA 60.598 61.111 0.00 0.00 40.81 4.92
5972 7480 0.680921 TATGTTGCAGCCTCCTTGCC 60.681 55.000 0.00 0.00 40.81 4.52
5973 7481 1.336125 GATATGTTGCAGCCTCCTTGC 59.664 52.381 0.00 0.00 41.86 4.01
5974 7482 2.646930 TGATATGTTGCAGCCTCCTTG 58.353 47.619 0.00 0.00 0.00 3.61
5975 7483 3.117776 TCATGATATGTTGCAGCCTCCTT 60.118 43.478 0.00 0.00 0.00 3.36
5976 7484 2.440627 TCATGATATGTTGCAGCCTCCT 59.559 45.455 0.00 0.00 0.00 3.69
5977 7485 2.854963 TCATGATATGTTGCAGCCTCC 58.145 47.619 0.00 0.00 0.00 4.30
5978 7486 4.517832 TCATTCATGATATGTTGCAGCCTC 59.482 41.667 0.00 0.00 0.00 4.70
5979 7487 4.466827 TCATTCATGATATGTTGCAGCCT 58.533 39.130 0.00 0.00 0.00 4.58
5980 7488 4.841443 TCATTCATGATATGTTGCAGCC 57.159 40.909 0.00 0.00 0.00 4.85
5981 7489 6.921307 TCAAATCATTCATGATATGTTGCAGC 59.079 34.615 2.65 0.00 46.22 5.25
5983 7491 8.856103 AGATCAAATCATTCATGATATGTTGCA 58.144 29.630 2.65 0.00 46.22 4.08
5984 7492 9.343103 GAGATCAAATCATTCATGATATGTTGC 57.657 33.333 2.65 0.00 46.22 4.17
5987 7495 7.614583 GGGGAGATCAAATCATTCATGATATGT 59.385 37.037 2.65 0.00 46.22 2.29
5989 7497 7.036059 AGGGGGAGATCAAATCATTCATGATAT 60.036 37.037 2.65 0.00 46.22 1.63
5990 7498 6.276330 AGGGGGAGATCAAATCATTCATGATA 59.724 38.462 2.65 0.00 46.22 2.15
5994 7502 4.737578 CAGGGGGAGATCAAATCATTCAT 58.262 43.478 0.00 0.00 0.00 2.57
5995 7503 3.689280 GCAGGGGGAGATCAAATCATTCA 60.689 47.826 0.00 0.00 0.00 2.57
5997 7505 2.425392 GGCAGGGGGAGATCAAATCATT 60.425 50.000 0.00 0.00 0.00 2.57
5999 7507 0.552848 GGCAGGGGGAGATCAAATCA 59.447 55.000 0.00 0.00 0.00 2.57
6000 7508 0.552848 TGGCAGGGGGAGATCAAATC 59.447 55.000 0.00 0.00 0.00 2.17
6001 7509 1.009997 TTGGCAGGGGGAGATCAAAT 58.990 50.000 0.00 0.00 0.00 2.32
6002 7510 0.783206 TTTGGCAGGGGGAGATCAAA 59.217 50.000 0.00 0.00 0.00 2.69
6003 7511 0.332632 CTTTGGCAGGGGGAGATCAA 59.667 55.000 0.00 0.00 0.00 2.57
6004 7512 2.001803 CTTTGGCAGGGGGAGATCA 58.998 57.895 0.00 0.00 0.00 2.92
6005 7513 1.454663 GCTTTGGCAGGGGGAGATC 60.455 63.158 0.00 0.00 38.54 2.75
6006 7514 2.685999 GCTTTGGCAGGGGGAGAT 59.314 61.111 0.00 0.00 38.54 2.75
6007 7515 4.033776 CGCTTTGGCAGGGGGAGA 62.034 66.667 0.00 0.00 38.60 3.71
6036 7544 6.983906 AAGTTGTTGAGGATGGATCTTTTT 57.016 33.333 0.00 0.00 0.00 1.94
6037 7545 6.983906 AAAGTTGTTGAGGATGGATCTTTT 57.016 33.333 0.00 0.00 0.00 2.27
6038 7546 7.363268 GCATAAAGTTGTTGAGGATGGATCTTT 60.363 37.037 0.00 0.00 0.00 2.52
6039 7547 6.096001 GCATAAAGTTGTTGAGGATGGATCTT 59.904 38.462 0.00 0.00 0.00 2.40
6040 7548 5.591877 GCATAAAGTTGTTGAGGATGGATCT 59.408 40.000 0.00 0.00 0.00 2.75
6041 7549 5.357878 TGCATAAAGTTGTTGAGGATGGATC 59.642 40.000 0.00 0.00 0.00 3.36
6042 7550 5.263599 TGCATAAAGTTGTTGAGGATGGAT 58.736 37.500 0.00 0.00 0.00 3.41
6043 7551 4.661222 TGCATAAAGTTGTTGAGGATGGA 58.339 39.130 0.00 0.00 0.00 3.41
6044 7552 5.105635 ACATGCATAAAGTTGTTGAGGATGG 60.106 40.000 0.00 0.00 0.00 3.51
6046 7554 5.126061 GGACATGCATAAAGTTGTTGAGGAT 59.874 40.000 0.00 0.00 0.00 3.24
6047 7555 4.458989 GGACATGCATAAAGTTGTTGAGGA 59.541 41.667 0.00 0.00 0.00 3.71
6049 7557 5.375417 TGGACATGCATAAAGTTGTTGAG 57.625 39.130 0.00 0.00 0.00 3.02
6052 7560 3.056607 GCCTGGACATGCATAAAGTTGTT 60.057 43.478 0.00 0.00 0.00 2.83
6053 7561 2.493278 GCCTGGACATGCATAAAGTTGT 59.507 45.455 0.00 0.00 0.00 3.32
6054 7562 2.159198 GGCCTGGACATGCATAAAGTTG 60.159 50.000 0.00 0.00 0.00 3.16
6055 7563 2.102578 GGCCTGGACATGCATAAAGTT 58.897 47.619 0.00 0.00 0.00 2.66
6056 7564 1.005805 TGGCCTGGACATGCATAAAGT 59.994 47.619 3.32 0.00 0.00 2.66
6057 7565 1.766494 TGGCCTGGACATGCATAAAG 58.234 50.000 3.32 0.00 0.00 1.85
6058 7566 2.033372 CATGGCCTGGACATGCATAAA 58.967 47.619 28.48 0.00 42.40 1.40
6060 7568 3.425122 CATGGCCTGGACATGCATA 57.575 52.632 28.48 0.00 42.40 3.14
6061 7569 4.270482 CATGGCCTGGACATGCAT 57.730 55.556 28.48 0.00 42.40 3.96
6067 9001 1.478105 GGTTTTGATCATGGCCTGGAC 59.522 52.381 3.32 0.00 0.00 4.02
6071 9005 1.358787 TCAGGGTTTTGATCATGGCCT 59.641 47.619 3.32 0.00 0.00 5.19
6073 9007 3.959535 TTTCAGGGTTTTGATCATGGC 57.040 42.857 0.00 0.00 0.00 4.40
6074 9008 5.664294 TGATTTCAGGGTTTTGATCATGG 57.336 39.130 0.00 0.00 0.00 3.66
6077 9011 5.540911 GCTTTGATTTCAGGGTTTTGATCA 58.459 37.500 0.00 0.00 0.00 2.92
6080 9014 3.634448 TCGCTTTGATTTCAGGGTTTTGA 59.366 39.130 0.00 0.00 0.00 2.69
6083 9017 3.486383 TCTCGCTTTGATTTCAGGGTTT 58.514 40.909 0.00 0.00 0.00 3.27
6089 9023 4.389664 CGTCTTTCTCGCTTTGATTTCA 57.610 40.909 0.00 0.00 0.00 2.69
6101 9035 2.125106 ATGGCCGGCGTCTTTCTC 60.125 61.111 22.54 3.93 0.00 2.87
6102 9036 2.125106 GATGGCCGGCGTCTTTCT 60.125 61.111 22.54 0.00 0.00 2.52
6104 9038 3.682292 GAGGATGGCCGGCGTCTTT 62.682 63.158 22.54 13.10 39.96 2.52
6105 9039 4.162690 GAGGATGGCCGGCGTCTT 62.163 66.667 22.54 17.46 39.96 3.01
6111 9045 1.414061 ATCTTCAGGAGGATGGCCGG 61.414 60.000 0.00 0.00 39.96 6.13
6112 9046 0.250209 CATCTTCAGGAGGATGGCCG 60.250 60.000 12.19 0.00 40.11 6.13
6116 9050 1.069823 CGACCCATCTTCAGGAGGATG 59.930 57.143 12.87 12.87 42.47 3.51
6117 9051 1.062886 TCGACCCATCTTCAGGAGGAT 60.063 52.381 0.00 0.00 0.00 3.24
6119 9053 1.418334 ATCGACCCATCTTCAGGAGG 58.582 55.000 0.00 0.00 0.00 4.30
6120 9054 4.564041 CAATATCGACCCATCTTCAGGAG 58.436 47.826 0.00 0.00 0.00 3.69
6121 9055 3.244215 GCAATATCGACCCATCTTCAGGA 60.244 47.826 0.00 0.00 0.00 3.86
6122 9056 3.070018 GCAATATCGACCCATCTTCAGG 58.930 50.000 0.00 0.00 0.00 3.86
6123 9057 3.070018 GGCAATATCGACCCATCTTCAG 58.930 50.000 0.00 0.00 0.00 3.02
6124 9058 2.437651 TGGCAATATCGACCCATCTTCA 59.562 45.455 0.00 0.00 0.00 3.02
6126 9060 3.480470 CTTGGCAATATCGACCCATCTT 58.520 45.455 0.00 0.00 0.00 2.40
6128 9062 2.154462 CCTTGGCAATATCGACCCATC 58.846 52.381 0.00 0.00 0.00 3.51
6129 9063 1.819305 GCCTTGGCAATATCGACCCAT 60.819 52.381 6.79 0.00 0.00 4.00
6130 9064 0.465460 GCCTTGGCAATATCGACCCA 60.465 55.000 6.79 0.00 0.00 4.51
6132 9066 1.609208 ATGCCTTGGCAATATCGACC 58.391 50.000 18.76 0.00 0.00 4.79
6133 9067 3.066621 TCAAATGCCTTGGCAATATCGAC 59.933 43.478 18.76 0.00 35.56 4.20
6136 9070 4.389890 TGTCAAATGCCTTGGCAATATC 57.610 40.909 18.76 8.85 46.59 1.63
6142 9076 0.675633 ACACTGTCAAATGCCTTGGC 59.324 50.000 4.43 4.43 40.28 4.52
6144 9078 3.068590 AGGAAACACTGTCAAATGCCTTG 59.931 43.478 0.00 0.00 36.25 3.61
6145 9079 3.068590 CAGGAAACACTGTCAAATGCCTT 59.931 43.478 0.00 0.00 33.81 4.35
6146 9080 2.624838 CAGGAAACACTGTCAAATGCCT 59.375 45.455 0.00 0.00 33.81 4.75
6147 9081 2.288395 CCAGGAAACACTGTCAAATGCC 60.288 50.000 0.00 0.00 36.75 4.40
6148 9082 2.288395 CCCAGGAAACACTGTCAAATGC 60.288 50.000 0.00 0.00 36.75 3.56
6149 9083 3.221771 TCCCAGGAAACACTGTCAAATG 58.778 45.455 0.00 0.00 36.75 2.32
6150 9084 3.117512 ACTCCCAGGAAACACTGTCAAAT 60.118 43.478 0.00 0.00 36.75 2.32
6151 9085 2.241176 ACTCCCAGGAAACACTGTCAAA 59.759 45.455 0.00 0.00 36.75 2.69
6152 9086 1.843851 ACTCCCAGGAAACACTGTCAA 59.156 47.619 0.00 0.00 36.75 3.18
6153 9087 1.507140 ACTCCCAGGAAACACTGTCA 58.493 50.000 0.00 0.00 36.75 3.58
6154 9088 2.104963 AGAACTCCCAGGAAACACTGTC 59.895 50.000 0.00 0.00 36.75 3.51
6155 9089 2.127708 AGAACTCCCAGGAAACACTGT 58.872 47.619 0.00 0.00 36.75 3.55
6157 9091 2.749800 GCAAGAACTCCCAGGAAACACT 60.750 50.000 0.00 0.00 0.00 3.55
6159 9093 1.494721 AGCAAGAACTCCCAGGAAACA 59.505 47.619 0.00 0.00 0.00 2.83
6160 9094 2.278332 AGCAAGAACTCCCAGGAAAC 57.722 50.000 0.00 0.00 0.00 2.78
6161 9095 2.174639 TCAAGCAAGAACTCCCAGGAAA 59.825 45.455 0.00 0.00 0.00 3.13
6163 9097 1.434188 TCAAGCAAGAACTCCCAGGA 58.566 50.000 0.00 0.00 0.00 3.86
6164 9098 2.026449 AGATCAAGCAAGAACTCCCAGG 60.026 50.000 0.00 0.00 0.00 4.45
6165 9099 3.008330 CAGATCAAGCAAGAACTCCCAG 58.992 50.000 0.00 0.00 0.00 4.45
6166 9100 2.639347 TCAGATCAAGCAAGAACTCCCA 59.361 45.455 0.00 0.00 0.00 4.37
6167 9101 3.340814 TCAGATCAAGCAAGAACTCCC 57.659 47.619 0.00 0.00 0.00 4.30
6168 9102 3.065095 GCATCAGATCAAGCAAGAACTCC 59.935 47.826 0.00 0.00 0.00 3.85
6172 9106 1.399440 GCGCATCAGATCAAGCAAGAA 59.601 47.619 0.30 0.00 0.00 2.52
6173 9107 1.012086 GCGCATCAGATCAAGCAAGA 58.988 50.000 0.30 0.00 0.00 3.02
6175 9109 1.717348 CGCGCATCAGATCAAGCAA 59.283 52.632 8.75 0.00 0.00 3.91
6177 9111 2.052414 GCGCGCATCAGATCAAGC 60.052 61.111 29.10 0.00 0.00 4.01
6178 9112 0.315951 CTTGCGCGCATCAGATCAAG 60.316 55.000 36.83 22.41 0.00 3.02
6180 9114 1.149964 CTCTTGCGCGCATCAGATCA 61.150 55.000 36.83 17.47 0.00 2.92
6181 9115 1.563655 CTCTTGCGCGCATCAGATC 59.436 57.895 36.83 0.97 0.00 2.75
6184 9118 3.570638 CCCTCTTGCGCGCATCAG 61.571 66.667 36.83 29.39 0.00 2.90
6187 9121 2.672996 AAACCCTCTTGCGCGCAT 60.673 55.556 36.83 16.82 0.00 4.73
6188 9122 3.659092 CAAACCCTCTTGCGCGCA 61.659 61.111 33.09 33.09 0.00 6.09
6189 9123 4.404654 CCAAACCCTCTTGCGCGC 62.405 66.667 27.26 27.26 0.00 6.86
6190 9124 1.586154 ATTCCAAACCCTCTTGCGCG 61.586 55.000 0.00 0.00 0.00 6.86
6191 9125 0.171231 GATTCCAAACCCTCTTGCGC 59.829 55.000 0.00 0.00 0.00 6.09
6193 9127 0.811281 CGGATTCCAAACCCTCTTGC 59.189 55.000 3.09 0.00 0.00 4.01
6195 9129 2.357154 CCATCGGATTCCAAACCCTCTT 60.357 50.000 3.09 0.00 0.00 2.85
6198 9132 1.295020 TCCATCGGATTCCAAACCCT 58.705 50.000 3.09 0.00 0.00 4.34
6200 9134 6.215845 CAATTTATCCATCGGATTCCAAACC 58.784 40.000 3.09 0.00 39.79 3.27
6201 9135 6.215845 CCAATTTATCCATCGGATTCCAAAC 58.784 40.000 3.09 0.00 39.79 2.93
6202 9136 5.304101 CCCAATTTATCCATCGGATTCCAAA 59.696 40.000 3.09 0.00 39.79 3.28
6204 9138 4.141041 ACCCAATTTATCCATCGGATTCCA 60.141 41.667 3.09 0.00 39.79 3.53
6206 9140 4.154195 CGACCCAATTTATCCATCGGATTC 59.846 45.833 0.00 0.00 39.79 2.52
6207 9141 4.072131 CGACCCAATTTATCCATCGGATT 58.928 43.478 0.00 0.00 39.79 3.01
6208 9142 3.674997 CGACCCAATTTATCCATCGGAT 58.325 45.455 0.43 0.43 45.40 4.18
6209 9143 2.808933 GCGACCCAATTTATCCATCGGA 60.809 50.000 0.00 0.00 35.55 4.55
6211 9145 1.535462 GGCGACCCAATTTATCCATCG 59.465 52.381 0.00 0.00 0.00 3.84
6212 9146 1.535462 CGGCGACCCAATTTATCCATC 59.465 52.381 0.00 0.00 0.00 3.51
6213 9147 1.604604 CGGCGACCCAATTTATCCAT 58.395 50.000 0.00 0.00 0.00 3.41
6214 9148 0.464735 CCGGCGACCCAATTTATCCA 60.465 55.000 9.30 0.00 0.00 3.41
6215 9149 0.464916 ACCGGCGACCCAATTTATCC 60.465 55.000 9.30 0.00 0.00 2.59
6216 9150 0.942252 GACCGGCGACCCAATTTATC 59.058 55.000 9.30 0.00 0.00 1.75
6218 9152 0.108041 GAGACCGGCGACCCAATTTA 60.108 55.000 9.30 0.00 0.00 1.40
6220 9154 2.267961 GAGACCGGCGACCCAATT 59.732 61.111 9.30 0.00 0.00 2.32
6221 9155 3.782443 GGAGACCGGCGACCCAAT 61.782 66.667 9.30 0.00 0.00 3.16
6230 9164 3.322466 AAGTGGCCAGGAGACCGG 61.322 66.667 5.11 0.00 0.00 5.28
6231 9165 1.903877 ATCAAGTGGCCAGGAGACCG 61.904 60.000 5.11 0.00 0.00 4.79
6232 9166 0.107459 GATCAAGTGGCCAGGAGACC 60.107 60.000 5.11 0.00 0.00 3.85
6233 9167 0.107459 GGATCAAGTGGCCAGGAGAC 60.107 60.000 5.11 0.00 0.00 3.36
6235 9169 0.393537 GTGGATCAAGTGGCCAGGAG 60.394 60.000 5.11 0.00 31.18 3.69
6237 9171 1.379044 GGTGGATCAAGTGGCCAGG 60.379 63.158 5.11 0.00 31.18 4.45
6239 9173 0.187117 TTTGGTGGATCAAGTGGCCA 59.813 50.000 0.00 0.00 0.00 5.36
6240 9174 0.603065 GTTTGGTGGATCAAGTGGCC 59.397 55.000 0.00 0.00 0.00 5.36
6241 9175 1.327303 TGTTTGGTGGATCAAGTGGC 58.673 50.000 0.00 0.00 0.00 5.01
6242 9176 3.221771 TCTTGTTTGGTGGATCAAGTGG 58.778 45.455 0.00 0.00 38.53 4.00
6244 9178 5.739935 GCAAATCTTGTTTGGTGGATCAAGT 60.740 40.000 0.00 0.00 38.53 3.16
6246 9180 4.100653 TGCAAATCTTGTTTGGTGGATCAA 59.899 37.500 0.00 0.00 0.00 2.57
6247 9181 3.640498 TGCAAATCTTGTTTGGTGGATCA 59.360 39.130 0.00 0.00 0.00 2.92
6259 10589 5.931532 AGTTGACGACTAATGCAAATCTTG 58.068 37.500 0.00 0.00 36.65 3.02
6260 10590 5.163953 CGAGTTGACGACTAATGCAAATCTT 60.164 40.000 0.00 0.00 39.19 2.40
6261 10591 4.327357 CGAGTTGACGACTAATGCAAATCT 59.673 41.667 0.00 0.00 39.19 2.40
6262 10592 4.091509 ACGAGTTGACGACTAATGCAAATC 59.908 41.667 0.00 0.00 39.19 2.17
6263 10593 3.994392 ACGAGTTGACGACTAATGCAAAT 59.006 39.130 0.00 0.00 39.19 2.32
6267 10597 2.592194 TGACGAGTTGACGACTAATGC 58.408 47.619 0.00 0.00 39.19 3.56
6268 10598 3.478874 CGATGACGAGTTGACGACTAATG 59.521 47.826 0.00 0.00 39.19 1.90
6269 10599 3.681855 CGATGACGAGTTGACGACTAAT 58.318 45.455 0.00 0.00 39.19 1.73
6272 10602 0.454620 GCGATGACGAGTTGACGACT 60.455 55.000 0.00 0.00 42.70 4.18
6273 10603 0.728129 TGCGATGACGAGTTGACGAC 60.728 55.000 0.00 0.00 42.66 4.34
6274 10604 0.454452 CTGCGATGACGAGTTGACGA 60.454 55.000 0.00 0.00 42.66 4.20
6275 10605 0.454452 TCTGCGATGACGAGTTGACG 60.454 55.000 0.00 0.00 42.66 4.35
6276 10606 1.263776 CTCTGCGATGACGAGTTGAC 58.736 55.000 0.00 0.00 42.66 3.18
6277 10607 0.171231 CCTCTGCGATGACGAGTTGA 59.829 55.000 0.00 0.00 42.66 3.18
6278 10608 0.803768 CCCTCTGCGATGACGAGTTG 60.804 60.000 0.00 0.00 42.66 3.16
6281 10611 2.279120 GCCCTCTGCGATGACGAG 60.279 66.667 0.00 0.00 42.66 4.18
6284 10614 1.880340 CGAAGCCCTCTGCGATGAC 60.880 63.158 0.00 0.00 44.19 3.06
6286 10616 2.496341 TCGAAGCCCTCTGCGATG 59.504 61.111 0.00 0.00 45.03 3.84
6290 10620 2.125350 CCTGTCGAAGCCCTCTGC 60.125 66.667 0.00 0.00 41.71 4.26
6298 10628 4.796231 CGGGTCGCCCTGTCGAAG 62.796 72.222 12.26 0.00 42.67 3.79
6316 10646 2.203803 AGTAGGGGCGATAGGGGC 60.204 66.667 0.00 0.00 0.00 5.80
6317 10647 0.178929 AAGAGTAGGGGCGATAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
6318 10648 1.619332 GAAAGAGTAGGGGCGATAGGG 59.381 57.143 0.00 0.00 0.00 3.53
6319 10649 2.599677 AGAAAGAGTAGGGGCGATAGG 58.400 52.381 0.00 0.00 0.00 2.57
6320 10650 3.243907 CCAAGAAAGAGTAGGGGCGATAG 60.244 52.174 0.00 0.00 0.00 2.08
6321 10651 2.698797 CCAAGAAAGAGTAGGGGCGATA 59.301 50.000 0.00 0.00 0.00 2.92
6322 10652 1.486726 CCAAGAAAGAGTAGGGGCGAT 59.513 52.381 0.00 0.00 0.00 4.58
6323 10653 0.902531 CCAAGAAAGAGTAGGGGCGA 59.097 55.000 0.00 0.00 0.00 5.54
6325 10655 1.065345 GGACCAAGAAAGAGTAGGGGC 60.065 57.143 0.00 0.00 0.00 5.80
6326 10656 2.502130 GAGGACCAAGAAAGAGTAGGGG 59.498 54.545 0.00 0.00 0.00 4.79
6327 10657 2.166664 CGAGGACCAAGAAAGAGTAGGG 59.833 54.545 0.00 0.00 0.00 3.53
6328 10658 2.826725 ACGAGGACCAAGAAAGAGTAGG 59.173 50.000 0.00 0.00 0.00 3.18
6330 10660 3.493334 TGACGAGGACCAAGAAAGAGTA 58.507 45.455 0.00 0.00 0.00 2.59
6331 10661 2.317040 TGACGAGGACCAAGAAAGAGT 58.683 47.619 0.00 0.00 0.00 3.24
6332 10662 3.257393 CATGACGAGGACCAAGAAAGAG 58.743 50.000 0.00 0.00 0.00 2.85
6333 10663 2.028112 CCATGACGAGGACCAAGAAAGA 60.028 50.000 0.00 0.00 0.00 2.52
6335 10665 1.974957 TCCATGACGAGGACCAAGAAA 59.025 47.619 0.00 0.00 0.00 2.52
6337 10667 3.374318 TCCATGACGAGGACCAAGA 57.626 52.632 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.